BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12365
(1324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2
Length = 1342
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/942 (38%), Positives = 561/942 (59%), Gaps = 25/942 (2%)
Query: 376 IKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTIPDA 435
+ NR +F + L D EYLGT+ S+ L+++Y++AL ++QLH + + I DA
Sbjct: 404 MNNRAWFYVLGENAVKKLKDMEYLGTVASICLHSDYAAALFEGKVQLHLI---ESEILDA 460
Query: 436 FVDKESKLFPESGEKYTIMTQAMSEEFLFFATSEYELKIFSLSEWKFVSGYKHSDKIKSI 495
++E++LFP +K I+ A++ +FL + T ++ F + +W+FV+ Y+H +K I
Sbjct: 461 QEERETRLFPAVDDKCRILCHALTSDFLIYGTDTGVVQYFYIEDWQFVNDYRHPVSVKKI 520
Query: 496 YPDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEFPPATEEVLWDTVPVDRNVFVCCSKTS 555
+PD G LV I+ + GF+Y D IP+F P + VLW+ P+D+ VF+
Sbjct: 521 FPDPNGTRLVFIDEKSDGFVYCPVNDATYEIPDFSPTIKGVLWENWPMDKGVFIAYDDDK 580
Query: 556 VVTYLFMPNYYEGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLETHKTTMH 615
V TY+F + +G K+ L G+T + P+LL G LT T S K ++ L TH +
Sbjct: 581 VYTYVFHKDTIQGAKVILAGSTKVPFAHKPLLLYNGELTCQTQSGKVNNIYLSTH-GFLS 639
Query: 616 NPKQT----LDISLHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQ 671
N K T L L + L L + +AW +C +LN W A ACL ++E +AIR Y+
Sbjct: 640 NLKDTGPDELRPMLAQNLMLKRFSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYR 699
Query: 672 SLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQ 731
+ G+V LE ++ ED ++L GH+A +++ AQ YL S P AL +RRDL+
Sbjct: 700 RIGNVGIVMSLEQ-IKGIEDYNLLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQH 758
Query: 732 WREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKC 791
W AL LA L +Q P IS +YA QLE G + AL+ Y+K + T D + E C
Sbjct: 759 WDSALQLAKHLAPDQIPFISKEYAIQLEFAGDYVNALAHYEKGI---TGD--NKEHDEAC 813
Query: 792 KEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAA 851
G+A+ SIR+GD R G+ A + S VLK +C IL+ + ++A LYE Y+KAA
Sbjct: 814 LAGVAQMSIRMGDIRRGVNQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGLYYDKAA 873
Query: 852 TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 911
+ YI+ KNW K+G LLPH+ S +QYAKAKEA G Y+E+V AYE A+ + +V+R+ LD
Sbjct: 874 SVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWQSVIRIYLD 933
Query: 912 HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL 971
HLN+ AV+IV+ + +GAK +A + + GD+G+AI FL++SKC +AF L+QQH K+
Sbjct: 934 HLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNNEAFTLAQQHNKM 993
Query: 972 HEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKD 1031
+ + ED N + + +A++FE +K +A +++ +Y RA+K L +
Sbjct: 994 EIYADIIGSEDTTNE-DYQSIALYFEGEKRYLQAGKFFLLCGQYSRALKHFL----KCPS 1048
Query: 1032 SDENLWLGVSI--VSDSHDEKLVETFKTLLEGKLDGVKRNPKFLYRVLMNTGDYVAASSC 1089
S++N+ + ++I V + DE L L G+ DG+ ++ K+L+R+ M Y A+
Sbjct: 1049 SEDNVAIEMAIETVGQAKDELLTNQLIDHLLGENDGMPKDAKYLFRLYMALKQYREAAQT 1108
Query: 1090 ALDVARDEAARGSYRNCHETLYSTIQELKKHKLQVGNDLMAGLMIIHSYLLARYHVRNAN 1149
A+ +AR+E + G+YRN H+ L+S ELK K+++ +++ LMI+HSY+L + HV+N +
Sbjct: 1109 AIIIAREEQSAGNYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVKIHVKNGD 1168
Query: 1150 HSLAAPLLIRVAENISFFPLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNLED 1209
H A +LIRVA NIS FP H ILTSTVIEC +A L+ SA FA +L+RPEYRS ++
Sbjct: 1169 HMKGARMLIRVANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRSKIDA 1228
Query: 1210 KYRKQIELIVRKAPRKDIASPEEAHVLPCPYCDTMVPDMMLHCASCARIIPFCIASGKHI 1269
KY+K+IE +VR R DI+ EEA PCP+C ++P+ L C C IP+CIA+G+H+
Sbjct: 1229 KYKKKIEGMVR---RPDISEIEEA-TTPCPFCKFLLPECELLCPGCKNSIPYCIATGRHM 1284
Query: 1270 TRNELTKCLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRPL 1311
+++ T C C+FPA++ L ++++ E CP+C L L
Sbjct: 1285 LKDDWTVCPHCDFPALYSELKIMLNTESTCPMCSERLNAAQL 1326
