Query psy12365
Match_columns 1324
No_of_seqs 779 out of 5993
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 17:13:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 100.0 7.7E-38 2.7E-42 407.0 68.8 673 2-767 2-802 (814)
2 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-30 9.3E-35 335.9 69.1 686 48-892 6-802 (814)
3 2ymu_A WD-40 repeat protein; u 100.0 6.5E-29 2.2E-33 308.9 50.0 491 10-560 13-577 (577)
4 1nr0_A Actin interacting prote 100.0 3.9E-27 1.3E-31 292.8 52.6 422 10-560 56-608 (611)
5 1pgu_A Actin interacting prote 100.0 2.4E-27 8.1E-32 297.6 47.0 490 3-562 8-613 (615)
6 1nr0_A Actin interacting prote 100.0 4E-26 1.4E-30 283.7 49.5 488 4-562 9-566 (611)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-26 9.1E-31 312.6 49.9 494 9-562 611-1206(1249)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-25 3.7E-30 306.6 46.7 454 10-560 654-1246(1249)
9 3ow8_A WD repeat-containing pr 99.9 1.5E-24 5.1E-29 245.3 41.4 187 7-196 26-237 (321)
10 1got_B GT-beta; complex (GTP-b 99.9 1.4E-24 4.8E-29 248.5 41.0 185 9-196 51-257 (340)
11 1vyh_C Platelet-activating fac 99.9 6.4E-25 2.2E-29 258.2 37.2 165 10-177 105-288 (410)
12 2ymu_A WD-40 repeat protein; u 99.9 2.4E-24 8.1E-29 267.7 44.4 374 10-517 177-577 (577)
13 2oaj_A Protein SNI1; WD40 repe 99.9 1.1E-23 3.8E-28 270.9 50.3 183 10-198 14-244 (902)
14 2ynn_A Coatomer subunit beta'; 99.9 4.2E-24 1.4E-28 240.1 37.8 193 1-196 1-217 (304)
15 4ery_A WD repeat-containing pr 99.9 1.8E-23 6.1E-28 236.6 41.2 185 9-196 19-223 (312)
16 3frx_A Guanine nucleotide-bind 99.9 2.5E-23 8.4E-28 235.6 40.1 185 9-196 13-227 (319)
17 2pbi_B Guanine nucleotide-bind 99.9 1.7E-23 5.8E-28 240.5 38.3 184 10-196 61-271 (354)
18 3fm0_A Protein CIAO1; WDR39,SG 99.9 4.3E-23 1.5E-27 236.5 39.3 182 10-194 12-223 (345)
19 1erj_A Transcriptional repress 99.9 4.2E-23 1.4E-27 241.4 37.7 182 11-196 62-287 (393)
20 2xzm_R RACK1; ribosome, transl 99.9 5E-23 1.7E-27 236.0 36.4 184 10-195 18-243 (343)
21 1pgu_A Actin interacting prote 99.9 1.2E-22 4E-27 254.8 42.8 182 10-197 113-329 (615)
22 4g56_B MGC81050 protein; prote 99.9 3E-23 1E-27 238.6 32.6 184 9-196 38-258 (357)
23 1xi4_A Clathrin heavy chain; a 99.9 3.3E-21 1.1E-25 237.3 51.0 408 695-1158 929-1379(1630)
24 3iz6_a 40S ribosomal protein R 99.9 2.8E-23 9.5E-28 241.7 30.7 185 9-196 62-280 (380)
25 4gqb_B Methylosome protein 50; 99.9 7.8E-23 2.7E-27 232.7 33.3 181 10-195 27-245 (344)
26 2hes_X YDR267CP; beta-propelle 99.9 9.6E-22 3.3E-26 223.7 37.8 181 10-195 11-229 (330)
27 4aow_A Guanine nucleotide-bind 99.9 2.3E-21 7.8E-26 222.6 40.0 184 10-196 35-246 (340)
28 1r5m_A SIR4-interacting protei 99.9 8.9E-22 3E-26 234.0 36.3 183 8-195 40-277 (425)
29 3dm0_A Maltose-binding peripla 99.9 1.3E-21 4.4E-26 247.7 39.6 186 10-197 379-593 (694)
30 1xi4_A Clathrin heavy chain; a 99.9 1.6E-19 5.6E-24 222.4 55.4 362 645-1023 983-1453(1630)
31 1gxr_A ESG1, transducin-like e 99.9 3.9E-21 1.3E-25 220.3 39.0 183 10-196 48-255 (337)
32 2ynn_A Coatomer subunit beta'; 99.9 5.6E-21 1.9E-25 214.6 39.4 147 47-195 5-171 (304)
33 1gxr_A ESG1, transducin-like e 99.9 4.8E-22 1.7E-26 227.9 31.1 181 12-196 8-214 (337)
34 2oaj_A Protein SNI1; WD40 repe 99.9 7.6E-21 2.6E-25 244.5 45.3 179 11-194 56-310 (902)
35 1vyh_C Platelet-activating fac 99.9 1.7E-21 5.7E-26 229.0 34.4 143 53-197 107-266 (410)
36 3ei3_B DNA damage-binding prot 99.9 3E-21 1E-25 225.6 36.0 184 10-196 70-282 (383)
37 3zwl_B Eukaryotic translation 99.9 8.1E-21 2.8E-25 220.8 39.2 184 9-196 28-249 (369)
38 4e54_B DNA damage-binding prot 99.9 3.2E-22 1.1E-26 237.6 26.4 185 10-196 116-327 (435)
39 3v7d_B Cell division control p 99.9 2.1E-20 7.3E-25 224.8 42.1 178 10-194 118-339 (464)
40 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.3E-20 1.1E-24 221.5 41.8 176 10-197 115-309 (445)
41 3vl1_A 26S proteasome regulato 99.9 3E-21 1E-25 229.0 32.5 180 15-197 58-279 (420)
42 3ow8_A WD repeat-containing pr 99.9 1.9E-21 6.7E-26 219.7 29.0 182 10-194 119-319 (321)
43 1r5m_A SIR4-interacting protei 99.9 9.8E-21 3.4E-25 225.0 36.5 181 12-196 107-319 (425)
44 2xpi_A Anaphase-promoting comp 99.9 1.3E-20 4.4E-25 235.1 38.1 320 624-1011 90-466 (597)
45 4gqb_B Methylosome protein 50; 99.9 2.5E-21 8.6E-26 220.3 28.1 188 9-199 123-334 (344)
46 3k26_A Polycomb protein EED; W 99.9 2.5E-20 8.5E-25 216.4 36.0 151 10-163 15-191 (366)
47 3odt_A Protein DOA1; ubiquitin 99.9 3.9E-20 1.3E-24 209.4 36.3 180 9-196 14-214 (313)
48 4a11_B DNA excision repair pro 99.9 4.6E-20 1.6E-24 217.9 38.0 184 10-196 40-276 (408)
49 2pm9_A Protein WEB1, protein t 99.9 7.1E-22 2.4E-26 234.1 22.1 181 13-196 12-249 (416)
50 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-20 5.4E-25 219.9 31.7 324 626-1011 7-364 (388)
51 1got_B GT-beta; complex (GTP-b 99.9 6.2E-21 2.1E-25 218.2 27.4 180 10-193 140-340 (340)
52 1sq9_A Antiviral protein SKI8; 99.9 1.9E-20 6.6E-25 220.1 31.8 182 9-196 12-267 (397)
53 1k8k_C P40, ARP2/3 complex 41 99.9 5.4E-20 1.9E-24 214.1 35.1 183 11-196 6-233 (372)
54 3i2n_A WD repeat-containing pr 99.9 3.7E-20 1.3E-24 214.1 32.6 184 9-195 14-242 (357)
55 3dwl_C Actin-related protein 2 99.9 2.1E-21 7.2E-26 226.5 21.7 183 12-197 10-237 (377)
56 2pbi_B Guanine nucleotide-bind 99.9 2.3E-20 7.7E-25 214.4 28.0 180 11-193 152-354 (354)
57 3dw8_B Serine/threonine-protei 99.9 9.5E-20 3.3E-24 218.1 34.3 182 11-196 26-315 (447)
58 4h5i_A Guanine nucleotide-exch 99.9 1.5E-20 5.2E-25 216.6 25.7 182 11-196 131-343 (365)
59 2pm7_B Protein transport prote 99.9 4.3E-20 1.5E-24 206.5 27.6 185 9-196 5-238 (297)
60 3zwl_B Eukaryotic translation 99.9 1.1E-18 3.7E-23 202.8 40.1 142 53-196 31-206 (369)
61 3frx_A Guanine nucleotide-bind 99.9 7.8E-20 2.7E-24 206.7 29.2 183 10-196 104-317 (319)
62 2xpi_A Anaphase-promoting comp 99.9 8.2E-20 2.8E-24 227.8 32.0 334 624-1011 123-500 (597)
63 3gre_A Serine/threonine-protei 99.9 3.8E-20 1.3E-24 220.6 27.5 169 20-198 34-247 (437)
64 1yfq_A Cell cycle arrest prote 99.9 2.5E-19 8.6E-24 205.7 33.2 181 9-196 7-225 (342)
65 4aez_A CDC20, WD repeat-contai 99.9 4.6E-19 1.6E-23 208.1 36.1 179 11-196 89-293 (401)
66 3fm0_A Protein CIAO1; WDR39,SG 99.9 6.2E-20 2.1E-24 210.2 27.9 185 9-196 57-283 (345)
67 1w3b_A UDP-N-acetylglucosamine 99.9 3.1E-19 1.1E-23 208.9 33.3 297 653-1011 5-330 (388)
68 1erj_A Transcriptional repress 99.9 2.2E-19 7.7E-24 209.7 31.8 181 13-197 123-342 (393)
69 4gga_A P55CDC, cell division c 99.8 1.5E-18 5E-23 205.1 38.4 175 15-196 107-310 (420)
70 4g56_B MGC81050 protein; prote 99.8 3.3E-20 1.1E-24 213.2 23.3 185 9-196 135-343 (357)
71 2pm9_A Protein WEB1, protein t 99.8 2.5E-20 8.4E-25 220.8 22.9 183 11-196 65-294 (416)
72 2xzm_R RACK1; ribosome, transl 99.8 2.4E-19 8.1E-24 205.3 30.1 184 9-196 72-285 (343)
73 3bg1_A Protein SEC13 homolog; 99.8 2.2E-20 7.6E-25 210.9 20.6 193 1-196 1-247 (316)
74 2hes_X YDR267CP; beta-propelle 99.8 2.3E-19 7.9E-24 204.0 28.5 182 11-196 56-280 (330)
75 2j04_A TAU60, YPL007P, hypothe 99.8 1.6E-21 5.6E-26 224.6 9.8 170 9-197 11-212 (588)
76 4ggc_A P55CDC, cell division c 99.8 4.4E-18 1.5E-22 192.9 37.2 173 16-195 28-229 (318)
77 3vl1_A 26S proteasome regulato 99.8 3.6E-19 1.2E-23 211.0 29.0 139 57-198 59-214 (420)
78 3f3f_A Nucleoporin SEH1; struc 99.8 3.3E-19 1.1E-23 205.3 27.7 185 10-197 8-338 (351)
79 2pm7_B Protein transport prote 99.8 2.7E-19 9.4E-24 200.0 25.8 186 10-197 50-286 (297)
80 4ery_A WD repeat-containing pr 99.8 9.2E-19 3.2E-23 197.8 30.3 187 10-199 62-271 (312)
81 4h5i_A Guanine nucleotide-exch 99.8 8.4E-19 2.9E-23 201.9 28.4 171 13-187 14-241 (365)
82 3iz6_a 40S ribosomal protein R 99.8 2.5E-19 8.5E-24 208.3 23.9 185 10-196 154-375 (380)
83 3gre_A Serine/threonine-protei 99.8 1E-18 3.4E-23 208.3 29.1 187 10-198 60-294 (437)
84 2j04_B YDR362CP, TAU91; beta p 99.8 6.1E-19 2.1E-23 210.9 26.1 182 12-197 132-387 (524)
85 3dm0_A Maltose-binding peripla 99.8 2.2E-18 7.4E-23 218.1 32.2 186 10-199 427-635 (694)
86 3jrp_A Fusion protein of prote 99.8 1E-18 3.5E-23 203.8 26.9 185 10-197 8-241 (379)
87 3mmy_A MRNA export factor; mRN 99.8 4.4E-18 1.5E-22 197.5 31.0 149 9-163 35-198 (368)
88 1p22_A F-BOX/WD-repeat protein 99.8 5.6E-18 1.9E-22 201.3 32.4 172 10-194 130-323 (435)
89 2aq5_A Coronin-1A; WD40 repeat 99.8 2.3E-18 8E-23 202.3 27.3 186 10-197 78-300 (402)
90 2j04_A TAU60, YPL007P, hypothe 99.8 6E-19 2.1E-23 203.3 21.0 176 11-195 83-296 (588)
91 3ei3_B DNA damage-binding prot 99.8 7.1E-18 2.4E-22 196.9 30.1 184 10-197 115-340 (383)
92 3bg1_A Protein SEC13 homolog; 99.8 4.9E-19 1.7E-23 199.8 19.3 185 10-196 54-293 (316)
93 2aq5_A Coronin-1A; WD40 repeat 99.8 2E-18 7E-23 202.8 23.8 179 15-196 36-254 (402)
94 2gw1_A Mitochondrial precursor 99.8 7.9E-18 2.7E-22 205.6 29.3 332 624-1012 12-475 (514)
95 3dw8_B Serine/threonine-protei 99.8 8E-18 2.7E-22 201.3 28.3 143 51-196 25-258 (447)
96 3k26_A Polycomb protein EED; W 99.8 6.4E-18 2.2E-22 196.0 26.4 182 11-197 67-319 (366)
97 3jrp_A Fusion protein of prote 99.8 6.2E-18 2.1E-22 197.2 26.0 184 10-196 52-287 (379)
98 4aez_A CDC20, WD repeat-contai 99.8 1.5E-17 5E-22 195.2 28.7 184 10-197 173-381 (401)
99 3v7d_B Cell division control p 99.8 1.2E-16 4.1E-21 191.9 37.3 179 10-196 159-381 (464)
100 3dwl_C Actin-related protein 2 99.8 6.8E-19 2.3E-23 205.1 17.0 182 10-195 52-280 (377)
101 1k8k_C P40, ARP2/3 complex 41 99.8 8.2E-18 2.8E-22 195.6 25.7 183 10-196 49-274 (372)
102 4e54_B DNA damage-binding prot 99.8 1.1E-18 3.6E-23 207.3 17.8 187 8-197 159-388 (435)
103 3odt_A Protein DOA1; ubiquitin 99.8 1.8E-16 6.2E-21 179.1 34.4 143 46-193 9-171 (313)
104 3i2n_A WD repeat-containing pr 99.8 1.6E-17 5.5E-22 191.8 26.3 184 11-197 63-292 (357)
105 2j04_B YDR362CP, TAU91; beta p 99.8 3.1E-18 1.1E-22 204.7 20.4 182 11-196 205-428 (524)
106 2ovr_B FBW7, F-BOX/WD repeat p 99.8 1.8E-16 6.1E-21 189.1 35.4 140 48-197 111-269 (445)
107 3jro_A Fusion protein of prote 99.8 7.8E-18 2.7E-22 213.8 24.5 186 9-197 5-239 (753)
108 3fp2_A TPR repeat-containing p 99.8 4.8E-17 1.6E-21 199.8 30.7 332 624-1012 31-488 (537)
109 2w18_A PALB2, fancn, partner a 99.8 2.4E-17 8.3E-22 177.9 23.3 178 12-194 110-355 (356)
110 2xyi_A Probable histone-bindin 99.8 2.7E-17 9.2E-22 194.7 26.1 186 10-198 178-412 (430)
111 3ieg_A DNAJ homolog subfamily 99.8 2.2E-16 7.4E-21 182.4 32.9 285 646-1012 2-332 (359)
112 4gga_A P55CDC, cell division c 99.8 4.8E-17 1.7E-21 192.0 27.8 186 9-196 143-395 (420)
113 3bws_A Protein LP49; two-domai 99.8 1.6E-16 5.3E-21 189.1 31.8 181 13-196 122-334 (433)
114 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.2E-22 184.9 21.6 331 630-1025 15-369 (449)
115 1l0q_A Surface layer protein; 99.8 7.2E-16 2.5E-20 180.5 36.4 169 27-196 3-189 (391)
116 1sq9_A Antiviral protein SKI8; 99.8 4.9E-17 1.7E-21 190.9 25.8 180 13-196 121-395 (397)
117 3bws_A Protein LP49; two-domai 99.8 7.8E-16 2.7E-20 183.0 36.0 183 11-195 58-291 (433)
118 4aow_A Guanine nucleotide-bind 99.8 1.8E-16 6.1E-21 181.6 29.0 183 10-196 125-337 (340)
119 3f3f_A Nucleoporin SEH1; struc 99.8 5.6E-16 1.9E-20 178.1 32.8 140 53-194 10-199 (351)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.8 3.9E-17 1.3E-21 194.9 23.7 180 11-194 100-337 (450)
121 4ggc_A P55CDC, cell division c 99.7 1.8E-16 6.3E-21 179.5 27.7 187 7-195 61-314 (318)
122 2xyi_A Probable histone-bindin 99.7 4.1E-17 1.4E-21 193.1 22.9 185 9-196 124-353 (430)
123 3vu4_A KMHSV2; beta-propeller 99.7 1.4E-16 4.9E-21 182.7 26.4 183 10-197 16-272 (355)
124 4a11_B DNA excision repair pro 99.7 1.5E-16 5.1E-21 187.6 27.1 187 10-198 96-367 (408)
125 2y4t_A DNAJ homolog subfamily 99.7 5.1E-16 1.7E-20 185.8 30.4 287 646-1012 25-355 (450)
126 3jro_A Fusion protein of prote 99.7 4.5E-17 1.5E-21 206.8 21.8 184 10-196 50-285 (753)
127 1yfq_A Cell cycle arrest prote 99.7 7.7E-17 2.6E-21 184.9 21.5 184 10-199 53-285 (342)
128 2vdu_B TRNA (guanine-N(7)-)-me 99.7 9.3E-16 3.2E-20 182.9 31.7 180 14-198 5-273 (450)
129 2y4t_A DNAJ homolog subfamily 99.7 4.5E-16 1.5E-20 186.2 29.0 302 623-999 31-376 (450)
130 3mmy_A MRNA export factor; mRN 99.7 1.3E-15 4.5E-20 176.5 31.6 117 46-164 30-160 (368)
131 3ieg_A DNAJ homolog subfamily 99.7 1.5E-15 5E-20 175.4 31.5 301 623-998 8-352 (359)
132 2xm6_A Protein corresponding t 99.7 3.2E-15 1.1E-19 180.2 35.4 314 631-1013 56-430 (490)
133 2gw1_A Mitochondrial precursor 99.7 5.7E-16 1.9E-20 189.0 28.9 286 647-1012 6-398 (514)
134 3fp2_A TPR repeat-containing p 99.7 6.9E-16 2.4E-20 189.4 29.5 308 647-1012 25-404 (537)
135 3lrv_A PRE-mRNA-splicing facto 99.7 2.6E-16 8.8E-21 180.1 22.0 176 14-196 77-292 (343)
136 4gq1_A NUP37; propeller, trans 99.7 3.2E-16 1.1E-20 182.7 22.7 182 9-193 132-386 (393)
137 4gq1_A NUP37; propeller, trans 99.7 1.2E-15 4.2E-20 177.7 27.6 180 14-196 16-286 (393)
138 1k32_A Tricorn protease; prote 99.7 2.3E-14 7.9E-19 189.6 42.5 175 11-195 12-232 (1045)
139 3lrv_A PRE-mRNA-splicing facto 99.7 2.3E-16 7.7E-21 180.6 20.0 183 10-194 122-331 (343)
140 2xm6_A Protein corresponding t 99.7 8.6E-15 2.9E-19 176.5 34.7 300 644-1012 36-393 (490)
141 3hym_B Cell division cycle pro 99.7 2.3E-15 7.7E-20 171.5 27.1 269 647-1001 22-320 (330)
142 2hqs_A Protein TOLB; TOLB, PAL 99.7 2E-15 6.7E-20 176.9 27.1 184 11-197 176-388 (415)
143 1p22_A F-BOX/WD-repeat protein 99.7 1.1E-14 3.6E-19 172.9 33.4 132 53-194 132-283 (435)
144 3vu4_A KMHSV2; beta-propeller 99.7 1.2E-15 4.1E-20 175.0 24.2 179 15-195 60-335 (355)
145 1l0q_A Surface layer protein; 99.7 6.3E-15 2.2E-19 172.4 30.4 183 13-197 31-234 (391)
146 3hym_B Cell division cycle pro 99.7 1.6E-15 5.6E-20 172.6 23.8 256 689-1012 21-296 (330)
147 1nir_A Nitrite reductase; hemo 99.7 6.9E-14 2.3E-18 168.8 38.4 176 20-198 144-357 (543)
148 1b89_A Protein (clathrin heavy 99.7 1.2E-15 4.2E-20 170.2 20.0 342 659-1090 15-366 (449)
149 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.3E-15 1.8E-19 173.2 23.9 170 26-197 143-345 (415)
150 2ecf_A Dipeptidyl peptidase IV 99.6 4.7E-14 1.6E-18 180.4 30.8 178 13-196 36-321 (741)
151 4g1t_A Interferon-induced prot 99.6 2E-14 7E-19 172.9 23.3 173 647-845 51-240 (472)
152 3sf4_A G-protein-signaling mod 99.6 2E-14 6.9E-19 169.1 22.6 298 647-1002 9-363 (406)
153 1fch_A Peroxisomal targeting s 99.6 6.1E-15 2.1E-19 170.9 17.6 285 656-1011 34-355 (368)
154 1fch_A Peroxisomal targeting s 99.6 2.5E-14 8.4E-19 165.8 22.2 278 628-955 35-356 (368)
155 3sf4_A G-protein-signaling mod 99.6 2.3E-13 7.9E-18 160.0 30.7 227 749-1011 10-292 (406)
156 1k32_A Tricorn protease; prote 99.6 3E-13 1E-17 178.8 34.7 177 11-196 50-274 (1045)
157 2w18_A PALB2, fancn, partner a 99.6 4.1E-14 1.4E-18 152.9 20.6 148 11-162 176-355 (356)
158 4eqf_A PEX5-related protein; a 99.6 1E-14 3.4E-19 168.8 17.2 257 691-1011 66-352 (365)
159 3vgz_A Uncharacterized protein 99.6 1.1E-12 3.8E-17 150.7 34.2 181 12-194 39-260 (353)
160 4eqf_A PEX5-related protein; a 99.6 3.3E-14 1.1E-18 164.4 20.5 265 648-955 66-353 (365)
161 3cv0_A Peroxisome targeting si 99.6 1.7E-14 5.8E-19 163.9 17.1 258 690-1011 21-311 (327)
162 3uq3_A Heat shock protein STI1 99.6 5.4E-14 1.8E-18 153.4 18.8 211 748-1012 5-233 (258)
163 4a1s_A PINS, partner of inscut 99.6 6.8E-14 2.3E-18 164.9 20.8 264 692-1012 50-369 (411)
164 4a1s_A PINS, partner of inscut 99.6 5.9E-13 2E-17 156.8 28.4 227 749-1011 49-328 (411)
165 3ulq_A Response regulator aspa 99.6 4.4E-13 1.5E-17 155.9 26.9 244 694-1012 107-365 (383)
166 4g1t_A Interferon-induced prot 99.6 4.3E-14 1.5E-18 170.1 18.6 324 628-1012 61-456 (472)
167 3cv0_A Peroxisome targeting si 99.6 9.7E-14 3.3E-18 157.6 20.5 258 648-955 22-312 (327)
168 2pl2_A Hypothetical conserved 99.5 1.7E-13 5.8E-18 144.3 19.6 192 747-1013 4-212 (217)
169 2z3z_A Dipeptidyl aminopeptida 99.5 1.7E-12 5.7E-17 164.9 31.7 171 16-196 28-293 (706)
170 3ro2_A PINS homolog, G-protein 99.5 1.3E-12 4.5E-17 148.8 27.3 225 751-1011 8-288 (338)
171 3ro2_A PINS homolog, G-protein 99.5 2.7E-13 9.1E-18 154.6 21.0 264 692-1012 7-329 (338)
172 3mkr_A Coatomer subunit epsilo 99.5 1.4E-12 4.6E-17 144.0 25.0 229 697-955 6-261 (291)
173 2ojh_A Uncharacterized protein 99.5 5.2E-13 1.8E-17 149.0 20.8 182 11-196 39-258 (297)
174 2oit_A Nucleoporin 214KDA; NH2 99.5 1.2E-13 4E-18 162.1 16.0 181 12-196 35-278 (434)
175 1xfd_A DIP, dipeptidyl aminope 99.5 1.6E-12 5.4E-17 165.7 27.3 178 14-197 17-238 (723)
176 3u4t_A TPR repeat-containing p 99.5 5.6E-13 1.9E-17 146.7 19.5 224 690-955 3-247 (272)
177 1ouv_A Conserved hypothetical 99.5 1.5E-12 5.2E-17 143.2 22.5 209 746-1012 4-248 (273)
178 1ri6_A Putative isomerase YBHE 99.5 2.8E-12 9.6E-17 146.7 25.4 183 11-195 35-261 (343)
179 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.7E-17 155.1 22.0 291 651-1012 7-348 (452)
180 3u4y_A Uncharacterized protein 99.5 3.1E-12 1.1E-16 145.4 24.7 182 16-199 85-307 (331)
181 2ecf_A Dipeptidyl peptidase IV 99.5 1.1E-11 3.7E-16 158.4 32.3 132 54-187 36-230 (741)
182 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.2E-17 142.1 22.2 220 749-1012 4-247 (272)
183 2oit_A Nucleoporin 214KDA; NH2 99.5 4.7E-13 1.6E-17 157.0 17.9 151 12-164 91-278 (434)
184 3uq3_A Heat shock protein STI1 99.5 2.7E-12 9.3E-17 139.8 22.9 210 647-900 5-234 (258)
185 3q15_A PSP28, response regulat 99.5 4E-12 1.4E-16 147.3 25.1 244 693-1012 104-362 (378)
186 3u4y_A Uncharacterized protein 99.5 2.3E-11 7.9E-16 138.2 30.9 178 19-198 3-209 (331)
187 2pl2_A Hypothetical conserved 99.5 4.4E-13 1.5E-17 141.1 15.0 180 690-900 5-212 (217)
188 3e4b_A ALGK; tetratricopeptide 99.4 2.3E-12 7.9E-17 152.3 21.9 328 625-1025 10-399 (452)
189 3hfq_A Uncharacterized protein 99.4 1.1E-11 3.8E-16 141.8 26.6 183 11-195 83-316 (347)
190 1ri6_A Putative isomerase YBHE 99.4 6.8E-12 2.3E-16 143.4 24.7 180 15-195 85-307 (343)
191 1pby_B Quinohemoprotein amine 99.4 8.1E-12 2.8E-16 142.4 24.9 178 15-197 35-311 (337)
192 3mkr_A Coatomer subunit epsilo 99.4 1.2E-11 4.3E-16 136.3 24.8 219 756-1004 7-252 (291)
193 1ouv_A Conserved hypothetical 99.4 5.1E-12 1.7E-16 139.0 20.9 207 690-955 6-248 (273)
194 3ulq_A Response regulator aspa 99.4 3.3E-12 1.1E-16 148.5 20.4 228 650-900 106-366 (383)
195 2ojh_A Uncharacterized protein 99.4 4.3E-12 1.5E-16 141.5 20.1 162 32-195 18-203 (297)
196 3vgz_A Uncharacterized protein 99.4 3.7E-11 1.3E-15 137.9 28.3 184 14-198 89-305 (353)
197 4a5s_A Dipeptidyl peptidase 4 99.4 1.4E-10 4.7E-15 147.3 35.4 145 12-161 15-199 (740)
198 1nir_A Nitrite reductase; hemo 99.4 1.9E-11 6.5E-16 147.5 25.7 180 16-196 181-402 (543)
199 2h6f_A Protein farnesyltransfe 99.4 2.7E-12 9.4E-17 146.3 15.8 202 746-1000 95-323 (382)
200 3hfq_A Uncharacterized protein 99.4 2.6E-11 9E-16 138.7 24.1 182 12-195 38-270 (347)
201 3vtx_A MAMA; tetratricopeptide 99.4 4.9E-12 1.7E-16 129.5 15.4 148 747-901 4-169 (184)
202 2h6f_A Protein farnesyltransfe 99.4 2.3E-12 7.9E-17 146.9 13.8 213 647-899 97-344 (382)
203 2z3z_A Dipeptidyl aminopeptida 99.4 7.2E-12 2.5E-16 159.0 19.8 176 14-195 82-341 (706)
204 4abn_A Tetratricopeptide repea 99.3 2.7E-11 9.2E-16 144.1 21.6 210 732-1012 84-318 (474)
205 3q15_A PSP28, response regulat 99.3 1.8E-11 6.1E-16 141.8 19.6 230 649-901 103-364 (378)
206 1jmx_B Amine dehydrogenase; ox 99.3 4.1E-11 1.4E-15 137.2 22.3 179 15-198 44-327 (349)
207 2q7f_A YRRB protein; TPR, prot 99.3 4.9E-12 1.7E-16 136.3 12.9 180 747-955 22-219 (243)
208 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.5E-11 5.1E-16 135.4 16.7 185 746-955 41-241 (275)
209 1pby_B Quinohemoprotein amine 99.3 3.2E-10 1.1E-14 129.0 28.2 127 67-197 2-164 (337)
210 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.9E-11 6.6E-16 134.5 16.9 234 658-952 16-269 (275)
211 3o4h_A Acylamino-acid-releasin 99.3 1.4E-11 4.9E-16 152.0 17.6 177 12-196 20-227 (582)
212 2ho1_A Type 4 fimbrial biogene 99.3 4.9E-11 1.7E-15 129.3 19.5 193 747-1012 36-235 (252)
213 3nf1_A KLC 1, kinesin light ch 99.3 3.2E-11 1.1E-15 135.6 17.8 234 647-900 27-305 (311)
214 1xfd_A DIP, dipeptidyl aminope 99.3 2.3E-11 7.9E-16 154.9 18.7 183 11-196 111-393 (723)
215 3scy_A Hypothetical bacterial 99.3 2.1E-10 7.1E-15 132.0 24.7 181 12-195 48-290 (361)
216 1jof_A Carboxy-CIS,CIS-muconat 99.3 7.4E-11 2.5E-15 135.7 20.9 181 13-195 39-290 (365)
217 3vtx_A MAMA; tetratricopeptide 99.3 4.6E-11 1.6E-15 122.1 16.7 162 645-846 3-169 (184)
218 3o4h_A Acylamino-acid-releasin 99.3 4.1E-11 1.4E-15 147.9 18.6 174 14-194 65-274 (582)
219 2q7f_A YRRB protein; TPR, prot 99.3 1.6E-11 5.3E-16 132.3 12.1 180 690-900 23-220 (243)
220 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.2E-14 126.2 28.9 268 649-955 16-319 (373)
221 2ho1_A Type 4 fimbrial biogene 99.3 7.1E-11 2.4E-15 128.0 17.3 179 690-899 37-235 (252)
222 1z68_A Fibroblast activation p 99.3 1.5E-11 5E-16 156.4 13.5 173 17-193 19-284 (719)
223 3nf1_A KLC 1, kinesin light ch 99.3 6E-11 2.1E-15 133.3 16.9 176 691-900 28-222 (311)
224 3scy_A Hypothetical bacterial 99.2 1.2E-09 4.1E-14 125.6 27.3 181 13-196 99-337 (361)
225 2ooe_A Cleavage stimulation fa 99.2 7E-09 2.4E-13 126.0 35.1 299 628-955 22-451 (530)
226 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.4E-10 8.3E-15 131.4 20.9 180 16-197 85-342 (365)
227 1q7f_A NHL, brain tumor CG1071 99.2 1.6E-09 5.4E-14 119.8 26.5 181 12-196 75-280 (286)
228 2vq2_A PILW, putative fimbrial 99.2 3.9E-10 1.3E-14 119.5 20.8 183 745-955 5-208 (225)
229 4gyw_A UDP-N-acetylglucosamine 99.2 3.1E-11 1.1E-15 148.8 13.6 149 745-900 6-172 (723)
230 2ooe_A Cleavage stimulation fa 99.2 2.5E-09 8.6E-14 130.0 30.5 284 645-1012 11-382 (530)
231 3mkq_B Coatomer subunit alpha; 99.2 3E-10 1E-14 108.7 17.3 124 620-744 7-130 (177)
232 3pe7_A Oligogalacturonate lyas 99.2 2.9E-10 1E-14 132.3 21.1 177 19-197 41-274 (388)
233 4abn_A Tetratricopeptide repea 99.2 6.5E-11 2.2E-15 140.8 15.3 205 634-900 84-319 (474)
234 1jmx_B Amine dehydrogenase; ox 99.2 6.1E-10 2.1E-14 127.4 22.8 141 18-163 4-174 (349)
235 1hz4_A MALT regulatory protein 99.2 1.4E-08 4.7E-13 117.3 34.4 189 750-955 16-241 (373)
236 4gyw_A UDP-N-acetylglucosamine 99.2 6.9E-11 2.4E-15 145.7 14.1 161 646-846 8-173 (723)
237 1q7f_A NHL, brain tumor CG1071 99.2 3.3E-09 1.1E-13 117.3 25.9 184 11-196 27-238 (286)
238 2vq2_A PILW, putative fimbrial 99.2 6.9E-10 2.4E-14 117.6 18.6 179 690-899 8-208 (225)
239 4a5s_A Dipeptidyl peptidase 4 99.2 3.9E-10 1.3E-14 143.1 19.3 176 17-195 65-352 (740)
240 1qqe_A Vesicular transport pro 99.1 3.2E-09 1.1E-13 117.4 23.8 179 763-1013 32-226 (292)
241 3edt_B KLC 2, kinesin light ch 99.1 2.7E-10 9.4E-15 125.7 14.9 224 658-901 12-280 (283)
242 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.8E-14 119.6 20.9 183 633-846 32-227 (292)
243 3e5z_A Putative gluconolactona 99.1 2.2E-08 7.4E-13 111.2 29.7 178 12-195 26-245 (296)
244 1z68_A Fibroblast activation p 99.1 2.9E-10 9.8E-15 144.5 15.1 176 15-194 61-342 (719)
245 3edt_B KLC 2, kinesin light ch 99.1 1.9E-09 6.5E-14 118.8 19.1 209 733-955 25-278 (283)
246 4i17_A Hypothetical protein; T 99.1 2.5E-09 8.7E-14 113.5 19.0 133 748-901 7-145 (228)
247 2ifu_A Gamma-SNAP; membrane fu 99.1 1.1E-09 3.7E-14 122.2 16.2 104 820-955 78-181 (307)
248 3pe7_A Oligogalacturonate lyas 99.1 1.9E-09 6.6E-14 125.4 17.6 185 11-197 78-330 (388)
249 3c5m_A Oligogalacturonate lyas 99.0 5.9E-10 2E-14 130.2 12.8 181 14-196 36-273 (396)
250 1qks_A Cytochrome CD1 nitrite 99.0 9.2E-07 3.1E-11 106.0 40.6 171 25-197 166-374 (567)
251 3fvz_A Peptidyl-glycine alpha- 99.0 1.1E-08 3.6E-13 115.5 22.4 183 11-196 88-322 (329)
252 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-08 7.1E-13 111.8 24.5 225 831-1169 4-229 (307)
253 3azo_A Aminopeptidase; POP fam 99.0 2.4E-09 8.3E-14 134.5 18.8 173 18-195 81-322 (662)
254 3as5_A MAMA; tetratricopeptide 99.0 2E-09 6.8E-14 109.8 14.7 144 750-900 10-171 (186)
255 4i17_A Hypothetical protein; T 99.0 4E-09 1.4E-13 112.0 17.4 158 645-834 5-169 (228)
256 3qky_A Outer membrane assembly 99.0 2.5E-09 8.4E-14 116.4 15.9 152 744-899 11-221 (261)
257 2gop_A Trilobed protease; beta 99.0 1E-08 3.5E-13 117.0 21.5 168 15-195 60-290 (347)
258 2dg1_A DRP35, lactonase; beta 99.0 6.1E-08 2.1E-12 109.7 27.0 183 11-195 42-262 (333)
259 3fvz_A Peptidyl-glycine alpha- 99.0 2.4E-08 8.2E-13 112.6 23.2 183 13-199 23-280 (329)
260 2ond_A Cleavage stimulation fa 99.0 1.7E-08 5.9E-13 112.6 21.6 198 664-899 33-267 (308)
261 2xdw_A Prolyl endopeptidase; a 99.0 7.4E-09 2.5E-13 130.7 20.7 180 12-194 123-364 (710)
262 2ond_A Cleavage stimulation fa 99.0 1.4E-08 4.8E-13 113.3 20.2 186 745-955 47-267 (308)
263 3urz_A Uncharacterized protein 99.0 4.8E-09 1.7E-13 109.2 15.3 170 646-846 3-185 (208)
264 3qky_A Outer membrane assembly 99.0 3.8E-09 1.3E-13 114.8 14.9 170 645-845 13-222 (261)
265 3azo_A Aminopeptidase; POP fam 99.0 7.2E-09 2.5E-13 130.2 18.4 149 12-163 128-322 (662)
266 3as5_A MAMA; tetratricopeptide 98.9 9.1E-09 3.1E-13 104.8 15.4 147 691-868 9-168 (186)
267 2oiz_A Aromatic amine dehydrog 98.9 6.1E-07 2.1E-11 102.2 32.1 134 25-161 14-179 (361)
268 3c5m_A Oligogalacturonate lyas 98.9 3.4E-09 1.1E-13 123.7 12.2 176 18-196 85-329 (396)
269 1rwi_B Serine/threonine-protei 98.9 6.7E-08 2.3E-12 105.6 21.7 182 12-197 65-265 (270)
270 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.6E-08 2.3E-12 102.0 19.4 177 748-955 4-210 (225)
271 2pzi_A Probable serine/threoni 98.9 8.5E-09 2.9E-13 128.4 14.3 187 759-1025 402-602 (681)
272 2pzi_A Probable serine/threoni 98.9 5.1E-09 1.7E-13 130.4 12.1 156 658-846 402-562 (681)
273 2bkl_A Prolyl endopeptidase; m 98.8 2.8E-08 9.4E-13 125.0 18.0 180 11-195 118-348 (695)
274 4ga2_A E3 SUMO-protein ligase 98.8 2.6E-09 8.9E-14 104.2 6.7 85 754-845 3-92 (150)
275 3no2_A Uncharacterized protein 98.8 1.3E-07 4.6E-12 102.6 20.8 167 25-196 4-195 (276)
276 3urz_A Uncharacterized protein 98.8 2.1E-08 7.1E-13 104.3 13.4 146 749-901 5-185 (208)
277 2oiz_A Aromatic amine dehydrog 98.8 1.4E-07 4.8E-12 107.5 21.3 177 18-197 54-335 (361)
278 4ga2_A E3 SUMO-protein ligase 98.8 7.4E-09 2.5E-13 101.0 9.1 141 653-833 3-149 (150)
279 3u3w_A Transcriptional activat 98.8 1.7E-07 5.9E-12 103.5 19.9 180 752-970 79-272 (293)
280 2dg1_A DRP35, lactonase; beta 98.8 5.7E-08 1.9E-12 110.0 15.9 177 14-195 6-212 (333)
281 3qou_A Protein YBBN; thioredox 98.8 4.1E-08 1.4E-12 107.9 14.1 148 745-899 114-281 (287)
282 2qfc_A PLCR protein; TPR, HTH, 98.8 6.1E-07 2.1E-11 99.1 23.4 179 752-1011 79-262 (293)
283 4b4t_Q 26S proteasome regulato 98.8 5.6E-08 1.9E-12 114.9 15.7 214 750-1012 6-242 (434)
284 1qks_A Cytochrome CD1 nitrite 98.8 1.4E-06 4.7E-11 104.4 27.7 182 14-196 197-421 (567)
285 3rjv_A Putative SEL1 repeat pr 98.8 6.3E-08 2.2E-12 100.9 14.1 146 745-900 15-195 (212)
286 3qou_A Protein YBBN; thioredox 98.8 6.4E-08 2.2E-12 106.4 14.8 160 646-845 116-282 (287)
287 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.1E-07 1.1E-11 96.8 19.0 168 646-844 3-210 (225)
288 2mad_H Methylamine dehydrogena 98.7 2.8E-05 9.7E-10 88.3 36.1 110 20-132 27-167 (373)
289 1xip_A Nucleoporin NUP159; bet 98.7 2E-07 6.7E-12 104.7 17.6 158 14-184 38-232 (388)
290 3rjv_A Putative SEL1 repeat pr 98.7 1.3E-07 4.4E-12 98.5 15.2 160 644-846 15-196 (212)
291 3g4e_A Regucalcin; six bladed 98.7 2.5E-06 8.5E-11 94.3 26.6 181 12-196 11-229 (297)
292 2r5s_A Uncharacterized protein 98.7 7.1E-08 2.4E-12 97.2 12.6 156 649-845 8-171 (176)
293 4gco_A Protein STI-1; structur 98.7 3.2E-08 1.1E-12 92.9 9.3 96 744-846 9-109 (126)
294 1rwi_B Serine/threonine-protei 98.7 4.5E-07 1.5E-11 98.9 19.9 178 15-196 25-222 (270)
295 2qfc_A PLCR protein; TPR, HTH, 98.7 8.1E-08 2.8E-12 106.2 14.0 174 648-846 76-265 (293)
296 2c2l_A CHIP, carboxy terminus 98.7 7.4E-08 2.5E-12 105.4 13.3 145 747-901 3-163 (281)
297 3gyz_A Chaperone protein IPGC; 98.7 3.8E-08 1.3E-12 95.2 9.5 95 745-846 33-132 (151)
298 1yr2_A Prolyl oligopeptidase; 98.7 1.8E-07 6.1E-12 118.5 18.2 178 12-195 161-392 (741)
299 3dsm_A Uncharacterized protein 98.7 2E-06 6.7E-11 96.6 24.6 176 13-195 83-301 (328)
300 3e5z_A Putative gluconolactona 98.7 5E-07 1.7E-11 100.1 19.4 178 12-196 67-286 (296)
301 3dsm_A Uncharacterized protein 98.7 1.6E-06 5.6E-11 97.2 23.1 178 13-197 43-254 (328)
302 4gcn_A Protein STI-1; structur 98.7 7.9E-08 2.7E-12 90.4 10.2 90 749-845 9-110 (127)
303 2gop_A Trilobed protease; beta 98.7 4.6E-07 1.6E-11 103.1 18.8 164 16-195 106-330 (347)
304 2r5s_A Uncharacterized protein 98.7 6.4E-08 2.2E-12 97.5 10.2 143 750-899 8-170 (176)
305 3no2_A Uncharacterized protein 98.7 1.9E-06 6.5E-11 93.5 22.6 166 14-183 37-230 (276)
306 3lvg_A Clathrin heavy chain 1; 98.7 7E-12 2.4E-16 135.9 -20.0 411 632-1090 39-535 (624)
307 3gw4_A Uncharacterized protein 98.6 2.9E-07 9.9E-12 95.3 15.0 162 657-846 2-175 (203)
308 2ghs_A AGR_C_1268P; regucalcin 98.6 5.4E-06 1.8E-10 92.9 26.4 175 16-195 51-259 (326)
309 4f3v_A ESX-1 secretion system 98.6 6.5E-07 2.2E-11 94.6 17.1 169 760-955 18-234 (282)
310 3sjl_D Methylamine dehydrogena 98.6 1.5E-05 5.2E-10 88.9 28.8 174 19-196 38-256 (386)
311 2z2n_A Virginiamycin B lyase; 98.6 8.7E-06 3E-10 90.1 26.9 180 10-194 11-211 (299)
312 3gw4_A Uncharacterized protein 98.6 1.6E-06 5.5E-11 89.6 19.5 165 800-1011 3-172 (203)
313 3c75_H MADH, methylamine dehyd 98.6 1.7E-05 5.8E-10 90.3 29.1 168 25-194 83-293 (426)
314 2vsy_A XCC0866; transferase, g 98.6 1.3E-07 4.5E-12 115.8 12.4 133 761-900 2-155 (568)
315 2z2n_A Virginiamycin B lyase; 98.6 1.5E-05 5.1E-10 88.1 28.2 178 12-194 55-253 (299)
316 4gco_A Protein STI-1; structur 98.6 2E-07 6.8E-12 87.4 10.8 101 647-780 13-113 (126)
317 2fo7_A Synthetic consensus TPR 98.6 2.6E-07 9E-12 87.9 11.5 123 692-845 3-130 (136)
318 3u3w_A Transcriptional activat 98.6 1.8E-06 6.2E-11 95.3 19.8 172 794-1012 80-263 (293)
319 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4E-07 1.4E-11 95.0 13.6 120 693-846 9-149 (213)
320 2xdw_A Prolyl endopeptidase; a 98.6 3E-06 1E-10 106.8 23.9 177 16-196 173-414 (710)
321 3mv2_A Coatomer subunit alpha; 98.6 3.2E-06 1.1E-10 88.3 19.5 183 1093-1304 120-311 (325)
322 2vsy_A XCC0866; transferase, g 98.6 2.1E-07 7.2E-12 114.0 12.6 147 660-846 2-156 (568)
323 3sjl_D Methylamine dehydrogena 98.5 5.5E-05 1.9E-09 84.4 30.5 133 60-195 38-207 (386)
324 2mad_H Methylamine dehydrogena 98.5 1.4E-05 4.7E-10 90.8 26.4 177 18-198 70-352 (373)
325 3hrp_A Uncharacterized protein 98.5 4.9E-06 1.7E-10 96.1 22.3 179 14-195 131-353 (409)
326 4b4t_Q 26S proteasome regulato 98.5 1.2E-06 4E-11 103.4 17.2 220 690-955 4-242 (434)
327 3dr2_A Exported gluconolactona 98.5 6.8E-06 2.3E-10 91.2 22.0 175 14-196 45-267 (305)
328 2c2l_A CHIP, carboxy terminus 98.5 4.3E-07 1.5E-11 99.3 11.9 101 647-780 4-104 (281)
329 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 9.7E-06 3.3E-10 90.5 23.3 177 14-195 18-255 (314)
330 4f3v_A ESX-1 secretion system 98.5 4.5E-07 1.5E-11 95.9 11.0 157 744-900 36-235 (282)
331 2fo7_A Synthetic consensus TPR 98.5 6.8E-07 2.3E-11 84.9 11.1 124 749-900 2-130 (136)
332 3iuj_A Prolyl endopeptidase; h 98.5 1.2E-06 4.2E-11 109.5 16.4 178 11-195 126-358 (693)
333 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 1E-05 3.5E-10 90.3 22.0 180 12-197 69-300 (314)
334 3upv_A Heat shock protein STI1 98.4 6.4E-07 2.2E-11 84.2 9.7 94 748-848 4-102 (126)
335 3gyz_A Chaperone protein IPGC; 98.4 7.9E-07 2.7E-11 85.9 10.5 95 872-1012 35-130 (151)
336 3hrp_A Uncharacterized protein 98.4 1.5E-05 5.2E-10 92.0 23.3 173 19-194 176-408 (409)
337 2qc5_A Streptogramin B lactona 98.4 6.5E-05 2.2E-09 83.0 27.8 177 12-194 60-258 (300)
338 2qc5_A Streptogramin B lactona 98.4 5.5E-05 1.9E-09 83.6 27.0 179 11-194 17-216 (300)
339 1a17_A Serine/threonine protei 98.4 1.3E-06 4.6E-11 86.6 12.3 100 648-780 14-113 (166)
340 2bkl_A Prolyl endopeptidase; m 98.4 3.3E-06 1.1E-10 105.9 18.8 175 17-197 171-398 (695)
341 1a17_A Serine/threonine protei 98.4 7.5E-07 2.6E-11 88.5 10.3 125 690-845 13-144 (166)
342 3g4e_A Regucalcin; six bladed 98.4 2.6E-05 8.9E-10 86.0 23.4 168 13-186 53-262 (297)
343 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-06 4.3E-11 84.7 10.5 95 745-846 18-117 (148)
344 3mkr_B Coatomer subunit alpha; 98.4 6.1E-06 2.1E-10 86.4 16.1 183 1093-1304 108-302 (320)
345 3mkq_B Coatomer subunit alpha; 98.4 1.6E-05 5.5E-10 76.1 17.5 118 797-970 13-130 (177)
346 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.1E-06 7E-11 89.6 12.8 133 649-817 8-149 (213)
347 4gcn_A Protein STI-1; structur 98.4 1.2E-06 4.2E-11 82.1 9.7 101 691-815 9-109 (127)
348 1p5q_A FKBP52, FK506-binding p 98.3 9.7E-07 3.3E-11 99.3 10.2 138 690-845 147-292 (336)
349 2lni_A Stress-induced-phosphop 98.3 1.9E-06 6.7E-11 81.6 10.9 95 745-846 13-112 (133)
350 3ro3_A PINS homolog, G-protein 98.3 2E-06 6.9E-11 84.8 11.4 137 690-846 9-157 (164)
351 2xcb_A PCRH, regulatory protei 98.3 1.9E-06 6.6E-11 82.8 10.5 93 747-846 17-114 (142)
352 1xip_A Nucleoporin NUP159; bet 98.3 5.9E-06 2E-10 92.7 15.8 127 11-149 86-230 (388)
353 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-06 5.2E-11 86.1 9.9 94 746-846 9-107 (164)
354 3ro3_A PINS homolog, G-protein 98.3 1.2E-05 4E-10 79.2 16.2 139 786-955 6-155 (164)
355 3n71_A Histone lysine methyltr 98.3 3.6E-06 1.2E-10 98.3 14.0 142 823-1012 314-461 (490)
356 3c75_H MADH, methylamine dehyd 98.3 1.6E-05 5.3E-10 90.7 18.8 181 18-199 122-405 (426)
