RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12362
         (92 letters)



>gnl|CDD|216555 pfam01531, Glyco_transf_11, Glycosyl transferase family 11.  This
           family contains several fucosyl transferase enzymes.
          Length = 298

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 17  PFLHSLYWPSPRAGFTAQG--REAVESFLNHC 46
            F H          FT     RE +++FL   
Sbjct: 123 TFYHHGLRQEILYEFTLHDHLREEIQNFLRGL 154


>gnl|CDD|218480 pfam05176, ATP-synt_10, ATP10 protein.  ATP 10 is essential for the
           assembly of a functional mitochondrial ATPase complex.
          Length = 255

 Score = 26.5 bits (59), Expect = 1.8
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 4   ATGASMVRSFIAPPFLHSLY 23
           A G    RS+   PFL    
Sbjct: 135 AWGEKQARSYFKNPFLKDYL 154


>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function
           unknown].
          Length = 488

 Score = 26.1 bits (58), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 4   ATGASMVRSFIAPPFLHSLYWPSPRA 29
           A   S +R ++A   LH+L  P+ RA
Sbjct: 129 AVLRSSIREYLASEALHALGIPTTRA 154


>gnl|CDD|200583 cd10960, CE4_NodB_like_1, Catalytic NodB homology domain of
           uncharacterized bacterial polysaccharide deacetylases.
           This family includes many uncharacterized bacterial
           polysaccharide deacetylases. Although their biological
           function still remains unknown, members in this family
           show high sequence homology to the catalytic NodB
           homology domain of Streptococcus pneumoniae
           polysaccharide deacetylase PgdA (SpPgdA), which is an
           extracellular metal-dependent polysaccharide deacetylase
           with de-N-acetylase activity toward a hexamer of
           chitooligosaccharide N-acetylglucosamine, but not
           shorter chitooligosaccharides or a synthetic
           peptidoglycan tetrasaccharide. Like SpPgdA, this family
           is a member of the carbohydrate esterase 4 (CE4)
           superfamily.
          Length = 238

 Score = 26.0 bits (58), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 3   IATGASMVRSFIAPPFLHSLYWPSPRAGFTAQGREAVESFL 43
           I  G  +++  +   F     +P    G TA+ R+AV +FL
Sbjct: 91  IEKGEPVLKPLMGKAFWKYFRFPYLAEGDTAEKRDAVRAFL 131


>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal.  This domain is the C-terminal
           region of the CASP family of proteins. It is a Golgi
           membrane protein which is thought to have a role in
           vesicle transport.
          Length = 245

 Score = 25.4 bits (56), Expect = 4.0
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 11/39 (28%)

Query: 64  QRDR-----------LSHLLEEFAALQDEKSKIRAGNSE 91
           QRDR           L    +  ++L+ E   ++A N +
Sbjct: 87  QRDRFRKRNTELEEELRKQNQTISSLRRELESLKADNIK 125


>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
           transporters and related proteins; solute-binding
           domain.  This family represents the solute-binding
           domain of SLC5 proteins (also called the sodium/glucose
           cotransporter family or solute sodium symporter family)
           that co-transport Na+ with sugars, amino acids,
           inorganic ions or vitamins. Family members include: the
           human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
           myo-inositol (SMIT), choline (CHT), iodide (NIS),
           multivitamin (SMVT), and monocarboxylate (SMCT)
           cotransporters, as well as Vibrio parahaemolyticus
           glucose/galactose (vSGLT), and Escherichia coli proline
           (PutP) and pantothenate (PutF) cotransporters. Vibrio
           parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
           has 13 transmembrane helices (TMs): TM-1, an inverted
           topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
           numbered to conform to the solute carrier 6 family
           Aquifex aeolicus LeuT). One member of this family, human
           SGLT3, has been characterized as a glucose sensor and
           not a transporter. Members of this family are important
           in human physiology and disease.
          Length = 455

 Score = 25.2 bits (56), Expect = 5.8
 Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 3   IATGASMVRSFIAPPFLHSLYWP--SPRAGFTA 33
           ++  A ++ + + PP L  L+W   +      +
Sbjct: 383 LSLAAGLLAAALFPPLLLGLFWKRATKAGAIAS 415


>gnl|CDD|235824 PRK06545, PRK06545, prephenate dehydrogenase; Validated.
          Length = 359

 Score = 24.9 bits (55), Expect = 7.0
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 55  QMCGHNRARQRDRLSHLLEEFAA-LQDEKSKIRAGNSE 91
            +   N     + L   L+E+   L   +  + +G++E
Sbjct: 230 DILESNA----EALLDALDEWIEDLDRARDALESGDAE 263


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,730,206
Number of extensions: 384026
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 19
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)