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 3 KLIFTLEEPHGPG-DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMD 61
K IF+L E G + WQ+ +G LA TG D V I+++HG+ +I LPG C+ MD
Sbjct: 2 KRIFSLLEKTWLGAPIQFAWQKTSGNYLAVTGADYIVKIFDRHGQKRSEINLPGNCVAMD 61
Query: 62 WDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLS 115
WD +GD+L +I+ SS + +W+ T K + +D+G+RD ++ L+W K S L +
Sbjct: 62 WDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKVGSFLAVG 115
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 116 VSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVW-------TLLTYTLG 168
V I+++HG+ +I LPG C+ MDWD +GD+L +I+ SS + +W + L +
Sbjct: 38 VKIFDRHGQKRSEINLPGNCVAMDWDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMR 97
Query: 169 ERIS---WSDDGQLLAVTTSGGSVKIY 192
+++S WS G LAV T G++ IY
Sbjct: 98 DQMSFLLWSKVGSFLAVGTVKGNLLIY 124
>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1
Length = 1341
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/957 (38%), Positives = 568/957 (59%), Gaps = 29/957 (3%)
Query: 376 IKNRNYF---AHTLVYKPQLLGDKEYLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTI 432
+ NR +F +V K L D EYLGT+ S+ L+++Y++AL +IQLH + + +
Sbjct: 404 MNNRAWFYVLGENVVKK---LKDVEYLGTVASICLHSDYAAALFEGKIQLHLI---ENEM 457
Query: 433 PDAFVDKESKLFPESGEKYTIMTQAMSEEFLFFATSEYELKIFSLSEWKFVSGYKHSDKI 492
DA ++E++LFP +K I+ A++ +FL + T + F + +W+FV+ Y+H +
Sbjct: 458 LDAQEERETRLFPAVDDKCRILCHALTSDFLIYGTDTGIIHYFFIEDWQFVNDYRHPVGV 517
Query: 493 KSIYPDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEFPPATEEVLWDTVPVDRNVFVCCS 552
K ++PD G LV I+ + GF+Y D IP+F P + VLW+ P+D+ VF+
Sbjct: 518 KKLFPDPNGTRLVFIDEKSDGFVYCPVNDATYEIPDFSPTIKGVLWENWPMDKGVFIAYD 577
Query: 553 KTSVVTYLFMPNYYEGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLETHK- 611
V TY F + +G K+ L G+T + P+LL G LT T S K + L TH
Sbjct: 578 DDKVYTYAFHKDTIQGSKVILAGSTKLPFSHKPLLLYNGELTCQTQSGKINSIYLSTHSF 637
Query: 612 -TTMHNPKQT-LDISLHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRA 669
+M + + T L L + L L + +AW+IC +LN +W A+ACL ++E +AIR
Sbjct: 638 LGSMKDTEPTDLRQMLTQTLLLKRFSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRV 697
Query: 670 YQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDL 729
+++ + G V LE ++ ED ++L GH+A + + AQ YL S+ P AL +RRDL
Sbjct: 698 SRTMGDVGTVMSLEQ-IKGIEDYNLLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDL 756
Query: 730 RQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQR 789
+ W AL LA L +Q P IS +YA QLE TG + AL+ Y+K + T D + E
Sbjct: 757 QHWDSALQLAKRLAPDQIPFISKEYAIQLEFTGDYVNALAHYEKGI---TGD--NKEHDE 811
Query: 790 KCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEK 849
C G+A+ SIR+GD R G A + S VLK +C IL+ + ++A LYE Y++
Sbjct: 812 VCLAGVAQMSIRMGDIRRGANQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGQYYDR 871
Query: 850 AATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD 909
AA+ YI+ KNW K+G+LLPH+ S +QYAKAKEA G Y+E+V AYE A+ +++V+R+
Sbjct: 872 AASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWNSVIRIY 931
Query: 910 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 969
LDHLN+ AV IV+ + +GAK +A + + GD+G+AI FL+LSKC +AF L+QQH
Sbjct: 932 LDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNNEAFTLAQQHN 991
Query: 970 KLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQD 1029
K+ + + ED N + + +A++FE +K F+A +++ +Y RA+K L +
Sbjct: 992 KMEIYADIIGAEDTTNE-DYQSIALYFEGEKRHFQAGKFFLLCGQYSRALKHFL----KC 1046
Query: 1030 KDSDENLWLGVSI--VSDSHDEKLVETFKTLLEGKLDGVKRNPKFLYRVLMNTGDYVAAS 1087
S++N+ + ++I V + DE L L G+ DG+ ++ K+L+R+ M Y A+
Sbjct: 1047 PSSEDNVAIEMAIETVGQAKDELLTNQLIDHLMGESDGMPKDAKYLFRLYMALKQYREAA 1106
Query: 1088 SCALDVARDEAARGSYRNCHETLYSTIQELKKHKLQVGNDLMAGLMIIHSYLLARYHVRN 1147