357 1p5q_A FKBP52, FK506-binding p 98.3 1.4E-06 4.9E-11 97.9 10.2 130 748-898 147-290 (336)
358 2hr2_A Hypothetical protein; a 98.3 2.3E-06 8E-11 81.2 9.8 99 749-847 12-131 (159)
359 1hxi_A PEX5, peroxisome target 98.3 2.2E-06 7.7E-11 79.5 9.5 90 750-846 19-113 (121)
360 3dr2_A Exported gluconolactona 98.3 2E-05 6.9E-10 87.3 18.7 171 12-188 84-299 (305)
361 2qe8_A Uncharacterized protein 98.3 3.2E-05 1.1E-09 87.3 20.6 175 11-187 64-312 (343)
362 2lni_A Stress-induced-phosphop 98.3 2.2E-06 7.4E-11 81.2 9.1 113 690-833 16-133 (133)
363 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00012 4.1E-09 81.8 24.8 168 13-187 89-293 (326)
364 3q49_B STIP1 homology and U bo 98.3 3.6E-06 1.2E-10 80.3 10.5 96 745-847 6-106 (137)
365 2vyi_A SGTA protein; chaperone 98.2 3.6E-06 1.2E-10 79.3 10.4 92 748-846 12-108 (131)
366 1yr2_A Prolyl oligopeptidase; 98.2 2.9E-05 9.9E-10 98.1 21.3 175 17-197 212-442 (741)
367 2hr2_A Hypothetical protein; a 98.2 5.3E-06 1.8E-10 78.8 10.4 118 646-780 10-134 (159)
368 3mv2_B Coatomer subunit epsilo 98.2 2E-05 6.8E-10 84.5 16.1 158 735-899 85-279 (310)
369 3dra_A Protein farnesyltransfe 98.2 3.2E-05 1.1E-09 84.0 18.0 181 689-900 66-285 (306)
370 3upv_A Heat shock protein STI1 98.2 7.6E-06 2.6E-10 76.6 11.5 99 647-778 4-102 (126)
371 3sz7_A HSC70 cochaperone (SGT) 98.2 4.1E-06 1.4E-10 82.9 10.0 101 647-780 11-111 (164)
372 3n71_A Histone lysine methyltr 98.2 5.1E-06 1.7E-10 97.0 12.2 131 696-845 315-462 (490)
373 1ihg_A Cyclophilin 40; ppiase 98.2 4.1E-06 1.4E-10 95.1 11.1 132 690-839 223-362 (370)
374 1na0_A Designed protein CTPR3; 98.2 7.8E-06 2.7E-10 76.1 11.1 96 744-846 5-105 (125)
375 3mv2_B Coatomer subunit epsilo 98.2 3.1E-05 1.1E-09 83.0 16.9 215 620-844 15-279 (310)
376 2vyi_A SGTA protein; chaperone 98.2 7.6E-06 2.6E-10 77.0 11.1 119 647-805 12-130 (131)
377 2iwa_A Glutamine cyclotransfer 98.2 0.00034 1.2E-08 73.6 24.2 177 11-194 16-235 (266)
378 2fbn_A 70 kDa peptidylprolyl i 98.2 4E-06 1.4E-10 86.1 9.3 123 690-838 38-176 (198)
379 3dra_A Protein farnesyltransfe 98.2 8.5E-05 2.9E-09 80.6 20.1 205 757-1012 41-284 (306)
380 3rkv_A Putative peptidylprolyl 98.2 4.2E-06 1.4E-10 82.6 9.0 99 748-846 11-125 (162)
381 2e2e_A Formate-dependent nitri 98.2 2.4E-06 8.3E-11 85.9 7.2 94 745-845 41-142 (177)
382 4g26_A Pentatricopeptide repea 98.1 1.5E-05 5.2E-10 94.1 14.9 144 749-898 27-200 (501)
383 4g26_A Pentatricopeptide repea 98.1 9.4E-06 3.2E-10 95.8 13.1 104 762-871 84-202 (501)
384 2vgx_A Chaperone SYCD; alterna 98.1 4.7E-06 1.6E-10 80.6 8.8 95 690-815 21-115 (148)
385 1wao_1 Serine/threonine protei 98.1 8E-07 2.7E-11 105.0 3.8 125 690-845 6-137 (477)
386 1npe_A Nidogen, entactin; glyc 98.1 0.00081 2.8E-08 72.5 27.5 180 15-197 37-239 (267)
387 1elw_A TPR1-domain of HOP; HOP 98.1 9.6E-06 3.3E-10 74.6 9.9 92 748-846 4-100 (118)
388 1hxi_A PEX5, peroxisome target 98.1 4.7E-06 1.6E-10 77.3 7.5 95 691-816 18-112 (121)
389 2xcb_A PCRH, regulatory protei 98.1 6.7E-06 2.3E-10 79.0 8.8 94 691-815 19-112 (142)
390 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 6.7E-06 2.3E-10 96.7 10.6 127 748-895 268-407 (457)
391 2fbn_A 70 kDa peptidylprolyl i 98.1 6.3E-06 2.2E-10 84.6 9.1 124 749-893 39-176 (198)
392 2kck_A TPR repeat; tetratricop 98.1 6.5E-06 2.2E-10 74.9 7.9 93 747-846 5-105 (112)
393 1ihg_A Cyclophilin 40; ppiase 98.1 7.1E-06 2.4E-10 93.1 9.8 123 751-894 226-362 (370)
394 1na0_A Designed protein CTPR3; 98.1 1.3E-05 4.3E-10 74.7 9.8 111 691-832 10-125 (125)
395 2ece_A 462AA long hypothetical 98.1 0.00016 5.4E-09 81.1 19.9 168 15-184 139-399 (462)
396 2if4_A ATFKBP42; FKBP-like, al 98.1 2.6E-06 9E-11 95.7 5.9 141 691-845 180-326 (338)
397 2dba_A Smooth muscle cell asso 98.1 1.7E-05 5.9E-10 76.6 11.0 98 745-846 25-127 (148)
398 2e2e_A Formate-dependent nitri 98.0 8.2E-06 2.8E-10 82.0 8.0 115 758-900 20-142 (177)
399 2xev_A YBGF; tetratricopeptide 98.0 1.7E-05 5.8E-10 74.5 9.7 93 750-846 4-104 (129)
400 1elr_A TPR2A-domain of HOP; HO 98.0 2E-05 6.9E-10 74.0 10.2 92 748-846 4-107 (131)
401 1elw_A TPR1-domain of HOP; HOP 98.0 2E-05 6.9E-10 72.4 9.9 107 691-828 5-116 (118)
402 1mda_H Methylamine dehydrogena 98.0 5E-05 1.7E-09 85.0 14.6 178 18-199 69-349 (368)
403 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.2E-05 7.4E-10 92.4 12.3 110 647-780 268-383 (457)
404 3q49_B STIP1 homology and U bo 98.0 1.4E-05 4.8E-10 76.1 8.8 95 690-815 9-103 (137)
405 2xev_A YBGF; tetratricopeptide 98.0 3.5E-05 1.2E-09 72.3 11.5 98 691-815 3-102 (129)
406 3rkv_A Putative peptidylprolyl 98.0 1.7E-05 6E-10 78.1 9.5 109 647-780 11-129 (162)
407 3nol_A Glutamine cyclotransfer 98.0 0.00092 3.1E-08 69.2 22.1 168 11-185 38-244 (262)
408 1wao_1 Serine/threonine protei 98.0 1.3E-06 4.4E-11 103.3 0.7 120 752-899 10-136 (477)
409 1npe_A Nidogen, entactin; glyc 98.0 0.0012 3.9E-08 71.3 24.2 169 26-195 1-197 (267)
410 2qe8_A Uncharacterized protein 97.9 0.00071 2.4E-08 76.1 23.1 177 14-194 17-276 (343)
411 3lvg_A Clathrin heavy chain 1; 97.9 1.1E-08 3.7E-13 111.4 -15.6 269 689-1000 53-364 (624)
412 2ece_A 462AA long hypothetical 97.9 0.0015 5.1E-08 73.2 24.7 171 23-196 93-352 (462)
413 3qqz_A Putative uncharacterize 97.9 0.0029 1E-07 66.1 25.6 180 11-193 24-250 (255)
414 1elr_A TPR2A-domain of HOP; HO 97.9 1.3E-05 4.4E-10 75.4 7.2 118 690-831 4-125 (131)
415 4e6h_A MRNA 3'-END-processing 97.9 0.011 3.9E-07 71.7 34.5 64 645-717 64-130 (679)
416 2dba_A Smooth muscle cell asso 97.9 3.1E-05 1.1E-09 74.8 9.3 108 691-829 29-144 (148)
417 2if4_A ATFKBP42; FKBP-like, al 97.9 1.3E-05 4.3E-10 90.1 7.2 110 820-955 181-290 (338)
418 2kck_A TPR repeat; tetratricop 97.9 3E-05 1E-09 70.4 8.6 98 690-816 6-104 (112)
419 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.8E-10 74.3 5.0 83 760-846 2-89 (117)
420 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.0073 2.5E-07 68.8 29.9 103 26-131 53-171 (376)
421 4e6h_A MRNA 3'-END-processing 97.8 0.0022 7.4E-08 78.1 26.2 185 745-955 340-567 (679)
422 1fwx_A Nitrous oxide reductase 97.8 0.00027 9.1E-09 82.3 16.7 151 11-164 131-361 (595)
423 2p4o_A Hypothetical protein; p 97.8 0.0042 1.4E-07 68.4 25.0 178 14-194 32-240 (306)
424 3q7a_A Farnesyltransferase alp 97.8 0.00075 2.5E-08 73.9 18.2 180 689-899 87-328 (349)
425 3nok_A Glutaminyl cyclase; bet 97.8 0.0018 6.1E-08 67.0 19.9 161 16-184 57-253 (268)
426 2l6j_A TPR repeat-containing p 97.7 1.3E-05 4.5E-10 72.8 3.4 88 748-842 4-102 (111)
427 3mbr_X Glutamine cyclotransfer 97.7 0.0076 2.6E-07 61.9 24.1 168 11-185 16-223 (243)
428 3q7a_A Farnesyltransferase alp 97.7 0.0017 5.7E-08 71.1 19.7 136 756-898 62-233 (349)
429 1mda_H Methylamine dehydrogena 97.7 0.011 3.6E-07 66.2 26.6 97 65-164 30-158 (368)
430 3k9i_A BH0479 protein; putativ 97.7 1.5E-05 5.1E-10 73.4 2.8 64 745-815 24-87 (117)
431 1na3_A Designed protein CTPR2; 97.7 7.9E-05 2.7E-09 64.5 7.4 82 744-832 5-91 (91)
432 2l6j_A TPR repeat-containing p 97.7 1.5E-05 5.1E-10 72.5 2.5 101 691-816 5-105 (111)
433 2hz6_A Endoplasmic reticulum t 97.6 2.5E-05 8.5E-10 89.0 4.7 166 25-197 8-193 (369)
434 1klx_A Cysteine rich protein B 97.6 0.00013 4.5E-09 69.1 8.9 83 754-845 31-124 (138)
435 3iuj_A Prolyl endopeptidase; h 97.6 0.00066 2.2E-08 84.7 17.6 134 12-149 232-387 (693)
436 1fwx_A Nitrous oxide reductase 97.6 0.0016 5.6E-08 75.7 19.2 177 17-196 90-361 (595)
437 1klx_A Cysteine rich protein B 97.6 0.00028 9.5E-09 66.9 10.4 105 762-900 9-124 (138)
438 3ma5_A Tetratricopeptide repea 97.6 0.00012 4E-09 64.9 7.2 64 745-815 4-67 (100)
439 2fp8_A Strictosidine synthase; 97.6 0.0051 1.8E-07 68.3 21.9 168 14-183 19-246 (322)
440 3qww_A SET and MYND domain-con 97.5 0.00023 7.7E-09 81.6 10.7 96 885-1011 310-407 (433)
441 3v64_C Agrin; beta propeller, 97.5 0.027 9.1E-07 63.0 27.1 180 14-196 34-234 (349)
442 2xe4_A Oligopeptidase B; hydro 97.5 0.0022 7.6E-08 80.4 19.7 139 11-154 170-340 (751)
443 3v65_B Low-density lipoprotein 97.5 0.011 3.8E-07 67.2 23.9 149 14-163 116-276 (386)
444 3v64_C Agrin; beta propeller, 97.5 0.019 6.4E-07 64.3 25.2 148 15-163 74-233 (349)
445 3qww_A SET and MYND domain-con 97.5 0.0002 6.8E-09 82.1 9.0 88 760-847 310-411 (433)
446 1ijq_A LDL receptor, low-densi 97.4 0.035 1.2E-06 61.1 26.6 149 14-163 30-194 (316)
447 2kat_A Uncharacterized protein 97.4 0.00054 1.9E-08 62.5 9.1 64 745-815 16-79 (115)
448 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.045 1.5E-06 62.2 27.4 101 455-560 272-375 (376)
449 2kat_A Uncharacterized protein 97.4 0.00026 8.8E-09 64.7 6.7 75 765-846 2-81 (115)
450 3qwp_A SET and MYND domain-con 97.4 0.00076 2.6E-08 77.5 12.1 95 826-955 295-397 (429)
451 1ijq_A LDL receptor, low-densi 97.3 0.058 2E-06 59.3 26.6 167 28-195 3-194 (316)
452 1na3_A Designed protein CTPR2; 97.3 0.00043 1.5E-08 59.7 7.3 82 691-803 10-91 (91)
453 3v65_B Low-density lipoprotein 97.3 0.029 1E-06 63.7 24.7 177 16-195 79-276 (386)
454 3qwp_A SET and MYND domain-con 97.3 0.00082 2.8E-08 77.3 11.5 89 758-846 297-399 (429)
455 1zu2_A Mitochondrial import re 97.3 0.00018 6.1E-09 68.1 4.6 81 759-846 13-119 (158)
456 2fp8_A Strictosidine synthase; 97.3 0.026 8.8E-07 62.6 23.2 132 15-149 81-245 (322)
457 1zu2_A Mitochondrial import re 97.3 0.00025 8.5E-09 67.2 5.4 82 728-816 14-118 (158)
458 2iwa_A Glutamine cyclotransfer 97.2 0.013 4.5E-07 61.5 18.9 147 45-197 9-182 (266)
459 3p5b_L Low density lipoprotein 97.1 0.11 3.7E-06 59.3 26.6 150 13-163 111-276 (400)
460 2kc7_A BFR218_protein; tetratr 97.1 0.00049 1.7E-08 60.6 5.4 57 752-815 4-61 (99)
461 4a2l_A BT_4663, two-component 97.1 1.2 4.1E-05 56.2 46.7 173 14-197 43-245 (795)
462 3nol_A Glutamine cyclotransfer 97.1 0.019 6.5E-07 59.4 17.7 144 46-196 32-201 (262)
463 4a2l_A BT_4663, two-component 97.1 1.2 4.2E-05 56.1 44.9 174 16-196 175-386 (795)
464 1dce_A Protein (RAB geranylger 97.1 0.0012 4E-08 79.3 9.9 96 744-846 59-172 (567)
465 3ma5_A Tetratricopeptide repea 97.1 0.00038 1.3E-08 61.5 4.2 67 690-780 7-73 (100)
466 3sov_A LRP-6, low-density lipo 97.1 0.12 4E-06 56.7 25.2 147 16-163 37-196 (318)
467 3dss_A Geranylgeranyl transfer 97.0 0.017 5.8E-07 62.9 17.8 134 759-899 40-219 (331)
468 3dss_A Geranylgeranyl transfer 97.0 0.0087 3E-07 65.2 15.4 148 744-898 60-263 (331)
469 1dce_A Protein (RAB geranylger 97.0 0.0028 9.6E-08 75.9 12.6 158 761-947 41-244 (567)
470 3tc9_A Hypothetical hydrolase; 97.0 0.02 6.9E-07 66.0 19.4 110 14-125 137-259 (430)
471 3hxj_A Pyrrolo-quinoline quino 97.0 0.012 4.1E-07 65.6 16.9 169 16-194 139-322 (330)
472 3p5b_L Low density lipoprotein 96.9 0.14 4.9E-06 58.3 25.2 168 27-196 84-277 (400)
473 2p4o_A Hypothetical protein; p 96.9 0.093 3.2E-06 57.4 22.7 169 14-187 72-279 (306)
474 4hw6_A Hypothetical protein, I 96.9 0.068 2.3E-06 61.6 22.1 147 14-163 139-303 (433)
475 3amr_A 3-phytase; beta-propell 96.8 0.16 5.6E-06 54.9 22.6 169 25-195 39-262 (355)
476 3nok_A Glutaminyl cyclase; bet 96.8 0.026 8.8E-07 58.4 15.7 144 46-197 44-211 (268)
477 2p9w_A MAL S 1 allergenic prot 96.8 0.29 9.8E-06 52.5 24.0 141 56-197 14-216 (334)
478 3m0c_C LDL receptor, low-densi 96.7 0.3 1E-05 60.5 27.3 149 14-163 424-588 (791)
479 1kb0_A Quinohemoprotein alcoho 96.6 0.052 1.8E-06 66.8 20.0 150 17-169 246-512 (677)
480 2uy1_A Cleavage stimulation fa 96.6 0.74 2.5E-05 53.9 29.1 29 927-955 211-239 (493)
481 3hxj_A Pyrrolo-quinoline quino 96.6 0.035 1.2E-06 61.7 17.0 162 27-194 108-282 (330)
482 3ei3_A DNA damage-binding prot 96.6 3.2 0.00011 53.9 40.9 134 417-565 863-1001(1158)
483 3tc9_A Hypothetical hydrolase; 96.6 0.037 1.3E-06 63.9 17.2 137 56-195 138-300 (430)
484 3mbr_X Glutamine cyclotransfer 96.5 0.18 6.1E-06 51.7 19.6 145 46-196 10-179 (243)
485 3v9f_A Two-component system se 96.5 3 0.0001 52.3 51.7 177 14-197 66-288 (781)
486 2kc7_A BFR218_protein; tetratr 96.5 0.0058 2E-07 53.5 7.5 63 694-780 4-67 (99)
487 3qqz_A Putative uncharacterize 96.3 0.24 8.1E-06 51.6 19.7 141 54-196 26-204 (255)
488 2uy1_A Cleavage stimulation fa 96.3 2.2 7.5E-05 49.9 30.5 146 745-899 210-380 (493)
489 3sov_A LRP-6, low-density lipo 96.3 0.21 7.1E-06 54.7 20.2 167 28-196 6-197 (318)
490 2p9w_A MAL S 1 allergenic prot 96.3 0.27 9.3E-06 52.7 19.9 151 11-163 10-214 (334)
491 3ly7_A Transcriptional activat 96.2 0.059 2E-06 58.8 14.8 109 763-900 214-337 (372)
492 1yiq_A Quinohemoprotein alcoho 96.2 0.15 5.2E-06 62.8 20.5 71 18-90 239-342 (689)
493 2v5f_A Prolyl 4-hydroxylase su 96.2 0.016 5.3E-07 51.3 8.5 68 748-815 5-72 (104)
494 1kb0_A Quinohemoprotein alcoho 96.2 0.15 5E-06 62.8 20.2 163 35-199 189-510 (677)
495 3s94_A LRP-6, low-density lipo 96.2 3.5 0.00012 49.6 52.4 149 14-163 40-201 (619)
496 3v9f_A Two-component system se 96.2 4.4 0.00015 50.8 47.3 174 14-197 19-240 (781)
497 3m0c_C LDL receptor, low-densi 96.1 0.87 3E-05 56.4 26.6 167 28-196 397-589 (791)
498 3ffl_A Anaphase-promoting comp 96.0 0.056 1.9E-06 50.7 11.5 76 874-955 64-148 (167)
499 4hw6_A Hypothetical protein, I 96.0 0.17 5.7E-06 58.3 18.1 146 14-162 182-372 (433)
500 3ffl_A Anaphase-promoting comp 96.0 0.025 8.6E-07 53.0 8.8 109 787-898 18-147 (167)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.7e-38 Score=407.05 Aligned_cols=673 Identities=13% Similarity=0.092 Sum_probs=431.5
Q ss_pred ccceecccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeE
Q psy12365 2 DKLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAV 79 (1324)
Q Consensus 2 ~~~~~~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i 79 (1324)
+........+|.+.|.+++||| +|++|++++.+|.|++||. +|+.+..+. |.+.|.+++|+|+|++|++++. ||.|
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i 79 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRI 79 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEE
T ss_pred CcccceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeE
Confidence 3333334468999999999999 9999999999999999996 677888887 8899999999999999999998 9999
Q ss_pred EEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC--CeEEEEe-cCCcEEEEEEcC-CCCEEEEE
Q psy12365 80 NVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG--KLIDKIT-LPGLCIVMDWDS-EGDLLGII 150 (1324)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g--~~~~~~~-~~~~i~~~~~~~-~g~~l~~~ 150 (1324)
++||+.+++....+.+|.+.|++++|+|+++.|++ .|++||... .....+. |.+.|.+++|+| ++..+++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~- 158 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS- 158 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE-
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE-
Confidence 99999999888888899999999999999999888 899999873 3334443 788999999999 8889999
Q ss_pred EcCCCcEEEeecccC-----------CCeeEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeecC---Ce--------
Q psy12365 151 SSNSSAVNVWTLLTY-----------TLGERISWSD--DGQLLAVTTSGGSVKIYLSKLPKLVVANN---GK-------- 206 (1324)
Q Consensus 151 ~~~~~~i~iwd~~~~-----------~~i~~~~~s~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---~~-------- 206 (1324)
++.|+.|++||+.+. ..+..+.|+| ++.++++++.||.|++|+........... ..
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 999999999998621 6789999999 99999999999999999976553322111 11
Q ss_pred ----EEeecCcceEEEEeeccccCCCCcccceeccccCCccccccceEEeecCce--eecccccceeeeeeeecccCCCC
Q psy12365 207 ----IAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKI--AILSSLNQVSVYLRSIERKGTPW 280 (1324)
Q Consensus 207 ----~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~ 280 (1324)
++..+.-..+.++ +... +.+.. .+......+.......++.. +.....+.+.++..... ...
T Consensus 239 ~~~~l~~~~~dg~v~vw-d~~~--~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 306 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIW-NSST--YKVEK------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND--EPT- 306 (814)
T ss_dssp SSSEEEEEETTSCEEEE-ETTT--CSEEE------EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC--SCC-
T ss_pred CCCEEEEEeCCCeEEEE-ECCC--CcEEE------EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC--Cce-
Confidence 1111111122221 1000 00000 00000000000000112221 11111222222211110 000
Q ss_pred cceeeecccCcceeeecCceeEeeec----CeEEEE------EccCCCCCCcccccccccccccccccchhhhhhhcccc
Q psy12365 281 TNFIIETEIEPSFLNMGPCHVAVGMN----NRVWVY------GLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANY 350 (1324)
Q Consensus 281 ~~~~i~~~~~~~~~~~~~~~~a~~~~----~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 350 (1324)
. .+.. ....++.+.. ..+... ....... ..........+...+.++.++++.
T Consensus 307 --~--~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 307 --L--SLDP-------VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEP-------LSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp --E--EECS-------SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSC-------BCCCCEEECCCSSCCSEEEECTTS
T ss_pred --e--EECC-------CCCEEEECcccccceeeeeeecccccccccCcc-------ceeeeecCCCCccCCceeEECCCC
Confidence 0 0000 1111111110 011111 1111110 111111122233345555666543
Q ss_pred ccccccccchhcccCCCccccchhhhcccccccccccccCCCCCCcccccccceeecc--cceeeee-eCCeEEEEEecC
Q psy12365 351 SSALVNSRIQLHYLGDNQKTIPDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLN--ANYSSAL-VNSRIQLHYLGD 427 (1324)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~~~~l~~i~~ 427 (1324)
....+ .+++...+++.. .......+.+..+..+ +.+.++. .++.+.+|....
T Consensus 369 ~~la~--------~~~~~~~i~~~~-----------------~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~ 423 (814)
T 3mkq_A 369 RFVTV--------VGDGEYVIYTAL-----------------AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK 423 (814)
T ss_dssp SEEEE--------EETTEEEEEETT-----------------TTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTE
T ss_pred CEEEE--------ecCCEEEEEECc-----------------cccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC
Confidence 32211 112222222110 0011112344444443 3444444 467777774221
Q ss_pred CCCCCCccccccccccccCCCCCcceeEEecCc-----ceEEEEEecCcEEEEEeCCceeeeeecCCCCeeEEeeCCCcc
Q psy12365 428 NQKTIPDAFVDKESKLFPESGEKYTIMTQAMSE-----EFLFFATSEYELKIFSLSEWKFVSGYKHSDKIKSIYPDIYGI 502 (1324)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~li~~~~~g~i~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~ 502 (1324)
+ +...+.++.+++ ..+++++.+|+|++|++.++..+..+..... .+.|+|+|+
T Consensus 424 ~--------------------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~ 481 (814)
T 3mkq_A 424 E--------------------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGE 481 (814)
T ss_dssp E--------------------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSS
T ss_pred C--------------------ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCC
Confidence 1 112234444443 3788889999999999999988888775443 899999999
Q ss_pred EEEEEE-----eCCCeEEEecCC-------------------CceeccCCCCCCcceEEEecCCCCCcEEEEEe-CCeEE
Q psy12365 503 CLVLIE-----MNNTGFLYHTAM-------------------DYLLPIPEFPPATEEVLWDTVPVDRNVFVCCS-KTSVV 557 (1324)
Q Consensus 503 ~l~~~~-----~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~w~~~~~~~~l~v~~~-~~~i~ 557 (1324)
+|++.+ ..+.++++.... +....+.++...+.+..|+ .++++... .+++.
T Consensus 482 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~-----~~~~i~~t~~~~~~ 556 (814)
T 3mkq_A 482 LVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV-----GDVFIFTTATNRLN 556 (814)
T ss_dssp EEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE-----TTEEEEECTTSEEE
T ss_pred EEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe-----CCEEEEEcCCCeEE
Confidence 999995 334456553321 1111122223446677886 35666655 45555
Q ss_pred EEEEccccccCCeeEEeeceecCCCCcceEeeCCEEEEEecCCceeEEEeccccc------------------ccCCC--
Q psy12365 558 TYLFMPNYYEGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLETHKT------------------TMHNP-- 617 (1324)
Q Consensus 558 v~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~g~~~~~~l~~~~~------------------~~~~~-- 617 (1324)
.+. +.+...+....-+-.........+.+.+...++++....++.... +...+
T Consensus 557 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~ 629 (814)
T 3mkq_A 557 YFV-------GGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGK 629 (814)
T ss_dssp EEE-------TTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCH
T ss_pred EEe-------CCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCch
Confidence 543 333222211111000000112445566777888877766643111 00001
Q ss_pred ----------------------CchHHHHHHHHHHhhcHHHHHHHHHhhCCHHHHHHHHHHHHhcCCHHHHHHHHHHccc
Q psy12365 618 ----------------------KQTLDISLHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDE 675 (1324)
Q Consensus 618 ----------------------~~~~~~~~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~ 675 (1324)
.......|..++..|++++|+++++.++++..|..+|+.+++.++++.|++||.++++
T Consensus 630 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 630 DSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 0122346778899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCC--chHHHHH
Q psy12365 676 AGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQ--TPIISCD 753 (1324)
Q Consensus 676 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~--~~~~~~~ 753 (1324)
+..+.++..... ..+....++.++...|+++.|..+|.+.+++++|+++|.+.++|++|+.+++...+.. ++.+...
T Consensus 710 ~~~l~~l~~~~~-~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~ 788 (814)
T 3mkq_A 710 LESLFLLHSSFN-NKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTK 788 (814)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhhHHHHHHcC-CHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999999888 7788889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCHHHH
Q psy12365 754 YAQQLEMTGQHAQA 767 (1324)
Q Consensus 754 ~~~~~~~~g~~~~A 767 (1324)
++..++..|+++.|
T Consensus 789 ~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 789 WKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHTTTCHHHH
T ss_pred HHHHHHhccchhHH
Confidence 99999999986544
No 2
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-30 Score=335.91 Aligned_cols=686 Identities=11% Similarity=0.059 Sum_probs=406.3
Q ss_pred EEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeC
Q psy12365 48 IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNK 121 (1324)
Q Consensus 48 ~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~ 121 (1324)
...+. |.+.|.+++|+|||++|++++. ||.|++||..+++....+.+|.+.|.+++|+|+|++|++ .|++||.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~-~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLY-SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeC-CCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 44555 8899999999999999999998 999999999999888888899999999999999999988 8999997
Q ss_pred C-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEcC-CCCEEEEEeCCC
Q psy12365 122 H-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWSD-DGQLLAVTTSGG 187 (1324)
Q Consensus 122 ~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~-~~~~l~~~~~dg 187 (1324)
. |+....+. |.+.|++++|+|+|++|++ ++.|+.|++||+.+. ..|.++.|+| ++..+++++.||
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEE-EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEE-EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 6 77766666 8889999999999999999 999999999998732 6799999999 889999999999
Q ss_pred cEEEEEcCCCceeeecCCeEEeecCcceEEEEeeccccCCCCcccceeccccCCccccccceEEeecCceee-cccccce
Q psy12365 188 SVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAI-LSSLNQV 266 (1324)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 266 (1324)
.|++|+............. .......+.. .+.. ++...+ .+....+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~-~~~~------------------------------~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTG--QERGVNYVDY-YPLP------------------------------DKPYMITASDDLTI 210 (814)
T ss_dssp EEEEEETTCSSCSEEEECC--CTTCCCEEEE-CCST------------------------------TCCEEEEECTTSEE
T ss_pred eEEEEECCCCcceeEEecC--CCCCEEEEEE-EECC------------------------------CCCEEEEEeCCCEE
Confidence 9999997643221100000 0000111111 0000 011111 1111223
Q ss_pred eeeeeeecccCCCCcceeeecc-cCcceeeecC--ceeEe-eecCeEEEEEccCCCCCCcccccccccccccccccchhh
Q psy12365 267 SVYLRSIERKGTPWTNFIIETE-IEPSFLNMGP--CHVAV-GMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTIT 342 (1324)
Q Consensus 267 ~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~--~~~a~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 342 (1324)
.+|...... .. ..+... .....+.+.| ..+++ +.++.+.+|+..+... ......+.+.+.
T Consensus 211 ~~~d~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~v~ 274 (814)
T 3mkq_A 211 KIWDYQTKS--CV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------EKTLNVGLERSW 274 (814)
T ss_dssp EEEETTTTE--EE---EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE-----------EEEECCSSSSEE
T ss_pred EEEECCCCc--EE---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEeecCCCcEE
Confidence 333211110 00 111111 1112233332 23444 4478899999876542 122334455677
Q ss_pred hhhhccccccc-ccc---ccchhcccCCCccc--cc-hhh--------hccccccc-----ccccccCCCC--CC---cc
Q psy12365 343 SLLLNANYSSA-LVN---SRIQLHYLGDNQKT--IP-DAF--------IKNRNYFA-----HTLVYKPQLL--GD---KE 397 (1324)
Q Consensus 343 ~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~--i~-~~~--------~~~~~~~~-----~~~~~~~~~~--~~---~~ 397 (1324)
++.++++.... +.. +...++..+..... +. +.. ......+. ...+...... .. ..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (814)
T 3mkq_A 275 CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354 (814)
T ss_dssp EEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECC
T ss_pred EEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCC
Confidence 77766654321 111 11111111111000 00 000 00000000 0000000000 00 01
Q ss_pred cccccceee--cccceeeeeeCCeEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecC--cceEEEEEecCcEE
Q psy12365 398 YLGTITSLL--LNANYSSALVNSRIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMS--EEFLFFATSEYELK 473 (1324)
Q Consensus 398 ~~~~i~~~~--~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~li~~~~~g~i~ 473 (1324)
....+..+. .++.++++..++++.+|.+.... . .....+++++++ ++.+++++.+|.|.
T Consensus 355 ~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~----------~-------~~~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 355 VDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWR----------N-------KAFGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTEEEEEETTTTE----------E-------EEEEECSEEEECTTSSCEEEECTTCCEE
T ss_pred CccCCceeEECCCCCEEEEecCCEEEEEECcccc----------c-------cCCCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 112234444 44567777789999998865421 0 011346666665 56799999999999
Q ss_pred EEEeCCceeeeeecCCCCeeEEeeCCCc---cEEEEEEeCCCeEEEecCCCceeccCCCCCCcceEEEecCCCCCcEEEE
Q psy12365 474 IFSLSEWKFVSGYKHSDKIKSIYPDIYG---ICLVLIEMNNTGFLYHTAMDYLLPIPEFPPATEEVLWDTVPVDRNVFVC 550 (1324)
Q Consensus 474 ~~~l~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~v~ 550 (1324)
+|+.- -.|...+..+.++|+| .+|++.+.++.+++|++.+++.+...... ...+.|+ +++..+++
T Consensus 418 l~~~~-------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~--~~~v~~s---~dg~~la~ 485 (814)
T 3mkq_A 418 YYKNF-------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN--AKDVIWS---DNGELVMI 485 (814)
T ss_dssp EEETT-------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC--EEEEEEC---TTSSEEEE
T ss_pred EEECC-------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC--CCEEEEc---CCCCEEEE
Confidence 99532 2255677888899998 58888999999999999888775443322 2367777 66677777
Q ss_pred E------eCCeEEEEEEccccc------------cCC--eeEEeeceecCCCCcceEeeCCEEEEEecCCceeE------
Q psy12365 551 C------SKTSVVTYLFMPNYY------------EGP--KIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLD------ 604 (1324)
Q Consensus 551 ~------~~~~i~v~~~~~~~i------------~~~--~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~g~~~~------ 604 (1324)
. .++.++++.+++... +|. ....+. .+.+......+..+.++..+..+++..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~ 563 (814)
T 3mkq_A 486 VNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY--ELSESITSGKWVGDVFIFTTATNRLNYFVGGKT 563 (814)
T ss_dssp EECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE--EECSCCSEEEEETTEEEEECTTSEEEEEETTEE
T ss_pred EEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee--EeccEEEeeEEeCCEEEEEcCCCeEEEEeCCee
Confidence 7 677788776653210 000 000000 001100011111111111110111111
Q ss_pred --EE-ec-----------cccc-c-cCC------CCchHHHHHHHHHHhhcHHHHHH-HHHhhCCHHHHHHHHHHHHhcC
Q psy12365 605 --LT-LE-----------THKT-T-MHN------PKQTLDISLHKVLKLLNWKEAWN-ICAVLNQSETWRSFAEACLQNL 661 (1324)
Q Consensus 605 --~~-l~-----------~~~~-~-~~~------~~~~~~~~~~~~l~~~~~~~A~~-~~~~~~~~~~~~~l~~~~l~~~ 661 (1324)
+. ++ .... + ... ........+..++..+++++|.+ ++..+++......+.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~------- 636 (814)
T 3mkq_A 564 YNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIA------- 636 (814)
T ss_dssp EEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHH-------
T ss_pred EEEEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHH-------
Confidence 00 00 0000 0 000 01222334455555555555554 433333111112222
Q ss_pred CHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHh
Q psy12365 662 EFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATS 741 (1324)
Q Consensus 662 ~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~ 741 (1324)
..+...|..++|.+.. .++....++....|+|++|+++++.
T Consensus 637 ------------------------------------~~l~~~~~~~~a~~~~---~~~~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 637 ------------------------------------RFLEGQEYYEEALNIS---PDQDQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp ------------------------------------HHHHHTTCHHHHHHHC---CCHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ------------------------------------HHHHhCCChHHheecC---CCcchheehhhhcCCHHHHHHHHHh
Confidence 2233344555554433 2344445566677777777777765
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHH
Q psy12365 742 LGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821 (1324)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 821 (1324)
. ..+..+..+|+.+...|+++.|++.|.+ .|+++.+..++....+.+.+
T Consensus 678 ~---~~~~~W~~la~~al~~~~~~~A~~~y~~----------------------------~~d~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 678 E---SAEMKWRALGDASLQRFNFKLAIEAFTN----------------------------AHDLESLFLLHSSFNNKEGL 726 (814)
T ss_dssp C---CCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------HTCHHHHHHHHHHTTCHHHH
T ss_pred h---CcHhHHHHHHHHHHHcCCHHHHHHHHHH----------------------------ccChhhhHHHHHHcCCHHHH
Confidence 4 3357889999999999999999877776 45566666665555556667
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC-CH----HHHHHHHHHHHHcCCHHHH
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SA----TTFIQYAKAKEAMGSYRES 892 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~----~~~~~~a~~~~~~g~~~~A 892 (1324)
..++......|++..|..+|.+.+++++++++|.++++|++|..+++++. .. .+...|+..++..|+++.|
T Consensus 727 ~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 727 VTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 77899999999999999999999999999999999999999999999987 44 6777889999999886544
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=6.5e-29 Score=308.88 Aligned_cols=491 Identities=13% Similarity=0.195 Sum_probs=310.3
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
++|.+.|++++||| ||++||+++.|++|+|||.+++++..+. |.+.|.+++|+|||++|++++. |+.|+|||.. ++
T Consensus 13 ~GH~~~V~~~a~sp-dg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~-d~~i~vWd~~-~~ 89 (577)
T 2ymu_A 13 EAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRN-GQ 89 (577)
T ss_dssp CCCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT-SC
T ss_pred CCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEECC-CC
Confidence 68999999999999 9999999999999999999999999888 8999999999999999999998 9999999975 55
Q ss_pred EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe---------------------------------
Q psy12365 89 RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--------------------------------- 130 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--------------------------------- 130 (1324)
....+.+|.+.|.+++|+|+++.|++ .+++|+..+.......
T Consensus 90 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (577)
T 2ymu_A 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccc
Confidence 66677899999999999999999988 7888886533222211
Q ss_pred ---------cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy12365 131 ---------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVKIY 192 (1324)
Q Consensus 131 ---------~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~ 192 (1324)
+.+.+.++.|+|+|.++++ ++.|+.|++||.... ..|.+++|+|+|++|++++.||.+++|
T Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 170 GQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeeeccCCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4567889999999999999 999999999997621 679999999999999999999999999
Q ss_pred EcCCCceeeecC--Ce---EEeecCcceEEEEeeccccCCCCccc-ceeccccCCccccccceEEeecCceee-cccccc
Q psy12365 193 LSKLPKLVVANN--GK---IAILSSLNQVSVYLRSIERKGTPWTN-FIIETEIEPSWREYHGLVVANNGKIAI-LSSLNQ 265 (1324)
Q Consensus 193 ~~~~~~~~~~~~--~~---~~~~~~~~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 265 (1324)
+.....+....+ .. +.+..+...+.....+.. ..-|.. ......+..-...+.......++..+. .+....
