BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12365
(1324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 46/238 (19%)
Query: 26 GELLATTGRDSSVSIYN-----KHGKLID----KITLPGLCIVMDWDSEGDLLGIISSNS 76
G L A+TG D ++ +YN K G D + G + W +G + S++
Sbjct: 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261
Query: 77 SAVNVWNTYTKK--RTI-VDSGLRDPLTCLVWCKQCSMLQLS----VSIYNKHGKLIDKI 129
+ + +WN T K +TI V + + D ++W KQ ++ +S ++ N ID++
Sbjct: 262 T-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFVNPELGSIDQV 319
Query: 130 TLPGLCIVMDWDSEGDLLGIISSNSSA-VNVWTLLT-----------YTLGERISWSDDG 177
+ S D + S+++ +N W + T T+ I + G
Sbjct: 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379
Query: 178 QL--------LAVTTSGGS-------VKIYLSKLP-KLVVANNGKIAILSSLNQVSVY 219
L L V +GGS V LS P L V+ +G IA+ + +++Y
Sbjct: 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 26 GELLATTGRDSSVSIYNKHGKLIDKIT-----LPGLCIVMD---------------WDSE 65
G+ +A+ D +V ++N++G+L+ +T + G+ D W+
Sbjct: 397 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 66 GDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSI--- 118
G LL ++ +SS+V +TI + D T +W + +LQ S S+
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNRNGQLLQTLTGHSSSVRGV 514
Query: 119 -YNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDG 177
++ G+ I + V W+ G LL ++ +SS+V W +++S DG
Sbjct: 515 AFSPDGQTIASASDD--KTVKLWNRNGQLLQTLTGHSSSV--W---------GVAFSPDG 561
Query: 178 QLLAVTTSGGSVKIY 192
Q +A +S +VK++
Sbjct: 562 QTIASASSDKTVKLW 576
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 26 GELLATTGRDSSVSIYNKHGKLIDKIT-----LPGLCIVMD---------------WDSE 65
G+ +A+ D +V ++N++G+L+ +T + G+ D W+
Sbjct: 192 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Query: 66 GDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSI--- 118
G LL ++ +SS+VN +TI + D T +W + +LQ S S+
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKLWNRNGQLLQTLTGHSSSVWGV 309
Query: 119 -YNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDG 177
++ G+ I + V W+ G L ++ +SS+ VW +++S DG
Sbjct: 310 AFSPDGQTIASASDD--KTVKLWNRNGQHLQTLTGHSSS--VW---------GVAFSPDG 356
Query: 178 QLLAVTTSGGSVKIY 192
Q +A + +VK++
Sbjct: 357 QTIASASDDKTVKLW 371
>pdb|2CYY|A Chain A, Crystal Structure Of Ph1519 From Pyrococcus Horikosii Ot3
Length = 151
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 878 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG 931
+Y++ + Y E V YE DYD VV++ + ++ + +D++ + EG
Sbjct: 79 KYSEVASNLAKYPEIVEVYETTGDYDXVVKIRTKNSEELNNFLDLIGSIPGVEG 132
>pdb|1RI7|A Chain A, Crystal Structure Of A Protein In The LrpASNC FAMILY FROM
THE Hyperthermophilic Archaeon Pyrococcus Sp. Ot3
pdb|2E1C|A Chain A, Structure Of Putative Hth-Type Transcriptional Regulator
Ph1519DNA Complex
pdb|2ZNY|A Chain A, Crystal Structure Of The Ffrp
pdb|2ZNY|B Chain B, Crystal Structure Of The Ffrp
pdb|2ZNY|C Chain C, Crystal Structure Of The Ffrp
pdb|2ZNY|D Chain D, Crystal Structure Of The Ffrp
pdb|2ZNY|E Chain E, Crystal Structure Of The Ffrp
pdb|2ZNY|F Chain F, Crystal Structure Of The Ffrp
pdb|2ZNY|G Chain G, Crystal Structure Of The Ffrp
pdb|2ZNY|H Chain H, Crystal Structure Of The Ffrp
pdb|2ZNZ|A Chain A, Crystal Structure Of Ffrp
pdb|2ZNZ|B Chain B, Crystal Structure Of Ffrp
pdb|2ZNZ|C Chain C, Crystal Structure Of Ffrp
pdb|2ZNZ|D Chain D, Crystal Structure Of Ffrp
pdb|2ZNZ|E Chain E, Crystal Structure Of Ffrp
pdb|2ZNZ|F Chain F, Crystal Structure Of Ffrp
pdb|2ZNZ|G Chain G, Crystal Structure Of Ffrp
pdb|2ZNZ|H Chain H, Crystal Structure Of Ffrp
Length = 171
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 878 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG 931
+Y++ + Y E V YE DYD VV++ + ++ + +D++ + EG
Sbjct: 99 KYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEG 152
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 1189 ESALK----FATLLLRPEYRSNLEDKYRKQIELIVRKAPRKDIASPEEAHVLPCPYCDTM 1244
ES+L+ F +L PE ++N ++++I + +P KD S E+ L + DT
Sbjct: 69 ESSLRAQVPFEQILSLPELKAN---PFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTA 125
Query: 1245 VPDMMLHCASCARIIPFCIASGKHITRNELTKCLEC 1280
PD+ H A RI F + R +L++ + C
Sbjct: 126 TPDIKSHYA--FRIFDF--DDDGTLNREDLSRLVNC 157
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And Kinase-
Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And Kinase-
Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 1189 ESALK----FATLLLRPEYRSNLEDKYRKQIELIVRKAPRKDIASPEEAHVLPCPYCDTM 1244
ES+L+ F +L PE ++N ++++I + +P KD S E+ L + DT
Sbjct: 38 ESSLRAQVPFEQILSLPELKAN---PFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTA 94
Query: 1245 VPDMMLHCASCARIIPFCIASGKHITRNELTKCLEC 1280
PD+ H A RI F + R +L++ + C
Sbjct: 95 TPDIKSHYA--FRIFDF--DDDGTLNREDLSRLVNC 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,420,207
Number of Sequences: 62578
Number of extensions: 1574926
Number of successful extensions: 3385
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3376
Number of HSP's gapped (non-prelim): 15
length of query: 1324
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1214
effective length of database: 8,089,757
effective search space: 9820964998
effective search space used: 9820964998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)