A+ +AR+E + G+YRN H+ L+S ELK K+++ +++ LMI+HSY+L + HV++
Sbjct: 1107 RTAIIIAREEQSAGNYRNAHDVLFSMYAELKAQKIKIPSEMATNLMILHSYILVKIHVKS 1166
Query: 1148 ANHSLAAPLLIRVAENISFFPLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNL 1207
+H A +LIRVA NIS FP H ILTSTVIEC +A L+ SA FA +L+RPEYR+ +
Sbjct: 1167 GDHMKGARMLIRVANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRNKI 1226
Query: 1208 EDKYRKQIELIVRKAPRKDIASPEEAHVLPCPYCDTMVPDMMLHCASCARIIPFCIASGK 1267
+ KY+K+IE +VR R D + EEA PCP+C ++P+ L C C IP+CIA+G+
Sbjct: 1227 DAKYKKKIEAMVR---RPDTSETEEA-TTPCPFCQFLLPECELLCPGCKNNIPYCIATGR 1282
Query: 1268 HITRNELTKCLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRPLPTDIHINEFVFNE 1324
H+ +++ T C C FPA++ ++++ E CP+C L L ++++ E
Sbjct: 1283 HMLKDDWTMCPHCGFPALYSEFKILLNSESTCPMCSERLNSSQLKKITDCSQYLRTE 1339
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 14/142 (9%)
Query: 3 KLIFTLEEPHGPG-DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMD 61
K +F+L E G + WQ+ +G LA TG D V I+++HG+ +I+LPG C+ MD
Sbjct: 2 KRVFSLLEKSWLGAPIQFAWQKSSGNYLAVTGADYIVKIFDRHGQKRSEISLPGNCVTMD 61
Query: 62 WDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SV 116
WD +GD+L +I+ SS + +W+ T K + +D+G+RD ++ L+W K S L + ++
Sbjct: 62 WDKDGDILAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKIGSFLAVGTIKGNL 121
Query: 117 SIYNKH--------GKLIDKIT 130
IYN GK KIT
Sbjct: 122 LIYNHQTSRKIPVLGKHTKKIT 143
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 65/194 (33%)
Query: 171 ISWSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKGTPW 230
+SW+DDGQLLA++T GS+ ++L+KLP IL
Sbjct: 325 LSWTDDGQLLALSTQRGSLHVFLTKLP-----------ILGD------------------ 355
Query: 231 TNFIIETEIEPSWREYHGLVVANNGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIE 290
A + +IA L+SL +V+V IE G P + ++E
Sbjct: 356 ---------------------ACHTRIAYLTSLLEVTV-ANLIE--GEP--PITVSVDVE 389
Query: 291 PSFLNMGPCHVAVGMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANY 350
P+F+ +G H+AVGMNNR W Y L +V K L D E+LGT+ S+ L+++Y
Sbjct: 390 PTFVAVGLYHLAVGMNNRAWFYVLGENVVKK----------LKDVEYLGTVASICLHSDY 439
Query: 351 SSALVNSRIQLHYL 364
++AL +IQLH +
Sbjct: 440 AAALFEGKIQLHLI 453
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 10/87 (11%)
Query: 116 VSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVW-------TLLTYTLG 168
V I+++HG+ +I+LPG C+ MDWD +GD+L +I+ SS + +W + L +
Sbjct: 38 VKIFDRHGQKRSEISLPGNCVTMDWDKDGDILAVIAEKSSCIYLWDANTNKTSQLDNGMR 97
Query: 169 ERIS---WSDDGQLLAVTTSGGSVKIY 192
+++S WS G LAV T G++ IY
Sbjct: 98 DQMSFLLWSKIGSFLAVGTIKGNLLIY 124
>sp|Q9W040|OSM1_DROME Intraflagellar transport protein osm-1 OS=Drosophila melanogaster
GN=osm-1 PE=3 SV=2
Length = 1772
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 111/289 (38%), Gaps = 58/289 (20%)
Query: 650 WRSFAEACLQNLEFSWAIRAYQSLDE-------AGMVWCLESLVEEEEDTSILCGHVAA- 701
W + A L++ A R Y +L AGM+ + E ILC V A
Sbjct: 644 WHNLALIALEDGNLRVAQRCYAALGNVSKAYYLAGMIQQADEFEESSGSPGILCPEVRAK 703
Query: 702 --LLGNH-DTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIIS---CDY- 754
LLG+ TA++ YL AL + + L W EA+ALA G N+ + DY
Sbjct: 704 LALLGSDLRTAERIYLEQGDIESALKMYQQLGMWDEAVALAERRGYNRIAELKQQHMDYL 763
Query: 755 ---------AQQLEMTGQHAQALSFYQKS--------MELATPDI-QDPECQRKCKEGIA 796
Q LE G QA+S Y K+ + L TP I QD + + EG+
Sbjct: 764 LSSEQQEKAGQVLEEQGDLQQAMSLYMKANKPARAARLALKTPHILQDEQVMLQVTEGLV 823
Query: 797 RTSIR--VGD--------------FRLGI---------RLAAESNSSVLKNECADILQQF 831
R+ + GD +R G R+ A + L+ E D L
Sbjct: 824 RSELYELAGDIAHRLSRPEAALALYRKGGAYARALEIGRVVAPQEVTALEEEWGDWLVSR 883
Query: 832 NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYA 880
+L+ ++ Y AG +KA + K W K Q+ + +YA
Sbjct: 884 KQLDASINHYIEAGATQKALEAAVGAKQWRKAVQIAKVLDEPELIQRYA 932