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~--i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 249 NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT--VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp CTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE--EEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 976543322111 11 111111111111000000 000000 000000000000000111111233222 222334
Q ss_pred eeeeeeeecccCCCCcceeeecc-cCcceeeecC--ceeEeee-cCeEEEEEccCCCCCCcccccccccccccccccchh
Q psy12365 266 VSVYLRSIERKGTPWTNFIIETE-IEPSFLNMGP--CHVAVGM-NNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTI 341 (1324)
Q Consensus 266 ~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~--~~~a~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (1324)
+.+|...... . ..+... .....+++.| ..++.+. ++.+.+|+..... ......|.+.|
T Consensus 327 i~~w~~~~~~---~---~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~------------~~~~~~~~~~v 388 (577)
T 2ymu_A 327 VKLWNRNGQH---L---QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL------------LQTLTGHSSSV 388 (577)
T ss_dssp EEEEETTSCE---E---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE------------EEEEECCSSCE
T ss_pred EEEEeCCCCe---e---EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE------------EEEecCCCCCe
Confidence 5555321110 0 111111 1112233332 3555554 6688899854321 22344567778
Q ss_pred hhhhhccccccccccccchhcccCCCccccchhhhcccccccccccccCCCCCCcccccccceeecc--cceeeee-eCC
Q psy12365 342 TSLLLNANYSSALVNSRIQLHYLGDNQKTIPDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLN--ANYSSAL-VNS 418 (1324)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~ 418 (1324)
.++.++++.......+ .|..+.+++.... . . -....+...|..+.++ ..++++. .++
T Consensus 389 ~~~~~s~dg~~l~~~~-------~d~~v~~~~~~~~-------~--~----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 389 RGVAFSPDGQTIASAS-------DDKTVKLWNRNGQ-------L--L----QTLTGHSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp EEEEECTTSSCEEEEE-------TTSEEEEECTTCC-------E--E----EEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEECCCCCEEEEEe-------CCCEEEEEeCCCC-------E--E----EEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence 8888877654332211 1222222221100 0 0 0001123345455443 4455443 578
Q ss_pred eEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecCc--ceEEEEEecCcEEEEEeCCceeeeeec-CCCCeeEE
Q psy12365 419 RIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMSE--EFLFFATSEYELKIFSLSEWKFVSGYK-HSDKIKSI 495 (1324)
Q Consensus 419 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~li~~~~~g~i~~~~l~~~~~~~~~~-~~~~i~~i 495 (1324)
.+.+|...... ...+ ..+...|.++++++ .++++++.+|+|++|+.. ++.+..+. |...|..+
T Consensus 449 ~v~~w~~~~~~-----------~~~~--~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 449 TVKLWNRNGQL-----------LQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGV 514 (577)
T ss_dssp EEEEEETTSCE-----------EEEE--ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCE-----------EEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEE
Confidence 88888854321 1112 23456688877764 588999999999999964 45555554 88999999
Q ss_pred eeCCCccEEEEEEeCCCeEEEecCCCceeccCCCCCCcceEEEecCCCCCcEEEEEeCCeEEEEE
Q psy12365 496 YPDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEFPPATEEVLWDTVPVDRNVFVCCSKTSVVTYL 560 (1324)
Q Consensus 496 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~ 560 (1324)
+++|+|.+|+..+.++.+++|+........+..+...+..+.|.. ++..++.+..++.+.+|.
T Consensus 515 ~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~--dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 515 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999974443344455566778888875 556666666777888883
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=3.9e-27 Score=292.78 Aligned_cols=422 Identities=12% Similarity=0.139 Sum_probs=275.3
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-C--cEEEEEe-CCC------------------------------
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-G--KLIDKIT-LPG------------------------------ 55 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~--~~~~~~~-~~~------------------------------ 55 (1324)
.+|...|.+++|+| +|++||+++.|++|+|||.. + .....+. |.+
T Consensus 56 ~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 56 TEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred cCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 58999999999999 99999999999999999972 2 2222222 333
Q ss_pred --------------CEEEEEEcCCCC-EEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----E
Q psy12365 56 --------------LCIVMDWDSEGD-LLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----S 115 (1324)
Q Consensus 56 --------------~i~~i~~~~d~~-~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~ 115 (1324)
.|.+++|+|++. .|++++. |++|++||..+++....+.+|.+.|.+++|+|+|++|++ +
T Consensus 135 d~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~-D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~ 213 (611)
T 1nr0_A 135 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 213 (611)
T ss_dssp TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCcceecCCCCCceEEEECCCCCeEEEEEeC-CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc
Confidence 455666666655 4667776 899999999888888888999999999999999999988 8
Q ss_pred EEEEeCC-CCeEEEE--------ecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------------------
Q psy12365 116 VSIYNKH-GKLIDKI--------TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY--------------------- 165 (1324)
Q Consensus 116 i~v~d~~-g~~~~~~--------~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~--------------------- 165 (1324)
|++||.. |+....+ .|.+.|.+++|+|+|++|++ ++.|++|++||+.+.
T Consensus 214 i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS-ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE-EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 9999965 7776666 37889999999999999999 999999999997621
Q ss_pred --------------------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeecCCeEEeecCc
Q psy12365 166 --------------------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSL 213 (1324)
Q Consensus 166 --------------------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1324)
..|++++|+|||++|++++.||.|++|++............ .....
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~--h~~~v 370 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMI 370 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS--CSSCE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC--CcceE
Confidence 35778999999999999999999999998754332111000 00000
Q ss_pred ceEEEEeeccccCCCCcccceeccccCCccccccceEEeecCceeecccccceeeeeeeecccCCCCcceeeecccCcce
Q psy12365 214 NQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSF 293 (1324)
Q Consensus 214 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (1324)
..+.. ...+.++..+....+.++.......... ......+...+..
T Consensus 371 ~~~~~---------------------------------s~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 371 TGIKT---------------------------------TSKGDLFTVSWDDHLKVVPAGGSGVDSS-KAVANKLSSQPLG 416 (611)
T ss_dssp EEEEE---------------------------------CTTSCEEEEETTTEEEEECSSSSSSCTT-SCCEEECSSCEEE
T ss_pred EEEEE---------------------------------CCCCcEEEEEcCCceEEeecCCcccccc-ceeeeecCCCCcE
Confidence 00000 0011111112222233332111100000 0000111122222
Q ss_pred eeecCc--eeEeeecCeEEEEEccCCCCCCcccccccccccccccccchhhhhhhccccccccccccchhcccCCCcccc
Q psy12365 294 LNMGPC--HVAVGMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTI 371 (1324)
Q Consensus 294 ~~~~~~--~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 371 (1324)
+++.+. .++++.++.+.+|+... . ..
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~-~---------~~------------------------------------------ 444 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGK-L---------TE------------------------------------------ 444 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTE-E---------EE------------------------------------------
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCc-e---------ee------------------------------------------
Confidence 233222 34444455555554111 0 00
Q ss_pred chhhhcccccccccccccCCCCCCccccccccee--ecccceeeee-eCCeEEEEEecCCCCCCCccccccccccccCCC
Q psy12365 372 PDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSL--LLNANYSSAL-VNSRIQLHYLGDNQKTIPDAFVDKESKLFPESG 448 (1324)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 448 (1324)
......+.++ +.++.++++. .++.+.+|.+.... ...... ..
T Consensus 445 ------------------------~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~----------~~~~~~-~~ 489 (611)
T 1nr0_A 445 ------------------------VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS----------VSEVKT-IV 489 (611)
T ss_dssp ------------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE----------EEEEEE-EE
T ss_pred ------------------------eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc----------eeeeec-cC
Confidence 0001112222 3334455554 57889999987542 000011 23
Q ss_pred CCcceeEEecCc--ceEEEEEecCcEEEEEeCC-ceeeee--ec-CCCCeeEEeeCCCccEEEEEEeCCCeEEEecCCCc
Q psy12365 449 EKYTIMTQAMSE--EFLFFATSEYELKIFSLSE-WKFVSG--YK-HSDKIKSIYPDIYGICLVLIEMNNTGFLYHTAMDY 522 (1324)
Q Consensus 449 ~~~~i~~i~~~~--~~li~~~~~g~i~~~~l~~-~~~~~~--~~-~~~~i~~i~~~~~~~~l~~~~~~~~l~~~~~~~~~ 522 (1324)
+...|.++++++ .+|+.++.+++|++|++.+ ++.... +. |...|.+++++|+|.+|+..+.++.+++|++..+.
T Consensus 490 h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 445688887764 5899999999999999987 555443 34 88999999999999999999999999999998754
Q ss_pred -ee--ccCCC-CCCcceEEEecCCCCCcEEEEEeCCeEEEEE
Q psy12365 523 -LL--PIPEF-PPATEEVLWDTVPVDRNVFVCCSKTSVVTYL 560 (1324)
Q Consensus 523 -~~--~~~~~-~~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~ 560 (1324)
.. ....+ ...+..+.|. ++..++.+..++.+.+|.
T Consensus 570 ~~~~~~~~~h~~~~v~~v~fs---~d~~l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 570 DHPIIIKGAHAMSSVNSVIWL---NETTIVSAGQDSNIKFWN 608 (611)
T ss_dssp SCCEEETTSSTTSCEEEEEEE---ETTEEEEEETTSCEEEEE
T ss_pred cccchhhccCcccCeeEEEEc---CCCEEEEecCCCCEEEEe
Confidence 22 22233 3567788887 444577788888999997
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=2.4e-27 Score=297.62 Aligned_cols=490 Identities=11% Similarity=0.106 Sum_probs=312.6
Q ss_pred cceecccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-C----cEEEEEe-CCCC-EEEEEEcC--CCCEEEEEE
Q psy12365 3 KLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-G----KLIDKIT-LPGL-CIVMDWDS--EGDLLGIIS 73 (1324)
Q Consensus 3 ~~~~~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~----~~~~~~~-~~~~-i~~i~~~~--d~~~l~~~~ 73 (1324)
+.|...+..|.+.|.+++|+| +|++|++++ ++.|.+|+.. + +....+. |.+. |.+++|+| |+++|++++
T Consensus 8 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~ 85 (615)
T 1pgu_A 8 EIIPPQPSTQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 85 (615)
T ss_dssp EEECCCCCCCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred hccCCCCCCccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec
Confidence 355556678999999999999 999999988 7899999984 5 5777777 8888 99999999 999999999
Q ss_pred cCCCeEEEEEcCCC--------eEEEEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCeEEEEe-cCCcE
Q psy12365 74 SNSSAVNVWNTYTK--------KRTIVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKLIDKIT-LPGLC 135 (1324)
Q Consensus 74 ~~d~~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~~~~~~-~~~~i 135 (1324)
. ||.|++||+.++ .....+.+|...|.+++|+|+++.|++ .|.+|| .++....+. |.+.|
T Consensus 86 ~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 86 E-SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRI 163 (615)
T ss_dssp T-TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCE
T ss_pred C-CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccE
Confidence 8 999999999644 566677789999999999999999987 577777 345444444 78899
Q ss_pred EEEEEcCCCC-EEEEEEcCCCcEEEeecccC----------C---CeeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcee
Q psy12365 136 IVMDWDSEGD-LLGIISSNSSAVNVWTLLTY----------T---LGERISWSDD-GQLLAVTTSGGSVKIYLSKLPKLV 200 (1324)
Q Consensus 136 ~~~~~~~~g~-~l~~~~~~~~~i~iwd~~~~----------~---~i~~~~~s~~-~~~l~~~~~dg~i~~~~~~~~~~~ 200 (1324)
.+++|+|++. .+++ ++.|+.|++||..+. . .|+++.|+|+ +++|++++.||.|++|++......
T Consensus 164 ~~~~~~~~~~~~l~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 164 NACHLKQSRPMRSMT-VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EEEEECSSSSCEEEE-EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEEECCCCCcEEEE-EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence 9999999998 7888 999999999998732 4 7999999999 999999999999999998765432
Q ss_pred eec-CCeEEeecCcceEEEEeeccccCCCCcccceeccccCCccccccceEEeecCceeec-ccccceeeeeeeecccCC
Q psy12365 201 VAN-NGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAIL-SSLNQVSVYLRSIERKGT 278 (1324)
Q Consensus 201 ~~~-~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 278 (1324)
... ............+.. . ++...+. +....+.+|...... .
T Consensus 243 ~~~~~~~~~~~~~v~~~~~---------------------------------~-~~~~l~~~~~d~~i~~wd~~~~~--~ 286 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSW---------------------------------L-DSQKFATVGADATIRVWDVTTSK--C 286 (615)
T ss_dssp EECCBTTBCCCSCEEEEEE---------------------------------S-SSSEEEEEETTSEEEEEETTTTE--E
T ss_pred EEecccccccCCceEEEEE---------------------------------c-CCCEEEEEcCCCcEEEEECCCCc--E
Confidence 222 000000000011111 0 1111111 111223333221110 0
Q ss_pred CCcceeeecc-----cCc--ceeeecCceeEeeecCeEEEEEccCCCCCCcccccccccccccccccchhhhhhhccccc
Q psy12365 279 PWTNFIIETE-----IEP--SFLNMGPCHVAVGMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYS 351 (1324)
Q Consensus 279 ~~~~~~i~~~-----~~~--~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 351 (1324)
. ..+... ... .....+...++.+.++.+.+|++..... ......|.+.|.++.+ ++..
T Consensus 287 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-----------~~~~~~~~~~v~~~~~-~~l~ 351 (615)
T 1pgu_A 287 V---QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-----------LKTISGHNKGITALTV-NPLI 351 (615)
T ss_dssp E---EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE-----------EEEECCCSSCEEEEET-TTTE
T ss_pred E---EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE-----------EEEEeCCCCCEEEEEe-cCcE
Confidence 0 111111 000 0111233344455578899998775331 1223345555555555 3310
Q ss_pred cccccccchhcccC-----------------CCcccc--chhhhcccccccccc-------------------------c
Q psy12365 352 SALVNSRIQLHYLG-----------------DNQKTI--PDAFIKNRNYFAHTL-------------------------V 387 (1324)
Q Consensus 352 ~~~~~~~~~~~~~~-----------------~~~~~i--~~~~~~~~~~~~~~~-------------------------~ 387 (1324)
.....+.+.++... ++.+.. .+..+.+++...... +
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 00011111111100 000000 001111111100000 0
Q ss_pred c---cCCCCCCcccccccceeecccceeeeee--CCeEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecC--c
Q psy12365 388 Y---KPQLLGDKEYLGTITSLLLNANYSSALV--NSRIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMS--E 460 (1324)
Q Consensus 388 ~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~ 460 (1324)
. .+..+........+..+..+..++++.. ++.+.+|.+.... ... .....+...|++++++ +
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~----------~~~-~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----------VSF-DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE----------EEE-ECSSCCSSCEEEEEECTTS
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc----------ccc-cccCCccCceEEEEECCCC
Confidence 0 0111111122334444555555555554 6888888877532 100 1122345678888875 5
Q ss_pred ceEEEEEecCcEEEEEeCCceeeeeec--CCCCeeEEeeCC----------CccEEEEEEeCCCeEEEecCCC-cee-cc
Q psy12365 461 EFLFFATSEYELKIFSLSEWKFVSGYK--HSDKIKSIYPDI----------YGICLVLIEMNNTGFLYHTAMD-YLL-PI 526 (1324)
Q Consensus 461 ~~li~~~~~g~i~~~~l~~~~~~~~~~--~~~~i~~i~~~~----------~~~~l~~~~~~~~l~~~~~~~~-~~~-~~ 526 (1324)
+++++++.+|.|++|++.+++.+..+. |...|..+.++| ++.+|++.+.+|.+++|++.++ +.+ .+
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 689999999999999999998887776 889999999999 9999999999999999999886 443 34
Q ss_pred CCCCCCcceEEEecCCCCCcEEEEEeCCeEEEEEEc
Q psy12365 527 PEFPPATEEVLWDTVPVDRNVFVCCSKTSVVTYLFM 562 (1324)
Q Consensus 527 ~~~~~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~~~ 562 (1324)
..+...+..+.|.. ++. ++.+..++.+.+|.+.
T Consensus 581 ~~h~~~v~~l~~s~--~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 581 NAHKDGVNNLLWET--PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TSSTTCEEEEEEEE--TTE-EEEEETTSCEEEEEEC
T ss_pred hcCccceEEEEEcC--CCC-eEEecCCceEEEEeee
Confidence 44566788899986 666 8888888899999854
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4e-26 Score=283.69 Aligned_cols=488 Identities=14% Similarity=0.113 Sum_probs=300.4
Q ss_pred ceecccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 4 LIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 4 ~~~~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
+|...+..+.+.+.+++|+| ||++|++++ ++.|++|+. +++....+. |.+.|++++|+|||++|++++. |++|+|
T Consensus 9 ~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~-d~~v~l 85 (611)
T 1nr0_A 9 LFPSLPRTARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV-HGNVRI 85 (611)
T ss_dssp EECCCCCCCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEE
T ss_pred EECCCCCcccCceeEEeeCC-CCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC-CCCEEE
Confidence 34445556778899999999 999999987 569999998 567777777 8899999999999999999998 999999
Q ss_pred EEcCCC--eEEEEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCC-EEE
Q psy12365 82 WNTYTK--KRTIVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGD-LLG 148 (1324)
Q Consensus 82 w~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~-~l~ 148 (1324)
||+.++ .....+.+|.+.|.+++|+|+|+.|++ .|++||. |+....+. |.+.|.+++|+|++. .++
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred eECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEE
Confidence 998643 345567789999999999999999987 4777874 33333333 778999999999987 588
Q ss_pred EEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeecCC-eEEeecCcceEE
Q psy12365 149 IISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNG-KIAILSSLNQVS 217 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 217 (1324)
+ ++.|++|++||..+. ..|++++|+|||++|++++.||.|++|+............ ..........|.
T Consensus 165 s-~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 165 S-GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp E-EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred E-EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 8 999999999997621 6799999999999999999999999999765433211100 000000000000
Q ss_pred EEeeccccCCCCcccceeccccCCccccccceEEeecCceee-cccccceeeeeeeecccCCCCcceeeecc----cCc-
Q psy12365 218 VYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAI-LSSLNQVSVYLRSIERKGTPWTNFIIETE----IEP- 291 (1324)
Q Consensus 218 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~i~~~----~~~- 291 (1324)
- ..++| +++.++ .+....+.+|...... .. ..+... ...
T Consensus 244 ~------------------v~~sp------------dg~~l~s~s~D~~v~lWd~~~~~--~~---~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 244 G------------------LTWSP------------DGTKIASASADKTIKIWNVATLK--VE---KTIPVGTRIEDQQL 288 (611)
T ss_dssp E------------------EEECT------------TSSEEEEEETTSEEEEEETTTTE--EE---EEEECCSSGGGCEE
T ss_pred E------------------EEECC------------CCCEEEEEeCCCeEEEEeCCCCc--ee---eeecCCCCccceeE
Confidence 0 00001 111111 1122234444322111 00 111110 000
Q ss_pred ceeeecCceeEeeecCeEEEEEccCCCCCCcccccccccccccccccchhhhhhhccccccccccccchhcccCCCcccc
Q psy12365 292 SFLNMGPCHVAVGMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTI 371 (1324)
Q Consensus 292 ~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 371 (1324)
.....+...++.+.++.+.+|+..... .......|.+.|.++.++++.....+.+ .|+.+.+
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~-----------~~~~~~gh~~~v~~l~~spdg~~l~s~s-------~D~~v~~ 350 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGS-----------IDQVRYGHNKAITALSSSADGKTLFSAD-------AEGHINS 350 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTE-----------EEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCC-----------cceEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCcEEE
Confidence 111123445566668889999876432 1223456788899999888654432222 2333333
Q ss_pred chhhhcccccccccccccCCCCCCcccccccceeeccc--ceeeeeeCCeEEEEEecCCCCCCCcc---c----------
Q psy12365 372 PDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLNA--NYSSALVNSRIQLHYLGDNQKTIPDA---F---------- 436 (1324)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~~~---~---------- 436 (1324)
++...... . . .....+...+.++..+. ..+.+..++.+.++.+.......... .
T Consensus 351 Wd~~~~~~-----~--~----~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 351 WDISTGIS-----N--R----VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EETTTCCE-----E--E----CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EECCCCce-----e--e----ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 32210000 0 0 00001112233332221 12222345555555443321000000 0
Q ss_pred -cc---------ccccccc-----CCCCCcceeEEecC--cceEEEEEecCcEEEEEeCCcee--eeeecCCCCeeEEee
Q psy12365 437 -VD---------KESKLFP-----ESGEKYTIMTQAMS--EEFLFFATSEYELKIFSLSEWKF--VSGYKHSDKIKSIYP 497 (1324)
Q Consensus 437 -~~---------~~~~~~~-----~~~~~~~i~~i~~~--~~~li~~~~~g~i~~~~l~~~~~--~~~~~~~~~i~~i~~ 497 (1324)
.+ ....++. ...+...+.+++++ +.++++|+.+|+|++|++.+... +....|...|..+.+
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~f 499 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 499 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEE
Confidence 00 0000000 00122346676665 56899999999999999987643 234568899999999
Q ss_pred CCCccEEEEEEeCCCeEEEecCC-Cceecc--CC-CCCCcceEEEecCCCCCcEEEEEeCCeEEEEEEc
Q psy12365 498 DIYGICLVLIEMNNTGFLYHTAM-DYLLPI--PE-FPPATEEVLWDTVPVDRNVFVCCSKTSVVTYLFM 562 (1324)
Q Consensus 498 ~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~--~~-~~~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~~~ 562 (1324)
+|+|.+|+..+.++.+.+|++.+ ++.... .. +...+..+.|+. ++..++.+..++.+.+|.+.
T Consensus 500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp--dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP--DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC--CCCEEEEEECCCcEEEEECC
Confidence 99999999999999999999987 544332 12 445667788874 55556666678889999854
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=2.7e-26 Score=312.58 Aligned_cols=494 Identities=14% Similarity=0.168 Sum_probs=308.7
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|.+.|.+++|+| +|++|++++.||+|++||. +++.+..+. |.+.|.+++|+|||+++++++. |+.|++||+.+
T Consensus 611 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~ 688 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DKKVKIWDSAT 688 (1249)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTT
T ss_pred EecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCeEEEEECCC
Confidence 357999999999999 9999999999999999997 678888888 8899999999999999999998 99999999999
Q ss_pred CeEEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
++....+.+|...|.++.|+|+ +..+++ .|++||.. ++....+. |.+.|.+++|+|+|+++++ ++.||.|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s-~s~dg~v 767 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS-CSADGTL 767 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE-EESSSEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE-EECCCeE
Confidence 9998888999999999999995 446666 89999976 55555554 7889999999999999999 9999999
Q ss_pred EEeecccC-----------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--------------
Q psy12365 158 NVWTLLTY-----------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPKLV-------------- 200 (1324)
Q Consensus 158 ~iwd~~~~-----------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~~-------------- 200 (1324)
++||+.+. ..+.+++|+|+|+.+++++ +|.+.+|+.......
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 99998622 1455666777777666665 456666765432110
Q ss_pred --eecCCeEEeecCcceEEEEeeccccCCCCcccceeccccCCccccccceEEeecCceee-cccccceeeeeeeecccC
Q psy12365 201 --VANNGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAI-LSSLNQVSVYLRSIERKG 277 (1324)
Q Consensus 201 --~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~ 277 (1324)
...+..++..+.-..+.++ +... +.+.. .+..-...+.......+|...+ .+....+.+|........
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vw-d~~~--~~~~~------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELW-NIDS--RLKVA------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEE-ETTT--TEEEE------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred EEcCCCCEEEEEeCCCeEEEE-EcCC--Cceee------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 0111112222222222221 1000 00000 0000000000000001111111 111122333321110000
Q ss_pred C---------------------------C------CcceeeecccCcceeeec--CceeEeee-cCeEEEEEccCCCCCC
Q psy12365 278 T---------------------------P------WTNFIIETEIEPSFLNMG--PCHVAVGM-NNRVWVYGLNPSVNNK 321 (1324)
Q Consensus 278 ~---------------------------~------~~~~~i~~~~~~~~~~~~--~~~~a~~~-~~~i~~~~~~~~~~~~ 321 (1324)
. . ........+.....+++. ...++++. ++.+.+|+..+...
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-- 995 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-- 995 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC--
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce--
Confidence 0 0 000000001111122222 23455544 67899999876542
Q ss_pred cccccccccccccccccchhhhhhhccccccccccccchhcccCCCccccchhhhcccccccccccccCCCCCCcccccc
Q psy12365 322 SHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTIPDAFIKNRNYFAHTLVYKPQLLGDKEYLGT 401 (1324)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1324)
......|.+.|.++.++++.....+.+ .|..+.+++... .. ..........
T Consensus 996 ---------~~~~~~h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd~~~-------~~------~~~~~~~~~~ 1046 (1249)
T 3sfz_A 996 ---------FSSGVGHKKAVRHIQFTADGKTLISSS-------EDSVIQVWNWQT-------GD------YVFLQAHQET 1046 (1249)
T ss_dssp ---------EEECCCCSSCCCCEEECSSSSCEEEEC-------SSSBEEEEETTT-------TE------EECCBCCSSC
T ss_pred ---------eeecccCCCceEEEEECCCCCEEEEEc-------CCCEEEEEECCC-------Cc------eEEEecCCCc
Confidence 233456778888888887654332221 223333332210 00 0111122334
Q ss_pred cceeeccc--ceeeeeeCCeEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecCc--ceEEEEEecCcEEEEEe
Q psy12365 402 ITSLLLNA--NYSSALVNSRIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMSE--EFLFFATSEYELKIFSL 477 (1324)
Q Consensus 402 i~~~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~li~~~~~g~i~~~~l 477 (1324)
+.++..+. ..++...++.+.+|++..+. ....+. .+...|+++++++ ..+++++.+|+|++|++
T Consensus 1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----------~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~ 1114 (1249)
T 3sfz_A 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGR----------IERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114 (1249)
T ss_dssp EEEEEECSSSEEEEEESSSEEEEEETTTTC----------CCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECS
T ss_pred EEEEEEcCCCcEEEEECCCcEEEEECCCCc----------eeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 44444433 34445578999999987654 112222 2345567666654 58999999999999999
Q ss_pred CCceeeeeec-CCCCeeEEeeCCCccEEEEEEeCCCeEEEecCCCceecc----------CCCCCCcceEEEecCCCCCc
Q psy12365 478 SEWKFVSGYK-HSDKIKSIYPDIYGICLVLIEMNNTGFLYHTAMDYLLPI----------PEFPPATEEVLWDTVPVDRN 546 (1324)
Q Consensus 478 ~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~w~~~~~~~~ 546 (1324)
.++..+..+. |...|.++.++|+|..|++.+.+|.+++|++.+++.... ..+...+..+.|+ +++.
T Consensus 1115 ~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs---~dg~ 1191 (1249)
T 3sfz_A 1115 DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS---PDSK 1191 (1249)
T ss_dssp SSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC---TTSS
T ss_pred CCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEEC---CCCC
Confidence 9888777665 788999999999999999999999999999988776432 1234557788887 4555
Q ss_pred EEEEEeCCeEEEEEEc
Q psy12365 547 VFVCCSKTSVVTYLFM 562 (1324)
Q Consensus 547 l~v~~~~~~i~v~~~~ 562 (1324)
.+++.. +.+.+|.+.
T Consensus 1192 ~l~s~~-g~v~vwd~~ 1206 (1249)
T 3sfz_A 1192 TLVSAG-GYLKWWNVA 1206 (1249)
T ss_dssp CEEEES-SSEEEBCSS
T ss_pred EEEECC-CeEEEEECC
Confidence 555544 789999853
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.1e-25 Score=306.57 Aligned_cols=454 Identities=12% Similarity=0.098 Sum_probs=283.1
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcC--CCCEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDS--EGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~--d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|.+.|.+++|+| +|++|++++.||.|++||. +|+.+..+. |.+.|.+++|+| ++..+++++. |+.|++||+.
T Consensus 654 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-d~~v~vwd~~ 731 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN-DFFLKLWDLN 731 (1249)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET-TSCEEEEETT
T ss_pred ccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC-CCeEEEEECC
Confidence 57999999999999 9999999999999999998 678888887 889999999999 4557888887 9999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEE------------------------------
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKI------------------------------ 129 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~------------------------------ 129 (1324)
++.....+.+|.+.|++++|+|+++.+++ .|++||.. ++....+
T Consensus 732 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1249)
T 3sfz_A 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 811 (1249)
T ss_dssp SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS
T ss_pred CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC
Confidence 99988888999999999999999999988 89999965 3222211
Q ss_pred --------------------------ecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEE
Q psy12365 130 --------------------------TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISW 173 (1324)
Q Consensus 130 --------------------------~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~ 173 (1324)
.+.+.+.+++|+|+|..+++ ++.++.|++||..+. ..|+++.|
T Consensus 812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI-ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE-ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 14567889999999999999 999999999998732 67999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCce------ee----e-cCC--eEEeecCcceEEEEeecc-ccCCCCcccceecccc
Q psy12365 174 SDDGQLLAVTTSGGSVKIYLSKLPKL------VV----A-NNG--KIAILSSLNQVSVYLRSI-ERKGTPWTNFIIETEI 239 (1324)
Q Consensus 174 s~~~~~l~~~~~dg~i~~~~~~~~~~------~~----~-~~~--~~~~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~~~ 239 (1324)
+|+|+++++++.||.+++|+...... .. . ... .+........+.+..... .....+. .......+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 969 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE-AQVSCCCL 969 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC-SCEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc-CcEEEEEE
Confidence 99999999999999999999542100 00 0 000 000000000000000000 0000000 00000000
Q ss_pred CCccc------------------------------cccceEEeecCceeec-ccccceeeeeeeecccCCCCcceeeecc
Q psy12365 240 EPSWR------------------------------EYHGLVVANNGKIAIL-SSLNQVSVYLRSIERKGTPWTNFIIETE 288 (1324)
Q Consensus 240 ~~~~~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~ 288 (1324)
+|... .+.......+|+..+. +....+.+|......... .....
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~ 1044 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-----LQAHQ 1044 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-----CBCCS
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-----EecCC
Confidence 11000 0000011112222111 112223333221111000 00000
Q ss_pred cCcceeee--cCceeEeeecCeEEEEEccCCCCCCcccccccccccccccccchhhhhhhccccccccccccchhcccCC
Q psy12365 289 IEPSFLNM--GPCHVAVGMNNRVWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGD 366 (1324)
Q Consensus 289 ~~~~~~~~--~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1324)
.....+.+ +...++.+.++.+.+|++.+... ...+..|.
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~---------------------------- 1085 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-----------ERDFTCHQ---------------------------- 1085 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----------CEEEECCS----------------------------
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----------eEEEcccC----------------------------
Confidence 00001111 12233344455566666554331 00011111
Q ss_pred CccccchhhhcccccccccccccCCCCCCcccccccceeecc--cceeee-eeCCeEEEEEecCCCCCCCcccccccccc
Q psy12365 367 NQKTIPDAFIKNRNYFAHTLVYKPQLLGDKEYLGTITSLLLN--ANYSSA-LVNSRIQLHYLGDNQKTIPDAFVDKESKL 443 (1324)
Q Consensus 367 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 443 (1324)
+.+.++..+ +.+.++ ..++.+.+|++.... ....
T Consensus 1086 ---------------------------------~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~----------~~~~ 1122 (1249)
T 3sfz_A 1086 ---------------------------------GTVLSCAISSDATKFSSTSADKTAKIWSFDLLS----------PLHE 1122 (1249)
T ss_dssp ---------------------------------SCCCCEEECSSSSSCEEECCSSCCCEECSSSSS----------CSBC
T ss_pred ---------------------------------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc----------eeee
Confidence 122222222 223333 356778888776543 1111
Q ss_pred ccCCCCCcceeEEecCc--ceEEEEEecCcEEEEEeCCceeeeee----------cCCCCeeEEeeCCCccEEEEEEeCC
Q psy12365 444 FPESGEKYTIMTQAMSE--EFLFFATSEYELKIFSLSEWKFVSGY----------KHSDKIKSIYPDIYGICLVLIEMNN 511 (1324)
Q Consensus 444 ~~~~~~~~~i~~i~~~~--~~li~~~~~g~i~~~~l~~~~~~~~~----------~~~~~i~~i~~~~~~~~l~~~~~~~ 511 (1324)
...+...|+++++++ ..+++++.+|.|++|++.++..+..+ .|...|..+.++|+|.+|++.+ |
T Consensus 1123 --l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g 1198 (1249)
T 3sfz_A 1123 --LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198 (1249)
T ss_dssp --CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--S
T ss_pred --eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--C
Confidence 224456788888765 48999999999999999988766554 3778899999999999998775 8
Q ss_pred CeEEEecCCCceecc-CCCCCCcceEEEecCCCCCcEEEEEeCCeEEEEE
Q psy12365 512 TGFLYHTAMDYLLPI-PEFPPATEEVLWDTVPVDRNVFVCCSKTSVVTYL 560 (1324)
Q Consensus 512 ~l~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~ 560 (1324)
.+.+|++.+++.... ..+...+..+.|+. ++..++++..++.+++|.
T Consensus 1199 ~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1199 YLKWWNVATGDSSQTFYTNGTNLKKIHVSP--DFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp SEEEBCSSSCBCCCCCCCSSCCCCCCEECS--SSCCEEEECTTCCEEEEC
T ss_pred eEEEEECCCCceeeeeeccCCcccEEEECC--CCCEEEEecCCcEEEEEe
Confidence 999999988876433 33345667788885 667777777888999997
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.5e-24 Score=245.34 Aligned_cols=187 Identities=17% Similarity=0.223 Sum_probs=161.2
Q ss_pred cccCCCCCCeeEEEEecCC----CCEEEEEeCCCcEEEEECCCc-E--EEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCe
Q psy12365 7 TLEEPHGPGDVYVCWQRRT----GELLATTGRDSSVSIYNKHGK-L--IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSA 78 (1324)
Q Consensus 7 ~~~~~h~~~i~~~~~sp~~----g~~l~~~~~~~~v~v~~~~~~-~--~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~ 78 (1324)
....+|.+.|.+++|+| + +.+|++++.|++|++|+.... . ...+. |...|.+++|+|++..+++++. |+.
T Consensus 26 ~~~~~H~~~V~~v~~~~-~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-D~~ 103 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGT-NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-DAH 103 (321)
T ss_dssp EETTSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-TSE
T ss_pred eecccCCCcEEEEEEec-CCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-CCc
Confidence 34578999999999997 4 679999999999999997433 2 22344 7889999999999999999998 999
Q ss_pred EEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEE
Q psy12365 79 VNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIIS 151 (1324)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~ 151 (1324)
|++||+.+++....+..+...+.+++|+|+++.|++ .+++||.. ++....+. +...+.+++|+|+|++|++ +
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las-g 182 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS-G 182 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE-E
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE-E
Confidence 999999999888888889889999999999999998 89999976 55555554 5678999999999999999 9
Q ss_pred cCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 152 SNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 152 ~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+.|+.|++||+.+. ..|.+++|+|++++|++++.||.|++|+++.
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999998732 5789999999999999999999999999753
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=1.4e-24 Score=248.50 Aligned_cols=185 Identities=11% Similarity=0.238 Sum_probs=163.9
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|.+.|.+++|+| +|++|++++.||+|++||. +++.+..+. |...|.+++|+|+|+++++++. |+.|++|++.+
T Consensus 51 l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~v~iw~~~~ 128 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-DNICSIYNLKT 128 (340)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-TCEEEEEETTT
T ss_pred ecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-CCeEEEEECcc
Confidence 368999999999999 9999999999999999997 677777777 7889999999999999999998 99999999876
Q ss_pred C----eEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCc
Q psy12365 87 K----KRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSA 156 (1324)
Q Consensus 87 ~----~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~ 156 (1324)
+ .....+.+|.+.+.++.|+|++.++.. .|++||.. ++....+. |.+.|.+++|+|++.++++ ++.|+.
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-g~~d~~ 207 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-GACDAS 207 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EETTSC
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE-EeCCCc
Confidence 5 355567799999999999999875544 89999976 66666665 7889999999999999999 999999
Q ss_pred EEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 157 VNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 157 i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
|++||+++. ..|++++|+|+|.+|++++.||.|++|+++.
T Consensus 208 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 999998732 6799999999999999999999999999754
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=6.4e-25 Score=258.16 Aligned_cols=165 Identities=15% Similarity=0.291 Sum_probs=148.4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|.++|.+++|+| ++++|++++.||+|++||. +++....+. |.+.|.+++|+|+|++|++++. |++|++||+.++
T Consensus 105 ~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-D~~i~iwd~~~~ 182 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-DMTIKLWDFQGF 182 (410)
T ss_dssp ECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-TSCCCEEETTSS
T ss_pred cccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC
Confidence 47999999999999 9999999999999999997 677777787 8899999999999999999998 999999999998
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEe
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 160 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iw 160 (1324)
+....+.+|...|.+++|+|++..|++ +|++||.. |.....+. |...|.++.|+|+|.++++ ++.|+.|++|
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s-~s~D~~v~vw 261 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVW 261 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE-EcCCCeEEEE
Confidence 888888999999999999999999988 99999976 66666665 7788999999999999999 9999999999
Q ss_pred ecccC----------CCeeEEEEcCCC
Q psy12365 161 TLLTY----------TLGERISWSDDG 177 (1324)
Q Consensus 161 d~~~~----------~~i~~~~~s~~~ 177 (1324)
|+.+. ..|.++.|+|++
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPES 288 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcc
Confidence 98732 567778888764
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=2.4e-24 Score=267.70 Aligned_cols=374 Identities=15% Similarity=0.239 Sum_probs=260.3
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
..|...|.++.|+| +|++|++++.|+.|++||.+++.+..+. |.+.|.+++|+|||..|++++. |+.|++||..+ +
T Consensus 177 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-d~~i~~w~~~~-~ 253 (577)
T 2ymu_A 177 TGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNG-Q 253 (577)
T ss_dssp ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSCEEEECTTS-C
T ss_pred cCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeC-CCEEEEEeCCC-C
Confidence 46788899999999 9999999999999999999999888888 8899999999999999999998 99999999764 5
Q ss_pred EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 89 RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
....+.+|...|.+++|+|+++.+++ .+++||..++....+. |.+.|.+++|+|++..+++ ++.|+.|++||.
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~d~~i~~w~~ 332 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNR 332 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEET
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeC
Confidence 55677899999999999999999988 8999999988877765 7889999999999999999 999999999998
Q ss_pred ccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeecCCeEEeecCcceEEEEeeccccCCCCcccc
Q psy12365 163 LTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKGTPWTNF 233 (1324)
Q Consensus 163 ~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~ 233 (1324)
... ..+.+++|+|+|++|++++.||.+++|+.....+....+. -.....+.+
T Consensus 333 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~----~~~v~~~~~--------------- 393 (577)
T 2ymu_A 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAF--------------- 393 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECC----SSCEEEEEE---------------
T ss_pred CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCC----CCCeEEEEE---------------
Confidence 722 6789999999999999999999999999654332211110 000111111
Q ss_pred eeccccCCccccccceEEeecCceee-cccccceeeeeeeecccCCCCcceeeecc-cCcceeeecC--ceeEe-eecCe
Q psy12365 234 IIETEIEPSWREYHGLVVANNGKIAI-LSSLNQVSVYLRSIERKGTPWTNFIIETE-IEPSFLNMGP--CHVAV-GMNNR 308 (1324)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~--~~~a~-~~~~~ 308 (1324)
+| +++.++ .+....+.+|... .... ..+... .....+++.| ..++. +.++.
T Consensus 394 ------s~------------dg~~l~~~~~d~~v~~~~~~---~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 394 ------SP------------DGQTIASASDDKTVKLWNRN---GQLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp ------CT------------TSSCEEEEETTSEEEEECTT---CCEE---EEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ------CC------------CCCEEEEEeCCCEEEEEeCC---CCEE---EEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 00 111111 1111123333210 0000 001100 0111123322 34444 44678
Q ss_pred EEEEEccCCCCCCcccccccccccccccccchhhhhhhccccccccccccchhcccCCCccccchhhhcccccccccccc
Q psy12365 309 VWVYGLNPSVNNKSHTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTIPDAFIKNRNYFAHTLVY 388 (1324)
Q Consensus 309 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 388 (1324)
+.+|+...... .....|.+
T Consensus 450 v~~w~~~~~~~------------~~~~~~~~------------------------------------------------- 468 (577)
T 2ymu_A 450 VKLWNRNGQLL------------QTLTGHSS------------------------------------------------- 468 (577)
T ss_dssp EEEEETTSCEE------------EEEECCSS-------------------------------------------------
T ss_pred EEEEECCCCEE------------EEEcCCCC-------------------------------------------------
Confidence 88998543210 01111222
Q ss_pred cCCCCCCcccccccceeec--ccceeeee-eCCeEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecCc--ceE
Q psy12365 389 KPQLLGDKEYLGTITSLLL--NANYSSAL-VNSRIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMSE--EFL 463 (1324)
Q Consensus 389 ~~~~~~~~~~~~~i~~~~~--~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~l 463 (1324)
.+.++.+ ++.+++.. .++.+.+|..... ....+. .+...|+++++++ .+|
T Consensus 469 ------------~v~~~~~spd~~~las~~~d~~i~iw~~~~~-----------~~~~~~--~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 469 ------------SVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-----------LLQTLT--GHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp ------------CEEEEEECTTSCEEEEEETTSEEEEEETTSC-----------EEEEEE--CCSSCEEEEEECTTSSCE
T ss_pred ------------CEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-----------EEEEEe--CCCCCEEEEEEcCCCCEE
Confidence 2222222 23344433 4677888874321 112222 3456688887764 589
Q ss_pred EEEEecCcEEEEEeCCceeeeeec-CCCCeeEEeeCCCccEEEEEEeCCCeEEEe
Q psy12365 464 FFATSEYELKIFSLSEWKFVSGYK-HSDKIKSIYPDIYGICLVLIEMNNTGFLYH 517 (1324)
Q Consensus 464 i~~~~~g~i~~~~l~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~~~~l~~~~ 517 (1324)
+.++.||.|++|+.+ ++.+..+. |..+|..+.++|+|.+|+..+.++.+++||
T Consensus 524 ~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 524 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999975 45555554 899999999999999999999999999996
No 13
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-23 Score=270.88 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=156.2
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCc-EEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGK-LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~-~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
.+|.+.|.+++|+| +|++||+|+.||+|++|+..+. ....+.|...|.+++|+| |++|++++. |++|++||+.+++
T Consensus 14 ~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~-D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINA-KDTVYVLSLYSQK 90 (902)
T ss_dssp EECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEET-TCEEEEEETTTCS
T ss_pred cCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEEC-cCeEEEEECCCCc
Confidence 47899999999999 9999999999999999998554 333444778999999999 889999988 9999999999888
Q ss_pred EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEE-------------ecCCcEEEEEEcCC-CCEEEE
Q psy12365 89 RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKI-------------TLPGLCIVMDWDSE-GDLLGI 149 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~-------------~~~~~i~~~~~~~~-g~~l~~ 149 (1324)
....+. |.+.|++++|+|+++++++ .|++||..+.....+ .|.+.|.+++|+|+ +..+++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 776664 7788999999999999998 899999875443211 16689999999996 467887
Q ss_pred EEcCCCcEEEeecccC----------------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 150 ISSNSSAVNVWTLLTY----------------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~----------------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
++.|+.| +||+++. ..|++++|+|||.+|++++.||.|++|+.+...
T Consensus 170 -g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 170 -SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp -ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred -EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999 9998731 348999999999999999999999999986543
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=4.2e-24 Score=240.10 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=165.6
Q ss_pred CccceecccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCe
Q psy12365 1 MDKLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSA 78 (1324)
Q Consensus 1 ~~~~~~~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~ 78 (1324)
|+........+|.+.|.+++|+| +|++|++++.||+|++||. ++..+..+. |...|.+++|+|++++|++++. |+.
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-d~~ 78 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFR 78 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSE
T ss_pred CcceeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-CCE
Confidence 34444444578999999999999 9999999999999999998 566777777 7889999999999999999998 999
Q ss_pred EEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCe-EEEEe-cCCcEEEEEEcC-CCCEEEE
Q psy12365 79 VNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKL-IDKIT-LPGLCIVMDWDS-EGDLLGI 149 (1324)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~-~~~~~-~~~~i~~~~~~~-~g~~l~~ 149 (1324)
|++||+.+++....+.+|.+.|.+++|+|++++|++ +|++||.. +.. ...+. |.+.|.+++|+| ++..+++
T Consensus 79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 999999999888888999999999999999999988 89999976 323 33333 788999999999 6789999
Q ss_pred EEcCCCcEEEeecccC-----------CCeeEEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q psy12365 150 ISSNSSAVNVWTLLTY-----------TLGERISWSD--DGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~-----------~~i~~~~~s~--~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++.|+.|++||+.+. ..+..+.|+| ++.+|++++.||.|++|+++.
