RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12362
         (92 letters)



>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
           structural genomi research consortium, TIM barrel; HET:
           PLP; 1.90A {Agrobacterium tumefaciens}
          Length = 244

 Score = 26.4 bits (59), Expect = 1.3
 Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 11/37 (29%)

Query: 3   IATGASMVR-----------SFIAPPFLHSLYWPSPR 28
           +  GA+ VR           +       H  +W  P+
Sbjct: 205 VEFGATSVRVGSAIFGSRAENLYFQSHHHHHHWSHPQ 241


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.3 bits (57), Expect = 1.5
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 21/52 (40%)

Query: 61  RARQRDRLSHL------------------LEEFAALQDE---KSKIRAGNSE 91
           R  QR RL  L                  LEE+   Q E   K+KI    ++
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 1.7
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 25/91 (27%)

Query: 4   ATGASMVRSFI--APPFLHSLYWPSPRA------GFTA----QGREAV--ESFLNHC-VR 48
            T   +V   I  +   L  L   +  A      G       +       + +L    + 
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237

Query: 49  -PFAGLIQMC---------GHNRARQRDRLS 69
            P  G+IQ+          G      R  L 
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268



 Score = 25.4 bits (55), Expect = 3.1
 Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 15/32 (46%)

Query: 51   AGLIQ----MCGHNRARQRDRLSHLLEEFAAL 78
             GLI       GH         S  L E+AAL
Sbjct: 1750 KGLIPADATFAGH---------S--LGEYAAL 1770


>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
           activating mutation, hypertension, non-steroidal
           antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
           2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
           1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
           3ry9_A*
          Length = 260

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 8/51 (15%), Positives = 20/51 (39%)

Query: 36  REAVESFLNHCVRPFAGLIQMCGHNRARQRDRLSHLLEEFAALQDEKSKIR 86
           + A E    + ++    ++  C +N  +   R   L +   ++ D  S + 
Sbjct: 165 QAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLL 215


>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
           transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
          Length = 323

 Score = 24.0 bits (52), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 47  VRPFAGLIQMCGHNRAR 63
           V+PFA LI     +  R
Sbjct: 233 VQPFASLISKAPLSTPR 249


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,389,799
Number of extensions: 68642
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 11
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)