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 826 DILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATT---FIQYAKA 882
D+L + N DA+ L G +E+A Y+ IG+ H+K+ F+Q A
Sbjct: 950 DMLVRANLHKDAIELLNRHGKWERA---YL-------IGE--KHLKAEQVRELFVQLAGT 997
Query: 883 KEAMGSYRES-------------VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC- 928
E G +R++ + Y+R E YD+++R+ + D+ + + A++
Sbjct: 998 LEEQGKFRDAEKVLIAVNEPDLAIAMYKRRELYDSMIRLVERYHKDLLDSTHLHLARQLE 1057
Query: 929 TEGAKRIAD-YCNKHGDFGAAIHFLILSKCYQDAFNLSQ 966
+ G + A+ + GD+ +A+H S ++D + +++
Sbjct: 1058 SRGKLKNAEMHFVASGDWKSAVHMYCSSGRWEDGYRVAK 1096
>sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans
GN=osm-1 PE=2 SV=4
Length = 1737
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 44/346 (12%)
Query: 650 WRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCG-------HVAAL 702
W AE L++ A R Y ++++ V L ++E ++ SI G V A+
Sbjct: 622 WIRVAEMALEHGNLFVAQRCYAAINDVAKVRKLHDILEIADEASISIGGDGTHFYKVRAM 681
Query: 703 LG----NHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQL 758
L A++ +L + A+ + L +W EAL LA L + + Y + L
Sbjct: 682 LAIMGRKFKEAERIFLEQNDTESAIGMYTSLHKWDEALELAKVLNYPEYEQLKTSYLRAL 741
Query: 759 EMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSS 818
TGQ + K+ EL D + ++ + + + L+A +N S
Sbjct: 742 SDTGQDS-------KAAELKVSD----------GDTLSAIQLYIKSNKPLSALSAANNDS 784
Query: 819 VLKN------ECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQL----LP 868
VL + AD L + + A +YE +++KA + + + K QL P
Sbjct: 785 VLSQDENILRQIADSLVKSQLYDKAGDVYEKLKDFDKAVEYFKKGDAYGKAIQLARFAFP 844
Query: 869 HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK---- 924
K T ++ E +G Y +V + A D V + + A+ IV+
Sbjct: 845 E-KVVTLEQEWGLHLEYIGQYDAAVNHFVEANDLKKAVEAAI-RAKEWPKALSIVENIQD 902
Query: 925 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 970
K T IAD+ + GDF A + + + DA + ++ K
Sbjct: 903 QKVRTGYYGEIADHYSNKGDFERAERLFVEAGLFNDAIMMYGKNNK 948
>sp|Q96RY7|IF140_HUMAN Intraflagellar transport protein 140 homolog OS=Homo sapiens
GN=IFT140 PE=1 SV=1
Length = 1462
Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 99/469 (21%), Positives = 174/469 (37%), Gaps = 47/469 (10%)
Query: 618 KQTLDISLHK--VLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDE 675
K T D LH + + + EA+ ++ W + A C++ A ++
Sbjct: 770 KATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGH 829
Query: 676 AGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREA 735
A L E+E + +A LG + A+Q Y + + +W+EA
Sbjct: 830 ARGARALRE-AEQEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEA 888
Query: 736 LALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGI 795
L +A YA LE + ++ALS+Y+KS D E R E +
Sbjct: 889 LQVAEHHDRVHLRSTYHRYAGHLEASADCSRALSYYEKS------DTHRFEVPRMLSEDL 942
Query: 796 ARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYI 855
+ V + L A L+ +++ A+ YE A ++ +
Sbjct: 943 PSLELYVNKMK----------DKTLWRWWAQYLESQGEMDAALHYYELARDHFSLVRIHC 992
Query: 856 QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV------- 908
N K Q+ + A+ E+ ++V Y RA+ + N +R+
Sbjct: 993 FQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENGLD 1052
Query: 909 -DLDHLNDIRHAVDIVKAKKCTE--GAK--RIADYCNKHGDFGAAIHFLILSKCYQDAFN 963
L +L + D+++A + E G + R +K G F A+ AF
Sbjct: 1053 DQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHKAGHFSKALEL---------AFA 1103
Query: 964 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLL 1023
+QQ L + L ++ +P L R + F E RA + A++Y A++L L
Sbjct: 1104 -TQQFVALQLIAEDL--DETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQLCL 1160
Query: 1024 VTARQDKDSDENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRNPKF 1072
Q+ E + +++ DS D E+ + LLE D R +