T Consensus 159 -gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 159 -GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp -EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred -EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 999999999998621 4577888876 778999999999999998754
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=1.8e-23 Score=236.62 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=168.1
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|...|.+++|+| +|++|++++.||.|++|+. +++....+. |...|.+++|+|++++|++++. |+.|++||+.+
T Consensus 19 ~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~ 96 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-DKTLKIWDVSS 96 (312)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTT
T ss_pred EcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-CCEEEEEECCC
Confidence 368999999999999 9999999999999999998 677777777 8889999999999999999998 99999999999
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEE
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 159 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~i 159 (1324)
++....+.+|...|.++.|+|+++.|++ .|++||.. ++....+. |.+.|.++.|+|+|.++++ ++.|+.|++
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~ 175 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 175 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE-EeCCCcEEE
Confidence 9888888899999999999999999988 89999986 66666665 6789999999999999999 999999999
Q ss_pred eecccC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 160 WTLLTY-----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 160 wd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
||+.+. ..+..+.|+|++++|++++.||.|++|++..
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 998732 4688899999999999999999999999754
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=2.5e-23 Score=235.56 Aligned_cols=185 Identities=14% Similarity=0.177 Sum_probs=165.0
Q ss_pred cCCCCCCeeEEEEecCCC-CEEEEEeCCCcEEEEECC------CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEE
Q psy12365 9 EEPHGPGDVYVCWQRRTG-ELLATTGRDSSVSIYNKH------GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVN 80 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g-~~l~~~~~~~~v~v~~~~------~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~ 80 (1324)
.++|.+.|.+++|+| ++ ++|++++.|++|++|+.. +.++..+. |...|.+++|+|||.+|++++. |++|+
T Consensus 13 l~gH~~~V~~l~~~~-~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW-DKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECS-SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred EccccceEEEEEccC-CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC-CCEEE
Confidence 368999999999999 65 899999999999999973 23455666 8899999999999999999998 99999
Q ss_pred EEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcCC------CCEEE
Q psy12365 81 VWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSE------GDLLG 148 (1324)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~------g~~l~ 148 (1324)
+||+.+++....+.+|...|.+++|+|++..|++ +|++||.++.....+. |.+.|.++.|+|. +..++
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 9999999988888999999999999999999988 8999999987766655 7789999999995 44888
Q ss_pred EEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 149 IISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+ ++.|+.|++||+++. ..|.+++|+|+|++|++++.||.|++|++..
T Consensus 171 s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 171 S-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp E-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred E-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 8 999999999998732 6799999999999999999999999999754
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=1.7e-23 Score=240.53 Aligned_cols=184 Identities=10% Similarity=0.191 Sum_probs=161.2
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|...|.+++|+| ++++|++++.||+|++||. +++....+. +...|.+++|+|+|..+++++. |+.+++|++...
T Consensus 61 ~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-d~~i~v~~~~~~ 138 (354)
T 2pbi_B 61 KGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-DNKCSVYPLTFD 138 (354)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-TSEEEEEECCCC
T ss_pred cCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-CCCEEEEEEecc
Confidence 58999999999999 9999999999999999996 666777776 6788999999999999999988 999999998543
Q ss_pred ------eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcC--CCCEEEEEEc
Q psy12365 88 ------KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDS--EGDLLGIISS 152 (1324)
Q Consensus 88 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~--~g~~l~~~~~ 152 (1324)
.....+.+|.+.|.++.|+|++..|++ +|++||.. ++....+. |...|.++.|+| +|+.+++ ++
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s-gs 217 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS-GG 217 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE-EE
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE-Ee
Confidence 223445679999999999999998888 99999976 77777665 788999999987 5789999 99
Q ss_pred CCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 153 NSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 153 ~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.|+.|++||+++. ..|++++|+|++.+|++++.||.|++|+++.
T Consensus 218 ~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 9999999998732 6799999999999999999999999999754
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.93 E-value=4.3e-23 Score=236.51 Aligned_cols=182 Identities=18% Similarity=0.331 Sum_probs=157.0
Q ss_pred CCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEECCCcE-E--EEE-e-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 10 EPHGP-GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKL-I--DKI-T-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 10 ~~h~~-~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~-~--~~~-~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
.+|.. .|.+++|+| +|++|++++.|++|+|||..+.. . ..+ . |.+.|.+++|+|+|++|++++. |+.|++|+
T Consensus 12 ~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-D~~v~iw~ 89 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-DATTCIWK 89 (345)
T ss_dssp CCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-TSCEEEEE
T ss_pred cCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-CCcEEEEE
Confidence 57887 899999999 99999999999999999985432 2 222 2 7789999999999999999998 99999999
Q ss_pred cCCC--eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC-Ce---EEEEe-cCCcEEEEEEcCCCCEEEEEE
Q psy12365 84 TYTK--KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG-KL---IDKIT-LPGLCIVMDWDSEGDLLGIIS 151 (1324)
Q Consensus 84 ~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g-~~---~~~~~-~~~~i~~~~~~~~g~~l~~~~ 151 (1324)
..++ +....+.+|.+.|.+++|+|++++|++ .|++||... .. ...+. |...|.+++|+|+|.+|++ +
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~ 168 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS-A 168 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE-E
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE-E
Confidence 8776 345677899999999999999999998 899999763 22 22222 7788999999999999999 9
Q ss_pred cCCCcEEEeecccC------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 152 SNSSAVNVWTLLTY------------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 152 ~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
+.|+.|++||.... ..|++++|+|+|++|++++.||.|++|+.
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999997621 67999999999999999999999999985
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.93 E-value=4.2e-23 Score=241.44 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=160.1
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CC------------------CCEEEEEEcCCCCEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LP------------------GLCIVMDWDSEGDLLG 70 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~------------------~~i~~i~~~~d~~~l~ 70 (1324)
+|.+.|.+++|+| ||++|++++ ++.+++|+. +|+.+..+. +. ..|.+++|+|||++|+
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 5999999999999 999999876 688999997 666666654 21 1389999999999999
Q ss_pred EEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcC-C
Q psy12365 71 IISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDS-E 143 (1324)
Q Consensus 71 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~-~ 143 (1324)
+++. |+.|++||+.+++....+.+|...|.+++|+|++..|++ +|++||.. ++....+.+...+.+++|+| +
T Consensus 140 s~~~-d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 140 TGAE-DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EEcC-CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9998 999999999999988889999999999999999999988 99999986 66667777888999999999 8
Q ss_pred CCEEEEEEcCCCcEEEeecccC-----------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 144 GDLLGIISSNSSAVNVWTLLTY-----------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 144 g~~l~~~~~~~~~i~iwd~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
|.++++ ++.|+.|++||..+. ..|.+++|+|+|++|++++.||.|++|++..
T Consensus 219 ~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 219 GKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCEEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999999 999999999997621 4689999999999999999999999999753
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.92 E-value=5e-23 Score=236.00 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=161.5
Q ss_pred CCCCCCeeEEEE-----ecCCCCEEEEEeCCCcEEEEECC--------CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcC
Q psy12365 10 EPHGPGDVYVCW-----QRRTGELLATTGRDSSVSIYNKH--------GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSN 75 (1324)
Q Consensus 10 ~~h~~~i~~~~~-----sp~~g~~l~~~~~~~~v~v~~~~--------~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~ 75 (1324)
.+|.+.|.+++| +|.++++|++++.|++|++||.. +.+...+. |...|.+++|+|++.++++++.
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~- 96 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW- 96 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET-
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC-
Confidence 689999999999 54489999999999999999973 23445555 8889999999999999999998
Q ss_pred CCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe----cCCcEEEEEEcCCC--
Q psy12365 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT----LPGLCIVMDWDSEG-- 144 (1324)
Q Consensus 76 d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~----~~~~i~~~~~~~~g-- 144 (1324)
|++|++||+.+++....+.+|.+.|.+++|+|+++.|++ .|++||..+....... |...|.++.|+|++
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccc
Confidence 999999999999888888899999999999999999988 8999998866544432 66789999999987
Q ss_pred --------CEEEEEEcCCCcEEEeeccc---------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 145 --------DLLGIISSNSSAVNVWTLLT---------YTLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 145 --------~~l~~~~~~~~~i~iwd~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.++++ ++.|+.|++||... ...|.+++|+|+|++|++++.||.|++|++.
T Consensus 177 ~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 177 ANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp CSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred ccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 68998 99999999999651 1679999999999999999999999999973
No 21
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.92 E-value=1.2e-22 Score=254.79 Aligned_cols=182 Identities=10% Similarity=0.173 Sum_probs=160.9
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCC-EEEEEEcCCCeEEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRD----SSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGD-LLGIISSNSSAVNVWN 83 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~----~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~-~l~~~~~~d~~i~iw~ 83 (1324)
..|...|.+++|+| +|++|++++.+ +.|.+|| .++....+. |.+.|.+++|+|+++ .+++++. |+.|++||
T Consensus 113 ~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~vwd 189 (615)
T 1pgu_A 113 QVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-DGSVVFYQ 189 (615)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-TTEEEEEE
T ss_pred hcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeC-CCcEEEEe
Confidence 46889999999999 99999999987 7899999 566666666 888999999999998 7888887 99999999
Q ss_pred cCCCeEEEEecCCCC---CceEEEEecC-CCEEEE-----EEEEEeCC-CCeEEEE-----ecCCcEEEEEEcCCCCEEE
Q psy12365 84 TYTKKRTIVDSGLRD---PLTCLVWCKQ-CSMLQL-----SVSIYNKH-GKLIDKI-----TLPGLCIVMDWDSEGDLLG 148 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~-----~i~v~d~~-g~~~~~~-----~~~~~i~~~~~~~~g~~l~ 148 (1324)
..+++....+.+|.. .|.+++|+|+ +++|++ .|++||.. ++....+ .|.+.|.++.|+ ++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 190 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred CCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 999998888889999 9999999999 999887 89999975 7788887 688999999999 999999
Q ss_pred EEEcCCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 149 IISSNSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+ ++.|+.|++||+.+. ..+..+.|+ ++.++++++.+|.+++|+....
T Consensus 269 ~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 269 T-VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp E-EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred E-EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 9 999999999998732 346677775 8899999999999999997653
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.92 E-value=3e-23 Score=238.57 Aligned_cols=184 Identities=16% Similarity=0.219 Sum_probs=143.4
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeC------CCcEEEEEC-CCc-----EEEEEeCCCCEEEEEEcCCCCEEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGR------DSSVSIYNK-HGK-----LIDKITLPGLCIVMDWDSEGDLLGIISSNS 76 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~------~~~v~v~~~-~~~-----~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d 76 (1324)
+..|...|.+++||| ||++|++++. |+.|++|+. ++. ......|...|.+++|+|++.++ +++. |
T Consensus 38 p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~-d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASD-S 114 (357)
T ss_dssp --CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEET-T
T ss_pred cccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEEC-C
Confidence 346999999999999 9999999997 678999986 332 22334488899999999998654 5666 9
Q ss_pred CeEEEEEcCCCeEE----EEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCC
Q psy12365 77 SAVNVWNTYTKKRT----IVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGD 145 (1324)
Q Consensus 77 ~~i~iw~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~ 145 (1324)
|+|+|||+.+++.. ....+|.+.|.+++|+|+|++|++ .|++||.. ++....+. |.+.|.+++|+|++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 99999999876532 234579999999999999999988 89999987 55566655 788999999999986
Q ss_pred -EEEEEEcCCCcEEEeecccC------------CCeeEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q psy12365 146 -LLGIISSNSSAVNVWTLLTY------------TLGERISWSDDG-QLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 146 -~l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~-~~l~~~~~dg~i~~~~~~~ 196 (1324)
.+++ ++.|+.|++||+++. ..+.+++|+|++ .+|++|+.||.|++|+++.
T Consensus 195 ~~~~s-~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 195 TIFLS-CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp SCEEE-EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred ceeee-eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence 6777 899999999998732 468899999974 6888999999999998643
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=3.3e-21 Score=237.34 Aligned_cols=408 Identities=14% Similarity=0.121 Sum_probs=295.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCChHHHH-------HHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHH
Q psy12365 695 LCGHVAALLGNHDTAQQRYLTSDIPTMAL-------TLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQA 767 (1324)
Q Consensus 695 ~~a~~~~~~g~~~~A~~~~~~~~~~~~a~-------~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 767 (1324)
.+..+....+.|....+++.+-.+++.-. ++++++-+|..|+.+++..+|..++.+...++ ..|++.+|
T Consensus 929 eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~----~aglp~Ea 1004 (1630)
T 1xi4_A 929 ELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFM----TADLPNEL 1004 (1630)
T ss_pred HHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHH----hCCCHHHH
Confidence 34455666666766666666666665332 47889999999999999998888877655555 89999999
Q ss_pred HHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHHHHHhcCH
Q psy12365 768 LSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNY 847 (1324)
Q Consensus 768 ~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~ 847 (1324)
+++|++++...... ..+....+.++++.++. +..+..+++.+... .....+|.++..+|++++|..+|++++.+
T Consensus 1005 ieLLEKivl~~s~f----s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-~d~~eIA~Iai~lglyEEAf~IYkKa~~~ 1078 (1630)
T 1xi4_A 1005 IELLEKIVLDNSVF----SEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-YDAPDIANIAISNELFEEAFAIFRKFDVN 1078 (1630)
T ss_pred HHHHHHHHcCCCcc----cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-ccHHHHHHHHHhCCCHHHHHHHHHHcCCH
Confidence 99999999443310 11222233388888888 67888888888774 33567999999999999999999999999
Q ss_pred HHHHHHHH-HcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHh
Q psy12365 848 EKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK 926 (1324)
Q Consensus 848 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~ 926 (1324)
..++..++ ..++|++|.+++++...+.++.++|+++++.|++++|+++|.+|++++
T Consensus 1079 ~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~s----------------------- 1135 (1630)
T 1xi4_A 1079 TSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPS----------------------- 1135 (1630)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChH-----------------------
Confidence 99887777 899999999999999999999999999999999999999999965433
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH--------HHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHh
Q psy12365 927 KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ--------DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE 998 (1324)
Q Consensus 927 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~--------~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~ 998 (1324)
.+..+|..+.+.|+|++|+++|.++.+.+ .|+.+++. +.++.+.+. + ...+...+..+|..+++
T Consensus 1136 ----ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~f--I-~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1136 ----SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEF--I-NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHH--H-hCCCHHHHHHHHHHHHh
Confidence 34557788999999999999999876554 66777776 556666665 3 23455778899999999
Q ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhcccCHHHHHHHH-------------HhhccccCC
Q psy12365 999 DKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDENLWLGVSIVSDSHDEKLVETFK-------------TLLEGKLDG 1065 (1324)
Q Consensus 999 ~g~~~~A~~~y~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~ 1065 (1324)
.|+|.+|..+|.++++|.++...|.+. ++.++|++.+ +++.+......+- .... ....
T Consensus 1208 eg~YeeA~~~Y~kA~ny~rLA~tLvkL----ge~q~AIEaa----rKA~n~~aWkev~~acve~~Ef~LA~~cgl-~Iiv 1278 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNVSNFGRLASTLVHL----GEYQAAVDGA----RKANSTRTWKEVCFACVDGKEFRLAQMCGL-HIVV 1278 (1630)
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHHHHh----CCHHHHHHHH----HHhCCHHHHHHHHHHHhhhhHHHHHHHHHH-hhhc
Confidence 999999999999999999999999998 5555555555 4444444422111 1111 1233
Q ss_pred CCCChHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCC-------------CcHHHHHHH
Q psy12365 1066 VKRNPKFLYRVLMNTGDYVAASSCALDVARDEAARGSYRNCHETLYSTIQELKKHKLQ-------------VGNDLMAGL 1132 (1324)
Q Consensus 1066 ~~~~~~~l~~~y~~~~~~~~A~~~~~~~a~~~~~~g~~~~a~~~l~~~~~~~~~~~~~-------------~~~~~~~~l 1132 (1324)
.|+.+..+...|.+.|.|++|++.+ +...|--+....++.++...+.+..+. -...+.+.+
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~Ll------E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~ 1352 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITML------EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 1352 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH------HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH
Confidence 6677778888999999999998876 333333333333333443333332211 111222333
Q ss_pred HHHHHH-HHHHHHHHhCChhhHHHHHH
Q psy12365 1133 MIIHSY-LLARYHVRNANHSLAAPLLI 1158 (1324)
Q Consensus 1133 ~~~~~y-~l~~~~~~~g~~~~A~~~l~ 1158 (1324)
+-.|.+ .++..|.+.|+++.|+.+.+
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334434 45678889999999996444
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=2.8e-23 Score=241.70 Aligned_cols=185 Identities=13% Similarity=0.213 Sum_probs=159.8
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|.+.|.+++|+| +|++|++++.||+|++||. +++....+. |...|.+++|+|+|++|++++. |+.|++|++.+
T Consensus 62 l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~-d~~v~iw~~~~ 139 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL-DSACSIFNLSS 139 (380)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS-SSCCEEEECCC
T ss_pred ccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC-CCcEEEEECCC
Confidence 468999999999999 9999999999999999997 667777777 8889999999999999999998 99999999864
Q ss_pred Ce-------EEEEecCCCCCceEEEEecCC-CEEEE-----EEEEEeCC-CCeEEEEe------cCCcEEEEEEcC-CCC
Q psy12365 87 KK-------RTIVDSGLRDPLTCLVWCKQC-SMLQL-----SVSIYNKH-GKLIDKIT------LPGLCIVMDWDS-EGD 145 (1324)
Q Consensus 87 ~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~-----~i~v~d~~-g~~~~~~~------~~~~i~~~~~~~-~g~ 145 (1324)
.. ....+.+|.+.+.++.|+|++ ..|++ +|++||.. |+....+. |...|.++.|+| ++.
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 219 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC
Confidence 31 234567899999999999974 44666 89999976 66665552 677899999987 889
Q ss_pred EEEEEEcCCCcEEEeecc-cC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 146 LLGIISSNSSAVNVWTLL-TY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~-~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++++ ++.|+.|++||++ .. ..|++++|+|+|++|++++.||.|++||++.
T Consensus 220 ~l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 220 MFIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp EEEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred EEEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 9999 9999999999986 21 6799999999999999999999999999764
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.92 E-value=7.8e-23 Score=232.74 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=146.7
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-------------CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-------------HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNS 76 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-------------~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d 76 (1324)
..|...|.+++|+| ||++|++++ |+++++||. .+.....+.++..|.+++|+||+ .|++++. |
T Consensus 27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~-d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD-S 102 (344)
T ss_dssp SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET-T
T ss_pred ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC-C
Confidence 34667799999999 999998777 667777762 11223344467789999999985 6778887 9
Q ss_pred CeEEEEEcCCCeEE----EEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCC
Q psy12365 77 SAVNVWNTYTKKRT----IVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGD 145 (1324)
Q Consensus 77 ~~i~iw~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~ 145 (1324)
|.|+|||+.+++.. ....+|.+.|++++|+|+|++|++ +|++||.. ++.+..+. |.+.|.+++|+|++.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 99999999877532 334589999999999999999998 89999976 66666665 789999999999985
Q ss_pred -EEEEEEcCCCcEEEeecccC------------CCeeEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q psy12365 146 -LLGIISSNSSAVNVWTLLTY------------TLGERISWSDD-GQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 146 -~l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~-~~~l~~~~~dg~i~~~~~~ 195 (1324)
++++ ++.|++|++||+++. ..+.++.|+|+ +.++++|+.||.|++||++
T Consensus 183 ~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 183 SVFLS-CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp TEEEE-EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred Cceee-eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 6778 999999999998732 35788999984 5688899999999999864
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.6e-22 Score=223.67 Aligned_cols=181 Identities=17% Similarity=0.213 Sum_probs=150.5
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC---cEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG---KLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~---~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
.+|.+.|.+++|+| + +|++++.|++|++||... .....+. |.+.|.+++|+|++++|++++. |+.|++||
T Consensus 11 ~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-D~~v~iw~ 86 (330)
T 2hes_X 11 KLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-DSTVSIWA 86 (330)
T ss_dssp ECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-TSCEEEEE
T ss_pred ccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-CCcEEEEE
Confidence 58999999999999 6 999999999999999854 3455552 7789999999999999999998 99999999
Q ss_pred cCC-------CeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC--C---CeEEEEe-cCCcEEEEEEcCCCC
Q psy12365 84 TYT-------KKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH--G---KLIDKIT-LPGLCIVMDWDSEGD 145 (1324)
Q Consensus 84 ~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g---~~~~~~~-~~~~i~~~~~~~~g~ 145 (1324)
... ......+.+|.+.|.+++|+|+|++|++ +|++||.+ + +....+. |.+.|.+++|+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 843 3456677899999999999999999998 89999984 2 2233333 788999999999999
Q ss_pred EEEEEEcCCCcEEEeeccc------------CCCeeEEEEcCC--CCEEEEEeCCCcEEEEEcC
Q psy12365 146 LLGIISSNSSAVNVWTLLT------------YTLGERISWSDD--GQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~~------------~~~i~~~~~s~~--~~~l~~~~~dg~i~~~~~~ 195 (1324)
+|++ ++.|++|++||..+ ...|+++.|+|+ +..|++++.||.|++|++.
T Consensus 167 ~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 167 LLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred EEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 9999 99999999998752 167999999998 7789999999999999853
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=2.3e-21 Score=222.61 Aligned_cols=184 Identities=12% Similarity=0.153 Sum_probs=159.3
Q ss_pred CCCCCCeeEEEEecCC-CCEEEEEeCCCcEEEEECCC------cEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 10 EPHGPGDVYVCWQRRT-GELLATTGRDSSVSIYNKHG------KLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~-g~~l~~~~~~~~v~v~~~~~------~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
++|.+.|++++|+| + +++|++++.|++|+|||... .+...+. |.+.|.+++|+|||++|++++. |+.|++
T Consensus 35 ~GH~~~V~~v~~sp-~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~-d~~i~~ 112 (340)
T 4aow_A 35 KGHNGWVTQIATTP-QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW-DGTLRL 112 (340)
T ss_dssp CCCSSCEEEEEECT-TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEE
T ss_pred CCccCCEEEEEEeC-CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc-cccceE
Confidence 68999999999999 6 68999999999999999732 2344555 7889999999999999999998 999999
Q ss_pred EEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe---cCCcEEEEEEcCCC--CEEEEEE
Q psy12365 82 WNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT---LPGLCIVMDWDSEG--DLLGIIS 151 (1324)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~---~~~~i~~~~~~~~g--~~l~~~~ 151 (1324)
|+............+...+....++|++..|++ .+++||..+....... +...+..++|++++ .++++ +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s-~ 191 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS-C 191 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE-E
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE-E
Confidence 999988887777788889999999999999887 8999998765544443 56789999999875 46777 8
Q ss_pred cCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 152 SNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 152 ~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+.|+.|++||..+. ..|++++|+|+|++|++++.||.|++|+...
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 99999999998832 6799999999999999999999999999754
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.9e-22 Score=234.05 Aligned_cols=183 Identities=17% Similarity=0.297 Sum_probs=149.5
Q ss_pred ccCCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEEC----CC-c------EEEEEeC-----------CCCEEEEEEcC
Q psy12365 8 LEEPHGPGDVYVCWQRRTGE-LLATTGRDSSVSIYNK----HG-K------LIDKITL-----------PGLCIVMDWDS 64 (1324)
Q Consensus 8 ~~~~h~~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~----~~-~------~~~~~~~-----------~~~i~~i~~~~ 64 (1324)
....|.+.|.+++|+| +|+ +|++++.||.|++|+. .. + ....+.+ .+.|.+++|+|
T Consensus 40 ~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 3345778999999999 999 9999999999999998 43 3 2334443 45899999999
Q ss_pred CCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecC-Cc---
Q psy12365 65 EGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLP-GL--- 134 (1324)
Q Consensus 65 d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~-~~--- 134 (1324)
++++|++++. ||.|++||. ++.....+.+|...|.+++|+|+++.|++ .|++||.. ++....+... ..
T Consensus 119 ~~~~l~~~~~-dg~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 DGNSIVTGVE-NGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp TSSEEEEEET-TSCEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CCCEEEEEeC-CCeEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999998 999999994 45666677889999999999999999888 89999986 5555555532 22
Q ss_pred ------------EEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy12365 135 ------------CIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIY 192 (1324)
Q Consensus 135 ------------i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~ 192 (1324)
+.++.|+|++. +++ ++.++.|.+||+.+. ..|.++.|+|++++|++++.||.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 88899999865 666 888999999998732 678999999999999999999999999
Q ss_pred EcC
Q psy12365 193 LSK 195 (1324)
Q Consensus 193 ~~~ 195 (1324)
+..
T Consensus 275 d~~ 277 (425)
T 1r5m_A 275 HGG 277 (425)
T ss_dssp CSS
T ss_pred ECC
Confidence 754
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.90 E-value=1.3e-21 Score=247.70 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=163.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC------CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH------GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~------~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw 82 (1324)
++|.+.|++++|+|.++++|++++.|++|++|+.. +.....+. |.+.|.+++|+|+|++|++++. |+.|++|
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~-Dg~v~vw 457 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW-DGELRLW 457 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC-CCcEEEE
Confidence 58999999999998335799999999999999973 23344555 8899999999999999999998 9999999
Q ss_pred EcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-----cCCcEEEEEEcCCC--CEEEEE
Q psy12365 83 NTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-----LPGLCIVMDWDSEG--DLLGII 150 (1324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-----~~~~i~~~~~~~~g--~~l~~~ 150 (1324)
|+.++.....+.+|.+.|.+++|+|+++.|++ +|++||..+.....+. |...|.+++|+|++ ..+++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s- 536 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS- 536 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE-
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE-
Confidence 99999888888999999999999999999988 8999998876655553 66789999999987 57888
Q ss_pred EcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 151 SSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 151 ~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
++.|++|++||+++. ..|++++|+|+|++|++++.||.|++|++...
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999998732 67999999999999999999999999998653
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.6e-19 Score=222.45 Aligned_cols=362 Identities=13% Similarity=0.102 Sum_probs=253.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccc----------hhHHHHHHHhhhccc---c--------hhhHHHHHHHHc
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDE----------AGMVWCLESLVEEEE---D--------TSILCGHVAALL 703 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~----------~~~~~~l~~~~~~~~---~--------~~~~~a~~~~~~ 703 (1324)
.+|+.-....++++..|++.+|+..|+++-- ......+..+..+.. + ..-.+|.++...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 3444456666666677777777777766531 111110001100000 0 013469999999
Q ss_pred CCHHHHHHHHHhCCChHHHHHHHH-HHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC
Q psy12365 704 GNHDTAQQRYLTSDIPTMALTLRR-DLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDI 782 (1324)
Q Consensus 704 g~~~~A~~~~~~~~~~~~a~~~~~-~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~ 782 (1324)
|.+++|..+|.+.+.+..|+..+. ..++|++|++++++. +.+.++..+|.+++..|++++|++.|.++-
T Consensus 1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKAd------- 1132 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------- 1132 (1630)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-------
Confidence 999999999999999999877665 899999999999875 458899999999999999999999999971
Q ss_pred CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc--------------------------------CChHHHHHHHHHHHH
Q psy12365 783 QDPECQRKCKEGIARTSIRVGDFRLGIRLAAES--------------------------------NSSVLKNECADILQQ 830 (1324)
Q Consensus 783 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------------------------------~~~~~~~~l~~~~~~ 830 (1324)
+...+..++.++.+.|+|++|++++..+ +....+..+|+.+..
T Consensus 1133 -----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 -----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred -----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2333445788888888888888877442 112345679999999
Q ss_pred ccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcC-----------------CHHHHH
Q psy12365 831 FNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG-----------------SYRESV 893 (1324)
Q Consensus 831 ~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g-----------------~~~~A~ 893 (1324)
.|+|++|..+|.++.+|.+++.+|+++|++++|++.+++..++.++...+.++...| .+++++
T Consensus 1208 eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 1287 (1630)
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999998888766555544333 344556
Q ss_pred HHHHHhhChHHHHHHHHhccCCHHHHHHHHHH------hcChHHHHHHHHHHHHcCC-------------HHHHHHHHHH
Q psy12365 894 GAYERAEDYDNVVRVDLDHLNDIRHAVDIVKA------KKCTEGAKRIADYCNKHGD-------------FGAAIHFLIL 954 (1324)
Q Consensus 894 ~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~la~~~~~~g~-------------~~~Ai~~~~~ 954 (1324)
.+|++.|.+++|++++...++-...-..+..+ .-.++-.....++|...++ |.+++-+|.+
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 67777778877777776543321111111111 1223333444555666665 9999999999
Q ss_pred cCCHHHHHHHHHhccch----hHhhhhccCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHhCCH
Q psy12365 955 SKCYQDAFNLSQQHKKL----HEFGKFLLEEDEPNPVELKRLAIHFEEDK---------------DMFRAAQYYYHAKEY 1015 (1324)
Q Consensus 955 ~~~~~~A~~l~~~~~~~----~~~~~~l~l~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~y~~~g~~ 1015 (1324)
.+.++.|.....+|... +.+.++ +....+++.+++.+.+|.+.+ ++..++++|.+.++.
T Consensus 1368 ~~e~dnA~~tm~~h~~~a~~~~~Fk~~--i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l 1445 (1630)
T 1xi4_A 1368 YEEYDNAIITMMNHPTDAWKEGQFKDI--ITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL 1445 (1630)
T ss_pred cccHHHHHHHHHhccHhhhhhHHHHHH--hcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCCh
Confidence 99999999666666432 334444 456688999999999998777 556666666655554
Q ss_pred HHHHHHHH
Q psy12365 1016 GRAMKLLL 1023 (1324)
Q Consensus 1016 ~~A~~~~~ 1023 (1324)
.-+..++.
T Consensus 1446 ~lik~yl~ 1453 (1630)
T 1xi4_A 1446 PLVKPYLR 1453 (1630)
T ss_pred HHhHHHHH
Confidence 44444443
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=3.9e-21 Score=220.30 Aligned_cols=183 Identities=13% Similarity=0.161 Sum_probs=157.9
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-c---EEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-K---LIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~---~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw 82 (1324)
.+|...|.+++|+| ++++|++++ ||.|++|+... . ....+. +...+.+++|+|+++.+++++. |+.|++|
T Consensus 48 ~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~ 124 (337)
T 1gxr_A 48 LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-ASTLSIW 124 (337)
T ss_dssp ECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-SSEEEEE
T ss_pred ccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-CCcEEEE
Confidence 37999999999999 999999998 99999999732 2 233333 6789999999999999999998 9999999
Q ss_pred EcCCCe--EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcC
Q psy12365 83 NTYTKK--RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
|+.+++ ....+.+|...+.+++|+|+++.+++ .|.+||.. ++....+. |.+.+.+++|+|+|+.+++ ++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-GGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE-Eec
Confidence 998876 55566789999999999999999888 89999986 55555555 7889999999999999999 999
Q ss_pred CCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 154 SSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 154 ~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++.|++||+++. ..+.++.|+|+++++++++.+|.+++|+...
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999999998832 6789999999999999999999999998754
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=5.6e-21 Score=214.55 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=132.0
Q ss_pred EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEe
Q psy12365 47 LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYN 120 (1324)
Q Consensus 47 ~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d 120 (1324)
....+. |.+.|.+++|+|||++|++++. ||.|++||+.++.....+..|..+|.++.|+|++++|++ .|++||
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~-dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLY-SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 345566 8899999999999999999998 999999999999888888899999999999999999988 999999
Q ss_pred CC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEcC-CCCEEEEEeCC
Q psy12365 121 KH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWSD-DGQLLAVTTSG 186 (1324)
Q Consensus 121 ~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~-~~~~l~~~~~d 186 (1324)
.. ++....+. |.+.|.+++|+|++.++++ ++.|++|++||+++. ..|.+++|+| ++..|++++.|
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEE-EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE-ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 76 66666665 8889999999999999999 999999999998722 5789999999 67899999999
Q ss_pred CcEEEEEcC
Q psy12365 187 GSVKIYLSK 195 (1324)
Q Consensus 187 g~i~~~~~~ 195 (1324)
|.|++|++.
T Consensus 163 ~~v~iwd~~ 171 (304)
T 2ynn_A 163 RTVKVWSLG 171 (304)
T ss_dssp SEEEEEETT
T ss_pred CeEEEEECC
Confidence 999999974
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=4.8e-22 Score=227.90 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=148.6
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC--CcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH--GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR 89 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~--~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~ 89 (1324)
|..+|.+++|+| ||++++++..++.+.+|... +.....+.|.+.|.+++|+|+++++++++ |+.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTC
T ss_pred cCCceeEEEECC-CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCc
Confidence 556799999999 99999988877777666542 23444555889999999999999998886 79999999976531
Q ss_pred ---EEEe--cCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCe---EEEEe-cCCcEEEEEEcCCCCEEEEEEcCCC
Q psy12365 90 ---TIVD--SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKL---IDKIT-LPGLCIVMDWDSEGDLLGIISSNSS 155 (1324)
Q Consensus 90 ---~~~~--~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~---~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~ 155 (1324)
...+ .+|...+.+++|+|+++.|++ .|.+||..... ...+. +.+.+.+++|+|+++++++ ++.++
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS-CCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE-EETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE-EeCCC
Confidence 1222 278899999999999998888 89999987432 22332 6778999999999999999 99999
Q ss_pred cEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 156 AVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 156 ~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.|.+||+.+. ..+.++.|+|++++|++++.||.|++|+.+.
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 214 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence 9999998732 6799999999999999999999999998754
No 34
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.6e-21 Score=244.47 Aligned_cols=179 Identities=12% Similarity=0.164 Sum_probs=146.8
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR 89 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~ 89 (1324)
.|...|.+++|+| |++|++++.|++|++||. +++.+..+.+.+.|++++|+|+++++++++. ||.|++||+.++..
T Consensus 56 ~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~-dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 56 EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ-NGSMIVYDIDRDQL 132 (902)
T ss_dssp SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET-TSCEEEEETTTTEE
T ss_pred CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC-CCcEEEEECCCCcc
Confidence 4788999999999 569999999999999998 6778888888889999999999999999998 99999999998875
Q ss_pred E-----------EEecCCCCCceEEEEecCC-CEEEE-----EEEEEeCC-CCeEEEEec-------------------C
Q psy12365 90 T-----------IVDSGLRDPLTCLVWCKQC-SMLQL-----SVSIYNKH-GKLIDKITL-------------------P 132 (1324)
Q Consensus 90 ~-----------~~~~~~~~~v~~~~~s~~~-~~l~~-----~i~v~d~~-g~~~~~~~~-------------------~ 132 (1324)
. ....+|.+.|.+++|+|++ ..+++ .| +||.+ ++....+.. .
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 3 1235788999999999974 56666 88 99987 445555542 3
Q ss_pred CcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------------------------CCeeEEEEc----CCC-CE
Q psy12365 133 GLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------------------------TLGERISWS----DDG-QL 179 (1324)
Q Consensus 133 ~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------------------------~~i~~~~~s----~~~-~~ 179 (1324)
+.|.+++|+|+|.+|++ ++.|+.|++||.++. ..|.+++|+ |++ .+
T Consensus 212 ~~V~~v~fspdg~~las-gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIIT-IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECTTSSEEEE-EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 67999999999999999 999999999998521 148899995 443 46
Q ss_pred EEEEeCC-----CcEEEEEc
Q psy12365 180 LAVTTSG-----GSVKIYLS 194 (1324)
Q Consensus 180 l~~~~~d-----g~i~~~~~ 194 (1324)
+++|+.+ +.+.+|+.
T Consensus 291 l~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEE
T ss_pred EEeCCCCCCCCCceEEEEec
Confidence 7777665 37888874
No 35
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=1.7e-21 Score=229.00 Aligned_cols=143 Identities=13% Similarity=0.179 Sum_probs=129.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeE
Q psy12365 53 LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLI 126 (1324)
Q Consensus 53 ~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~ 126 (1324)
|.+.|++++|+|++..+++++. |++|++||..+++....+.+|.+.|.+++|+|+|++|++ +|++||.. ++..
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~-Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASE-DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEES-SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 7889999999999999999998 999999999999888888999999999999999999988 89999987 4455
Q ss_pred EEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 127 DKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 127 ~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
..+. |.+.|.+++|+|+|.++++ ++.|++|++||+.+. ..|..+.|+|+|.++++++.||.|++|++.
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s-~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 5443 7789999999999999999 999999999998732 568999999999999999999999999986
Q ss_pred CC
Q psy12365 196 LP 197 (1324)
Q Consensus 196 ~~ 197 (1324)
..
T Consensus 265 ~~ 266 (410)
T 1vyh_C 265 TK 266 (410)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=3e-21 Score=225.57 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=160.7
Q ss_pred CCCCCCeeEEEEecCCC-CEEEEEeCCCcEEEEECC-CcEEEEEe---CCCCEEEEEEcC-CCCEEEEEEcCCCeEEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTG-ELLATTGRDSSVSIYNKH-GKLIDKIT---LPGLCIVMDWDS-EGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g-~~l~~~~~~~~v~v~~~~-~~~~~~~~---~~~~i~~i~~~~-d~~~l~~~~~~d~~i~iw~ 83 (1324)
.+|...|.+++|+| +| ++|++++.||.|++||.. ++....+. |.+.|.+++|+| ++..|++++. |+.|++||
T Consensus 70 ~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd 147 (383)
T 3ei3_B 70 SPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-RGATTLRD 147 (383)
T ss_dssp CCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-TTEEEEEE
T ss_pred cCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-CCEEEEEE
Confidence 58999999999999 98 999999999999999984 45555554 788999999999 7789999988 99999999
Q ss_pred cCCCeEEEEe--cCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCC-EEEEEEcCC
Q psy12365 84 TYTKKRTIVD--SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGD-LLGIISSNS 154 (1324)
Q Consensus 84 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~-~l~~~~~~~ 154 (1324)
+.+....... .+|...|.+++|+|+++.|++ .|++||.+++....+. |.+.|.+++|+|++. ++++ ++.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~d 226 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMAT-SSVD 226 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEE-EETT
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEE-EeCC
Confidence 9975544332 233478999999999999988 9999999988777776 788999999999999 8888 9999
Q ss_pred CcEEEeeccc----C---------CCeeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q psy12365 155 SAVNVWTLLT----Y---------TLGERISWSD-DGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 155 ~~i~iwd~~~----~---------~~i~~~~~s~-~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+.|++||+++ . ..|+++.|+| +|.+|++++.||.|++|+++.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 9999999984 2 6789999999 999999999999999999764
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.1e-21 Score=220.81 Aligned_cols=184 Identities=16% Similarity=0.236 Sum_probs=161.5
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|.+.|.+++|+| +|++|++++.||.|++||. +++.+..+. |.+.|.+++|+|++++|++++. |+.|++||+.+
T Consensus 28 l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 105 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-DYSIKLWDVSN 105 (369)
T ss_dssp EECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TTEEEEEETTT
T ss_pred EEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Confidence 368999999999999 9999999999999999997 678888887 8899999999999999999998 99999999998
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE----------EEEEEeCC-CC-----------eEEEE-ecCC--cEEEEEEc
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL----------SVSIYNKH-GK-----------LIDKI-TLPG--LCIVMDWD 141 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~----------~i~v~d~~-g~-----------~~~~~-~~~~--~i~~~~~~ 141 (1324)
++....+. +...+.+++|+|++..+++ .|.+||.. +. ....+ .+.+ .+.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 88877765 8889999999999999887 68899965 11 11111 2444 89999999
Q ss_pred CCCCEEEEEEcCCCcEEEeeccc-C----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 142 SEGDLLGIISSNSSAVNVWTLLT-Y----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 142 ~~g~~l~~~~~~~~~i~iwd~~~-~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
|+|+++++ ++.++.|.+||+.+ . ..|.++.|+|++++|++++.||.|++|++..
T Consensus 185 ~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 185 TKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp GGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 99999999 99999999999984 2 6799999999999999999999999999765
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.89 E-value=3.2e-22 Score=237.62 Aligned_cols=185 Identities=14% Similarity=0.172 Sum_probs=155.1
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-CcEEEEE--e-CCCCEEEEEEcC-CCCEEEEEEcCCCeEEEEEc
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GKLIDKI--T-LPGLCIVMDWDS-EGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~~~~~~--~-~~~~i~~i~~~~-d~~~l~~~~~~d~~i~iw~~ 84 (1324)
.+|...|++++|+|.++++||+|+.||+|+|||.. ++....+ . |.+.|.+++|+| ++.+|++++. |++|++||+
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~-D~~v~iwd~ 194 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-EGTTRLQDF 194 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS-SSCEEEEET
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC-CCEEEEeec
Confidence 36888999999999556799999999999999984 3333333 2 789999999998 7889999988 999999999
Q ss_pred CCCeEEEEecC--CCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCC-EEEEEEcCCC
Q psy12365 85 YTKKRTIVDSG--LRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGD-LLGIISSNSS 155 (1324)
Q Consensus 85 ~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~-~l~~~~~~~~ 155 (1324)
+++........ +...+.+++|+|++.+|++ .|++||.+++....+. |.+.|.+++|+|++. ++++ ++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s-~s~d~ 273 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT-ASVDQ 273 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE-EETTS
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE-ecCcc
Confidence 98766555443 3445789999999999988 8999999887665554 788999999999987 6667 99999
Q ss_pred cEEEeecccC-------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 156 AVNVWTLLTY-------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 156 ~i~iwd~~~~-------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.|++||+++. ..|++++|+|+|.+|++++.||.|++|++..
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 9999998721 5789999999999999999999999999764
No 39
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.89 E-value=2.1e-20 Score=224.77 Aligned_cols=178 Identities=13% Similarity=0.226 Sum_probs=133.8
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|...+.. ++++ ++++|++++.||.|++||. +++.+..+. |.+.|.+++|+|++ .+++++. ||.|++||+.++
T Consensus 118 ~~h~~~v~~-~~~~-~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~-dg~i~vwd~~~~ 193 (464)
T 3v7d_B 118 RGHMTSVIT-CLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST-DRTVRVWDIKKG 193 (464)
T ss_dssp ECCSSSCEE-EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET-TSCEEEEETTTT
T ss_pred cCCCCCcEE-EEEE-CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC-CCCEEEEECCCC
Confidence 578877533 3444 5689999999999999997 677888887 88999999999988 8888888 999999999999
Q ss_pred eEEEEecCCCCCceEEEEec--CCCEEEE-----EEEEEeCCCCe-EE-----------------------EE-ecCCcE
Q psy12365 88 KRTIVDSGLRDPLTCLVWCK--QCSMLQL-----SVSIYNKHGKL-ID-----------------------KI-TLPGLC 135 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~--~~~~l~~-----~i~v~d~~g~~-~~-----------------------~~-~~~~~i 135 (1324)
+....+.+|.+.|.+++|+| ++..+++ .|++||..... .. .+ .|...+
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 98888999999999999995 6777877 89999976321 11 11 133444
Q ss_pred EEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 136 IVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 136 ~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
.++ ++++.++++ ++.|+.|++||+.+. ..|.++.|+|+++++++++.||.|++|+.
T Consensus 274 ~~~--~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 274 RTV--SGHGNIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp EEE--EEETTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEE--cCCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 444 456666666 666777777766521 45666677777777777777777766665
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=3.3e-20 Score=221.52 Aligned_cols=176 Identities=14% Similarity=0.243 Sum_probs=150.9
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|.+.+.. ++++ +|++|++++.||.|++||. +++.+..+. |.+.|.++.|+ ++.+++++. ||.|++||+.++
T Consensus 115 ~~h~~~v~~-~~~~-~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~-dg~i~vwd~~~~ 189 (445)
T 2ovr_B 115 KGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGST-DRTLKVWNAETG 189 (445)
T ss_dssp ECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEET-TSCEEEEETTTT
T ss_pred cccCCCcEE-EEEE-cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeC-CCeEEEEECCcC
Confidence 578887644 4777 8899999999999999997 677777777 88999999998 568999988 999999999999
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEe
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 160 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iw 160 (1324)
+....+.+|...|.++.|++ ..+++ .|++||.. ++....+. |.+.+.++.| +|..+++ ++.|+.|++|
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~-~~~dg~i~iw 264 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS-GAYDFMVKVW 264 (445)
T ss_dssp EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE-EETTSCEEEE
T ss_pred cEEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE-EcCCCEEEEE
Confidence 98888899999999999964 45665 99999976 66666654 7889999999 7889999 9999999999
Q ss_pred ecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 161 TLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 161 d~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
|..+. ..|.++.| ++.++++++.||.|++|+....