Sbjct: 1161 ---GQNMSITEEMAEKMTVAKDSSDLP-EESRRELLEQIADCCMRQGSY 1205
>sp|Q6NYH1|IF122_DANRE Intraflagellar transport protein 122 homolog OS=Danio rerio
GN=ift122 PE=2 SV=1
Length = 1187
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 110/291 (37%), Gaps = 21/291 (7%)
Query: 625 LHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLES 684
+++ L+ +++A+NI + WR A L+ L+F A +A+ + + + + S
Sbjct: 568 MYQYLERRMFQQAYNIACLGVTDSDWRDLATEALEGLDFHTAKKAFIRIRDLRYLELISS 627
Query: 685 LVEE----EEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALAT 740
+ E E D + V A G A + Y S AL++ DLR + A
Sbjct: 628 IEERKKRGETDNQLFLADVFAYQGKFHEAAKLYRRSGQDGRALSMYTDLRMFDYAKDFLG 687
Query: 741 SLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSI 800
S T ++ A + + + A Y + E Q + G I
Sbjct: 688 SADPKDTKLLMKKQADWAKNSREPRAAAEMYLSAGEHLKA------IQIIGEHGWVDMLI 741
Query: 801 RVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNW 860
VG RL +++ + CA LQQ + A LY G+ ++ +W
Sbjct: 742 DVGR-----RLDKAERAAL--SRCAVFLQQLQQHGYAAELYSKMGDLRALLQLHVHATHW 794
Query: 861 TKIGQLL---PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 908
+ L+ P + ++ YA+ + E+ A+ +A VRV
Sbjct: 795 DEAFSLVEKHPQFRD-DVYVPYAQWLAEHDRFEEAQRAFHKAGRQAEAVRV 844
>sp|Q8TIU5|SYM_METAC Methionine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=metG PE=3 SV=1
Length = 712
Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 1218 IVRKAPRKDIASPEEAHVLPCPYCDTMVPDMML-----HCASCARIIPFCIASGKHITRN 1272
IV + KD P+ + CP C+ +PD + HC AR GKH+
Sbjct: 115 IVNRLIEKDYVYPKIIEIAYCPACNRFLPDRYVEGACPHCGETARGDECDQGCGKHLEPG 174
Query: 1273 ELTK--CLECNFPAIHRH 1288
EL C C PA +RH
Sbjct: 175 ELQNPVCTICGGPAEYRH 192
>sp|Q6NWV3|IF122_MOUSE Intraflagellar transport protein 122 homolog OS=Mus musculus
GN=Ift122 PE=2 SV=1
Length = 1182
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 105/292 (35%), Gaps = 23/292 (7%)
Query: 625 LHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLES 684
+++ L +KEA+ I + WR A L+ LEF A +A+ + + + + S
Sbjct: 562 MYQYLDRKMFKEAYQIACLGVTDADWRELAMEALEGLEFETARKAFTRVQDLRYLELISS 621
Query: 685 LVEE----EEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALAT 740
+ E E + + V + G A + Y S +AL + DL + A
Sbjct: 622 IEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALDMYTDLCMFEYAKDFLG 681
Query: 741 SLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP-DIQDPECQRKCKEGIARTS 799
S +T ++ A + A+ Y + E A +I IAR
Sbjct: 682 SGDPKETKMLITKQADWARNINEPKAAVEMYISAGEHAKAIEISGSHGWVDMLIDIAR-- 739
Query: 800 IRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKN 859
+L +L CA ++ + A Y G+ + Y+ K
Sbjct: 740 ----------KLDKAEREPLLM--CACYFKKLDSPGYAAETYLKIGDLKSLVQLYVDTKR 787
Query: 860 WTK---IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 908
W + +G+ P K ++ YA+ + E+ A+ +A VRV
Sbjct: 788 WDEAFALGEKHPEFKD-DVYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRV 838
>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport protein 80 homolog OS=Homo sapiens
GN=IFT80 PE=1 SV=3
Length = 777
Score = 38.1 bits (87), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 625 LHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLES 684
LH+ + W++A +C + + W A + N + + A AY ++ E V + S
Sbjct: 592 LHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVANRDMTTAEIAYAAIGEIDKVQYINS 651
Query: 685 LVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGS 744
+ S + H+ GN A+ L + + A+ + +L W AL LA +
Sbjct: 652 IKNLPSKESKM-AHILLFSGNIQEAEIVLLQAGLVYQAIQININLYNWERALELAVKYKT 710
Query: 745 NQTPIISCDYAQQ-LEMTGQH 764
+ +++ Y Q+ LE G+
Sbjct: 711 HVDTVLA--YRQKFLETFGKQ 729
>sp|Q8K057|IFT80_MOUSE Intraflagellar transport protein 80 homolog OS=Mus musculus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 37.7 bits (86), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 625 LHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLES 684
LH+ + W+EA +C + + W A + N + A AY ++ E V + +
Sbjct: 592 LHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVANRDMVTAEIAYAAVGEIDKVRYINA 651
Query: 685 LVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALA 739
+ + S + H+ GN A+ L + + A+ + +L W AL LA
Sbjct: 652 IKDLPSRESKM-AHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWERALELA 705
>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum
GN=snpA PE=1 SV=1
Length = 291
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 842 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED 901
++A +Y KAA + K W + G K+A F++ + +A SY + G Y++
Sbjct: 36 DAASDYTKAANLFKMSKKWDQAGAAFQ--KAAECFLKGSSKHDAASSYVLAAGCYKKGNV 93
Query: 902 YDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDA 961
D + + I + D + + K IA+ GDF AI ++ Y D
Sbjct: 94 IDAITCLKA----AIEYYTDEGRFAISAKHQKEIAELYEAEGDFDQAIASYQIASDYFDG 149
Query: 962 FN 963
N
Sbjct: 150 EN 151
>sp|Q66HB3|IFT80_RAT Intraflagellar transport protein 80 homolog OS=Rattus norvegicus
GN=Ift80 PE=2 SV=1
Length = 777
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 625 LHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLES 684
LH+ + W++A +C + + W A + N + A AY ++ E V + +
Sbjct: 592 LHEYVSSSKWEDAVRLCRFVKEQSLWACLAAMAVANRDMVTAEIAYAAVGEIDKVRYINA 651
Query: 685 LVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGS 744
+ + S + H+ GN A+ L + + A+ + +L W AL LA +
Sbjct: 652 MKDLPSRESKMA-HILMFSGNIQEAETILLQAGLVYQAIQININLYNWERALELAVKYKT 710
Query: 745 NQTPIISCDYAQQ-LEMTGQHAQALSFYQ 772
+ +++ Y Q+ LE G+ + Q
Sbjct: 711 HVDTVLA--YRQKFLETFGKQETNKRYLQ 737
>sp|Q12UQ9|SYM_METBU Methionine--tRNA ligase OS=Methanococcoides burtonii (strain DSM
6242) GN=metG PE=3 SV=1
Length = 684
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 1218 IVRKAPRKDIASPEEAHVLPCPYCDTMVPDMML-----HCASCARIIPFCIASGKHITRN 1272
IV K P+ + CP CD +PD + HC AR GKH+
Sbjct: 112 IVSKLIENGYVYPKTIEIAYCPSCDRSLPDRYVKGTCPHCKKEARGDECDQGCGKHLEPG 171
Query: 1273 ELT--KCLECNFPAIHRH 1288
EL C CN PA ++
Sbjct: 172 ELEHPACTTCNGPAEYKQ 189
>sp|Q7N9N4|LIGB_PHOLL DNA ligase B OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=ligB PE=3 SV=1
Length = 580
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 41/188 (21%)
Query: 310 WVYG-----LNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYL 364
W++G L P ++ + TLVY+ G + SL+ N + VN + Y+
Sbjct: 123 WLHGRLPVWLQPKIDGVAVTLVYQN---------GKLVSLISRGNGAEG-VNWTAKSRYI 172
Query: 365 GD---NQKTIPDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLNANYSSALVNSRIQ 421
D N + P + F H ++ QLLG + L++ ++SS +
Sbjct: 173 PDIPQNIENAPPDLVLQGELFLHKEEHRQQLLGSDGARNRVAGLMMRKDHSS-------E 225
Query: 422 LHYLGDNQKTIPDAFVDKESKL-------FP---------ESGEKYTIMTQAMSEEFLFF 465
L +G + PD + ESKL FP E E+ + E+ + F
Sbjct: 226 LKQIGLFIWSWPDGPAEMESKLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQPMLF 285
Query: 466 ATSEYELK 473
AT LK
Sbjct: 286 ATDGIVLK 293
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 1218 IVRKAPRKDIASPEEAHVLPCPYCDTMVPDMML-----HCASCARIIPFCIASGKHITRN 1272
IV + K P+ + CP C+ +PD + HC AR GKH+
Sbjct: 111 IVNRLIEKGYVYPKTIEIAYCPKCNRFLPDRYVEGSCPHCGEIARGDECDQGCGKHLEPG 170
Query: 1273 ELTK--CLECNFPAIHRH 1288
EL C C PA +R
Sbjct: 171 ELLNPVCTICGGPAEYRQ 188
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
SV=1
Length = 1170
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 650 WRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTA 709
WR AEA LQ L+ A +A+ + + ++ L + + S+ V A G + A
Sbjct: 688 WRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNLQSE-SMKQAEVIAYFGRFEEA 746