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC
Confidence 98732 67888888 7899999999999999998654
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=3e-21 Score=229.00 Aligned_cols=180 Identities=10% Similarity=0.055 Sum_probs=150.6
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEECCCcE-EEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEe
Q psy12365 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKL-IDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVD 93 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~-~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~ 93 (1324)
.+.+++|+| +|++|++++.||.|++||..... ...+.....+....|+|+++.|++++. |+.|++||+.+++....+
T Consensus 58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTT-EGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CCTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEET-TSCEEEECTTSCEEEEET
T ss_pred cccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEEC-CCCEEEEeCCCcceeeec
Confidence 355899999 99999999999999999974422 222222344555578999999999998 999999999999988888
Q ss_pred cCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-
Q psy12365 94 SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY- 165 (1324)
Q Consensus 94 ~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~- 165 (1324)
.+|.+.|.+++|+|+++.|++ .|++||.. ++....+. |.+.|.+++|+|+|..+++ ++.|+.|++||+++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS-ASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEE-EcCCCcEEEeECCCCc
Confidence 899999999999999999988 89999976 66666665 8899999999999999999 999999999998732
Q ss_pred ------------CCee---------------------EEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 166 ------------TLGE---------------------RISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 166 ------------~~i~---------------------~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
..+. ++.|+|+|++|++++.||.|++|++...
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 2233 3456889999999999999999998654
No 42
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.89 E-value=1.9e-21 Score=219.69 Aligned_cols=182 Identities=15% Similarity=0.246 Sum_probs=164.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
..|...+.+++|+| +|++|++++.+|.|++|+. .++....+. +...+.+++|+|||++|++++. |+.|++||+.++
T Consensus 119 ~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~-dg~i~iwd~~~~ 196 (321)
T 3ow8_A 119 DAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI-DGIINIFDIATG 196 (321)
T ss_dssp ECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTT
T ss_pred eCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC-CCeEEEEECCCC
Confidence 35777899999999 9999999999999999998 566666666 6778999999999999999998 999999999999
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEe
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 160 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iw 160 (1324)
+....+.+|...|.+++|+|++++|++ .|++||.. ++....+. |.+.|.+++|+|+|.+|++ ++.|++|++|
T Consensus 197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s-~s~D~~v~iw 275 (321)
T 3ow8_A 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS-SSSDKSVKVW 275 (321)
T ss_dssp EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE-EeCCCcEEEE
Confidence 998888999999999999999999988 89999986 55555555 7788999999999999999 9999999999
Q ss_pred ecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 161 TLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 161 d~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
|+.+. ..|++++|+|+|+.|++++.||.|++|+.
T Consensus 276 d~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 276 DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred eCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 98732 67999999999999999999999999995
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.8e-21 Score=224.99 Aligned_cols=181 Identities=15% Similarity=0.271 Sum_probs=158.8
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
|.+.|.+++|+| +|++|++++.||.|++||.+++.+..+. |.+.|.+++|+|+++.|++++. |+.|++||+.+++..
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVISGTVM 184 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-TCCEEEEETTTTEEE
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEec-CCeEEEEECCCCcEE
Confidence 677999999999 9999999999999999999999888888 8899999999999999999998 999999999999888
Q ss_pred EEecCCCCC---------------ceEEEEecCCCEEEE----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEE
Q psy12365 91 IVDSGLRDP---------------LTCLVWCKQCSMLQL----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 91 ~~~~~~~~~---------------v~~~~~s~~~~~l~~----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~ 149 (1324)
..+..+... +.++.|+|++.+++. .|.+||.. ++....+. +.+.|.+++|+|+++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 877777766 999999999876555 89999987 45554553 7889999999999999999
Q ss_pred EEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 150 ISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++.++.|++||+.+. ..|.++.|+|++ .+++++.||.|++|++..
T Consensus 265 -~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 265 -ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp -EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred -EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 999999999998732 678999999999 999999999999999754
No 44
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.3e-20 Score=235.10 Aligned_cols=320 Identities=11% Similarity=-0.002 Sum_probs=213.4
Q ss_pred HHHHHHHhhcHHHHHHHHHhh----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHH
Q psy12365 624 SLHKVLKLLNWKEAWNICAVL----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHV 699 (1324)
Q Consensus 624 ~~~~~l~~~~~~~A~~~~~~~----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~ 699 (1324)
.+..++..|++++|..+++.+ ++...|..++..+...|++++|+..|.++... .. ....+..++.+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~l~~~ 159 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---------NR-SSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---------GT-CHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---------cc-chhHHHHHHHH
Confidence 344455666666666655543 45556666666666666666666666554321 11 23344556666
Q ss_pred HHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q psy12365 700 AALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELAT 779 (1324)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~ 779 (1324)
+...|++++|++.|.+..........+...+.. ....+....++..+|..|...|++++|++.|++++..+|
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ--------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CC--------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhHHHHHHHHhccCCcccccccccccccc--------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 666666666666665422110000000000000 000112357889999999999999999999999999888
Q ss_pred CCCCChhhHHh------------------------------------hhchHHHHHHhcCCHHHHHHHHHhcCC----hH
Q psy12365 780 PDIQDPECQRK------------------------------------CKEGIARTSIRVGDFRLGIRLAAESNS----SV 819 (1324)
Q Consensus 780 ~~~~~~~~~~~------------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~----~~ 819 (1324)
.. .... .+..++..|.+.|++++|+++++++.. ..
T Consensus 232 ~~-----~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 306 (597)
T 2xpi_A 232 KC-----YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306 (597)
T ss_dssp TC-----HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHH
T ss_pred hh-----hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHH
Confidence 61 1111 112225566688999999999999844 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHc
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAM 886 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~ 886 (1324)
++..+|..+...|++++|..+|+++.. +..++.+|.+.|++++|..+++++. +..++..+|..|...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 899999999999999999999999853 6778899999999999999998764 677888899999999
Q ss_pred CCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHH
Q psy12365 887 GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQ 966 (1324)
Q Consensus 887 g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~ 966 (1324)
|++++|++.|.++.+ + ...+..+...++..|.+.|++++|+++|.++.
T Consensus 387 g~~~~A~~~~~~~~~------~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------- 434 (597)
T 2xpi_A 387 NKISEARRYFSKSST------M----------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA---------- 434 (597)
T ss_dssp TCHHHHHHHHHHHHH------H----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------
T ss_pred ccHHHHHHHHHHHHH------h----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------
Confidence 999999999998431 1 11234456678888888888888888777650
Q ss_pred hccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 967 QHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 967 ~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+ + .+.+...+..++..|...|++++|..+|.+
T Consensus 435 -----~-------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 435 -----R-------L-FQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp -----H-------T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----H-------h-CccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 1 334566777777666665555555555443
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.5e-21 Score=220.27 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=156.7
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCC-EEEEEEcCCCeEEEEEcC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGD-LLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~-~l~~~~~~d~~i~iw~~~ 85 (1324)
..+|.+.|.+++|+| +|++|++++.|++|++||. +++.+..+. |.+.|.+++|+|++. .|++++. |+.|++||+.
T Consensus 123 ~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~-D~~v~iwd~~ 200 (344)
T 4gqb_B 123 KYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE-DNRILLWDTR 200 (344)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEET-TSCEEEEETT
T ss_pred ccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecc-cccccccccc
Confidence 358999999999999 9999999999999999998 677888887 889999999999985 6778887 9999999999
Q ss_pred CCeEEEEec--CCCCCceEEEEecC-CCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCC-CEEEEEEcCC
Q psy12365 86 TKKRTIVDS--GLRDPLTCLVWCKQ-CSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEG-DLLGIISSNS 154 (1324)
Q Consensus 86 ~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g-~~l~~~~~~~ 154 (1324)
+++....+. .+...+.+++|+|+ +.++++ .|++||.+ ++.+..+. |.+.|++++|+|+| ++|++ ++.|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las-gs~D 279 (344)
T 4gqb_B 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS-LSED 279 (344)
T ss_dssp SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE-EETT
T ss_pred ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE-EeCC
Confidence 887665543 45567899999996 556666 89999976 66666665 78899999999998 57888 9999
Q ss_pred CcEEEeecccC---------CCeeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCce
Q psy12365 155 SAVNVWTLLTY---------TLGERISWSDDGQ-LLAVTTSGGSVKIYLSKLPKL 199 (1324)
Q Consensus 155 ~~i~iwd~~~~---------~~i~~~~~s~~~~-~l~~~~~dg~i~~~~~~~~~~ 199 (1324)
++|+|||..+. ..|++++|+|+++ +|++++.||+|++|++....+
T Consensus 280 ~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 280 CSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999998833 6799999999986 577899999999999876544
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.88 E-value=2.5e-20 Score=216.43 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=129.9
Q ss_pred CCCCCCeeEEEEecCC----CCEEEEEeCCCcEEEEECC-CcEEEEEe------CCCCEEEEEEcCC----CCEEEEEEc
Q psy12365 10 EPHGPGDVYVCWQRRT----GELLATTGRDSSVSIYNKH-GKLIDKIT------LPGLCIVMDWDSE----GDLLGIISS 74 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~----g~~l~~~~~~~~v~v~~~~-~~~~~~~~------~~~~i~~i~~~~d----~~~l~~~~~ 74 (1324)
.+|...|.+++|+| + ...+++++.++.|++||.. ++.+..+. +.+.|.+++|+|+ |.+|++++.
T Consensus 15 ~~h~~~v~~i~~~p-~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECT-TCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEec-ccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 58999999999998 5 4456666667799999984 55555554 4578999999999 668999988
Q ss_pred CCCeEEEEEcCCCeEEEEecCCCCCceEEEEec-CCCEEEE-----EEEEEeCC-CCeEEEE----ecCCcEEEEEEcCC
Q psy12365 75 NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCK-QCSMLQL-----SVSIYNKH-GKLIDKI----TLPGLCIVMDWDSE 143 (1324)
Q Consensus 75 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~-----~i~v~d~~-g~~~~~~----~~~~~i~~~~~~~~ 143 (1324)
||.|++||+.+++....+.+|...|.+++|+| ++..|++ .|++||.. ++....+ .+.+.|.+++|+|+
T Consensus 94 -dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 94 -RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp -TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred -CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99999999999988888889999999999999 8898888 89999987 5666665 37889999999999
Q ss_pred CCEEEEEEcCCCcEEEeecc
Q psy12365 144 GDLLGIISSNSSAVNVWTLL 163 (1324)
Q Consensus 144 g~~l~~~~~~~~~i~iwd~~ 163 (1324)
|.++++ ++.|+.|++||++
T Consensus 173 ~~~l~~-~~~dg~i~i~d~~ 191 (366)
T 3k26_A 173 GEKIMS-CGMDHSLKLWRIN 191 (366)
T ss_dssp SSEEEE-EETTSCEEEEESC
T ss_pred CCEEEE-ecCCCCEEEEECC
Confidence 999999 9999999999988
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-20 Score=209.37 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=151.3
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|.+.|.+++| | ++++|++++.||.|++||.. +.....+. |.+.|.+++|+|+++.+++++. |+.|++|++..
T Consensus 14 l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~~~~~ 90 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-DTMINGVPLFA 90 (313)
T ss_dssp ECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-TSCEEEEETTC
T ss_pred hhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-CCeEEEEEeee
Confidence 3689999999999 8 99999999999999999984 44555555 8899999999999999999998 99999999864
Q ss_pred C---eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcC-CCCEEEEEEcCCCc
Q psy12365 87 K---KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDS-EGDLLGIISSNSSA 156 (1324)
Q Consensus 87 ~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~-~g~~l~~~~~~~~~ 156 (1324)
. +....+.+|...+.++.| ++..+++ .|++|| .++....+. +.+.+.++.|+| ++..+++ ++.++.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~ 166 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLT-ASADKT 166 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEE-EETTSC
T ss_pred cCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEE-EECCCC
Confidence 3 445566789999999999 4566766 999999 555444444 788999999998 8999999 999999
Q ss_pred EEEeeccc---------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 157 VNVWTLLT---------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 157 i~iwd~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
|++||... ...+.++.|+|++. +++++.||.|++|+.+.
T Consensus 167 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 167 IKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp EEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred EEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 99999661 16789999999988 88999999999998753
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.88 E-value=4.6e-20 Score=217.88 Aligned_cols=184 Identities=15% Similarity=0.257 Sum_probs=155.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-CcEEEEEe--------------CCCCEEEEEEcC-CCCEEEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GKLIDKIT--------------LPGLCIVMDWDS-EGDLLGIIS 73 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~~~~~~~--------------~~~~i~~i~~~~-d~~~l~~~~ 73 (1324)
.+|.+.|.+++|+|.+|++|++++.||.|++||.. +.....+. |.+.|.+++|+| ++..|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 57999999999998789999999999999999984 32222221 778999999999 777899998
Q ss_pred cCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCC---EEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCC
Q psy12365 74 SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCS---MLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSE 143 (1324)
Q Consensus 74 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~ 143 (1324)
. |+.|++||+.+++....+. +...+.++.|+|.+. .+++ .|.+||.. ++....+. |.+.|.+++|+|+
T Consensus 120 ~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 120 F-DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp T-TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred C-CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 8 9999999999988877664 778899999999644 7776 89999976 55566665 7889999999999
Q ss_pred CC-EEEEEEcCCCcEEEeeccc--------------------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 144 GD-LLGIISSNSSAVNVWTLLT--------------------------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 144 g~-~l~~~~~~~~~i~iwd~~~--------------------------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+. .+++ ++.|+.|++||+++ ...|.+++|+|+|++|++++.||.+++|++..
T Consensus 198 ~~~ll~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 198 YDYILAT-ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTEEEE-EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCcEEEE-EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 98 5777 99999999999851 15689999999999999999999999999754
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.1e-22 Score=234.14 Aligned_cols=181 Identities=13% Similarity=0.219 Sum_probs=149.7
Q ss_pred CCCeeEEEEecCCCC-EEEEE----------eCCCcEEEEECCCc----EEEEEeCCCCEEEEEEcCCCCEEEEEEcCCC
Q psy12365 13 GPGDVYVCWQRRTGE-LLATT----------GRDSSVSIYNKHGK----LIDKITLPGLCIVMDWDSEGDLLGIISSNSS 77 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~-~l~~~----------~~~~~v~v~~~~~~----~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~ 77 (1324)
...|.+++|+| +|+ +|+++ +.|+.|++||.... .+..+.|...|.+++|+|++.+|++++. |+
T Consensus 12 ~~~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg 89 (416)
T 2pm9_A 12 FSRTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD-NG 89 (416)
T ss_dssp EEESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES-SS
T ss_pred hhhcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc-CC
Confidence 35688999999 987 89998 78999999998432 4444558889999999999999999998 99
Q ss_pred eEEEEEcCC----CeEEEEecCCCCCceEEEEecC-CCEEEE-----EEEEEeCCCCe-------EEEE----ecCCcEE
Q psy12365 78 AVNVWNTYT----KKRTIVDSGLRDPLTCLVWCKQ-CSMLQL-----SVSIYNKHGKL-------IDKI----TLPGLCI 136 (1324)
Q Consensus 78 ~i~iw~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~-----~i~v~d~~g~~-------~~~~----~~~~~i~ 136 (1324)
.|++||+.+ .+....+.+|...|.+++|+|+ +.+|++ .|++||..... ...+ .|.+.|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 3466777899999999999998 888887 89999987332 2222 3778999
Q ss_pred EEEEcCC-CCEEEEEEcCCCcEEEeeccc----------------CCCeeEEEEcCCC-CEEEEEeCCC---cEEEEEcC
Q psy12365 137 VMDWDSE-GDLLGIISSNSSAVNVWTLLT----------------YTLGERISWSDDG-QLLAVTTSGG---SVKIYLSK 195 (1324)
Q Consensus 137 ~~~~~~~-g~~l~~~~~~~~~i~iwd~~~----------------~~~i~~~~~s~~~-~~l~~~~~dg---~i~~~~~~ 195 (1324)
+++|+|+ +.++++ ++.|+.|++||+++ ...|.++.|+|++ .++++++.|| .|++|+++
T Consensus 170 ~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 170 SLAWNQSLAHVFAS-AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEECSSCTTEEEE-ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EEEeCCCCCcEEEE-EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999999 688888 99999999999873 2458889999987 5888888888 88888764
Q ss_pred C
Q psy12365 196 L 196 (1324)
Q Consensus 196 ~ 196 (1324)
.
T Consensus 249 ~ 249 (416)
T 2pm9_A 249 N 249 (416)
T ss_dssp S
T ss_pred C
Confidence 3
No 50
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.6e-20 Score=219.92 Aligned_cols=324 Identities=14% Similarity=0.091 Sum_probs=237.7
Q ss_pred HHHHHhhcHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHH
Q psy12365 626 HKVLKLLNWKEAWNICAVL-----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVA 700 (1324)
Q Consensus 626 ~~~l~~~~~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 700 (1324)
..++..|++++|.+.+... .+...+..++..+...++++.|...+..+. ..... ..+.+..+|.++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~--------~~~p~-~~~~~~~lg~~~ 77 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--------KQNPL-LAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTT-CHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCC-chHHHHHHHHHH
Confidence 4567899999999988765 557889999999999999999999877542 22223 456789999999
Q ss_pred HHcCCHHHHHHHHHhCCC--hH------HHHHHHHHHhhHHHHHHHHHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 701 ALLGNHDTAQQRYLTSDI--PT------MALTLRRDLRQWREALALATSL--GSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 701 ~~~g~~~~A~~~~~~~~~--~~------~a~~~~~~~~~~~~Al~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
...|++++|+..|.++.+ |+ .....+...|++++|+..+++. ..++...++..+|.++...|++++|++.
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999987531 11 2345567777888887776662 2345566777888888888888888888
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
|++++...|. ....+..++.++.+.|++++|++.++++ ++ ..++..+|.++...|++++|+..|+++.
T Consensus 158 ~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 158 YLKAIETQPN-------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887776 4556667788888888888888877776 22 6777888888888888888888887765
Q ss_pred C--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhc
Q psy12365 846 N--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH 912 (1324)
Q Consensus 846 ~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~ 912 (1324)
. +..++.+|...|++++|++.+++.. .+.++..+|..+...|++++|++.|.++. .+.
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------~~~--- 301 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL------RLC--- 301 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH------HHC---
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhC---
Confidence 3 4456677888888888887776653 56677778888888888888888887733 111
Q ss_pred cCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHH
Q psy12365 913 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKR 991 (1324)
Q Consensus 913 ~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~ 991 (1324)
+.+.++...+|.++.+.|++++|+++|.++ +. .|.....+..
T Consensus 302 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~~~~~ 344 (388)
T 1w3b_A 302 -------------PTHADSLNNLANIKREQGNIEEAVRLYRKA------------------------LEVFPEFAAAHSN 344 (388)
T ss_dssp -------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH------------------------TTSCTTCHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HhcCCCcHHHHHH
Confidence 133445667888888888888888887776 33 4566777888
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy12365 992 LAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 992 la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+|..|...|++.+|...|.+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 88776666665555555544
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.88 E-value=6.2e-21 Score=218.15 Aligned_cols=180 Identities=12% Similarity=0.194 Sum_probs=161.7
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|.+.|.++.|+| ++. +++++.|++|++||. +++.+..+. |.+.|.+++|+|++..+++++. |+.|++||+.++
T Consensus 140 ~~h~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~-d~~v~~wd~~~~ 216 (340)
T 1got_B 140 AGHTGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-DASAKLWDVREG 216 (340)
T ss_dssp ECCSSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTC
T ss_pred cCCCccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEECCCC
Confidence 47899999999999 775 788999999999997 677777777 8899999999999999999998 999999999999
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecC---CcEEEEEEcCCCCEEEEEEcCCCcEE
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLP---GLCIVMDWDSEGDLLGIISSNSSAVN 158 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~---~~i~~~~~~~~g~~l~~~~~~~~~i~ 158 (1324)
.....+.+|...|.+++|+|++..|++ +|++||.+ ++....+.+. ..|.+++|+|+|.++++ ++.|+.|+
T Consensus 217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~d~~i~ 295 (340)
T 1got_B 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCN 295 (340)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE-EETTSEEE
T ss_pred eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE-ECCCCeEE
Confidence 888888999999999999999999988 89999987 5555555544 37999999999999999 99999999
Q ss_pred EeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy12365 159 VWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYL 193 (1324)
Q Consensus 159 iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~ 193 (1324)
+||..+. ..|.++.|+|+|.+|++|+.||.|++|+
T Consensus 296 vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9998632 6899999999999999999999999996
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.87 E-value=1.9e-20 Score=220.15 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=152.9
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-Cc------EEEEEe-CCCCEEEEEEcCC----C---CEEEEEE
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GK------LIDKIT-LPGLCIVMDWDSE----G---DLLGIIS 73 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~------~~~~~~-~~~~i~~i~~~~d----~---~~l~~~~ 73 (1324)
..+|.+.|.+++|+| ++|++++.||.|++|+.. ++ ....+. |...|.+++|+|+ | .+|++++
T Consensus 12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 458999999999998 799999999999999984 34 466666 8899999999999 9 9999999
Q ss_pred cCCCeEEEEEcCCCeE-----EEEecCC-----CCCceEEEEe----cCCCE-EEE-----EEEEEeCCC-------CeE
Q psy12365 74 SNSSAVNVWNTYTKKR-----TIVDSGL-----RDPLTCLVWC----KQCSM-LQL-----SVSIYNKHG-------KLI 126 (1324)
Q Consensus 74 ~~d~~i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~-l~~-----~i~v~d~~g-------~~~ 126 (1324)
. |+.|++|++.+++. ...+..| ...|.+++|+ |+++. |++ .|++||... +..
T Consensus 89 ~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 89 F-SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp T-TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred C-CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 8 99999999987764 6667778 5889999999 99998 877 899999654 333
Q ss_pred E-----EEe--------cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeeccc----------------CCCeeEEEEcCCC
Q psy12365 127 D-----KIT--------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLT----------------YTLGERISWSDDG 177 (1324)
Q Consensus 127 ~-----~~~--------~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~----------------~~~i~~~~~s~~~ 177 (1324)
. .+. +...|.+++|+|+| .+++ ++.++.|++||+++ ...|.++.|+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 3 442 57889999999999 8888 99999999999872 3358899999999
Q ss_pred CEEEEEeCC---CcEEEEEcCC
Q psy12365 178 QLLAVTTSG---GSVKIYLSKL 196 (1324)
Q Consensus 178 ~~l~~~~~d---g~i~~~~~~~ 196 (1324)
.+|++++.| |.|++|++..
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEecCCCCceEEEEECCC
Confidence 999999999 9999999764
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.87 E-value=5.4e-20 Score=214.11 Aligned_cols=183 Identities=14% Similarity=0.252 Sum_probs=157.8
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCc---EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGK---LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~---~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
.|..+|.+++|+| +|++|++++.++.|++||..+. .+..+. |.+.|.+++|+|+++.|++++. |+.|++||+.+
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 83 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-DRNAYVWTLKG 83 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-TSCEEEEEEET
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-CCeEEEEECCC
Confidence 4888999999999 9999999999999999998544 666776 8899999999999999999998 99999999988
Q ss_pred CeEEEE--ecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCe----EEEEe--cCCcEEEEEEcCCCCEEEEEEcC
Q psy12365 87 KKRTIV--DSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKL----IDKIT--LPGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 87 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~----~~~~~--~~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
++.... ..+|...+.+++|+|+++.|++ .|++||.+... ...+. |.+.|.+++|+|++.++++ ++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA-GSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE-EET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE-EcC
Confidence 864433 3578899999999999999988 79999976322 23332 6789999999999999999 999
Q ss_pred CCcEEEeecc------------------c----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 154 SSAVNVWTLL------------------T----------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 154 ~~~i~iwd~~------------------~----------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
|+.|++||+. . ...|.++.|+|++++|++++.||.|++|+.+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999952 1 15799999999999999999999999999864
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=3.7e-20 Score=214.12 Aligned_cols=184 Identities=9% Similarity=0.150 Sum_probs=150.7
Q ss_pred cCCCCCCeeEEEEecCCCCEEEE-EeC---CCcEEEEECCC-cEEE--EEeCCCCEEEEEEcCC---CCEEEEEEcCCCe
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLAT-TGR---DSSVSIYNKHG-KLID--KITLPGLCIVMDWDSE---GDLLGIISSNSSA 78 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~-~~~---~~~v~v~~~~~-~~~~--~~~~~~~i~~i~~~~d---~~~l~~~~~~d~~ 78 (1324)
..+|...|.+++|+| ++..+++ ++. ||.|++||..+ +... .+.|.+.|.+++|+|+ |..|++++. |+.
T Consensus 14 ~~~h~~~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~ 91 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF-GGN 91 (357)
T ss_dssp EEECSSCEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET-TSC
T ss_pred ccCCCCceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC-CCe
Confidence 357999999999999 9976654 444 89999999844 4432 3348899999999999 699999998 999
Q ss_pred EEEEEcCCCe-EEEEecCCCCCceEEEE------ecCCCEEEE-----EEEEEeCC-CC-eEEEEe-c----CCcEEEEE
Q psy12365 79 VNVWNTYTKK-RTIVDSGLRDPLTCLVW------CKQCSMLQL-----SVSIYNKH-GK-LIDKIT-L----PGLCIVMD 139 (1324)
Q Consensus 79 i~iw~~~~~~-~~~~~~~~~~~v~~~~~------s~~~~~l~~-----~i~v~d~~-g~-~~~~~~-~----~~~i~~~~ 139 (1324)
|++||+.+++ ....+.+|...|.++.| +|+++.|++ .|++||.. ++ ....+. + ...+.++.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999998876 66777899999999965 678999888 89999987 33 455554 2 23788888
Q ss_pred ----EcCCCCEEEEEEcCCCcEEEeecccC---------CCeeEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q psy12365 140 ----WDSEGDLLGIISSNSSAVNVWTLLTY---------TLGERISWSD---DGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 140 ----~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~s~---~~~~l~~~~~dg~i~~~~~~ 195 (1324)
|+|++.++++ ++.++.|++||+++. ..|.++.|+| ++.++++++.||.|++|+.+
T Consensus 172 ~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 172 FGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EECCCC-CCCEEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred EEeccCCCCCEEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 7899999999 999999999999832 6899999999 99999999999999999864
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.1e-21 Score=226.49 Aligned_cols=183 Identities=16% Similarity=0.252 Sum_probs=152.2
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC---cEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG---KLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~---~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
|.+.|.+++|+| +|++|++++.|+.|++||..+ +....+. |.+.|.+++|+|++++|++++. |+.|++||+.++
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-DRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-TSSEEEC-----
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCC
Confidence 567899999999 999999999999999999854 4444555 7889999999999999999998 999999999877
Q ss_pred e---EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCC----eEEEEe--cCCcEEEEEEcCCCCEEEEEEcC
Q psy12365 88 K---RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGK----LIDKIT--LPGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 88 ~---~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~----~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
. ....+.+|...|.+++|+|+++.|++ .|++||.+.. ....+. |.+.|.+++|+|+|++|++ ++.
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~ 166 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA-GCA 166 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE-EES
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE-EeC
Confidence 6 45566789999999999999999888 8999998733 245554 7889999999999999999 999
Q ss_pred CCcEEEeecc---------------------------cCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 154 SSAVNVWTLL---------------------------TYTLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 154 ~~~i~iwd~~---------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
|+.|++||+. ....|.+++|+|+|++|++++.||.|++|+....
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999999983 1156899999999999999999999999998654
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.86 E-value=2.3e-20 Score=214.41 Aligned_cols=180 Identities=12% Similarity=0.185 Sum_probs=160.8
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcC--CCCEEEEEEcCCCeEEEEEcCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDS--EGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~--d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
+|...|.+++|+| ++..|++++.|++|++||. +++.+..+. |...|.+++|+| +|..|++++. |+.|++||+.+
T Consensus 152 ~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~-Dg~v~~wd~~~ 229 (354)
T 2pbi_B 152 MHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC-DKKAMVWDMRS 229 (354)
T ss_dssp ECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET-TSCEEEEETTT
T ss_pred ccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC-CCeEEEEECCC
Confidence 5889999999999 9999999999999999997 678888887 888999999987 5789999998 99999999999
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC-CeEEEEec---CCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG-KLIDKITL---PGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g-~~~~~~~~---~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
++....+.+|...|.+++|+|++..|++ +|++||++. +....+.. ...+.+++|+|+|.++++ ++.|+.|
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-g~~d~~i 308 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA-GYNDYTI 308 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE-EETTSCE
T ss_pred CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE-EECCCcE
Confidence 9988888999999999999999999988 899999874 34444432 246899999999999999 9999999
Q ss_pred EEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy12365 158 NVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYL 193 (1324)
Q Consensus 158 ~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~ 193 (1324)
++||+.+. ..|++++|+|||++|++++.||.|++|+
T Consensus 309 ~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99998622 6899999999999999999999999995
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.86 E-value=9.5e-20 Score=218.07 Aligned_cols=182 Identities=11% Similarity=0.216 Sum_probs=153.5
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-c-----------EEEEEe-CC------------CCEEEEEEcCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-K-----------LIDKIT-LP------------GLCIVMDWDSE 65 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~-----------~~~~~~-~~------------~~i~~i~~~~d 65 (1324)
.|.+.|.+++|+| +|++|++++.||.|+||+... + ....+. |. +.|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4678899999999 999999999999999999743 2 355666 76 78999999999
Q ss_pred C--CEEEEEEcCCCeEEEEEcCCCeEE----------------------------------------EEecCCCCCceEE
Q psy12365 66 G--DLLGIISSNSSAVNVWNTYTKKRT----------------------------------------IVDSGLRDPLTCL 103 (1324)
Q Consensus 66 ~--~~l~~~~~~d~~i~iw~~~~~~~~----------------------------------------~~~~~~~~~v~~~ 103 (1324)
+ ..|++++. |+.|++||+.++... ....+|...|.++
T Consensus 105 ~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 105 KNAAQFLLSTN-DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CSSSEEEEEEC-SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCcceEEEeCC-CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 8 78999988 999999998764331 2236799999999
Q ss_pred EEecCCCEEEE----EEEEEeCC--CCeEEEE--------ecCCcEEEEEEcCCC-CEEEEEEcCCCcEEEeecccC---
Q psy12365 104 VWCKQCSMLQL----SVSIYNKH--GKLIDKI--------TLPGLCIVMDWDSEG-DLLGIISSNSSAVNVWTLLTY--- 165 (1324)
Q Consensus 104 ~~s~~~~~l~~----~i~v~d~~--g~~~~~~--------~~~~~i~~~~~~~~g-~~l~~~~~~~~~i~iwd~~~~--- 165 (1324)
+|+|++++|++ .|++||.. ++....+ .|.+.|.+++|+|+| .++++ ++.|+.|++||+++.
T Consensus 184 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVY-SSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEE-EETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEE-EeCCCeEEEEECcCCccc
Confidence 99999999998 99999987 3333332 377889999999999 89999 999999999998732
Q ss_pred -----------C------------CeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 166 -----------T------------LGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 166 -----------~------------~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
. .|.+++|+|+|++|++++. |.|++|+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 1 7999999999999999998 9999999754
No 58
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.86 E-value=1.5e-20 Score=216.59 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=149.3
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe--CCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTG--RDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~--~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+...+.+++||| ||+++++++ .|++|+|||. +++.+..+.|.+.|.+++|+|||+++++++. +.+.+|+..++
T Consensus 131 ~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~--~~~~~~~~~~~ 207 (365)
T 4h5i_A 131 NADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG--SSLEVISTVTG 207 (365)
T ss_dssp CTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECS--SCEEEEETTTC
T ss_pred CcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccc--eeEEEEEeccC
Confidence 3456688999999 999987655 6899999998 6777777888889999999999999999874 55666666555
Q ss_pred eEE--EEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCeE-----EEE-ecCCcEEEEEEcCCCCEEEEE
Q psy12365 88 KRT--IVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKLI-----DKI-TLPGLCIVMDWDSEGDLLGII 150 (1324)
Q Consensus 88 ~~~--~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~~-----~~~-~~~~~i~~~~~~~~g~~l~~~ 150 (1324)
... ....+|...+.+++|+|+|+.+++ .++.|+...... ..+ .+...|++++|+|||++|++
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las- 286 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL- 286 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE-
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE-
Confidence 443 334568888999999999999887 577888653222 112 26778999999999999999
Q ss_pred EcCCCcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 151 SSNSSAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 151 ~~~~~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++.|++|+|||..+. ..|++++|||||++|++++.|++|+||++..
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999998732 6799999999999999999999999999743
No 59
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.86 E-value=4.3e-20 Score=206.50 Aligned_cols=185 Identities=18% Similarity=0.285 Sum_probs=157.3
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC---cEEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEEE
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG---KLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~---~~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~iw 82 (1324)
..+|.+.|.+++|+| +|++|++++.|++|+|||..+ +.+..+. |.+.|.+++|+|+ |+.|++++. |++|++|
T Consensus 5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-D~~v~iW 82 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-DGKVMIW 82 (297)
T ss_dssp CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-TTEEEEE
T ss_pred ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-CCEEEEE
Confidence 368999999999999 999999999999999999843 5566777 8899999999864 899999998 9999999
Q ss_pred EcCCCe--EEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCCCC----eEEEEecCCcEEEEEEcCC------
Q psy12365 83 NTYTKK--RTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKHGK----LIDKITLPGLCIVMDWDSE------ 143 (1324)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~g~----~~~~~~~~~~i~~~~~~~~------ 143 (1324)
|+.++. ....+.+|...|.+++|+|+ |..|++ .|++||.+.. ......|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 34456789999999999997 888887 9999998632 1222347889999999997
Q ss_pred -------CCEEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q psy12365 144 -------GDLLGIISSNSSAVNVWTLLTY--------------TLGERISWSDDG---QLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 144 -------g~~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~---~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++|++ ++.|+.|++||+++. ..|.+++|+|++ .+|++++.||+|++|+.+.
T Consensus 163 ~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568999 999999999997621 568999999995 8999999999999999765
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-18 Score=202.82 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=129.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeE
Q psy12365 53 LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLI 126 (1324)
Q Consensus 53 ~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~ 126 (1324)
|.+.|.+++|+|+|++|++++. ||.|++||+.+++....+.+|...|.+++|+|+++.|++ .|++||.. ++..
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSK-DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEES-SSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeceEEEEEEcCCCCEEEEEeC-CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 8899999999999999999998 999999999999988888999999999999999999988 89999976 7788
Q ss_pred EEEecCCcEEEEEEcCCCCEEEEEEcCC-----CcEEEeecccC-----------------------CCeeEEEEcCCCC
Q psy12365 127 DKITLPGLCIVMDWDSEGDLLGIISSNS-----SAVNVWTLLTY-----------------------TLGERISWSDDGQ 178 (1324)
Q Consensus 127 ~~~~~~~~i~~~~~~~~g~~l~~~~~~~-----~~i~iwd~~~~-----------------------~~i~~~~~s~~~~ 178 (1324)
..+.+...+.++.|+|+|.++++ ++.+ +.|.+||+... ..+.+++|+|+++
T Consensus 110 ~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 110 ATWKSPVPVKRVEFSPCGNYFLA-ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEEECSSCEEEEEECTTSSEEEE-EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EEeecCCCeEEEEEccCCCEEEE-ecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 88889999999999999999999 8888 99999998732 1788899999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q psy12365 179 LLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 179 ~l~~~~~dg~i~~~~~~~ 196 (1324)
+|++++.||.|.+|++..
T Consensus 189 ~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCEEEEEECCC
Confidence 999999999999998643
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.86 E-value=7.8e-20 Score=206.72 Aligned_cols=183 Identities=11% Similarity=0.198 Sum_probs=163.0
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCC------CCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSE------GDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d------~~~l~~~~~~d~~i~iw 82 (1324)
.+|...|.+++|+| ++++|++++.|++|++||..++.+..+. |.+.+.++.|+|+ +..+++++. |+.|++|
T Consensus 104 ~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-d~~i~~w 181 (319)
T 3frx_A 104 VGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181 (319)
T ss_dssp ECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEET-TSCEEEE
T ss_pred ccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC-CCEEEEE
Confidence 57999999999999 9999999999999999999988887777 8889999999985 448889888 9999999
Q ss_pred EcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCc
Q psy12365 83 NTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSA 156 (1324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~ 156 (1324)
|+.+.+....+.+|...|.+++|+|+|++|++ .|++||.. ++....+.....|.+++|+|+|.++++ ++. +.
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~-~~~-~~ 259 (319)
T 3frx_A 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA-ATA-TG 259 (319)
T ss_dssp ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEE-EET-TE
T ss_pred ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEE-EcC-CC
Confidence 99999888888999999999999999999988 89999986 666777778889999999999999988 665 45
Q ss_pred EEEeecccC------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 157 VNVWTLLTY------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 157 i~iwd~~~~------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++|+++.. ..+.+++|+|||++|++|+.||.|++|++..
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 899987621 3578999999999999999999999999743
No 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=8.2e-20 Score=227.82 Aligned_cols=334 Identities=12% Similarity=0.025 Sum_probs=200.2
Q ss_pred HHHHHHHhhcHHHHHHHHHhh----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchh-HHHHHHHhhh------cccch
Q psy12365 624 SLHKVLKLLNWKEAWNICAVL----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAG-MVWCLESLVE------EEEDT 692 (1324)
Q Consensus 624 ~~~~~l~~~~~~~A~~~~~~~----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~-~~~~l~~~~~------~~~~~ 692 (1324)
....+...|++++|..+++.. +++..|..++..+.+.|++++|+..|.+..... .......... .....
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHH
Confidence 345577889999999999876 678999999999999999999999998532211 0000000000 01345
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCC--hH--HHHHHHHH----HhhHHHHH--HH-HHh---cCCCCchHHHHHHHHHH
Q psy12365 693 SILCGHVAALLGNHDTAQQRYLTSDI--PT--MALTLRRD----LRQWREAL--AL-ATS---LGSNQTPIISCDYAQQL 758 (1324)
Q Consensus 693 ~~~~a~~~~~~g~~~~A~~~~~~~~~--~~--~a~~~~~~----~~~~~~Al--~~-~~~---~~~~~~~~~~~~~~~~~ 758 (1324)
+..+|.++...|++++|++.|.++.+ |+ .+...... .+..+.+. .+ ... ..+.....++..++..|
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 78999999999999999999987632 11 11111100 00000000 00 000 00111112233335556
Q ss_pred HHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC-----ChHHHHHHHHHHHHccC
Q psy12365 759 EMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN-----SSVLKNECADILQQFNK 833 (1324)
Q Consensus 759 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~g~ 833 (1324)
...|++++|++.|++++...+ +...+..++.+|.+.|++++|+++++++. +..++..++..+...|+
T Consensus 283 ~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGLEK--------SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTGGG--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred cCcchHHHHHHHHHHhhcCCc--------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 666777777777777766522 34455567777777777777777776652 15566677777777777
Q ss_pred HHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 834 LNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 834 ~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+++|..+|+++.. +..++.+|.+.|++++|.++++++. +...+..+|..+...|++++|++.|.++.
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776532 4455677777777777777776543 45566677777777777777777776632
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccC
Q psy12365 901 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE 980 (1324)
Q Consensus 901 ~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l 980 (1324)
+. . ..+..+...+|..|.+.|++++|+++|.++ +
T Consensus 435 ~~------------~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------~ 468 (597)
T 2xpi_A 435 RL------------F----------QGTHLPYLFLGMQHMQLGNILLANEYLQSS------------------------Y 468 (597)
T ss_dssp HT------------T----------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------H
T ss_pred Hh------------C----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------H
Confidence 10 0 023334455666666666666666666554 1
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 981 E-DEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 981 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
. .+.++..+..+|..|...|++++|..+|.+
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 234556666666666666665555555544
No 63
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.8e-20 Score=220.60 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=138.3
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCcEEEEE-e-CCCCEEEEEEcC-CCCEEEEEEcCCCeEEEEEcCC---Ce---EE
Q psy12365 20 CWQRRTGELLATTGRDSSVSIYNKHGKLIDKI-T-LPGLCIVMDWDS-EGDLLGIISSNSSAVNVWNTYT---KK---RT 90 (1324)
Q Consensus 20 ~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~-~-~~~~i~~i~~~~-d~~~l~~~~~~d~~i~iw~~~~---~~---~~ 90 (1324)
.|+| +++.+++++ .|+.+|+++..+ . |.+.|.+++|+| ++++|++++. ||.|++||+.+ +. ..
T Consensus 34 ~f~~-~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGP-IQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSD-QGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCC-CCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEET-TSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCC-ccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecC-CceEEEeECcccccCccccee
Confidence 4677 777776554 499999999999 5 789999999999 9999999998 99999999865 32 12
Q ss_pred EEecCCCCCceEEEEecCCCEEEE-----EEEEEeC----CCCeEEEEe-------------cCCcEEEEE--EcCCCCE
Q psy12365 91 IVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNK----HGKLIDKIT-------------LPGLCIVMD--WDSEGDL 146 (1324)
Q Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~----~g~~~~~~~-------------~~~~i~~~~--~~~~g~~ 146 (1324)
..+ +|...|.+++|+|++..|++ .|++||. .|+...... +...+.++. ++|++.+
T Consensus 106 ~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 106 LTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred eec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 222 58999999999999999988 8999997 354443322 345666766 6688999
Q ss_pred EEEEEcCCCcEEEeecccC------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 147 LGIISSNSSAVNVWTLLTY------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 147 l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
+++ ++.|+.|++||+++. ..|++++|+|++.+|++++.||.|++|+++...
T Consensus 185 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 185 LVA-LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp EEE-EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEE-EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence 999 999999999998722 579999999999999999999999999987643
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=2.5e-19 Score=205.66 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=155.8
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCc----EEEEEeCCCCEEEEEEcCCCC-EEEEEEcCCCeEEEE
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGK----LIDKITLPGLCIVMDWDSEGD-LLGIISSNSSAVNVW 82 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~----~~~~~~~~~~i~~i~~~~d~~-~l~~~~~~d~~i~iw 82 (1324)
..+|.+.|.+++|+| +|++|++++.||.|++|+. .+. ......|.+.|.+++|+|+++ .|++++. ||.|++|
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~w 84 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-QGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-TSCEEEE
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-CCeEEEE
Confidence 358999999999999 9999999999999999997 344 333334889999999999999 9999998 9999999
Q ss_pred Ec-CCCeEEEEecC--CCCCceEEEEecCCCEEEE-----EEEEEeCC----------CCeEEEEecCCcEEEEEEcCCC
Q psy12365 83 NT-YTKKRTIVDSG--LRDPLTCLVWCKQCSMLQL-----SVSIYNKH----------GKLIDKITLPGLCIVMDWDSEG 144 (1324)
Q Consensus 83 ~~-~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-----~i~v~d~~----------g~~~~~~~~~~~i~~~~~~~~g 144 (1324)
|+ .+++. ..+.+ |...|.+++|+| +..+++ .|++||.. ++....+.+.+.+.+++|+|++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 99 87766 45678 999999999999 888887 89999965 3344455588899999999988
Q ss_pred CEEEEEEcCCCcEEEeeccc-C------------CCeeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q psy12365 145 DLLGIISSNSSAVNVWTLLT-Y------------TLGERISWSD-DGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 145 ~~l~~~~~~~~~i~iwd~~~-~------------~~i~~~~~s~-~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++ ++.++.|.+||+++ . ..+.++.|+| +++++++++.||.+++|+.+.
T Consensus 163 --l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 163 --LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp --EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred --EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 777 89999999999875 2 5688999999 999999999999999998754
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.86 E-value=4.6e-19 Score=208.08 Aligned_cols=179 Identities=14% Similarity=0.281 Sum_probs=146.0
Q ss_pred CCCCC--eeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 11 PHGPG--DVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 11 ~h~~~--i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
+|.+. +.++.|++ ..+++++.|+.|++||. +|+....+. |.+.|.+++|+|+|++|++++. ||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG-NGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET-TSCEEEEETT
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC-CCeEEEEECc
Confidence 45554 44455554 56778889999999998 566666555 5789999999999999999998 9999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC--CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH--GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
+++....+.+|...|.+++|+ +..+++ .|.+||.+ +.....+. |.+.|.+++|+|+|.++++ ++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS-GGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCE
T ss_pred CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE-EeCCCeE
Confidence 998888888999999999995 456766 99999987 44444443 8889999999999999999 9999999
Q ss_pred EEeecccC----------CCeeEEEEcCCCC-EEEEEe--CCCcEEEEEcCC
Q psy12365 158 NVWTLLTY----------TLGERISWSDDGQ-LLAVTT--SGGSVKIYLSKL 196 (1324)
Q Consensus 158 ~iwd~~~~----------~~i~~~~~s~~~~-~l~~~~--~dg~i~~~~~~~ 196 (1324)
++||+.+. ..|.+++|+|++. ++++++ .||.|++|++..
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 99998732 6789999999775 455544 699999998753
No 66
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.86 E-value=6.2e-20 Score=210.17 Aligned_cols=185 Identities=18% Similarity=0.339 Sum_probs=159.4
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC---cEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG---KLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~---~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
..+|...|.+++|+| +|++|++++.|++|++|+... +.+..+. |.+.|.+++|+|+|++|++++. |+.|++||+
T Consensus 57 ~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-D~~v~iwd~ 134 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-DKSVWVWEV 134 (345)
T ss_dssp CSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEEE
T ss_pred ccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-CCeEEEEEC
Confidence 368999999999999 999999999999999999744 2445565 8899999999999999999998 999999998
Q ss_pred CCC---eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCe---EEEEe-cCCcEEEEEEcCCCCEEEEEEc
Q psy12365 85 YTK---KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKL---IDKIT-LPGLCIVMDWDSEGDLLGIISS 152 (1324)
Q Consensus 85 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~---~~~~~-~~~~i~~~~~~~~g~~l~~~~~ 152 (1324)
.++ .....+.+|...|.+++|+|++.+|++ .|++||..... ...+. |.+.|.+++|+|+|++|++ ++
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s-~s 213 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS-CS 213 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE-EE
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE-Ee
Confidence 765 345567889999999999999999988 89999976432 22332 7889999999999999999 99
Q ss_pred CCCcEEEeecc--------------------------cCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 153 NSSAVNVWTLL--------------------------TYTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 153 ~~~~i~iwd~~--------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.|++|++|+.. ....|.+++|+|++..|++++.|+.|++|+...
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 99999999863 114688999999999999999999999999754
No 67
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=3.1e-19 Score=208.88 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=195.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCC--h------HHHHH
Q psy12365 653 FAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDI--P------TMALT 724 (1324)
Q Consensus 653 l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~--~------~~a~~ 724 (1324)
+|..+.+.|++++|+..|.++. ..... ....+..+|.++...|++++|...+.++.+ | .....
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~--------~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~ 75 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW--------RQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH--------HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--------HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 5778899999999999987542 22222 345668889999999999999998865321 1 12344
Q ss_pred HHHHHhhHHHHHHHHHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhc
Q psy12365 725 LRRDLRQWREALALATSL--GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRV 802 (1324)
Q Consensus 725 ~~~~~~~~~~Al~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 802 (1324)
.|...|++++|+..+++. ..++....+..+|..+...|++++|++.|++++..+|+ ....+..++.++...
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-------LYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-------CTHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHc
Confidence 566677777777766652 23444556677777777777777777777777777765 344455567777777
Q ss_pred CCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhc
Q psy12365 803 GDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH 869 (1324)
Q Consensus 803 g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~ 869 (1324)
|++++|++.++++ ++ ..++..+|..+...|++++|+..|+++.. +..++.++...|++++|+..+++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776665 22 56677777777777777777777777643 44556666777777777766655
Q ss_pred cC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCC
Q psy12365 870 IK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD 944 (1324)
Q Consensus 870 ~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~ 944 (1324)
.. ++.++..+|.++...|++++|++.|.++.+ + .+...++...+|..+.+.|+
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~----------------~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE------L----------------QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------T----------------CSSCHHHHHHHHHHHHHHSC
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------h----------------CCCCHHHHHHHHHHHHHcCC
Confidence 43 455666677777777777777777766321 0 11334556777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 945 FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 945 ~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+++|++.|.++ +. .|.++..+..+|..+...|++.+|..+|.+
T Consensus 287 ~~~A~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 287 VAEAEDCYNTA------------------------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777665 11 345667777777666555555555544443
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.85 E-value=2.2e-19 Score=209.73 Aligned_cols=181 Identities=17% Similarity=0.260 Sum_probs=157.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
...|.+++|+| +|++|++++.|+.|++||. +++.+..+. |.+.|.+++|+|+++.|++++. |++|++||+.+++..
T Consensus 123 ~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 123 DLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-DRTVRIWDLRTGQCS 200 (393)
T ss_dssp CCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEE
T ss_pred ceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-CCcEEEEECCCCeeE
Confidence 34599999999 9999999999999999998 556666777 8899999999999999999998 999999999998877
Q ss_pred EEecCCCCCceEEEEec-CCCEEEE-----EEEEEeCC-CCeEEEE--------ecCCcEEEEEEcCCCCEEEEEEcCCC
Q psy12365 91 IVDSGLRDPLTCLVWCK-QCSMLQL-----SVSIYNKH-GKLIDKI--------TLPGLCIVMDWDSEGDLLGIISSNSS 155 (1324)
Q Consensus 91 ~~~~~~~~~v~~~~~s~-~~~~l~~-----~i~v~d~~-g~~~~~~--------~~~~~i~~~~~~~~g~~l~~~~~~~~ 155 (1324)
..+. +.+.+.+++|+| ++.+|++ .|++||.. +.....+ .|.+.|.+++|+|+|.+|++ ++.|+
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s-~s~d~ 278 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS-GSLDR 278 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE-EETTS
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE-EeCCC
Confidence 6654 667799999999 8888888 89999976 5555554 26788999999999999999 99999
Q ss_pred cEEEeecccC----------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 156 AVNVWTLLTY----------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 156 ~i~iwd~~~~----------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
.|++||+.+. ..|.+++|+|++.+|++++.||.|++|+....
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999998621 45889999999999999999999999998654
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.85 E-value=1.5e-18 Score=205.09 Aligned_cols=175 Identities=20% Similarity=0.325 Sum_probs=143.4
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 15 GDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
.+..++||+ + +.|++|. |++|+|||. +|+....+. |.+.|++++|+|||++|++++. ||.|++||+.+++..
T Consensus 107 y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~-Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEE
T ss_pred cceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC-CCeEEEEEcCCCcEE
Confidence 366799997 5 4777665 899999997 677777666 5567999999999999999998 999999999999999
Q ss_pred EEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC--CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 91 IVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH--GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
..+.+|...+.+++|+ +..+++ .+.+||.. ......+. |...+..+.|+|+|.++++ ++.|+.+.+|+.
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s-~~~D~~v~i~~~ 259 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS-GGNDNLVNVWPS 259 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEES
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeee-eeccccceEEee
Confidence 8999999999988875 467776 89999976 33334433 7889999999999999999 999999999998
Q ss_pred ccC--------------CCeeEEEEcCCCC-EEEEE--eCCCcEEEEEcCC
Q psy12365 163 LTY--------------TLGERISWSDDGQ-LLAVT--TSGGSVKIYLSKL 196 (1324)
Q Consensus 163 ~~~--------------~~i~~~~~s~~~~-~l~~~--~~dg~i~~~~~~~ 196 (1324)
.+. ..|..+.|+|++. +++++ +.||.|++|++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 621 5788899998654 45543 4689999998754
No 70
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.85 E-value=3.3e-20 Score=213.21 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=157.2
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCC-EEEEEEcCCCeEEEEEcC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGD-LLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~-~l~~~~~~d~~i~iw~~~ 85 (1324)
..+|.+.|.+++|+| +|++|++++.|+.|++||. +++.+..+. |.+.|.+++|+|++. .+++++. |+.|++||+.
T Consensus 135 ~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~-dg~v~~wd~~ 212 (357)
T 4g56_B 135 KYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-DGRILLWDTR 212 (357)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET-TSCEEECCTT
T ss_pred cCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc-CCceEEEECC
Confidence 347999999999999 9999999999999999998 567777777 889999999999986 6777777 9999999998
Q ss_pred CCeEEEEe--cCCCCCceEEEEecCC-CEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCC-CEEEEEEcCC
Q psy12365 86 TKKRTIVD--SGLRDPLTCLVWCKQC-SMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEG-DLLGIISSNS 154 (1324)
Q Consensus 86 ~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g-~~l~~~~~~~ 154 (1324)
+++..... ..+...+.+++|+|++ .+|++ .|++||.. ++....+. +.+.|++++|+|++ ++|++ ++.|
T Consensus 213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las-gs~D 291 (357)
T 4g56_B 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS-ISED 291 (357)
T ss_dssp SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE-EETT
T ss_pred CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE-EeCC
Confidence 87654433 3467789999999985 56666 79999976 55555555 77899999999987 57888 9999
Q ss_pred CcEEEeecccC---------CCeeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q psy12365 155 SAVNVWTLLTY---------TLGERISWSD-DGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 155 ~~i~iwd~~~~---------~~i~~~~~s~-~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++|+|||.++. ..|++++|+| |+.+|++++.||.|++|++..
T Consensus 292 ~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999833 6799999998 899999999999999999754
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.5e-20 Score=220.83 Aligned_cols=183 Identities=12% Similarity=0.284 Sum_probs=155.3
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-----cEEEEEe-CCCCEEEEEEcCC-CCEEEEEEcCCCeEEEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-----KLIDKIT-LPGLCIVMDWDSE-GDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-----~~~~~~~-~~~~i~~i~~~~d-~~~l~~~~~~d~~i~iw~ 83 (1324)
.|...|.+++|+| ++++|++++.||.|++|+... +....+. |.+.|.+++|+|+ +.+|++++. |+.|++||
T Consensus 65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd 142 (416)
T 2pm9_A 65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-NGEIFIWD 142 (416)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-SSCEEBCB
T ss_pred ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-CCeEEEEE
Confidence 5888999999999 999999999999999999854 4666666 8899999999998 888999887 99999999
Q ss_pred cCCCe------EEE---EecCCCCCceEEEEecC-CCEEEE-----EEEEEeCC-CCeEEEEec-------CCcEEEEEE
Q psy12365 84 TYTKK------RTI---VDSGLRDPLTCLVWCKQ-CSMLQL-----SVSIYNKH-GKLIDKITL-------PGLCIVMDW 140 (1324)
Q Consensus 84 ~~~~~------~~~---~~~~~~~~v~~~~~s~~-~~~l~~-----~i~v~d~~-g~~~~~~~~-------~~~i~~~~~ 140 (1324)
+.++. ... ...+|...+.+++|+|+ +..+++ .|++||.. ++....+.. ...+.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 98765 221 23568899999999999 677777 89999987 555566653 678999999
Q ss_pred cCCC-CEEEEEEcCCC---cEEEeecccC------------CCeeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q psy12365 141 DSEG-DLLGIISSNSS---AVNVWTLLTY------------TLGERISWSD-DGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 141 ~~~g-~~l~~~~~~~~---~i~iwd~~~~------------~~i~~~~~s~-~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+|++ .++++ ++.++ .|++||+++. ..|.+++|+| ++.+|++++.||.|++|++..
T Consensus 223 ~~~~~~~l~~-~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 223 HPKNSTRVAT-ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CSSCTTEEEE-EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred CCCCCCEEEE-EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 9998 57888 88888 9999998731 4688999999 999999999999999999754
No 72
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.85 E-value=2.4e-19 Score=205.34 Aligned_cols=184 Identities=10% Similarity=0.177 Sum_probs=157.8
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+|...|.+++|+| ++.++++++.|++|++||. +++.+..+. |.+.|.+++|+|+++.|++++. |+.|++||+.+
T Consensus 72 l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-d~~i~~wd~~~ 149 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNILG 149 (343)
T ss_dssp ECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-TSCEEEEESSS
T ss_pred hccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-CCEEEEEeccC
Confidence 358999999999999 9999999999999999997 677777777 8899999999999999999998 99999999985
Q ss_pred CeEEEEe--cCCCCCceEEEEecCC----------CEEEE-----EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEE
Q psy12365 87 KKRTIVD--SGLRDPLTCLVWCKQC----------SMLQL-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLG 148 (1324)
Q Consensus 87 ~~~~~~~--~~~~~~v~~~~~s~~~----------~~l~~-----~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~ 148 (1324)
....... .+|...|.++.|+|++ .++++ .|++||..+.....+. |.+.|.+++|+|+|++|+
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEE
Confidence 4433222 2688899999999987 67776 9999997766655554 788999999999999999
Q ss_pred EEEcCCCcEEEeecc-c---------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 149 IISSNSSAVNVWTLL-T---------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~-~---------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+ ++.|+.|++||+. . ...|.+++|+|++++++++ .|+.+++|++..
T Consensus 230 s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~ 285 (343)
T 2xzm_R 230 T-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMT 285 (343)
T ss_dssp E-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSS
T ss_pred E-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCC
Confidence 9 9999999999984 1 1568999999999988755 577899999764
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=2.2e-20 Score=210.89 Aligned_cols=193 Identities=18% Similarity=0.291 Sum_probs=151.6
Q ss_pred CccceecccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-Cc--EEEEEe-CCCCEEEEEEcC--CCCEEEEEEc
Q psy12365 1 MDKLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GK--LIDKIT-LPGLCIVMDWDS--EGDLLGIISS 74 (1324)
Q Consensus 1 ~~~~~~~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~--~~~~~~-~~~~i~~i~~~~--d~~~l~~~~~ 74 (1324)
|.+++.....+|.+.|.+++|+| +|++|++++.|++|++||.. +. .+..+. |.+.|.+++|+| +++.|++++.
T Consensus 1 ~~~~~~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 1 MVSVINTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp -------------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred CcceeeeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 66777777789999999999999 99999999999999999984 43 345566 889999999986 4899999998
Q ss_pred CCCeEEEEEcCCC--eEEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCCCCe-EEE---E-ecCCcEEEEEE
Q psy12365 75 NSSAVNVWNTYTK--KRTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKHGKL-IDK---I-TLPGLCIVMDW 140 (1324)
Q Consensus 75 ~d~~i~iw~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~g~~-~~~---~-~~~~~i~~~~~ 140 (1324)
|++|++||+.++ .....+.+|...|.+++|+|+ +.+|++ .|++||..+.. ... + .|...+.++.|
T Consensus 80 -D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 80 -DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp -TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred -CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 999999999876 345566789999999999998 778887 89999987431 111 1 26678999999
Q ss_pred cCC-----------------CCEEEEEEcCCCcEEEeecccC-------------CCeeEEEEcCCC----CEEEEEeCC
Q psy12365 141 DSE-----------------GDLLGIISSNSSAVNVWTLLTY-------------TLGERISWSDDG----QLLAVTTSG 186 (1324)
Q Consensus 141 ~~~-----------------g~~l~~~~~~~~~i~iwd~~~~-------------~~i~~~~~s~~~----~~l~~~~~d 186 (1324)
+|+ +.+|++ ++.|+.|++||.+.. ..|.+++|+|++ .+|++++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 998 468898 999999999998611 569999999987 899999999
Q ss_pred CcEEEEEcCC
Q psy12365 187 GSVKIYLSKL 196 (1324)
Q Consensus 187 g~i~~~~~~~ 196 (1324)
|+|++|+...
T Consensus 238 ~~v~iw~~~~ 247 (316)
T 3bg1_A 238 GRVFIWTCDD 247 (316)
T ss_dssp CEEEEEECSS
T ss_pred CeEEEEEccC
Confidence 9999999765
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.3e-19 Score=203.95 Aligned_cols=182 Identities=23% Similarity=0.338 Sum_probs=152.4
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC--------CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH--------GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~--------~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
+|...|.+++|+| +|++|++++.|++|++|+.. ++....+. |.+.|.+++|+|+|++|++++. |++|++
T Consensus 56 ~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-D~~v~i 133 (330)
T 2hes_X 56 AHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-DKSVWI 133 (330)
T ss_dssp CCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-TSCEEE
T ss_pred CccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-CCEEEE
Confidence 4999999999999 99999999999999999973 23455565 8899999999999999999998 999999
Q ss_pred EEcCC-C---eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC---CeEEEEe-cCCcEEEEEEcCC--CCE
Q psy12365 82 WNTYT-K---KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG---KLIDKIT-LPGLCIVMDWDSE--GDL 146 (1324)
Q Consensus 82 w~~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g---~~~~~~~-~~~~i~~~~~~~~--g~~ 146 (1324)
||+.. + +....+.+|...|.+++|+|++.+|++ +|++||... +....+. |.+.|.+++|+|+ +..
T Consensus 134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 99842 2 456677899999999999999999988 899999653 3344443 7889999999998 678
Q ss_pred EEEEEcCCCcEEEeeccc-------------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 147 LGIISSNSSAVNVWTLLT-------------------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 147 l~~~~~~~~~i~iwd~~~-------------------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++ ++.|++|++||+.. ...|.+++|++++ +|++++.||.|++|+...
T Consensus 214 l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 214 LCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 999 99999999998741 1568999999765 889999999999999643
No 75
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.6e-21 Score=224.57 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=138.6
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
-++...+|.+++||| ||+++|+++.|++|+ | ++....+. |++.|.+++|+||| . ++.+.+|+.+..
T Consensus 11 ~~~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-------~-~~~~~~~~~~~~ 77 (588)
T 2j04_A 11 RKEFEDWKNNLTWAR-DGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-------F-ENKLDFELAQQN 77 (588)
T ss_dssp SCCCSSSSCCEEECT-TSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-------C-CCTTTTSCCCSS
T ss_pred HhHhhccEEEEEECC-CCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-------C-cceEEEEeCCCc
Confidence 356778999999999 999999999999999 5 33333334 88899999999999 4 777777776544
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEecCC-----cEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKITLPG-----LCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~~~~-----~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
... ..+|.+.|.+++|||+|..|++ .+++||..+ ....+.+.. .+.+++|||||++|++ ++.||+|
T Consensus 78 ~~~--~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAs-gs~DGtV 153 (588)
T 2j04_A 78 GLL--NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVV-GNEDGEL 153 (588)
T ss_dssp CSS--TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEE-EETTSEE
T ss_pred eEe--ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEE-EcCCCEE
Confidence 322 1156888999999999999998 899999766 444444443 4999999999999999 9999999
Q ss_pred EEeecccC---------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 158 NVWTLLTY---------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 158 ~iwd~~~~---------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+|||.... ..|.+++|+||| +++++.|+.+++|+....
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 99997721 379999999999 888999999999997653
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.84 E-value=4.4e-18 Score=192.91 Aligned_cols=173 Identities=18% Similarity=0.282 Sum_probs=136.0
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
..+++||+ ++ +||+| .|++|+|||. +|+.+..+. |...|.+++|+|+|++|++++. |+.|++||+++++...
T Consensus 28 ~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~-Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEE
T ss_pred ceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC-CCcEEEeecCCceeEE
Confidence 46799999 76 77765 5899999997 678887776 5678999999999999999998 9999999999999988
Q ss_pred EecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC--CeEEEE-ecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc
Q psy12365 92 VDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG--KLIDKI-TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL 163 (1324)
Q Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g--~~~~~~-~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~ 163 (1324)
.+.+|...+.++. +++..+++ .+.+|+... .....+ .|...+..+.|+++|+++++ ++.|+.|++||..
T Consensus 104 ~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 104 NMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS-GGNDNLVNVWPSA 180 (318)
T ss_dssp EEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEESS
T ss_pred EecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE-EecCcceeEEECC
Confidence 8899988776654 45567776 788888652 333333 37888999999999999999 9999999999987
Q ss_pred cC--------------CCeeEEEEcCCCCEE---EEEeCCCcEEEEEcC
Q psy12365 164 TY--------------TLGERISWSDDGQLL---AVTTSGGSVKIYLSK 195 (1324)
Q Consensus 164 ~~--------------~~i~~~~~s~~~~~l---~~~~~dg~i~~~~~~ 195 (1324)
+. ..|..+.|+|++..+ ++++.++.|++|+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 32 456777777765432 234456667777643
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.84 E-value=3.6e-19 Score=210.98 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEE--
Q psy12365 57 CIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKI-- 129 (1324)
Q Consensus 57 i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~-- 129 (1324)
+++++|+|+|+++++++. |+.|++||..+++....+..+ ..+....|+|+++.|++ .|++||.........
T Consensus 59 ~~~~~~s~~g~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARL-DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEE-TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeeecCCeEEEEEc-CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 457899999999999998 999999999876654444444 44555678999999988 899999874444333
Q ss_pred ecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 130 TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 130 ~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
.|.+.|.+++|+|+|.+|++ ++.|+.|++||+.+. ..|.++.|+|++++|++++.||.|++|+++...
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALIS-SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCEEEE-EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 48899999999999999999 999999999998732 679999999999999999999999999987643
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.84 E-value=3.3e-19 Score=205.30 Aligned_cols=185 Identities=15% Similarity=0.277 Sum_probs=153.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-----cEEEEEe-CCCCEEEEEEcC--CCCEEEEEEcCCCeEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-----KLIDKIT-LPGLCIVMDWDS--EGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-----~~~~~~~-~~~~i~~i~~~~--d~~~l~~~~~~d~~i~i 81 (1324)
.+|.+.|.+++|+| +|++|++++.||.|++||... +....+. |.+.|.+++|+| |+.+|++++. |+.|++
T Consensus 8 ~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~-dg~v~v 85 (351)
T 3f3f_A 8 SGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY-DKTVKL 85 (351)
T ss_dssp CCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET-TSCEEE
T ss_pred cccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC-CCeEEE
Confidence 58999999999999 999999999999999999843 2455555 889999999999 6999999998 999999
Q ss_pred EEcCCC---------eEEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCC-CCe-------------------
Q psy12365 82 WNTYTK---------KRTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKH-GKL------------------- 125 (1324)
Q Consensus 82 w~~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~-g~~------------------- 125 (1324)
||+.++ +....+.+|.+.|.+++|+|+ +..+++ .|++||.. ++.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999876 556677889999999999999 998888 89999964 211
Q ss_pred -----------------------------------------EEEE-ecCCcEEEEEEcCCC----CEEEEEEcCCCcEEE
Q psy12365 126 -----------------------------------------IDKI-TLPGLCIVMDWDSEG----DLLGIISSNSSAVNV 159 (1324)
Q Consensus 126 -----------------------------------------~~~~-~~~~~i~~~~~~~~g----~~l~~~~~~~~~i~i 159 (1324)
...+ .|.+.|.+++|+|+| .+|++ ++.|+.|++
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s-~~~dg~i~i 244 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT-GCKDGRIRI 244 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE-EETTSCEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE-EcCCCeEEE
Confidence 1111 156788899999988 67888 888899999
Q ss_pred eeccc--------------------------------------------------------CCCeeEEEEcCCCCEEEEE
Q psy12365 160 WTLLT--------------------------------------------------------YTLGERISWSDDGQLLAVT 183 (1324)
Q Consensus 160 wd~~~--------------------------------------------------------~~~i~~~~~s~~~~~l~~~ 183 (1324)
||+.. ...|+++.|+|+|++|+++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98763 1468888999999999999
Q ss_pred eCCCcEEEEEcCCC
Q psy12365 184 TSGGSVKIYLSKLP 197 (1324)
Q Consensus 184 ~~dg~i~~~~~~~~ 197 (1324)
+.||.|++|++...
T Consensus 325 ~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 325 GDDGKVRLWKATYS 338 (351)
T ss_dssp ETTSCEEEEEECTT
T ss_pred cCCCcEEEEecCcC
Confidence 99999999987654
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.83 E-value=2.7e-19 Score=199.96 Aligned_cols=186 Identities=19% Similarity=0.275 Sum_probs=154.5
Q ss_pred CCCCCCeeEEEEec-CCCCEEEEEeCCCcEEEEECCC---cEEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQR-RTGELLATTGRDSSVSIYNKHG---KLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp-~~g~~l~~~~~~~~v~v~~~~~---~~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~iw 82 (1324)
.+|.+.|.+++|+| .+|++|++++.|++|++||... ..+..+. |...|.+++|+|+ |..|++++. |+.|++|
T Consensus 50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-d~~v~~w 128 (297)
T 2pm7_B 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-DGKVSVV 128 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-TSEEEEE
T ss_pred ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-CCcEEEE
Confidence 58999999999986 1389999999999999999843 2344555 7889999999998 889999998 9999999
Q ss_pred EcCCCe--EEEEecCCCCCceEEEEecC-------------CCEEEE-----EEEEEeCC-CC----eEEEEe-cCCcEE
Q psy12365 83 NTYTKK--RTIVDSGLRDPLTCLVWCKQ-------------CSMLQL-----SVSIYNKH-GK----LIDKIT-LPGLCI 136 (1324)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~s~~-------------~~~l~~-----~i~v~d~~-g~----~~~~~~-~~~~i~ 136 (1324)
|+.++. ....+.+|...|.+++|+|+ ++.|++ +|++||.+ ++ ....+. |.+.|.
T Consensus 129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp EBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred EecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 997652 13456789999999999997 467777 89999976 33 233343 788999
Q ss_pred EEEEcCCC---CEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 137 VMDWDSEG---DLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 137 ~~~~~~~g---~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+++|+|++ .+|++ ++.|++|+|||.++. ..|.+++|+|+|++|++++.||.|++|+....
T Consensus 209 ~v~~sp~~~~~~~las-~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMAS-VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEEECCCCSSSEEEEE-EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred EEEECCCCCCceEEEE-EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 99999995 78999 999999999997621 46889999999999999999999999997643
No 80
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.83 E-value=9.2e-19 Score=197.76 Aligned_cols=187 Identities=14% Similarity=0.254 Sum_probs=162.0
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|..+|.+++|+| +|++|++++.|+.|++||. +++.+..+. |.+.|.++.|+|+++.|++++. |+.|++||+.++
T Consensus 62 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~ 139 (312)
T 4ery_A 62 SGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTG 139 (312)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTC
T ss_pred ccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Confidence 57999999999999 9999999999999999998 677777777 8889999999999999999998 999999999999
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEE
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNV 159 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~i 159 (1324)
+....+..|...+.++.|+|+++.+++ .|++||.. ++....+. +...+..++|+|+|+++++ ++.|+.|++
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i 218 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKL 218 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE-EETTTEEEE
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEE
Confidence 888888899999999999999999888 89999986 55555553 4567999999999999999 999999999
Q ss_pred eecccC----------C---CeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q psy12365 160 WTLLTY----------T---LGERISWSDDGQLLAVTTSGGSVKIYLSKLPKL 199 (1324)
Q Consensus 160 wd~~~~----------~---~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~ 199 (1324)
||+.+. . .+......+++.+|++++.||.|++|++....+
T Consensus 219 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 999732 1 122223346889999999999999999876543
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.83 E-value=8.4e-19 Score=201.95 Aligned_cols=171 Identities=9% Similarity=0.073 Sum_probs=123.3
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCC-------cEEEEECCCc---------EEEEEe---CCCCEEEEEEcCCCCEEEEEE
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDS-------SVSIYNKHGK---------LIDKIT---LPGLCIVMDWDSEGDLLGIIS 73 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~-------~v~v~~~~~~---------~~~~~~---~~~~i~~i~~~~d~~~l~~~~ 73 (1324)
+-+|.+++|+| ||++|++||.+. .|++|+.+.. ....+. ++..+.+++|+ ++.++++.
T Consensus 14 g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 45799999999 999999987543 4999996321 122222 45667777654 56676654
Q ss_pred c----------CCCeEEEEEcCCCe--EE--EEe-----cCCCCCceEEEEecCCCEEEE-------EEEEEeCC-CCeE
Q psy12365 74 S----------NSSAVNVWNTYTKK--RT--IVD-----SGLRDPLTCLVWCKQCSMLQL-------SVSIYNKH-GKLI 126 (1324)
Q Consensus 74 ~----------~d~~i~iw~~~~~~--~~--~~~-----~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~ 126 (1324)
. .|+.+++|++.+.. .. ... ..+...+..++|||||+++++ +|++||.. ++..
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 2 26789999975432 11 111 124456889999999999865 79999976 6777
Q ss_pred EEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCCC
Q psy12365 127 DKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSGG 187 (1324)
Q Consensus 127 ~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg 187 (1324)
..+.+.+.|.+++|+|||+++++ ++.++.+.+|..... ..|.++.|+|+|+++++++.++
T Consensus 171 ~~~~~~~~V~~v~fspdg~~l~s-~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 171 FEIETRGEVKDLHFSTDGKVVAY-ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp EEEECSSCCCEEEECTTSSEEEE-ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred EEeCCCCceEEEEEccCCceEEe-ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 78889999999999999999999 776554444443311 4578899999999998887665
No 82
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.83 E-value=2.5e-19 Score=208.28 Aligned_cols=185 Identities=14% Similarity=0.179 Sum_probs=158.0
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe------CCCCEEEEEEcC-CCCEEEEEEcCCCeEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT------LPGLCIVMDWDS-EGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~------~~~~i~~i~~~~-d~~~l~~~~~~d~~i~i 81 (1324)
.+|.+.|.++.|+|.++..|++++.|++|++||. +++.+..+. |...|.++.|+| ++..|++++. |+.|++
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-D~~v~~ 232 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC-DTTVRL 232 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET-TSCEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC-CCeEEE
Confidence 5789999999999933567999999999999998 667776662 667899999987 8889999998 999999
Q ss_pred EEcC-CCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEec--------CCcEEEEEEcCCCCE
Q psy12365 82 WNTY-TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITL--------PGLCIVMDWDSEGDL 146 (1324)
Q Consensus 82 w~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~--------~~~i~~~~~~~~g~~ 146 (1324)
||+. ++.....+.+|.+.|.+++|+|+|+.|++ +|++||.. ++....+.. ...+++++|+|+|.+
T Consensus 233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence 9987 45666778899999999999999999998 89999987 555555442 124889999999999
Q ss_pred EEEEEcCCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 147 LGIISSNSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 147 l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++ ++.||.|++||..+. ..|++++|+|||++|++|+.||.|++|++..
T Consensus 313 l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 313 LFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999 999999999997521 5789999999999999999999999999764
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-18 Score=208.25 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=153.2
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC----Cc---EEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH----GK---LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~----~~---~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw 82 (1324)
++|.+.|.+++|+|.+|++|++++.||+|++||.. +. ....+.|.+.|.+++|+|+++.|++++. |+.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK-DGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC-CCEEEEE
Confidence 67999999999998678999999999999999972 32 2344458899999999999999999998 9999999
Q ss_pred EcC---CCeEEEEec----------C--CCCCceEEE--EecCCCEEEE-----EEEEEeCC-CCeEEEEe---cCCcEE
Q psy12365 83 NTY---TKKRTIVDS----------G--LRDPLTCLV--WCKQCSMLQL-----SVSIYNKH-GKLIDKIT---LPGLCI 136 (1324)
Q Consensus 83 ~~~---~~~~~~~~~----------~--~~~~v~~~~--~s~~~~~l~~-----~i~v~d~~-g~~~~~~~---~~~~i~ 136 (1324)
|+. +++...... . +...+.++. |+|++..+++ .|++||.. ++....+. |.+.|+
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 984 443333222 1 455677777 5678888888 99999986 66777766 578999
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEc----CCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWS----DDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s----~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
+++|+|+|.++++ ++.||.|++||+++. ..|.++.|+ |++.+|++++.||.|++|++....
T Consensus 219 ~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 219 SICIDEECCVLIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEECTTSCEEEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEEECCCCCEEEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 9999999999999 999999999998732 468889665 468899999999999999987543
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.1e-19 Score=210.87 Aligned_cols=182 Identities=10% Similarity=0.101 Sum_probs=141.8
Q ss_pred CCCCeeEEEEecCCC---------CEEEEE-------------------eCCCcEEEEECC-CcE----EEEEe-CCCCE
Q psy12365 12 HGPGDVYVCWQRRTG---------ELLATT-------------------GRDSSVSIYNKH-GKL----IDKIT-LPGLC 57 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g---------~~l~~~-------------------~~~~~v~v~~~~-~~~----~~~~~-~~~~i 57 (1324)
+++.|.+++|+| ++ ++||++ +.|++|+||+.+ ++. ...+. +.+.|
T Consensus 132 ~~~~V~sv~w~p-~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLN-IEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEE-ECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred CCCceeEEEecc-cCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence 467789999999 76 677764 467899999984 332 12344 56889
Q ss_pred EEEEEcCC------CCEEEEEEcCCCeEEEEEcCCCeE-----------EEEecCCCCCceEEEEecCCCEEEE-----E
Q psy12365 58 IVMDWDSE------GDLLGIISSNSSAVNVWNTYTKKR-----------TIVDSGLRDPLTCLVWCKQCSMLQL-----S 115 (1324)
Q Consensus 58 ~~i~~~~d------~~~l~~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~-----~ 115 (1324)
.+++|+|+ +.+|++++. ||+|++||+.++.. ...+.+|...|++++|+|++ .|++ +
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~-DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQ-EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEET-TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE
T ss_pred EEEEECCCCCCCCCCceEEEEec-CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE
Confidence 99999997 579999998 99999999976531 13567899999999999875 5666 9
Q ss_pred EEEEeCC-CC-eEEEE-ecCCcEEEE--EEcCCC-CEEEEEEcCCCcEEEeecccC------------CCeeEEEEcCCC
Q psy12365 116 VSIYNKH-GK-LIDKI-TLPGLCIVM--DWDSEG-DLLGIISSNSSAVNVWTLLTY------------TLGERISWSDDG 177 (1324)
Q Consensus 116 i~v~d~~-g~-~~~~~-~~~~~i~~~--~~~~~g-~~l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~ 177 (1324)
|++||++ +. ....+ .|.+.|.++ .|+|+| .+|++ ++.|++|+|||+++. ..|.+++|+|++
T Consensus 289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred EEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-eccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence 9999987 43 23333 388899999 578888 89999 999999999998731 247889999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q psy12365 178 QLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 178 ~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+.+++++.|++|++|+.+..
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp TEEEEECSSSEEEEEETTCT
T ss_pred CeEEEeCCCCcEEEEECccc
Confidence 99999999999999998653
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.82 E-value=2.2e-18 Score=218.06 Aligned_cols=186 Identities=15% Similarity=0.261 Sum_probs=159.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|...|.+++|+| +|++|++++.||+|++||. ++.....+. |.+.|.+++|+|+++.|++++. |++|++||..+.
T Consensus 427 ~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-D~~i~iwd~~~~ 504 (694)
T 3dm0_A 427 TGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-DRTIKLWNTLGE 504 (694)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-TSCEEEECTTSC
T ss_pred cCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-CCEEEEEECCCC
Confidence 57999999999999 9999999999999999998 566777776 8899999999999999999998 999999998766
Q ss_pred eEEEEe---cCCCCCceEEEEecCC--CEEEE-----EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCC
Q psy12365 88 KRTIVD---SGLRDPLTCLVWCKQC--SMLQL-----SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS 155 (1324)
Q Consensus 88 ~~~~~~---~~~~~~v~~~~~s~~~--~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~ 155 (1324)
...... .+|...|.+++|+|++ ..+++ +|++||.. ++....+. |.+.|.+++|+|+|++|++ ++.|+
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s-g~~Dg 583 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS-GGKDG 583 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTS
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE-EeCCC
Confidence 544443 3688899999999986 45666 89999987 55555554 7889999999999999999 99999
Q ss_pred cEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q psy12365 156 AVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPKL 199 (1324)
Q Consensus 156 ~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~ 199 (1324)
.|++||+.+. ..|.+++|+|++.++++++ ++.|++|++....+
T Consensus 584 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp BCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred eEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence 9999998732 6789999999999888766 55699999876544
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-18 Score=203.84 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=160.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC---CcEEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEEEE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH---GKLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~---~~~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~iw~ 83 (1324)
.+|.+.|.+++|+| +|++|++++.||.|++||.. ++....+. |.+.|.+++|+|+ +.+|++++. |+.|++||
T Consensus 8 ~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~v~iwd 85 (379)
T 3jrp_A 8 NAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-DGKVLIWK 85 (379)
T ss_dssp EECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-TSCEEEEE
T ss_pred cCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-CCEEEEEE
Confidence 58999999999999 99999999999999999984 34455565 8899999999987 999999998 99999999
Q ss_pred cCCCe--EEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCCCC---eE-EEEecCCcEEEEEEcC--------
Q psy12365 84 TYTKK--RTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKHGK---LI-DKITLPGLCIVMDWDS-------- 142 (1324)
Q Consensus 84 ~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~g~---~~-~~~~~~~~i~~~~~~~-------- 142 (1324)
+.+++ ....+.+|...|.+++|+|+ +..+++ .|++||.... .. ....+...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 99886 56667789999999999999 888888 8999998732 22 2224788999999999
Q ss_pred -----CCCEEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCC---CCEEEEEeCCCcEEEEEcCCC
Q psy12365 143 -----EGDLLGIISSNSSAVNVWTLLTY--------------TLGERISWSDD---GQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 143 -----~g~~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~---~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
++.++++ ++.|+.|++||+++. ..|.+++|+|+ +.+|++++.||.|++|+....
T Consensus 166 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 166 HNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp ----CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 6999999 999999999998621 67899999999 899999999999999998653
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.81 E-value=4.4e-18 Score=197.51 Aligned_cols=149 Identities=13% Similarity=0.283 Sum_probs=115.6
Q ss_pred cCCCCCCeeEEEEecCC---CCEEEEEeCCCcEEEEECC--CcEE-EEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 9 EEPHGPGDVYVCWQRRT---GELLATTGRDSSVSIYNKH--GKLI-DKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~---g~~l~~~~~~~~v~v~~~~--~~~~-~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
..+|.+.|.+++|+| + |++|++++.||.|++||.. +... ..+. |.+.|.+++|+|++++|++++. |+.|++
T Consensus 35 ~~~h~~~v~~~~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~i 112 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSP-PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC-DKTAKM 112 (368)
T ss_dssp SSCCSSCEEEEEECC-TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEE
T ss_pred ccCCCCceEEEEEcC-CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC-CCcEEE
Confidence 368999999999999 8 6999999999999999985 5554 4555 8899999999999999999998 999999
Q ss_pred EEcCCCeEEEEecCCCCCceEEEE--ecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcC
Q psy12365 82 WNTYTKKRTIVDSGLRDPLTCLVW--CKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
||+.+++.... .+|...|.++.| +|++..|++ .|++||.. ++....+.....+.++.+.++ .+++ ++.
T Consensus 113 wd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--MAVV-ATA 188 (368)
T ss_dssp EETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT--EEEE-EEG
T ss_pred EEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC--eeEE-EeC
Confidence 99998887654 468888888888 777776666 77778754 555555555555555555433 4444 556
Q ss_pred CCcEEEeecc
Q psy12365 154 SSAVNVWTLL 163 (1324)
Q Consensus 154 ~~~i~iwd~~ 163 (1324)
++.+.+|+..
T Consensus 189 ~~~i~~~~~~ 198 (368)
T 3mmy_A 189 ERGLIVYQLE 198 (368)
T ss_dssp GGCEEEEECS
T ss_pred CCcEEEEEec
Confidence 6666666665
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.81 E-value=5.6e-18 Score=201.27 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=128.4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.+|..+|.++++ +|++|++++.||.|++||. +++....+. |.+.|.+++| +++.+++++. ||.|++||+.++
T Consensus 130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~-dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS-DSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET-TSCEEEEESSSC
T ss_pred cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC-CCeEEEEECCCC
Confidence 356667777665 7899999999999999997 677777777 8899999998 7889999998 999999999999
Q ss_pred eEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCC-CeE---EEE-ecCCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 88 KRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG-KLI---DKI-TLPGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g-~~~---~~~-~~~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
+....+.+|...|.++.|++ ..+++ .|++||... ... ..+ .|.+.|.++.| +++++++ ++.|+.|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s-~~~dg~i 278 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS-ASGDRTI 278 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE-EETTSEE
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE-EeCCCeE
Confidence 98888899999999999975 36665 899999763 322 111 25667777777 5667777 7777777
Q ss_pred EEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 158 NVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 158 ~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
++||+++. ..|.++.| ++.++++|+.||.|++|+.
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence 77776532 34444544 2445555555555555554
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.81 E-value=2.3e-18 Score=202.28 Aligned_cols=186 Identities=13% Similarity=0.245 Sum_probs=160.7
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-C-------cEEEEEe-CCCCEEEEEEcCCC-CEEEEEEcCCCeE
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-G-------KLIDKIT-LPGLCIVMDWDSEG-DLLGIISSNSSAV 79 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~-------~~~~~~~-~~~~i~~i~~~~d~-~~l~~~~~~d~~i 79 (1324)
.+|.+.|.+++|+|.++++|++++.||.|++||.. + +.+..+. |.+.|.+++|+|++ ..|++++. |+.|
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-dg~i 156 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-DNVI 156 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-TSCE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-CCEE
Confidence 57999999999999668899999999999999973 3 4566666 88999999999998 68888888 9999
Q ss_pred EEEEcCCCeEEEEe--cCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEE--ecCCc-EEEEEEcCCCCEEE
Q psy12365 80 NVWNTYTKKRTIVD--SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKI--TLPGL-CIVMDWDSEGDLLG 148 (1324)
Q Consensus 80 ~iw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~--~~~~~-i~~~~~~~~g~~l~ 148 (1324)
++||+.+++....+ .+|.+.|.+++|+|++..|++ .|++||.+ ++....+ .+.+. +.++.|+|+|.+++
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence 99999999888888 789999999999999999888 89999976 6666665 25554 89999999999999
Q ss_pred EEE---cCCCcEEEeecccC------------CCeeEEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q psy12365 149 IIS---SNSSAVNVWTLLTY------------TLGERISWSDDGQLLAVT-TSGGSVKIYLSKLP 197 (1324)
Q Consensus 149 ~~~---~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~-~~dg~i~~~~~~~~ 197 (1324)
+ + +.++.|.+||..+. ..+..+.|+|+|++|+++ +.||.|++|++...
T Consensus 237 ~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 237 T-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp E-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred E-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 8 8 79999999998731 568899999999999755 47999999998654
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6e-19 Score=203.31 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=148.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeCCC-----CEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPG-----LCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~~~-----~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.|.+.|.+++||| +|++||+++.||+|++||.++ ++..+.|.. .+.+++|||||++|++++. ||+|++||+.
T Consensus 83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-DGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-TSEEEEEECC
T ss_pred CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-CCEEEEEECC
Confidence 5578899999999 999999999999999999766 444445333 5999999999999999999 9999999998
Q ss_pred CCeE-------EEEe----cCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeE----EEE--ecCCcEEEEEEcCCC
Q psy12365 86 TKKR-------TIVD----SGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLI----DKI--TLPGLCIVMDWDSEG 144 (1324)
Q Consensus 86 ~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~----~~~--~~~~~i~~~~~~~~g 144 (1324)
++.. ...+ .+|.+.|.+++|+|+| .+++ .+++||..+... ..+ .|...|.+++|+ |
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 8742 3444 6788899999999999 5554 999999885442 344 366789999999 6
Q ss_pred CEEEEEEcCCCcEEEeecccC----------CCeeEEEE--cCCCCEEEEEeCCCcEEEEEcC
Q psy12365 145 DLLGIISSNSSAVNVWTLLTY----------TLGERISW--SDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 145 ~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~--s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
+.+++ ++ ++.|++||.... ..+..+.| +||+..|++++.+|. ++|..+
T Consensus 237 ~~LAS-a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 237 YKVVL-TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TEEEE-EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CEEEE-Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 88888 65 699999998722 57899999 999999999999999 999976
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.80 E-value=7.1e-18 Score=196.88 Aligned_cols=184 Identities=10% Similarity=0.145 Sum_probs=152.7
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-C---CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-L---PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~---~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|...|.+++|+|.++++|++++.|+.|++||..+.....+. + ...|.+++|+|+++.|++++. |+.|++||+.
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-TGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-TSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-CCCEEEEECC
Confidence 4799999999999944689999999999999999887777766 3 377999999999999999998 9999999995
Q ss_pred CCeEEEEecCCCCCceEEEEecCCC-EEEE-----EEEEEeCC-----CCeEEEEecCCcEEEEEEcC-CCCEEEEEEcC
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCS-MLQL-----SVSIYNKH-----GKLIDKITLPGLCIVMDWDS-EGDLLGIISSN 153 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~-----~i~v~d~~-----g~~~~~~~~~~~i~~~~~~~-~g~~l~~~~~~ 153 (1324)
++....+.+|...|.+++|+|+++ ++++ .|++||.. +.....+.+.+.|.+++|+| +|.+|++ ++.