Query: 710 QQRYLTSDIPTMALTLRRDLRQWREALAL 738
++ YL D +A+ LR L W L L
Sbjct: 747 ERMYLDMDRRDLAIGLRLKLGDWFRVLQL 775
>sp|Q8PYJ4|SYM_METMA Methionine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=metG
PE=3 SV=2
Length = 715
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 1218 IVRKAPRKDIASPEEAHVLPCPYCDTMVPDMML-----HCASCARIIPFCIASGKHITRN 1272
IV + K P+ + CP C+ +PD + HC AR GKH+
Sbjct: 115 IVSRLIEKGYVYPKIIEIAYCPACNRFLPDRYVEGACPHCGETARGDECDQGCGKHLEPG 174
Query: 1273 ELTK--CLECNFPAIHRH 1288
EL C C PA +R
Sbjct: 175 ELQNPVCTICGGPAEYRQ 192
>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog OS=Rattus norvegicus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 26/198 (13%)
Query: 581 SGQSPVLLTKGLLTLVTSSNKPLDLTLETHKTTMHNPKQTLDISLHKVLKLLNWKEAWNI 640
G++ V++T+G+ T+ + LD L T + + T + + L++ EA
Sbjct: 574 GGKTEVMVTEGVTTVAYT----LDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEA--- 626
Query: 641 CAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVE-----------EE 689
W++ ++ L+ + A R + +L L E E
Sbjct: 627 --------MWKTLSKLALEARQLHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEG 678
Query: 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPI 749
D + +A L N+ A+ +L + A+ + ++L +W E +A+A + G
Sbjct: 679 TDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWDECIAVAEAKGHPALEK 738
Query: 750 ISCDYAQQLEMTGQHAQA 767
+ DY Q+L T Q +A
Sbjct: 739 LRRDYYQRLMDTQQEERA 756
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
Length = 1181
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 650 WRSFAEACLQNLEFSWAIRAY-QSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDT 708
WR AEA LQ L+ A +A+ + D G+ + L+ + S+ V A G +
Sbjct: 699 WRLLAEAALQKLDLYTAQQAFVRCKDYQGIKFV--KLLGNLQSESMKQAEVIAYFGRFED 756
Query: 709 AQQRYLTSDIPTMALTLRRDLRQWREALAL 738
A++ Y D +A+ LR L W L L
Sbjct: 757 AERMYQDMDRRDLAIGLRMKLGDWFRVLQL 786
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
Length = 1181
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 650 WRSFAEACLQNLEFSWAIRAY-QSLDEAGMVWC--LESLVEEEEDTSILCGHVAALLGNH 706
WR AEA LQ L+ A +A+ + D G+ + L L+ E S+ V G
Sbjct: 699 WRLLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKLLSE----SMKQAEVVGYFGRF 754
Query: 707 DTAQQRYLTSDIPTMALTLRRDLRQWREALAL 738
+ A++ YL D +A+ LR L W L L
Sbjct: 755 EEAERTYLEMDRRDLAIGLRLKLGDWFRVLQL 786
>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1672.07 PE=4 SV=1
Length = 902
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 25 TGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83
TG L T D ++ ++ G LID I+ P +C + + GD L + +++W
Sbjct: 583 TGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWT 642
Query: 84 TYTKKRTIVDSGLR 97
+ + + LR
Sbjct: 643 NLSMFKHVSTKALR 656
>sp|Q6CYA2|SYF1_KLULA Pre-mRNA-splicing factor SYF1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SYF1 PE=3 SV=1
Length = 798
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 40/195 (20%)
Query: 673 LDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQW 732
L+ + WC L +D + V + NH+ Q++ + P A R W
Sbjct: 447 LENVWLYWCEYRLKRSIDDAIKVLSVVLEIPDNHELLLQKFEKGESPAQAAIFSSK-RLW 505
Query: 733 REALALATSLGS---------------NQTPIISCDYAQQLEMTGQHAQALSFYQKSMEL 777
L L G+ TP + +YA E +G A+AL+ +++S+E+
Sbjct: 506 AMYLDLLEVKGNYGTAVNAYETAILIKAATPAMFINYALLNESSGHQAEALAVFERSVEI 565
Query: 778 ATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDA 837
P + S + D L + L A+ + K + DI + KL +
Sbjct: 566 FPPSV----------------SKSIWDIYLDVALKAD----ITKEQKRDIFESAIKLAAS 605
Query: 838 ----VTLYESAGNYE 848
V+ +E ++E
Sbjct: 606 GVACVSFFEKYSDFE 620
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGI 71
G+VY C G LA+ G D + ++N +G + TL G + + ++++G +L