T Consensus 194 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~-~~~ 271 (383)
T 3ei3_B 194 -GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT-TDQ 271 (383)
T ss_dssp -SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE-EES
T ss_pred -CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE-EcC
Confidence 555566778999999999999998 7777 89999976 55667778999999999999 9999999 999
Q ss_pred CCcEEEeecccC-----------------CCeeEEEEcCCCCEEE---------EEeCCCcEEEEEcCCC
Q psy12365 154 SSAVNVWTLLTY-----------------TLGERISWSDDGQLLA---------VTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 154 ~~~i~iwd~~~~-----------------~~i~~~~~s~~~~~l~---------~~~~dg~i~~~~~~~~ 197 (1324)
|+.|++||+++. ..+. +.|+|++..++ +++.||.|++|++...
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 999999998732 1111 34555444444 4567999999998654
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.80 E-value=4.9e-19 Score=199.84 Aligned_cols=185 Identities=16% Similarity=0.260 Sum_probs=153.4
Q ss_pred CCCCCCeeEEEEec-CCCCEEEEEeCCCcEEEEECC-C--cEEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEEE
Q psy12365 10 EPHGPGDVYVCWQR-RTGELLATTGRDSSVSIYNKH-G--KLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp-~~g~~l~~~~~~~~v~v~~~~-~--~~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~iw 82 (1324)
.+|.+.|.+++|+| .+|++|++++.|++|++||.. + .....+. |.+.|.+++|+|+ |.+|++++. |+.|++|
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~-D~~i~lw 132 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-DGAISLL 132 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS-SSCEEEE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC-CCCEEEE
Confidence 58999999999986 238999999999999999984 3 3455555 8889999999998 788999988 9999999
Q ss_pred EcCCCeE---EEEecCCCCCceEEEEecC-----------------CCEEEE-----EEEEEeCCCC----eEEEEe-cC
Q psy12365 83 NTYTKKR---TIVDSGLRDPLTCLVWCKQ-----------------CSMLQL-----SVSIYNKHGK----LIDKIT-LP 132 (1324)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~v~~~~~s~~-----------------~~~l~~-----~i~v~d~~g~----~~~~~~-~~ 132 (1324)
|..++.. ...+.+|...+.+++|+|+ +..|++ .|++||.... ....+. |.
T Consensus 133 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp EECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred ecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence 9986532 3445678999999999997 356777 8999998632 233332 77
Q ss_pred CcEEEEEEcCCC----CEEEEEEcCCCcEEEeeccc--------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 133 GLCIVMDWDSEG----DLLGIISSNSSAVNVWTLLT--------------YTLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 133 ~~i~~~~~~~~g----~~l~~~~~~~~~i~iwd~~~--------------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
+.|.+++|+|++ ..|++ ++.|++|++|+..+ ...|++++|+|+|++|++++.||.|++|+.
T Consensus 213 ~~V~~v~~sp~~~~~~~~las-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIAS-CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEE-EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CceEEEEecCCCCCCCceEEE-EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 899999999987 78999 99999999998753 157899999999999999999999999997
Q ss_pred CC
Q psy12365 195 KL 196 (1324)
Q Consensus 195 ~~ 196 (1324)
..
T Consensus 292 ~~ 293 (316)
T 3bg1_A 292 SV 293 (316)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.80 E-value=2e-18 Score=202.78 Aligned_cols=179 Identities=14% Similarity=0.225 Sum_probs=145.2
Q ss_pred CeeEEEEecCCCCEEE-EEeCCCcEEEEECCC--c---EEEEEe-CCCCEEEEEEcC-CCCEEEEEEcCCCeEEEEEcCC
Q psy12365 15 GDVYVCWQRRTGELLA-TTGRDSSVSIYNKHG--K---LIDKIT-LPGLCIVMDWDS-EGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~-~~~~~~~v~v~~~~~--~---~~~~~~-~~~~i~~i~~~~-d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
....++++| +...++ +++.+|.|.||+... + ....+. |.+.|.+++|+| ++..|++++. ||.|++||+.+
T Consensus 36 ~~~~~~~~~-~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~-dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNP-KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE-DCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECS-SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET-TSEEEEEECCT
T ss_pred CCCcEEECC-CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC-CCeEEEEEccC
Confidence 345688888 654443 467899999999733 2 222333 788999999999 9999999998 99999999987
Q ss_pred C-------eEEEEecCCCCCceEEEEecCC-CEEEE-----EEEEEeCC-CCeEEEE--e-cCCcEEEEEEcCCCCEEEE
Q psy12365 87 K-------KRTIVDSGLRDPLTCLVWCKQC-SMLQL-----SVSIYNKH-GKLIDKI--T-LPGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 87 ~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~-----~i~v~d~~-g~~~~~~--~-~~~~i~~~~~~~~g~~l~~ 149 (1324)
+ .....+.+|...|.+++|+|++ ..|++ .|++||.. ++....+ . |.+.|.+++|+|+|.+|++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 6 4456677999999999999998 57777 89999976 6666666 2 7889999999999999999
Q ss_pred EEcCCCcEEEeecccC------------CCeeEEEEcCCCCEEEEE---eCCCcEEEEEcCC
Q psy12365 150 ISSNSSAVNVWTLLTY------------TLGERISWSDDGQLLAVT---TSGGSVKIYLSKL 196 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~---~~dg~i~~~~~~~ 196 (1324)
++.|+.|++||+++. ..+..+.|+|+|.+|++| +.||.|++|+.+.
T Consensus 194 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 194 -SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp -EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred -EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 999999999998732 237889999999988888 6888888888643
No 94
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.9e-18 Score=205.58 Aligned_cols=332 Identities=10% Similarity=0.004 Sum_probs=227.0
Q ss_pred HHHHHHHhhcHHHHHHHHHhh----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHH
Q psy12365 624 SLHKVLKLLNWKEAWNICAVL----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHV 699 (1324)
Q Consensus 624 ~~~~~l~~~~~~~A~~~~~~~----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~ 699 (1324)
.-..++..|++++|+..++.. +++..|..+|..++..|+++.|+.+|.++.. .-.. ....+..+|.+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--------LKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCSC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--------cChH-HHHHHHHHHHH
Confidence 345678899999999888755 7899999999999999999999999887632 1222 45677899999
Q ss_pred HHHcCCHHHHHHHHHhCCChH--------HHHH-----------------------------------------------
Q psy12365 700 AALLGNHDTAQQRYLTSDIPT--------MALT----------------------------------------------- 724 (1324)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~~~~--------~a~~----------------------------------------------- 724 (1324)
+..+|++++|...|.++.... ..+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999987641100 0000
Q ss_pred --------------------------------HHH---HHhhHHHHHHHHHhcCC----------------CCchHHHHH
Q psy12365 725 --------------------------------LRR---DLRQWREALALATSLGS----------------NQTPIISCD 753 (1324)
Q Consensus 725 --------------------------------~~~---~~~~~~~Al~~~~~~~~----------------~~~~~~~~~ 753 (1324)
.+. +.|++++|+..+++... +....++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 011 15666666666555222 223456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHH
Q psy12365 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADIL 828 (1324)
Q Consensus 754 ~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~ 828 (1324)
+|..+...|++++|+..|++++...|. ...+..++.++...|++++|++.++++.. ..++..+|.++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 777777777777777777777766662 44455567777777777777777666521 56667777777
Q ss_pred HHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 829 QQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGA 895 (1324)
Q Consensus 829 ~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~ 895 (1324)
...|++++|+..|+++.. +..++.+|...|++++|+.++++.. .+.++..+|.++...|++++|+..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777642 4455666777777777777666543 455666677777777777777777
Q ss_pred HHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH---cCCHHHHHHHHHHcCCHHHHHHHHHhccchh
Q psy12365 896 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK---HGDFGAAIHFLILSKCYQDAFNLSQQHKKLH 972 (1324)
Q Consensus 896 y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~---~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~ 972 (1324)
|.++. .+....... .....+...+|.++.. .|++++|+..|.++
T Consensus 395 ~~~a~------~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a----------------- 441 (514)
T 2gw1_A 395 YDLAI------ELENKLDGI----------YVGIAPLVGKATLLTRNPTVENFIEATNLLEKA----------------- 441 (514)
T ss_dssp HHHHH------HHHHTSSSC----------SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------------
T ss_pred HHHHH------HhhhccchH----------HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH-----------------
Confidence 76632 222110000 0013367889999999 99999999998877
Q ss_pred HhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 973 EFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 973 ~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+. .|..+..+..+|..|...|++.+|..+|.++
T Consensus 442 -------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 442 -------SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp -------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 21 4567788889998888777777777766654
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.79 E-value=8e-18 Score=201.30 Aligned_cols=143 Identities=9% Similarity=0.172 Sum_probs=118.0
Q ss_pred EeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe-----------EEEEecCCC------------CCceEEEEec
Q psy12365 51 ITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK-----------RTIVDSGLR------------DPLTCLVWCK 107 (1324)
Q Consensus 51 ~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~s~ 107 (1324)
+.+.+.|.+++|+|+|++|++++. ||.|+|||+.++. ....+.+|. +.|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDK-GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEET-TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcC-CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 345689999999999999999998 9999999998766 466778898 8899999999
Q ss_pred CC--CEEEE-----EEEEEeCCCCeE----------------------------------------EEE--ecCCcEEEE
Q psy12365 108 QC--SMLQL-----SVSIYNKHGKLI----------------------------------------DKI--TLPGLCIVM 138 (1324)
Q Consensus 108 ~~--~~l~~-----~i~v~d~~g~~~----------------------------------------~~~--~~~~~i~~~ 138 (1324)
++ ..|++ .|++||...... ..+ .|.+.|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 67776 899999753111 111 277889999
Q ss_pred EEcCCCCEEEEEEcCCCcEEEeeccc-C-----------------CCeeEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q psy12365 139 DWDSEGDLLGIISSNSSAVNVWTLLT-Y-----------------TLGERISWSDDG-QLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 139 ~~~~~g~~l~~~~~~~~~i~iwd~~~-~-----------------~~i~~~~~s~~~-~~l~~~~~dg~i~~~~~~~ 196 (1324)
+|+|+|++|++ + .|+.|++||+.+ . ..|++++|+|++ .+|++++.||.|++|+++.
T Consensus 184 ~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 184 SINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 99999999998 7 799999999871 1 458899999998 8999999999999999765
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.79 E-value=6.4e-18 Score=195.98 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=155.2
Q ss_pred CCCCCeeEEEEecCC----CCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEcC-CCCEEEEEEcCCCeEEEEE
Q psy12365 11 PHGPGDVYVCWQRRT----GELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWDS-EGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~----g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~~-d~~~l~~~~~~d~~i~iw~ 83 (1324)
.|...|.+++|+| + |.+|++++.||.|++||. +++.+..+. |.+.|.+++|+| ++..|++++. ||.|++||
T Consensus 67 ~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-dg~i~iwd 144 (366)
T 3k26_A 67 DADENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-DHALRLWN 144 (366)
T ss_dssp CTTCCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-TSCEEEEE
T ss_pred CCCCcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-CCeEEEEE
Confidence 4778999999999 8 679999999999999997 578888888 889999999999 9999999998 99999999
Q ss_pred cCCCeEEEEe---cCCCCCceEEEEecCCCEEEE-----EEEEEeCCC-CeEEEEe------------------------
Q psy12365 84 TYTKKRTIVD---SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHG-KLIDKIT------------------------ 130 (1324)
Q Consensus 84 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g-~~~~~~~------------------------ 130 (1324)
+.+++....+ .+|...|.+++|+|++..|++ .|++||... +....+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 9999888777 689999999999999999988 899999762 2111111
Q ss_pred -----cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC------------------------CCeeEEEEcCC--CCE
Q psy12365 131 -----LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY------------------------TLGERISWSDD--GQL 179 (1324)
Q Consensus 131 -----~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~------------------------~~i~~~~~s~~--~~~ 179 (1324)
+.+.|.+++|+ ++++++ ++.|+.|++||+.+. ..|+++.|+|+ |++
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred ccccCCcceEEEEEEc--CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 67788999998 678888 889999999997621 35778899998 999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q psy12365 180 LAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 180 l~~~~~dg~i~~~~~~~~ 197 (1324)
|++++.||.|++|++...
T Consensus 302 l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEECTTSCEEEEECCSS
T ss_pred EEEEecCCcEEEEECCCC
Confidence 999999999999997653
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.2e-18 Score=197.21 Aligned_cols=184 Identities=20% Similarity=0.297 Sum_probs=156.9
Q ss_pred CCCCCCeeEEEEecCC--CCEEEEEeCCCcEEEEECC-Cc--EEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEE
Q psy12365 10 EPHGPGDVYVCWQRRT--GELLATTGRDSSVSIYNKH-GK--LIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNV 81 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~--g~~l~~~~~~~~v~v~~~~-~~--~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~i 81 (1324)
.+|...|.+++|+| + +++|++++.||.|++||.. ++ ....+. |...|.+++|+|+ +..+++++. |+.|++
T Consensus 52 ~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~v 129 (379)
T 3jrp_A 52 TGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-DGKVSV 129 (379)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-TSEEEE
T ss_pred cCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-CCcEEE
Confidence 57999999999998 6 9999999999999999984 43 444555 7889999999999 999999998 999999
Q ss_pred EEcCCC--eEEEEecCCCCCceEEEEec-------------CCCEEEE-----EEEEEeCC-CCe----EEEEe-cCCcE
Q psy12365 82 WNTYTK--KRTIVDSGLRDPLTCLVWCK-------------QCSMLQL-----SVSIYNKH-GKL----IDKIT-LPGLC 135 (1324)
Q Consensus 82 w~~~~~--~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~-----~i~v~d~~-g~~----~~~~~-~~~~i 135 (1324)
||+.++ .....+.+|...|.+++|+| ++..+++ .|++||.. +.. ...+. |.+.|
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 999876 33445568999999999999 6888887 89999975 322 22232 78899
Q ss_pred EEEEEcCC---CCEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 136 IVMDWDSE---GDLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 136 ~~~~~~~~---g~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.+++|+|+ +.++++ ++.|+.|++||+.+. ..|++++|+|+|++|++++.||.|++|++..
T Consensus 210 ~~~~~sp~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLAS-VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEECCCCSSSEEEEE-EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eEEEECCCCCCCCeEEE-EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999 889999 999999999998731 5789999999999999999999999999764
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.79 E-value=1.5e-17 Score=195.20 Aligned_cols=184 Identities=15% Similarity=0.297 Sum_probs=161.3
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC--CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH--GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~--~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
.+|...|.+++|++ ++|++++.||.|++||.. +.....+. |.+.|.+++|+|++..|++++. |+.|++||+.+
T Consensus 173 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~ 248 (401)
T 4aez_A 173 AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN-DNVVQIWDARS 248 (401)
T ss_dssp CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTC
T ss_pred cCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEccCCC
Confidence 47999999999965 799999999999999984 45566666 8899999999999999999998 99999999999
Q ss_pred CeEEEEecCCCCCceEEEEecCCCE-EEE-------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEE-EcCCCc
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSM-LQL-------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGII-SSNSSA 156 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~~-------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~-~~~~~~ 156 (1324)
++....+.+|...|.+++|+|++.. +++ .|++||.. ++....+.+.+.+.+++|+|+|..+++. |+.++.
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 8888888899999999999998654 443 89999976 7788888889999999999999999883 237999
Q ss_pred EEEeecccC------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 157 VNVWTLLTY------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 157 i~iwd~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
|.+||+.+. ..|.++.|+|+|++|++++.||.|++|++...
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999998732 57899999999999999999999999998654
No 99
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.79 E-value=1.2e-16 Score=191.92 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=152.4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCCCEEEEEEc--CCCCEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPGLCIVMDWD--SEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~~i~~i~~~--~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|.+.|.+++|+| ++ .+++++.||+|++||. +++.+..+. |.+.|.+++|+ +++..+++++. |+.|++||+.
T Consensus 159 ~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~-d~~i~vwd~~ 235 (464)
T 3v7d_B 159 SGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-DNTLHVWKLP 235 (464)
T ss_dssp CCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET-TSCEEEEECC
T ss_pred eCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC-CCcEEEeeCC
Confidence 57999999999999 88 9999999999999998 677777777 88999999998 57889999998 9999999998
Q ss_pred CCe-----------------------EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcE
Q psy12365 86 TKK-----------------------RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLC 135 (1324)
Q Consensus 86 ~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i 135 (1324)
++. ......+|...+.++ ++++..+++ .|++||.. ++....+. |.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence 664 244567788888776 677888887 89999976 55566555 78899
Q ss_pred EEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 136 IVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 136 ~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.++.|+|+|+.+++ ++.|+.|++||+.+. ..|.++.|+ +.++++++.||.|++|+...
T Consensus 314 ~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 314 YSTIYDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTTTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 99999999999999 999999999998732 678888887 57899999999999998754
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.79 E-value=6.8e-19 Score=205.14 Aligned_cols=182 Identities=13% Similarity=0.207 Sum_probs=146.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-c---EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-K---LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~---~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
.+|...|.+++|+| +|++|++++.|+.|++||... + ....+. |.+.|.+++|+|+++.|++++. |+.|++||+
T Consensus 52 ~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~ 129 (377)
T 3dwl_C 52 SDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-ARVISVCYF 129 (377)
T ss_dssp CCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-SSCEEECCC
T ss_pred ecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-CCeEEEEEE
Confidence 57999999999999 999999999999999999843 3 244444 8889999999999999999998 999999999
Q ss_pred CCCe---EEEEecC-CCCCceEEEEecCCCEEEE-----EEEEEeCC-------------------CCeEEEEecCCcEE
Q psy12365 85 YTKK---RTIVDSG-LRDPLTCLVWCKQCSMLQL-----SVSIYNKH-------------------GKLIDKITLPGLCI 136 (1324)
Q Consensus 85 ~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-------------------g~~~~~~~~~~~i~ 136 (1324)
.+++ ....+.+ |...|.+++|+|++++|++ .|++||.. ++....+.|.+.|.
T Consensus 130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 209 (377)
T 3dwl_C 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH 209 (377)
T ss_dssp -----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE
T ss_pred CCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE
Confidence 8775 2445556 9999999999999999988 89999974 33333445788999
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
+++|+|+|++|++ ++.|+.|++||+.+. ..|.++.|+|+|++|++++.++.+ +|+..
T Consensus 210 ~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 210 AVGFSPSGNALAY-AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEECTTSSCEEE-EETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEECCCCCEEEE-EeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999 999999999998722 468999999999999888766655 66654
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.79 E-value=8.2e-18 Score=195.63 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=157.6
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|...|.+++|+| ++++|++++.||.|++||. +++....+. |...|.+++|+|+++.|++++. |+.|++||+.
T Consensus 49 ~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~ 126 (372)
T 1k8k_C 49 KEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-SRVISICYFE 126 (372)
T ss_dssp ECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-TSSEEEEEEE
T ss_pred cCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCEEEEEEec
Confidence 47999999999999 9999999999999999998 444443332 7789999999999999999998 9999999998
Q ss_pred CCe----EEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-------------------CCeEEEEe-cCCcEE
Q psy12365 86 TKK----RTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-------------------GKLIDKIT-LPGLCI 136 (1324)
Q Consensus 86 ~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-------------------g~~~~~~~-~~~~i~ 136 (1324)
.+. ......+|...|.+++|+|++..|++ .|++||.. ++....+. |.+.|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE
Confidence 765 34444678999999999999999988 89999953 55666553 778999
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++|+|+|.+|++ ++.|+.|++||+.+. ..|.+++|+|++.+++++ .||.+++|+...
T Consensus 207 ~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 207 GVCFSANGSRVAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSSSEEEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEECCCCCEEEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999 999999999999732 579999999999988877 899999999765
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.78 E-value=1.1e-18 Score=207.27 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=150.4
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe----CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 8 LEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT----LPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 8 ~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~----~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
...+|.+.|.+++|+|.++++|++++.||+|++||..+.....+. +...+.+++|+|++.+|++++. ||.|++||
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-dg~i~~wd 237 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-VGNVILLN 237 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-SSBEEEEE
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-CCcEeeec
Confidence 346899999999999856899999999999999999887766655 2245789999999999999988 99999999
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCC-EEEE-----EEEEEeCC-CCeE----EEEecCCcEEEEEEcCCCCEEEEEEc
Q psy12365 84 TYTKKRTIVDSGLRDPLTCLVWCKQCS-MLQL-----SVSIYNKH-GKLI----DKITLPGLCIVMDWDSEGDLLGIISS 152 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~-----~i~v~d~~-g~~~----~~~~~~~~i~~~~~~~~g~~l~~~~~ 152 (1324)
+++... ..+.+|.+.|.+++|+|+++ ++++ .|++||++ ++.. ....|.+.|.+++|+|+|.+|++ ++
T Consensus 238 ~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-~~ 315 (435)
T 4e54_B 238 MDGKEL-WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TD 315 (435)
T ss_dssp SSSCBC-CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-EE
T ss_pred cCccee-EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE-Ec
Confidence 986543 45678999999999999987 4555 89999976 2222 22337889999999999999999 99
Q ss_pred CCCcEEEeecccC----------------CCeeEEEEcCCCCEEEEEeC------------CCcEEEEEcCCC
Q psy12365 153 NSSAVNVWTLLTY----------------TLGERISWSDDGQLLAVTTS------------GGSVKIYLSKLP 197 (1324)
Q Consensus 153 ~~~~i~iwd~~~~----------------~~i~~~~~s~~~~~l~~~~~------------dg~i~~~~~~~~ 197 (1324)
.|+.|+|||+.+. ..+....|+|++..++++.. ++.|++|+....
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG 388 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence 9999999998732 12345678888888877642 357999996544
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.8e-16 Score=179.06 Aligned_cols=143 Identities=8% Similarity=0.060 Sum_probs=120.9
Q ss_pred cEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEE
Q psy12365 46 KLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIY 119 (1324)
Q Consensus 46 ~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~ 119 (1324)
+....+. |.+.|.+++| |++.+|++++. ||.|++||+.++.....+..|...|.+++|+|++..+++ .+.+|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~-dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSR-DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEET-TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEc-CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4556666 8899999999 99999999998 999999999998888888889999999999999999988 89999
Q ss_pred eCC----CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeeccc--------CCCeeEEEEcC-CCCEEEEEeC
Q psy12365 120 NKH----GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLT--------YTLGERISWSD-DGQLLAVTTS 185 (1324)
Q Consensus 120 d~~----g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~--------~~~i~~~~~s~-~~~~l~~~~~ 185 (1324)
+.. ++....+. |.+.|.++.| ++..+++ ++.|+.|.+||... ...+.++.|+| ++..+++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVIS-GSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEE-EETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEE-EeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 965 23344443 7788999999 5778888 99999999999541 16788888887 8889999999
Q ss_pred CCcEEEEE
Q psy12365 186 GGSVKIYL 193 (1324)
Q Consensus 186 dg~i~~~~ 193 (1324)
||.+++|+
T Consensus 164 d~~i~i~d 171 (313)
T 3odt_A 164 DKTIKLWQ 171 (313)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 99999987
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.6e-17 Score=191.83 Aligned_cols=184 Identities=11% Similarity=0.127 Sum_probs=155.8
Q ss_pred CCCCCeeEEEEecCC---CCEEEEEeCCCcEEEEECC-Cc-EEEEEe-CCCCEEEEEE------cCCCCEEEEEEcCCCe
Q psy12365 11 PHGPGDVYVCWQRRT---GELLATTGRDSSVSIYNKH-GK-LIDKIT-LPGLCIVMDW------DSEGDLLGIISSNSSA 78 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~---g~~l~~~~~~~~v~v~~~~-~~-~~~~~~-~~~~i~~i~~------~~d~~~l~~~~~~d~~ 78 (1324)
+|...|.+++|+| + |++|++++.||.|++||.. ++ .+..+. |.+.|.++.| +|+++.|++++. |+.
T Consensus 63 ~~~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-d~~ 140 (357)
T 3i2n_A 63 EKAKPIKCGTFGA-TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-DGT 140 (357)
T ss_dssp EESSCEEEEECTT-CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-TSC
T ss_pred cccCcEEEEEEcC-CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-CCe
Confidence 6888999999999 8 7999999999999999984 44 666777 8889999955 789999999998 999
Q ss_pred EEEEEcCCCe-EEEEecCCCC----CceEEE----EecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcC-
Q psy12365 79 VNVWNTYTKK-RTIVDSGLRD----PLTCLV----WCKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDS- 142 (1324)
Q Consensus 79 i~iw~~~~~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~- 142 (1324)
|++||+.++. ....+..|.+ .+.++. |+|++..+++ .|++||.+ ++......+.+.|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCS
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCC
Confidence 9999998775 5555555544 788888 7889999988 99999987 45555566889999999999
Q ss_pred --CCCEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q psy12365 143 --EGDLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQ-LLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 143 --~g~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~-~l~~~~~dg~i~~~~~~~~ 197 (1324)
++..+++ ++.++.|++||+++. ..|+++.|+|+++ ++++++.||.|++|+++.+
T Consensus 221 ~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 221 DISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp SSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 9999999 999999999998721 5789999999998 8999999999999998654
No 105
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.1e-18 Score=204.73 Aligned_cols=182 Identities=9% Similarity=-0.022 Sum_probs=149.3
Q ss_pred CCCCCeeEEEEecCC------CCEEEEEeCCCcEEEEECCCc------------EEEEEe-CCCCEEEEEEcCCCCEEEE
Q psy12365 11 PHGPGDVYVCWQRRT------GELLATTGRDSSVSIYNKHGK------------LIDKIT-LPGLCIVMDWDSEGDLLGI 71 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~------g~~l~~~~~~~~v~v~~~~~~------------~~~~~~-~~~~i~~i~~~~d~~~l~~ 71 (1324)
.|.+.|..++|+| + +.+||+++.||+|++||+... +...+. |.+.|.+++|+|++ .|++
T Consensus 205 ~~~~~V~~v~wsp-~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 205 HSFGEVWDLKWHE-GCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp ECCCSEEEEEECS-SCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred ecCCcEEEEEECC-CCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 4678899999999 6 579999999999999998432 122444 77899999999865 7999
Q ss_pred EEcCCCeEEEEEcCCC-eEEEEecCCCCCceEE--EEecCC-CEEEE-----EEEEEeCC-CCeEEEEe-cC--CcEEEE
Q psy12365 72 ISSNSSAVNVWNTYTK-KRTIVDSGLRDPLTCL--VWCKQC-SMLQL-----SVSIYNKH-GKLIDKIT-LP--GLCIVM 138 (1324)
Q Consensus 72 ~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~l~~-----~i~v~d~~-g~~~~~~~-~~--~~i~~~ 138 (1324)
++. ||+|++||++++ .....+.+|.+.|.++ .|+|+| .+|++ +|++||++ ++....+. +. +.|.++
T Consensus 283 gs~-DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 283 GFK-NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV 361 (524)
T ss_dssp EET-TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred EeC-CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence 988 999999999865 3445567899999999 578887 78887 99999976 33333332 22 357899
Q ss_pred EEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 139 DWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 139 ~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+|+|+++.+++ ++.|++|++||+++. ..|++++|||+|++|++|+.||+|++|+...
T Consensus 362 ~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 362 VYCPQIYSYIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEETTTTEEEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EeCCCcCeEEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999999999 999999999998732 6899999999999999999999999999654
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.78 E-value=1.8e-16 Score=189.06 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=115.8
Q ss_pred EEEEe-CCCCE-EEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEe
Q psy12365 48 IDKIT-LPGLC-IVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYN 120 (1324)
Q Consensus 48 ~~~~~-~~~~i-~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d 120 (1324)
...+. |.+.+ .+ ++++|+.+++++. ||.|++||..+++....+.+|.+.|+++.|+ +..+++ .|++||
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNRIVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTEEEEEET-TSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eEEecccCCCcEEE--EEEcCCEEEEEEC-CCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 44455 66654 54 5557899999998 9999999999999888899999999999998 456666 899999
Q ss_pred CC-CCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEeCCCc
Q psy12365 121 KH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTTSGGS 188 (1324)
Q Consensus 121 ~~-g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~ 188 (1324)
.. ++....+. |.+.|.++.|+ +..+++ ++.|+.|++||+.+. ..|.++.| ++.++++++.||.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVS-GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEE-EETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEE-EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 76 66666655 77889999995 567888 999999999998732 67888888 7889999999999
Q ss_pred EEEEEcCCC
Q psy12365 189 VKIYLSKLP 197 (1324)
Q Consensus 189 i~~~~~~~~ 197 (1324)
|++|+....
T Consensus 261 i~iwd~~~~ 269 (445)
T 2ovr_B 261 VKVWDPETE 269 (445)
T ss_dssp EEEEEGGGT
T ss_pred EEEEECCCC
Confidence 999997653
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.8e-18 Score=213.80 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=159.6
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC---CcEEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEEE
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH---GKLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~---~~~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~iw 82 (1324)
..+|.+.|.+++|+| +|++|++++.||.|++||.. +.....+. |.+.|.+++|+|+ ++.|++++. ||.|++|
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-Dg~I~vw 82 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-DGKVLIW 82 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-TSCEEEE
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-CCeEEEE
Confidence 368999999999999 99999999999999999984 34455565 8899999999998 999999998 9999999
Q ss_pred EcCCCe--EEEEecCCCCCceEEEEecC--CCEEEE-----EEEEEeCCCC----eEEEEecCCcEEEEEEcC-------
Q psy12365 83 NTYTKK--RTIVDSGLRDPLTCLVWCKQ--CSMLQL-----SVSIYNKHGK----LIDKITLPGLCIVMDWDS------- 142 (1324)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~-----~i~v~d~~g~----~~~~~~~~~~i~~~~~~~------- 142 (1324)
|+.++. ......+|...|.+++|+|+ +..+++ .|++||.... ......+.+.|.++.|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 998886 55667789999999999999 898888 8999998733 222334788999999999
Q ss_pred ------CCCEEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCC---CCEEEEEeCCCcEEEEEcCCC
Q psy12365 143 ------EGDLLGIISSNSSAVNVWTLLTY--------------TLGERISWSDD---GQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 143 ------~g~~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~---~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+|..+++ ++.||.|++||+++. ..|++++|+|+ |.++++++.||.|++|+....
T Consensus 163 ~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 163 EHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----CGGGCCEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccCCCCCEEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999 999999999998621 67999999999 899999999999999998653
No 108
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=4.8e-17 Score=199.82 Aligned_cols=332 Identities=13% Similarity=0.061 Sum_probs=251.1
Q ss_pred HHHHHHHhhcHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHH
Q psy12365 624 SLHKVLKLLNWKEAWNICAVL-----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGH 698 (1324)
Q Consensus 624 ~~~~~l~~~~~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~ 698 (1324)
.-..++..|++++|.+.++.. .++..|..+|..+...|+++.|+..|.++... -.. ..+.+..+|.
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT-CHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCc-hHHHHHHHHH
Confidence 345578889999999998865 57899999999999999999999999876322 222 4566789999
Q ss_pred HHHHcCCHHHHHHHHHhCC-Ch----------------HHHHH-------------------------------------
Q psy12365 699 VAALLGNHDTAQQRYLTSD-IP----------------TMALT------------------------------------- 724 (1324)
Q Consensus 699 ~~~~~g~~~~A~~~~~~~~-~~----------------~~a~~------------------------------------- 724 (1324)
++...|++++|+..|.... .+ ..++.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999999884321 00 01111
Q ss_pred -----------------------------HHHHHhhHHHHHHHHHhcC---CCCc------hHHHHHHHHHHHHcCCHHH
Q psy12365 725 -----------------------------LRRDLRQWREALALATSLG---SNQT------PIISCDYAQQLEMTGQHAQ 766 (1324)
Q Consensus 725 -----------------------------~~~~~~~~~~Al~~~~~~~---~~~~------~~~~~~~~~~~~~~g~~~~ 766 (1324)
.....+++++|+..+++.. |.+. ..++..+|..+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1122357888888877732 2221 3467788899999999999
Q ss_pred HHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHH
Q psy12365 767 ALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLY 841 (1324)
Q Consensus 767 A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y 841 (1324)
|+..|++++...|. ...+..++.++...|++++|++.+++. ++ ..++..+|.++...|++++|+..|
T Consensus 262 A~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 262 AQVLLQESINLHPT--------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHCCC--------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998884 455667899999999999999988876 22 788999999999999999999999
Q ss_pred HHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHH
Q psy12365 842 ESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 908 (1324)
Q Consensus 842 ~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~ 908 (1324)
+++.. +..++.+|...|++++|+.++++.. ++.++..+|.++...|++++|+..|.++. .+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------~~ 407 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK------RL 407 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH------HH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH------Hc
Confidence 98864 5677889999999999999887764 66788889999999999999999998843 33
Q ss_pred HHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHc----------CCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhc
Q psy12365 909 DLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH----------GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 978 (1324)
Q Consensus 909 ~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~----------g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l 978 (1324)
........ ........+|.++... |++++|+.+|.++
T Consensus 408 ~~~~~~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------------------- 454 (537)
T 3fp2_A 408 EEVQEKIH----------VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA----------------------- 454 (537)
T ss_dssp HHHCSSCS----------STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH-----------------------
T ss_pred CCcchhhH----------HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH-----------------------
Confidence 32211100 1122345677888888 9999999999877
Q ss_pred cCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 979 LEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 979 ~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+. .|.++..+..+|..|...|++.+|..+|.++
T Consensus 455 -~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 455 -CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp -HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22 5567888999998888887777777776654
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.77 E-value=2.4e-17 Score=177.93 Aligned_cols=178 Identities=13% Similarity=0.136 Sum_probs=133.8
Q ss_pred CCCCeeEEEEecCC----CCEEEEEeC--------------------CCcEEEEEC--CCcEEEEEe-CCCCEEEEEEcC
Q psy12365 12 HGPGDVYVCWQRRT----GELLATTGR--------------------DSSVSIYNK--HGKLIDKIT-LPGLCIVMDWDS 64 (1324)
Q Consensus 12 h~~~i~~~~~sp~~----g~~l~~~~~--------------------~~~v~v~~~--~~~~~~~~~-~~~~i~~i~~~~ 64 (1324)
|...|..++++| + ++++++++. |+.|++|+. +|+.+..+. |...+..++|+|
T Consensus 110 ~~~~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~ 188 (356)
T 2w18_A 110 EIREIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE 188 (356)
T ss_dssp SEEEEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred cccceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence 334678888888 8 777777553 888888887 466666666 777788888888
Q ss_pred ---CCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCC---CCceEEEEecCCCEEE------------E-----EEEEEeC
Q psy12365 65 ---EGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLR---DPLTCLVWCKQCSMLQ------------L-----SVSIYNK 121 (1324)
Q Consensus 65 ---d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~------------~-----~i~v~d~ 121 (1324)
|+..|++++. |++|+|||+.+++....+.+|. ..+.+++|+|+|..++ + ++++||.
T Consensus 189 ~~g~~~~LaSgS~-D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 189 VQGMQEALLGTTI-MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EETSTTEEEEEET-TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred cCCCCceEEEecC-CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 7789999998 9999999999999888887654 3577789999998873 2 8999997
Q ss_pred C-CCeEEEEe------cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CC-eeEEEEcCCCCEEEEE
Q psy12365 122 H-GKLIDKIT------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TL-GERISWSDDGQLLAVT 183 (1324)
Q Consensus 122 ~-g~~~~~~~------~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~-i~~~~~s~~~~~l~~~ 183 (1324)
. |+....+. |.+.+.+..+ +|..+++ ++.|++|+|||+.+. .. +..++|||||++|++|
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS-gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA-ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE-EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE-EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence 6 55444331 2223333333 3678888 999999999999843 23 4468999999999999
Q ss_pred eCCCcEEEEEc
Q psy12365 184 TSGGSVKIYLS 194 (1324)
Q Consensus 184 ~~dg~i~~~~~ 194 (1324)
+.|++|++|+.
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999985
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.77 E-value=2.7e-17 Score=194.69 Aligned_cols=186 Identities=12% Similarity=0.320 Sum_probs=155.5
Q ss_pred CCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEECCC-----cE---EEEEe-CCCCEEEEEEcC-CCCEEEEEEcCCCe
Q psy12365 10 EPHGPGDVYVCWQRRTGE-LLATTGRDSSVSIYNKHG-----KL---IDKIT-LPGLCIVMDWDS-EGDLLGIISSNSSA 78 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~~~-----~~---~~~~~-~~~~i~~i~~~~-d~~~l~~~~~~d~~ 78 (1324)
.+|...|.+++|+| ++. +|++++.||.|++|+... .. ...+. |.+.|.+++|+| ++..|++++. |+.
T Consensus 178 ~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-dg~ 255 (430)
T 2xyi_A 178 RGHQKEGYGLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-DQK 255 (430)
T ss_dssp ECCSSCCCCEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-TSE
T ss_pred cCCCCCeEEEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-CCe
Confidence 47899999999999 888 999999999999999843 11 23443 778999999999 6778888887 999
Q ss_pred EEEEEcCCC---eEEEEecCCCCCceEEEEecCCC-EEEE-----EEEEEeCC--CCeEEEEe-cCCcEEEEEEcCCCC-
Q psy12365 79 VNVWNTYTK---KRTIVDSGLRDPLTCLVWCKQCS-MLQL-----SVSIYNKH--GKLIDKIT-LPGLCIVMDWDSEGD- 145 (1324)
Q Consensus 79 i~iw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~-----~i~v~d~~--g~~~~~~~-~~~~i~~~~~~~~g~- 145 (1324)
|++||+.++ +....+..|...|++++|+|+++ ++++ .|++||.+ +.....+. |.+.|.+++|+|++.
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT
T ss_pred EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC
Confidence 999999876 45555668999999999999987 4555 89999987 34455554 889999999999996
Q ss_pred EEEEEEcCCCcEEEeeccc---------------C---------CCeeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc
Q psy12365 146 LLGIISSNSSAVNVWTLLT---------------Y---------TLGERISWSDDGQ-LLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~~---------------~---------~~i~~~~~s~~~~-~l~~~~~dg~i~~~~~~~~~ 198 (1324)
++++ ++.|+.|++||+.. . ..|++++|+|+++ ++++++.||.|++|++....
T Consensus 336 ~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 336 ILAS-SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEEE-EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEE-EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 6777 99999999999874 1 4699999999999 89999999999999976543
No 111
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=2.2e-16 Score=182.40 Aligned_cols=285 Identities=15% Similarity=0.115 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTL 725 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~ 725 (1324)
+++.|..+|..++..|++++|+..|.++.. .... ..+.+..+|.++...|++++|+..|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--------~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------- 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD--------GDPD-NYIAYYRRATVFLAMGKSKAALPDLTKV--------- 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHH---------
Confidence 457789999999999999999999887632 2222 4567789999999999999999977553
Q ss_pred HHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC---CCCCChhhHHhhhchH-------
Q psy12365 726 RRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELAT---PDIQDPECQRKCKEGI------- 795 (1324)
Q Consensus 726 ~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~---~~~~~~~~~~~~~~~l------- 795 (1324)
++. .+....++..+|.++...|++++|+..|++++...| . +...+..+
T Consensus 64 ----------~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 64 ----------IAL-----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-------EKEAESQLVKADEMQ 121 (359)
T ss_dssp ----------HHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-------HHHHHHHHHHHHHHH
T ss_pred ----------HHh-----CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-------hHHHHHHHHHHHHHH
Confidence 211 344568889999999999999999999999999988 5 23333333
Q ss_pred -----HHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHc
Q psy12365 796 -----ARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQL 857 (1324)
Q Consensus 796 -----a~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~ 857 (1324)
+.++...|++++|++.++++ +. ..++..+|.++...|++++|...|+++.. +..++.+|...
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 78999999999999999886 22 78899999999999999999999999865 66788999999
Q ss_pred CCHHHHHhhhhccC-----CHHHHH------------HHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHH
Q psy12365 858 KNWTKIGQLLPHIK-----SATTFI------------QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV 920 (1324)
Q Consensus 858 ~~~~~A~~~~~~~~-----~~~~~~------------~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~ 920 (1324)
|++++|...+++.. .+..+. ..|..+...|++++|+..|.++.+ .. ..++...
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~---~~~~~~~- 271 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK------TE---PSVAEYT- 271 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC---CSSHHHH-
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cC---CCchHHH-
Confidence 99999999887764 333333 337788999999999999988432 11 1222211
Q ss_pred HHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhc
Q psy12365 921 DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEED 999 (1324)
Q Consensus 921 ~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~ 999 (1324)
......+|.++...|++++|++.|.++ +. .|.++..+..+|..+...
T Consensus 272 --------~~~~~~la~~~~~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 272 --------VRSKERICHCFSKDEKPVEAIRICSEV------------------------LQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHHccCHHHHHHHHHHH------------------------HHhCcccHHHHHHHHHHHHHc
Confidence 123567899999999999999998877 22 556788999999888887
Q ss_pred CCHHHHHHHHHHh
Q psy12365 1000 KDMFRAAQYYYHA 1012 (1324)
Q Consensus 1000 g~~~~A~~~y~~~ 1012 (1324)
|++.+|...|.++
T Consensus 320 g~~~~A~~~~~~a 332 (359)
T 3ieg_A 320 EMYDEAIQDYEAA 332 (359)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777665
No 112
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.77 E-value=4.8e-17 Score=192.03 Aligned_cols=186 Identities=17% Similarity=0.276 Sum_probs=153.8
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEE------------------------------------
Q psy12365 9 EEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKI------------------------------------ 51 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~------------------------------------ 51 (1324)
..+|...|++++|+| +|++|++|+.||.|++||. +++.+..+
T Consensus 143 ~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 143 MEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp CCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred ecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce
Confidence 357888999999999 9999999999999999996 33332221
Q ss_pred -----e-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe----EEEEecCCCCCceEEEEecCCCE-EEE------
Q psy12365 52 -----T-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK----RTIVDSGLRDPLTCLVWCKQCSM-LQL------ 114 (1324)
Q Consensus 52 -----~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~-l~~------ 114 (1324)
. |...+..+.|+|+|..+++++. |+.|++|+..+++ .......|...|.+++|+|++.. +++
T Consensus 222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 222 HVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeEEecccccceeeeeecCCCCeeeeeec-cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 2 4456778889999999999998 9999999987653 23455679999999999998654 443
Q ss_pred -EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEE-EcCCCcEEEeecccC----------CCeeEEEEcCCCCEEE
Q psy12365 115 -SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGII-SSNSSAVNVWTLLTY----------TLGERISWSDDGQLLA 181 (1324)
Q Consensus 115 -~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~-~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~ 181 (1324)
+|++||.. |+....+.....+.++.|+|++..+++. +..|+.|+|||..+. ..|++++|+|||++|+
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 89999976 7777888888899999999999988872 237899999998732 6799999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q psy12365 182 VTTSGGSVKIYLSKL 196 (1324)
Q Consensus 182 ~~~~dg~i~~~~~~~ 196 (1324)
+|+.||+|++|++..
T Consensus 381 S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 381 SAAADETLRLWRCFE 395 (420)
T ss_dssp EEETTTEEEEECCSC
T ss_pred EEecCCeEEEEECCC
Confidence 999999999999753
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.76 E-value=1.6e-16 Score=189.09 Aligned_cols=181 Identities=13% Similarity=0.094 Sum_probs=151.3
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEECC-CcEEEEEe------CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNKH-GKLIDKIT------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~-~~~~~~~~------~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
...+.+++|+| ++.++++++.++.|++||.. |+....+. |.+.+.+++|+|++..+++++. |+.|++||..
T Consensus 122 ~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~v~~~d~~ 199 (433)
T 3bws_A 122 GFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-ANAVHVFDLK 199 (433)
T ss_dssp SSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-GTEEEEEETT
T ss_pred CCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-CCEEEEEECC
Confidence 34577899999 99999988889999999984 66554322 5678999999999998888877 9999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEc------
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISS------ 152 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~------ 152 (1324)
+++....+..|...+.+++|+|+++.+++ .|.+||.. ++....+...+.+.+++|+|+|+.+++ ++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~ 278 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI-AQFSASNQ 278 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE-EEEESCTT
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE-EECCCCcc
Confidence 88887777788889999999999998855 89999976 666677777788999999999999988 55
Q ss_pred --CCCcEEEeecccC---------CCeeEEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q psy12365 153 --NSSAVNVWTLLTY---------TLGERISWSDDGQLL-AVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 153 --~~~~i~iwd~~~~---------~~i~~~~~s~~~~~l-~~~~~dg~i~~~~~~~ 196 (1324)
.|+.|.+||+.+. ..+..++|+|+|+.+ ++++.+|.+.+|+...