Sbjct: 68 GEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML-F 126
Query: 72 ISSNSSAVNVWNTYTKKR 89
+S V VW++ T +R
Sbjct: 127 SASTDKTVAVWDSETGER 144
>sp|Q11176|WDR1_CAEEL Actin-interacting protein 1 OS=Caenorhabditis elegans GN=unc-78
PE=1 SV=1
Length = 611
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 52/241 (21%)
Query: 26 GELLATTGRDSSVSIYN-----KHGKLID----KITLPGLCIVMDWDSEGDLLGIISSNS 76
G L A+TG D ++ +YN K G D + G + W +G + S++
Sbjct: 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261
Query: 77 SAVNVWNTYTKK--RTI-VDSGLRDPLTCLVWCKQCSMLQLS----VSIYNKHGKLIDKI 129
+ + +WN T K +TI V + + D ++W KQ ++ +S ++ N ID++
Sbjct: 262 T-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFVNPELGSIDQV 319
Query: 130 TLPGLCIVMDWDSEGDLLGIISSNSSA-VNVW--------------------TLLTYTLG 168
+ S D + S+++ +N W + T + G
Sbjct: 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379
Query: 169 E--RISWSDDGQLLAVTTSGGS-------VKIYLSKLP-KLVVANNGKIAILSSLNQVSV 218
+ +SW D L V +GGS V LS P L V+ +G IA+ + +++
Sbjct: 380 DLFTVSWDDH---LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436
Query: 219 Y 219
Y
Sbjct: 437 Y 437
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGI 71
G+VY C G LA+ G D + ++N +G + TL G + + ++++G +L
Sbjct: 68 GEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML-F 126
Query: 72 ISSNSSAVNVWNTYTKKR 89
+S V VW++ T +R
Sbjct: 127 SASTDKTVAVWDSETGER 144
>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog OS=Mus musculus
GN=Ift172 PE=1 SV=1
Length = 1749
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 26/198 (13%)
Query: 581 SGQSPVLLTKGLLTLVTSSNKPLDLTLETHKTTMHNPKQTLDISLHKVLKLLNWKEAWNI 640
G++ V++T+G+ T+ + LD L T + + T + + L++ EA
Sbjct: 574 GGKTEVMVTEGVTTVAYT----LDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEA--- 626
Query: 641 CAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVE-----------EE 689
W++ ++ L+ + A R + +L L E E
Sbjct: 627 --------MWKTLSKLALEARQLHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEG 678
Query: 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPI 749
D + +A L N+ A+ +L + A+ + ++L +W E +A+A + G
Sbjct: 679 TDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWEECIAVAEAKGHPALEK 738
Query: 750 ISCDYAQQLEMTGQHAQA 767
+ DY Q L T Q +A
Sbjct: 739 LRRDYYQWLMDTQQEERA 756
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGI 71
G+VY C G LA+ G D + ++N +G + TL G + + ++++G +L
Sbjct: 67 GEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML-F 125
Query: 72 ISSNSSAVNVWNTYTKKR 89
+S V VW++ T +R
Sbjct: 126 SASTDKTVAVWDSETGER 143
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGI 71
G+VY C G LA+ G D + ++N +G + TL G + + ++++G +L
Sbjct: 67 GEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSML-F 125
Query: 72 ISSNSSAVNVWNTYTKKR 89
+S V VW++ T +R
Sbjct: 126 SASTDKTVAVWDSETGER 143
>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2
SV=1
Length = 893
Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
Query: 819 VLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ 878
VLK D QF+K+ DAV + S+G + + WT + + F++
Sbjct: 260 VLKTSLVDFYSQFSKMEDAVRVLNSSGEQD--------VFLWTSV---------VSGFVR 302
Query: 879 YAKAKEAMGSYRE 891
+AKEA+G++ E
Sbjct: 303 NLRAKEAVGTFLE 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,638,497
Number of Sequences: 539616
Number of extensions: 20837553
Number of successful extensions: 49554
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 49401
Number of HSP's gapped (non-prelim): 168
length of query: 1324
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1194
effective length of database: 121,419,379
effective search space: 144974738526
effective search space used: 144974738526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)