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 5889999998732 567889999999865 5557899999999764
No 114
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.8e-17 Score=184.92 Aligned_cols=331 Identities=14% Similarity=0.071 Sum_probs=144.2
Q ss_pred HhhcHHHHHHHHHhhCCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHH
Q psy12365 630 KLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTA 709 (1324)
Q Consensus 630 ~~~~~~~A~~~~~~~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A 709 (1324)
..|++++|.++++..+++..|..||.++++.|++++|+.+|.++.|. ..+...+..+...|+|++|
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~--------------~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP--------------SSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH--------------HHHHHHHHHHHhCCCHHHH
Confidence 35679999999999999999999999999999999999999887554 3445556677789999999
Q ss_pred HHHHHhCCCh--HHH-----HHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC
Q psy12365 710 QQRYLTSDIP--TMA-----LTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDI 782 (1324)
Q Consensus 710 ~~~~~~~~~~--~~a-----~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~ 782 (1324)
+.+|..+.+. +.+ +.+|.++|+|+++.++.+. ++ ...+..+|..+...|+|++|+.+|.++-
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C-----------------CTTTHHHHHHHTT-------
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 9966655431 113 3488888888888777643 22 2477888888888888888888888761
Q ss_pred CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHHHHHhcC----HHHHHHHHHHcC
Q psy12365 783 QDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGN----YEKAATCYIQLK 858 (1324)
Q Consensus 783 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~----~~~~~~~~~~~~ 858 (1324)
.+..+|.++.++|+|++|++.++++.+..+|..++..+...|+++.|......... ...++..|.+.|
T Consensus 150 --------n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 150 --------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG 221 (449)
T ss_dssp --------CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred --------hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCC
Confidence 24457888888888888888888887788888888888888888888655544322 445667777777
Q ss_pred CHHHHHhhhhccC-----CHHHHHHHHHHHHH--cCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHH
Q psy12365 859 NWTKIGQLLPHIK-----SATTFIQYAKAKEA--MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG 931 (1324)
Q Consensus 859 ~~~~A~~~~~~~~-----~~~~~~~~a~~~~~--~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~ 931 (1324)
+|++|+.++++.. ...++..+|..|.+ -++..++++.|...-...+.+|.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~----------------------- 278 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA----------------------- 278 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH-----------------------
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH-----------------------
Confidence 7777777777665 34455556555543 34555666666554444444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccch----hHhhhhccCCCCCCHHHHHHHHHHHHhcCC--HHHH
Q psy12365 932 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL----HEFGKFLLEEDEPNPVELKRLAIHFEEDKD--MFRA 1005 (1324)
Q Consensus 932 ~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~----~~~~~~l~l~~~~~~~~~~~la~~~~~~g~--~~~A 1005 (1324)
+.+..-|.+++-+|.+.+.++.|.....+|... +.+.++ +....+.+.+++...+|....- +..-
T Consensus 279 -------~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~--~~kv~n~elyYkai~fyl~~~p~~l~~l 349 (449)
T 1b89_A 279 -------AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI--ITKVANVELYYRAIQFYLEFKPLLLNDL 349 (449)
T ss_dssp -------HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH--HHHCSSTHHHHHHHHHHHHHCGGGHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHH--HhchhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 444455666666666666666666666655421 333344 2244777888888877764431 1222
Q ss_pred HHHHHHhCCHHHHHHHHHhh
Q psy12365 1006 AQYYYHAKEYGRAMKLLLVT 1025 (1324)
Q Consensus 1006 ~~~y~~~g~~~~A~~~~~~~ 1025 (1324)
.......-++.+++.++.+.
T Consensus 350 l~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 350 LMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHhccCcHHHHHHHHHc
Confidence 22222345677777777775
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.76 E-value=7.2e-16 Score=180.47 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=139.8
Q ss_pred CEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEE
Q psy12365 27 ELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVW 105 (1324)
Q Consensus 27 ~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 105 (1324)
..+++++.++.|++||. +++.+..+.+...+.+++|+|+|+.+++++..|+.|++||..+++....+..+. .+.+++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 46777888999999998 567777777667799999999999886666449999999999998877765444 8999999
Q ss_pred ecCCCEEEE------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------CCee
Q psy12365 106 CKQCSMLQL------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------TLGE 169 (1324)
Q Consensus 106 s~~~~~l~~------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~ 169 (1324)
+|+|+.|++ .|.+||.. ++....+.+...+.+++|+|+|+.+++.++.++.|.+||..+. ..+.
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 161 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc
Confidence 999998765 89999987 6666777777889999999999988543888999999998732 5678
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q psy12365 170 RISWSDDGQLLA-VTTSGGSVKIYLSKL 196 (1324)
Q Consensus 170 ~~~~s~~~~~l~-~~~~dg~i~~~~~~~ 196 (1324)
.+.|+|+|+.++ +++.+|.|++|+...
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 899999998874 566788899998754
No 116
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.76 E-value=4.9e-17 Score=190.92 Aligned_cols=180 Identities=13% Similarity=0.222 Sum_probs=153.9
Q ss_pred CCCeeEEEEe----cCCCCE-EEEEeCCCcEEEEECC-------CcEEE-----EE-------e-CCCCEEEEEEcCCCC
Q psy12365 13 GPGDVYVCWQ----RRTGEL-LATTGRDSSVSIYNKH-------GKLID-----KI-------T-LPGLCIVMDWDSEGD 67 (1324)
Q Consensus 13 ~~~i~~~~~s----p~~g~~-l~~~~~~~~v~v~~~~-------~~~~~-----~~-------~-~~~~i~~i~~~~d~~ 67 (1324)
...|.+++|+ | ++++ |++++.||.|++||.. ++.+. .+ . +...+.+++|+|++
T Consensus 121 ~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 198 (397)
T 1sq9_A 121 KHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG- 198 (397)
T ss_dssp GSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred CCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-
Confidence 5889999999 9 9999 9999999999999974 34443 44 2 67889999999999
Q ss_pred EEEEEEcCCCeEEEEEcCCCeEEEEecC---C---CCCceEEEEecCCCEEEE--------EEEEEeCC-CCeEEEEe--
Q psy12365 68 LLGIISSNSSAVNVWNTYTKKRTIVDSG---L---RDPLTCLVWCKQCSMLQL--------SVSIYNKH-GKLIDKIT-- 130 (1324)
Q Consensus 68 ~l~~~~~~d~~i~iw~~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~l~~--------~i~v~d~~-g~~~~~~~-- 130 (1324)
.+++++. |+.|++||+.+++....+.. | ...+.+++|+|++.+|++ .|++||.. ++....+.
T Consensus 199 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 199 LIATGFN-NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp EEEEECT-TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred eEEEEeC-CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence 8888887 99999999999988888888 8 999999999999999988 48999975 66666665
Q ss_pred ------------cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc--------c-----------------------CCC
Q psy12365 131 ------------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL--------T-----------------------YTL 167 (1324)
Q Consensus 131 ------------~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~--------~-----------------------~~~ 167 (1324)
|.+.|.+++|+|+|++|++ ++.|+.|++||+. . ...
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEE-EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence 6789999999999999999 9999999999986 2 345
Q ss_pred eeEEEEcCCC----------CEEEEEeCCCcEEEEEcCC
Q psy12365 168 GERISWSDDG----------QLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 168 i~~~~~s~~~----------~~l~~~~~dg~i~~~~~~~ 196 (1324)
|++++|+|+| ++|++++.||.|++|++..
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred eeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999998 7999999999999999754
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.75 E-value=7.8e-16 Score=183.01 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=137.0
Q ss_pred CCCCCeeEEE---EecCCCCEEEEEeC--------------CC--cEEEEECCC---cEEEEEeCCCCEEEEEEcCCCCE
Q psy12365 11 PHGPGDVYVC---WQRRTGELLATTGR--------------DS--SVSIYNKHG---KLIDKITLPGLCIVMDWDSEGDL 68 (1324)
Q Consensus 11 ~h~~~i~~~~---~sp~~g~~l~~~~~--------------~~--~v~v~~~~~---~~~~~~~~~~~i~~i~~~~d~~~ 68 (1324)
....++..++ |+| +++.+.+.+. ++ .|..||..+ +.+..+.....+.+++|+|++..
T Consensus 58 ~~~~g~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 58 DKNIALVEMAIPVYKD-EKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRL 136 (433)
T ss_dssp ETTEEEEEEEEECCCT-TCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEE
T ss_pred ccCCccEEEEEeeccC-CCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeE
Confidence 3456678888 999 8777665432 22 444455433 45555656666779999995555
Q ss_pred EEEEEcCCCeEEEEEcCCCeEEEE-----ecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEE
Q psy12365 69 LGIISSNSSAVNVWNTYTKKRTIV-----DSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCI 136 (1324)
Q Consensus 69 l~~~~~~d~~i~iw~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~ 136 (1324)
+++++. ++.|++||..+++.... +.+|.+.+.+++|+|++..+++ .|++||.. ++....+. +...+.
T Consensus 137 ~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 137 AIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEEeCC-CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 555544 88999999998887763 3478889999999999998888 99999976 56666665 667899
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeC--------CCcEEEEEcC
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTS--------GGSVKIYLSK 195 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~--------dg~i~~~~~~ 195 (1324)
+++|+|+|..+++.++.++.|.+||+.+. ..+..+.|+|+|+.+++++. ||.|++|+..
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 99999999988663668999999998732 56888999999999888873 5566666653
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.75 E-value=1.8e-16 Score=181.59 Aligned_cols=183 Identities=14% Similarity=0.239 Sum_probs=157.8
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe---CCCCEEEEEEcCCC--CEEEEEEcCCCeEEEEEc
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT---LPGLCIVMDWDSEG--DLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~---~~~~i~~i~~~~d~--~~l~~~~~~d~~i~iw~~ 84 (1324)
..+...+....++| ++++|++++.|+.+++||..+....... |...+..++|++++ ..+++++. |+.|++||.
T Consensus 125 ~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~-d~~i~i~d~ 202 (340)
T 4aow_A 125 VGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNL 202 (340)
T ss_dssp ECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET-TSCEEEEET
T ss_pred cCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC-CCEEEEEEC
Confidence 35667788999999 9999999999999999998665544443 67889999999875 45677777 999999999
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEE
Q psy12365 85 YTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVN 158 (1324)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~ 158 (1324)
.+++....+.+|.+.|++++|+|++++|++ .|++||.. ++....+.+...+.++.|+|++.+++ ++.|+.|+
T Consensus 203 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~d~~i~ 280 (340)
T 4aow_A 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC--AATGPSIK 280 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE--EEETTEEE
T ss_pred CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee--ccCCCEEE
Confidence 999998889999999999999999999988 89999987 66677777888999999999987765 45689999
Q ss_pred EeecccC-------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 159 VWTLLTY-------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 159 iwd~~~~-------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+||++.. ..|++++|+|||++|++|+.||.|++|+++.
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 9998721 5689999999999999999999999999764
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.75 E-value=5.6e-16 Score=178.14 Aligned_cols=140 Identities=13% Similarity=0.169 Sum_probs=118.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC----eEEEEecCCCCCceEEEEec--CCCEEEE-----EEEEEeC
Q psy12365 53 LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK----KRTIVDSGLRDPLTCLVWCK--QCSMLQL-----SVSIYNK 121 (1324)
Q Consensus 53 ~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~-----~i~v~d~ 121 (1324)
|.+.|.+++|+|++++|++++. ||.|++||+.++ +....+.+|...|.+++|+| ++.+|++ .|++||.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEET-TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeC-CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 8899999999999999999998 999999999865 45666778999999999999 5888888 8999998
Q ss_pred CC----------CeEEEEe-cCCcEEEEEEcCC--CCEEEEEEcCCCcEEEeecccC-----------------------
Q psy12365 122 HG----------KLIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNVWTLLTY----------------------- 165 (1324)
Q Consensus 122 ~g----------~~~~~~~-~~~~i~~~~~~~~--g~~l~~~~~~~~~i~iwd~~~~----------------------- 165 (1324)
.. +....+. |.+.|.+++|+|+ +.++++ ++.|+.|++||+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 63 2233443 7889999999999 999999 999999999998622
Q ss_pred CCeeEEEEcCC---CCEEEEEeCCCcEEEEEc
Q psy12365 166 TLGERISWSDD---GQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 166 ~~i~~~~~s~~---~~~l~~~~~dg~i~~~~~ 194 (1324)
..+.++.|+|+ +..+++++.+|.+.+|+.
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 199 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG 199 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEEC
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEcc
Confidence 46778899987 888999998888866654
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.9e-17 Score=194.86 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=155.4
Q ss_pred CCCCCeeEEEEecCCCCEE-EEEeCCCcEEEEECC---CcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELL-ATTGRDSSVSIYNKH---GKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l-~~~~~~~~v~v~~~~---~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
+|.+.|.+++|+| +|++| ++++.||.|++||.. ++.+..+. +...|.+++|+|+|++|++++. ++.|++|+
T Consensus 100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~ 177 (450)
T 2vdu_B 100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSID 177 (450)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEE
T ss_pred ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEe
Confidence 5777899999999 99996 888899999999975 56666663 6788999999999999999998 99999999
Q ss_pred cCCCeEEE----EecCCCCCceEEEEecC---CCEEEE-----EEEEEeCC-CCeEEEEe--cCCcEEEEEEcCCCCEEE
Q psy12365 84 TYTKKRTI----VDSGLRDPLTCLVWCKQ---CSMLQL-----SVSIYNKH-GKLIDKIT--LPGLCIVMDWDSEGDLLG 148 (1324)
Q Consensus 84 ~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~-----~i~v~d~~-g~~~~~~~--~~~~i~~~~~~~~g~~l~ 148 (1324)
+.++.... .+.+|...|++++|+|+ +.+|++ .|++||.. ++....+. |.+.|.+++|+ +|.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 87765432 55679999999999999 888888 89999976 66565533 78899999999 999999
Q ss_pred EEEcCCCcEEEeecccC-----------------------------------CCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy12365 149 IISSNSSAVNVWTLLTY-----------------------------------TLGERISWSDDGQLLAVTT-SGGSVKIY 192 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~-----------------------------------~~i~~~~~s~~~~~l~~~~-~dg~i~~~ 192 (1324)
+ ++.|+.|++||+.+. ..|..+.|+|++++|++++ .++.|++|
T Consensus 257 s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 257 S-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp E-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred E-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9 999999999998732 1367899999999999998 89999999
Q ss_pred Ec
Q psy12365 193 LS 194 (1324)
Q Consensus 193 ~~ 194 (1324)
++
T Consensus 336 ~~ 337 (450)
T 2vdu_B 336 EM 337 (450)
T ss_dssp EE
T ss_pred Ee
Confidence 98
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.75 E-value=1.8e-16 Score=179.51 Aligned_cols=187 Identities=16% Similarity=0.268 Sum_probs=152.9
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEE----------------------------------
Q psy12365 7 TLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKI---------------------------------- 51 (1324)
Q Consensus 7 ~~~~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~---------------------------------- 51 (1324)
+...+|...|.+++|+| +|++|++|+.||+|++|+. +++.+..+
T Consensus 61 ~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 61 LQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp EECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC
Confidence 34467888999999999 9999999999999999996 33333221
Q ss_pred -------e-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe----EEEEecCCCCCceEEEEecCCCEEEE-----
Q psy12365 52 -------T-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK----RTIVDSGLRDPLTCLVWCKQCSMLQL----- 114 (1324)
Q Consensus 52 -------~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~----- 114 (1324)
. |...+..+.|+++++.+++++. |+.|++||+.+++ .......+.+.|.++.|+|++..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEec-CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 1 4456788999999999999998 9999999997653 22344568888999999998665442
Q ss_pred ---EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEE-EcCCCcEEEeecccC----------CCeeEEEEcCCCCE
Q psy12365 115 ---SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGII-SSNSSAVNVWTLLTY----------TLGERISWSDDGQL 179 (1324)
Q Consensus 115 ---~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~-~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~ 179 (1324)
.|++||.. +.......+...+..+.|+|++..+++. ++.|+.|++||+.+. ..|++++|+|||++
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred CCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 89999976 5556666688899999999999988762 347899999998732 68999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q psy12365 180 LAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 180 l~~~~~dg~i~~~~~~ 195 (1324)
|++++.||+|++|++.
T Consensus 299 l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 299 VASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEETTTEEEEECCS
T ss_pred EEEEecCCeEEEEECC
Confidence 9999999999999974
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.75 E-value=4.1e-17 Score=193.08 Aligned_cols=185 Identities=12% Similarity=0.216 Sum_probs=155.3
Q ss_pred cCCCCCCeeEEEEecCC-CCEEEEEeCCCcEEEEECC-----------CcEEEEEe-CCCCEEEEEEcCCCC-EEEEEEc
Q psy12365 9 EEPHGPGDVYVCWQRRT-GELLATTGRDSSVSIYNKH-----------GKLIDKIT-LPGLCIVMDWDSEGD-LLGIISS 74 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp~~-g~~l~~~~~~~~v~v~~~~-----------~~~~~~~~-~~~~i~~i~~~~d~~-~l~~~~~ 74 (1324)
..+|.+.|.+++|+| + +.+|++++.+|.|++|+.. +.....+. |.+.+.+++|+|++. .|++++.
T Consensus 124 ~~~h~~~v~~l~~~p-~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMP-QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEET-TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEcCCCcEEEEEECC-CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 347899999999999 7 7899999999999999974 35566666 888999999999998 8888887
Q ss_pred CCCeEEEEEcCCCeE-------EEEecCCCCCceEEEEec-CCCEEEE-----EEEEEeCCC----CeEEEE-ecCCcEE
Q psy12365 75 NSSAVNVWNTYTKKR-------TIVDSGLRDPLTCLVWCK-QCSMLQL-----SVSIYNKHG----KLIDKI-TLPGLCI 136 (1324)
Q Consensus 75 ~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~-----~i~v~d~~g----~~~~~~-~~~~~i~ 136 (1324)
||.|++|++.++.. ...+.+|...|.+++|+| ++..|++ .|++||.+. +....+ .|.+.|.
T Consensus 203 -dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 -DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp -TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred -CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999986321 345668999999999999 5677766 899999873 344444 4788999
Q ss_pred EEEEcCCCC-EEEEEEcCCCcEEEeecccC-----------CCeeEEEEcCCCC-EEEEEeCCCcEEEEEcCC
Q psy12365 137 VMDWDSEGD-LLGIISSNSSAVNVWTLLTY-----------TLGERISWSDDGQ-LLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 137 ~~~~~~~g~-~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~~~~-~l~~~~~dg~i~~~~~~~ 196 (1324)
+++|+|++. ++++ ++.||.|++||+++. ..|+++.|+|+++ +|++++.||.|++|++..
T Consensus 282 ~i~~~p~~~~~l~t-g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILAT-GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEE-EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEE-EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999997 6777 999999999998831 6799999999995 689999999999999865
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.74 E-value=1.4e-16 Score=182.74 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=140.8
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCc-EEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGK-LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~-~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
.+|.+.|.+++|+| ||++|++++.++ +++|+.+.. ......+ ..+..+.|.++++.+++++.+|+.|++||..+++
T Consensus 16 ~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp ---CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred ccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 57999999999999 999999888775 789997543 3322223 3578889999999887666558999999999998
Q ss_pred EEEEecCCCCCceEEEEecCCCEEEE--EEEEEeCCCC----------------------------------------e-
Q psy12365 89 RTIVDSGLRDPLTCLVWCKQCSMLQL--SVSIYNKHGK----------------------------------------L- 125 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~--~i~v~d~~g~----------------------------------------~- 125 (1324)
....+. +...|.++.|++++..++. .|++||.... .
T Consensus 93 ~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 93 DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC---
T ss_pred EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCc
Confidence 877664 6778999999887533333 5555554311 0
Q ss_pred ----------------EEEE-ecCCcEEEEEEcCCCCEEEEEEcCCCc-EEEeecccC------------CCeeEEEEcC
Q psy12365 126 ----------------IDKI-TLPGLCIVMDWDSEGDLLGIISSNSSA-VNVWTLLTY------------TLGERISWSD 175 (1324)
Q Consensus 126 ----------------~~~~-~~~~~i~~~~~~~~g~~l~~~~~~~~~-i~iwd~~~~------------~~i~~~~~s~ 175 (1324)
...+ .|.+.|.+++|+|+|.+|++ ++.|++ |++||+.+. ..|.+++|+|
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEEEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC
Confidence 1222 27788999999999999999 999998 999998722 4688999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q psy12365 176 DGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 176 ~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+|++|++++.||.|++|++..+
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCC
T ss_pred CCCEEEEEECCCEEEEEEccCC
Confidence 9999999999999999998764
No 124
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.74 E-value=1.5e-16 Score=187.61 Aligned_cols=187 Identities=11% Similarity=0.162 Sum_probs=157.5
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCC---CEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEG---DLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~---~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|...|.+++|+|.++.+|++++.||.|++||. +++....+.+...+.++.|+|.+ ..+++++. ++.|++||+.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR-GPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-SSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-CCeEEEEeCC
Confidence 3599999999999955679999999999999998 56677777788899999999854 48999888 9999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCE-EEE-----EEEEEeCCC-C-eEEEE----------------ecCCcEEEEEEc
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSM-LQL-----SVSIYNKHG-K-LIDKI----------------TLPGLCIVMDWD 141 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~-----~i~v~d~~g-~-~~~~~----------------~~~~~i~~~~~~ 141 (1324)
+++....+.+|...|.+++|+|+++. +++ .|++||.+. . ....+ .+.+.|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 88887888899999999999999984 655 899999862 2 22222 267789999999
Q ss_pred CCCCEEEEEEcCCCcEEEeecccC--------------------------------------------------------
Q psy12365 142 SEGDLLGIISSNSSAVNVWTLLTY-------------------------------------------------------- 165 (1324)
Q Consensus 142 ~~g~~l~~~~~~~~~i~iwd~~~~-------------------------------------------------------- 165 (1324)
|+|.++++ ++.|+.|++||+.+.
T Consensus 255 ~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 255 SDGLHLLT-VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp TTSSEEEE-EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CCCCEEEE-ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 99999999 999999999997620
Q ss_pred -CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 166 -TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 166 -~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
..|++++|+|+|++|++++.||.|++|++....
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 467889999999999999999999999987643
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=5.1e-16 Score=185.76 Aligned_cols=287 Identities=16% Similarity=0.113 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTL 725 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~ 725 (1324)
+...|..+|..+...|+++.|+.+|.++.. .... ....+..+|.++...|++++|+..|.++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--------~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------- 87 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVD--------GDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI-------- 87 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 356789999999999999999999987632 1222 45667889999999999999999876532
Q ss_pred HHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhh---HHh----------hh
Q psy12365 726 RRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPEC---QRK----------CK 792 (1324)
Q Consensus 726 ~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~---~~~----------~~ 792 (1324)
+ . .+....++..+|.++...|++++|+..|++++...|. .. ... ..
T Consensus 88 -----------~----~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 88 -----------Q----L-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-----ENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp -----------H----H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred -----------h----c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHHHH
Confidence 1 1 2445778899999999999999999999999999986 22 111 12
Q ss_pred chHHHHHHhcCCHHHHHHHHHhcC----C-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCC
Q psy12365 793 EGIARTSIRVGDFRLGIRLAAESN----S-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKN 859 (1324)
Q Consensus 793 ~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~ 859 (1324)
..+|.++.+.|++++|++.++++. . ..++..+|.+|...|++++|+..|+++.. +..++.+|...|+
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334777999999999999998862 2 78899999999999999999999999864 5677899999999
Q ss_pred HHHHHhhhhccC-----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHH
Q psy12365 860 WTKIGQLLPHIK-----SATTFIQY------------AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 922 (1324)
Q Consensus 860 ~~~A~~~~~~~~-----~~~~~~~~------------a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~ 922 (1324)
+++|+..+++.. ....+..+ |..+...|++++|+..|.++. .+. ..++...
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l------~~~---p~~~~~~--- 294 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM------KTE---PSIAEYT--- 294 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHC---CSSHHHH---
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcC---CcchHHH---
Confidence 999999988764 44444444 888899999999999998843 111 1222211
Q ss_pred HHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhcCC
Q psy12365 923 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKD 1001 (1324)
Q Consensus 923 ~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~ 1001 (1324)
...+..+|.++.+.|++++|+.+|.++ +. .|.++..+..+|..+...|+
T Consensus 295 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 295 ------VRSKERICHCFSKDEKPVEAIRVCSEV------------------------LQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp ------HHHHHHHHHHHHTTTCHHHHHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HHhCcccHHHHHHHHHHHHHhcC
Confidence 134678899999999999999998877 22 45678899999988887777
Q ss_pred HHHHHHHHHHh
Q psy12365 1002 MFRAAQYYYHA 1012 (1324)
Q Consensus 1002 ~~~A~~~y~~~ 1012 (1324)
+.+|...|.++
T Consensus 345 ~~~A~~~~~~a 355 (450)
T 2y4t_A 345 YDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.5e-17 Score=206.83 Aligned_cols=184 Identities=20% Similarity=0.287 Sum_probs=156.7
Q ss_pred CCCCCCeeEEEEecCC--CCEEEEEeCCCcEEEEECCCc---EEEEEe-CCCCEEEEEEcCC--CCEEEEEEcCCCeEEE
Q psy12365 10 EPHGPGDVYVCWQRRT--GELLATTGRDSSVSIYNKHGK---LIDKIT-LPGLCIVMDWDSE--GDLLGIISSNSSAVNV 81 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~--g~~l~~~~~~~~v~v~~~~~~---~~~~~~-~~~~i~~i~~~~d--~~~l~~~~~~d~~i~i 81 (1324)
.+|.+.|.+++|+| + |++|++++.||.|++||..+. ....+. |.+.|.+++|+|+ +..+++++. ||.|++
T Consensus 50 ~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-dg~I~v 127 (753)
T 3jro_A 50 TGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-DGKVSV 127 (753)
T ss_dssp CCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-TSEEEE
T ss_pred cCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-CCcEEE
Confidence 57999999999998 7 999999999999999998443 444444 7889999999999 999999998 999999
Q ss_pred EEcCCC--eEEEEecCCCCCceEEEEec-------------CCCEEEE-----EEEEEeCC-C----CeEEEEe-cCCcE
Q psy12365 82 WNTYTK--KRTIVDSGLRDPLTCLVWCK-------------QCSMLQL-----SVSIYNKH-G----KLIDKIT-LPGLC 135 (1324)
Q Consensus 82 w~~~~~--~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~-----~i~v~d~~-g----~~~~~~~-~~~~i 135 (1324)
||+.++ .......+|...|.++.|+| ++..+++ .|++||.+ + .....+. |.+.|
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 999766 23345568999999999999 4788877 89999976 3 2223332 78899
Q ss_pred EEEEEcCC---CCEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 136 IVMDWDSE---GDLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 136 ~~~~~~~~---g~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++++|+|+ |.++++ ++.||.|++||..+. ..|++++|+|+|+++++++.||.|++|+...
T Consensus 208 ~~l~~sp~~~~~~~l~s-~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLAS-VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEECCCCSSSEEEEE-EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEeccCCCCCCEEEE-EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999 899999 999999999998731 5688999999999999999999999999764
No 127
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.73 E-value=7.7e-17 Score=184.86 Aligned_cols=184 Identities=10% Similarity=-0.069 Sum_probs=154.2
Q ss_pred CCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEEC-CCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 10 EPHGPGDVYVCWQRRTGE-LLATTGRDSSVSIYNK-HGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~-~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
.+|...|.+++|+| +++ +|++++.||.|++||. .+.....+. |.+.|.+++|+| +..+++++. |+.|++||+
T Consensus 53 ~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-d~~i~iwd~ 129 (342)
T 1yfq_A 53 LRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW-DGLIEVIDP 129 (342)
T ss_dssp EECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET-TSEEEEECH
T ss_pred eecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC-CCeEEEEcc
Confidence 37889999999999 999 9999999999999998 765555554 678999999999 999999998 999999998
Q ss_pred CC---------CeEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCC--C-eE--EEEecCCcEEEEEEcC-CCC
Q psy12365 85 YT---------KKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHG--K-LI--DKITLPGLCIVMDWDS-EGD 145 (1324)
Q Consensus 85 ~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g--~-~~--~~~~~~~~i~~~~~~~-~g~ 145 (1324)
.+ ++....+. |...+.+++|+|++ +++. .|++||... . .. ....+...+.+++|+| +|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred cccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC
Confidence 76 54443443 88899999999988 3333 999999875 1 12 3334778999999999 999
Q ss_pred EEEEEEcCCCcEEEeecc-c------C---------C---------CeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q psy12365 146 LLGIISSNSSAVNVWTLL-T------Y---------T---------LGERISWSDDGQLLAVTTSGGSVKIYLSKLPKL 199 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~-~------~---------~---------~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~~ 199 (1324)
++++ ++.+|.|++|+++ . . . .|.+++|+|++++|++++.||.|++|+......
T Consensus 208 ~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 208 GYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 9999 9999999999985 2 1 2 899999999999999999999999999876543
No 128
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.3e-16 Score=182.86 Aligned_cols=180 Identities=9% Similarity=0.021 Sum_probs=146.8
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCc---EEEEEeC------------------------------------
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGK---LIDKITL------------------------------------ 53 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~---~~~~~~~------------------------------------ 53 (1324)
.++.+++|+| +|++|+++ .++.|++||. +|+ .+..+..
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999 99976655 5789999996 676 4444431
Q ss_pred -------------------CCCEEEEEEcCCCCEE-EEEEcCCCeEEEEEcC--CCeEEEEec--CCCCCceEEEEecCC
Q psy12365 54 -------------------PGLCIVMDWDSEGDLL-GIISSNSSAVNVWNTY--TKKRTIVDS--GLRDPLTCLVWCKQC 109 (1324)
Q Consensus 54 -------------------~~~i~~i~~~~d~~~l-~~~~~~d~~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~s~~~ 109 (1324)
.+.|.+++|+|+|++| ++++. |+.|++||+. ++.....+. .|...|.+++|+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADS-DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGG-GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECC-CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 1259999999999997 66656 9999999998 776666654 577889999999999
Q ss_pred CEEEE-----EEEEEeCC-CCeEE----E-EecCCcEEEEEEcCC---CCEEEEEEcCCCcEEEeecccC----------
Q psy12365 110 SMLQL-----SVSIYNKH-GKLID----K-ITLPGLCIVMDWDSE---GDLLGIISSNSSAVNVWTLLTY---------- 165 (1324)
Q Consensus 110 ~~l~~-----~i~v~d~~-g~~~~----~-~~~~~~i~~~~~~~~---g~~l~~~~~~~~~i~iwd~~~~---------- 165 (1324)
..|++ .+++|+.. ++... . ..|.+.|.+++|+|+ +.+|++ ++.|+.|++||+.+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEECCCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeeecCC
Confidence 99988 79999975 33221 2 237889999999999 999999 999999999998722
Q ss_pred -CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 166 -TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 166 -~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
..|++++|+ +|++|++++.||.|++|++....
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 578999999 99999999999999999987654
No 129
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=4.5e-16 Score=186.23 Aligned_cols=302 Identities=13% Similarity=0.030 Sum_probs=234.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHH
Q psy12365 623 ISLHKVLKLLNWKEAWNICAVL-----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCG 697 (1324)
Q Consensus 623 ~~~~~~l~~~~~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 697 (1324)
.....++..|++++|..+++.. .+...|..+|..+...|+++.|+..|.++... -.. ....+..+|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT-CHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC-cHHHHHHHH
Confidence 3455678899999999998865 56899999999999999999999999876322 122 455678899
Q ss_pred HHHHHcCCHHHHHHHHHhCCC--hHHH--HHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 698 HVAALLGNHDTAQQRYLTSDI--PTMA--LTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQK 773 (1324)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~--~~~a--~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~ 773 (1324)
.++..+|++++|+..|.++.. |... ...+..+..... ...+..+|..+...|++++|+..|++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE-------------MQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999987532 1111 011111111110 11235667889999999999999999
Q ss_pred hcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--
Q psy12365 774 SMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVLKNECADILQQFNKLNDAVTLYESAGN-- 846 (1324)
Q Consensus 774 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-- 846 (1324)
++...|. +...+..++.+|.+.|++++|++.++++. + ..++..+|.++...|++++|+.+|+++..
T Consensus 169 ~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 169 ILEVCVW-------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHCTT-------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCC-------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999887 45667779999999999999999998872 2 88999999999999999999999999854
Q ss_pred ------H------------HHHHHHHHHcCCHHHHHhhhhccC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 847 ------Y------------EKAATCYIQLKNWTKIGQLLPHIK-----S----ATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 847 ------~------------~~~~~~~~~~~~~~~A~~~~~~~~-----~----~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
+ ...+.++...|++++|+.++++.. + ..++..+|.++...|++++|+..|.++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 122788999999999999998774 2 336778899999999999999999984
Q ss_pred hChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhcc
Q psy12365 900 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL 979 (1324)
Q Consensus 900 ~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~ 979 (1324)
. .+ .+.+..+...+|.++...|++++|+..|.++
T Consensus 322 ~------~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------------ 355 (450)
T 2y4t_A 322 L------QM----------------EPDNVNALKDRAEAYLIEEMYDEAIQDYETA------------------------ 355 (450)
T ss_dssp H------HH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------
T ss_pred H------Hh----------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------------
Confidence 3 11 1134456788999999999999999999887
Q ss_pred CC-CCCCHHHHHHHHHHHHhc
Q psy12365 980 EE-DEPNPVELKRLAIHFEED 999 (1324)
Q Consensus 980 l~-~~~~~~~~~~la~~~~~~ 999 (1324)
+. .|.++..+..++......
T Consensus 356 l~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 356 QEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HTTSSSCHHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHHHHHHh
Confidence 33 566778888888655443
No 130
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.73 E-value=1.3e-15 Score=176.53 Aligned_cols=117 Identities=12% Similarity=0.189 Sum_probs=95.2
Q ss_pred cEEEEEe-CCCCEEEEEEcCC---CCEEEEEEcCCCeEEEEEcCC-Ce-EEEEecCCCCCceEEEEecCCCEEEE-----
Q psy12365 46 KLIDKIT-LPGLCIVMDWDSE---GDLLGIISSNSSAVNVWNTYT-KK-RTIVDSGLRDPLTCLVWCKQCSMLQL----- 114 (1324)
Q Consensus 46 ~~~~~~~-~~~~i~~i~~~~d---~~~l~~~~~~d~~i~iw~~~~-~~-~~~~~~~~~~~v~~~~~s~~~~~l~~----- 114 (1324)
+.+..+. |.+.|.+++|+|+ |++|++++. ||.|++||+.+ +. ....+.+|...|.+++|+|++++|++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW-ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEET-TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECC-CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3444444 8899999999999 599999998 99999999986 44 33677789999999999999999988
Q ss_pred EEEEEeCC-CCeEEEEecCCcEEEEEE--cCCCCEEEEEEcCCCcEEEeeccc
Q psy12365 115 SVSIYNKH-GKLIDKITLPGLCIVMDW--DSEGDLLGIISSNSSAVNVWTLLT 164 (1324)
Q Consensus 115 ~i~v~d~~-g~~~~~~~~~~~i~~~~~--~~~g~~l~~~~~~~~~i~iwd~~~ 164 (1324)
.|++||.. ++......|.+.|.++.| +|++.++++ ++.|+.|++||+++
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT-GSWDKTLKFWDTRS 160 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEE-EETTSEEEEECSSC
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEE-ccCCCcEEEEECCC
Confidence 89999987 445555557788888888 778877877 77788888888763
No 131
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=1.5e-15 Score=175.40 Aligned_cols=301 Identities=12% Similarity=0.013 Sum_probs=233.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHH
Q psy12365 623 ISLHKVLKLLNWKEAWNICAVL-----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCG 697 (1324)
Q Consensus 623 ~~~~~~l~~~~~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 697 (1324)
..-..++..|++++|...++.. .++..|..+|..+...|+++.|+..|.++... ... ....+..+|
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT-CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC-cchHHHHHH
Confidence 3345678899999999998865 56889999999999999999999998876322 222 456678999
Q ss_pred HHHHHcCCHHHHHHHHHhCCChH----HHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 698 HVAALLGNHDTAQQRYLTSDIPT----MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQK 773 (1324)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~~~----~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~ 773 (1324)
.++...|++++|...|.++.+.. .-...+..++....+ .....+|..+...|++++|++.|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-------------QRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-------------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999998753211 112222222222111 1235568999999999999999999
Q ss_pred hcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHHHHccCHHHHHHHHHHhcCH-
Q psy12365 774 SMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADILQQFNKLNDAVTLYESAGNY- 847 (1324)
Q Consensus 774 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~- 847 (1324)
++...|. +...+..++.++...|++++|++.+++... ..++..+|.++...|++++|...|+++...
T Consensus 146 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 146 ILEVCVW-------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCC-------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999997 456677799999999999999999988732 889999999999999999999999998641
Q ss_pred -------------------HHHHHHHHHcCCHHHHHhhhhccC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 848 -------------------EKAATCYIQLKNWTKIGQLLPHIK-----SA----TTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 848 -------------------~~~~~~~~~~~~~~~A~~~~~~~~-----~~----~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
...+.++...|++++|+..+++.. ++ .++..+|.++...|++++|+..|.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 298 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 123677999999999999988765 33 34556899999999999999999984
Q ss_pred hChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhcc
Q psy12365 900 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL 979 (1324)
Q Consensus 900 ~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~ 979 (1324)
. .+ .+.+..+...+|.++...|++++|++.|.++
T Consensus 299 ~------~~----------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a------------------------ 332 (359)
T 3ieg_A 299 L------QM----------------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA------------------------ 332 (359)
T ss_dssp H------HH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------
T ss_pred H------Hh----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------
Confidence 3 21 1134456788999999999999999999987
Q ss_pred CC-CCCCHHHHHHHHHHHHh
Q psy12365 980 EE-DEPNPVELKRLAIHFEE 998 (1324)
Q Consensus 980 l~-~~~~~~~~~~la~~~~~ 998 (1324)
+. .|.++..+..++..+..
T Consensus 333 ~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 333 QEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHH
Confidence 33 55667777777765443
No 132
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=3.2e-15 Score=180.23 Aligned_cols=314 Identities=12% Similarity=0.045 Sum_probs=179.3
Q ss_pred hhcHHHHHHHHHhh---CCHHHHHHHHHHHHh----cCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHH-
Q psy12365 631 LLNWKEAWNICAVL---NQSETWRSFAEACLQ----NLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAAL- 702 (1324)
Q Consensus 631 ~~~~~~A~~~~~~~---~~~~~~~~l~~~~l~----~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~- 702 (1324)
.+++++|+..++.. .++..+..||..+.. .++++.|+.+|.++-+. . ..+....+|.++..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~-~~~a~~~Lg~~y~~g 124 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----------G-LPQAQQNLGVMYHEG 124 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------T-CHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------C-CHHHHHHHHHHHHcC
Confidence 45666666665533 556666666666666 66666666666654211 1 23444556666665
Q ss_pred ---cCCHHHHHHHHHhCC---ChH---HHHHHHHH----HhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH----cCCHH
Q psy12365 703 ---LGNHDTAQQRYLTSD---IPT---MALTLRRD----LRQWREALALATSLGSNQTPIISCDYAQQLEM----TGQHA 765 (1324)
Q Consensus 703 ---~g~~~~A~~~~~~~~---~~~---~a~~~~~~----~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~ 765 (1324)
.+++++|+..|.++. .++ ....+|.. .+++++|+..+++....+.+..+..+|.+|.. .++++
T Consensus 125 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 125 NGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHH
Confidence 566666666665532 111 11123333 34555555555543333444555555555555 55555
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHh----cCCHHHHHHHHHhcCC---hHHHHHHHHHHHH----ccCH
Q psy12365 766 QALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR----VGDFRLGIRLAAESNS---SVLKNECADILQQ----FNKL 834 (1324)
Q Consensus 766 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~---~~~~~~l~~~~~~----~g~~ 834 (1324)
+|+.+|+++..... ..+...++.+|.. .+++++|++++++..+ ..+...+|.++.. .+++
T Consensus 205 ~A~~~~~~a~~~~~---------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 205 ISAQWYRKSATSGD---------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp HHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Confidence 55555555554322 2233345555554 4555555555555422 4555555555555 5555
Q ss_pred HHHHHHHHHhcC------HHHHHHHHHHc-----CCHHHHHhhhhccC---CHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy12365 835 NDAVTLYESAGN------YEKAATCYIQL-----KNWTKIGQLLPHIK---SATTFIQYAKAKEAMG---SYRESVGAYE 897 (1324)
Q Consensus 835 ~~A~~~y~~~~~------~~~~~~~~~~~-----~~~~~A~~~~~~~~---~~~~~~~~a~~~~~~g---~~~~A~~~y~ 897 (1324)
++|+.+|+++.+ ...++.+|... +++++|+.++++.. .+..+..+|.++...| ++++|+++|+
T Consensus 276 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 276 LKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 555555555533 22344444444 55555555554433 4445555555555444 4555555555
Q ss_pred HhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH----cCCHHHHHHHHHHcCCHHHHHHHHHhccchhH
Q psy12365 898 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 973 (1324)
Q Consensus 898 ~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~ 973 (1324)
++- +..+.++.+.+|.+|.. .+++++|+++|.++
T Consensus 356 ~a~------------------------~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A------------------ 393 (490)
T 2xm6_A 356 KAA------------------------AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA------------------ 393 (490)
T ss_dssp HHH------------------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------------
T ss_pred HHH------------------------HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------------
Confidence 422 12456778889999999 89999999999887
Q ss_pred hhhhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhC
Q psy12365 974 FGKFLLEEDEPNPVELKRLAIHFEE----DKDMFRAAQYYYHAK 1013 (1324)
Q Consensus 974 ~~~~l~l~~~~~~~~~~~la~~~~~----~g~~~~A~~~y~~~g 1013 (1324)
. ...++.++..+|.+|.. .+++.+|..+|.++-
T Consensus 394 ------~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 394 ------A-EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp ------H-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ------H-hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 1 11457889999999988 889999999988873
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.7e-16 Score=189.04 Aligned_cols=286 Identities=11% Similarity=0.020 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..++..|++++|+.+|.++.... . ....+..+|.++...|++++|+..|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p-~~~~~~~la~~~~~~g~~~~A~~~~~~a---------- 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---------E-DPVFYSNLSACYVSVGDLKKVVEMSTKA---------- 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---------c-cHHHHHhHHHHHHHHhhHHHHHHHHHHH----------
Confidence 4678999999999999999999998764321 1 2456788899999999999999977553
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCC----------------------
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQD---------------------- 784 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------------------- 784 (1324)
++ . .+....++..+|.++...|++++|+..|++++...|.....
T Consensus 66 ---------l~----~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 66 ---------LE----L-KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp ---------HH----H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred ---------hc----c-ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 34556788899999999999999999999998877631000
Q ss_pred --------------------------------------------------hhhHHhhhchHHHHHHh---cCCHHHHHHH
Q psy12365 785 --------------------------------------------------PECQRKCKEGIARTSIR---VGDFRLGIRL 811 (1324)
Q Consensus 785 --------------------------------------------------~~~~~~~~~~la~~~~~---~g~~~~A~~~ 811 (1324)
...+...+..++.++.. .|++++|+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 00012333445555554 8999999988
Q ss_pred HHhcCC-------------------hHHHHHHHHHHHHccCHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHh
Q psy12365 812 AAESNS-------------------SVLKNECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQ 865 (1324)
Q Consensus 812 ~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~ 865 (1324)
++++.. ..++..+|..+...|++++|+.+|+++.. +..++.+|...|++++|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHH
Confidence 776422 45778899999999999999999998753 4556788889999999988
Q ss_pred hhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHH
Q psy12365 866 LLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCN 940 (1324)
Q Consensus 866 ~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~ 940 (1324)
.+++.. .+.++..+|.++...|++++|+..|.++.+. . ..+..+...+|.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~----------~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL------------D----------PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT------------C----------SSCSHHHHHHHHHTT
T ss_pred HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------C----------hhhHHHHHHHHHHHH
Confidence 887654 5678888899999999999999999884311 0 123345667777777
Q ss_pred HcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 941 KHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 941 ~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
..|++++|+..|.++ +. .+..+..+..+|..+...|++.+|...|.++
T Consensus 350 ~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 350 RENKFDDCETLFSEA------------------------KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTTCHHHHHHHHHHH------------------------HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH------------------------HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888887777665 11 3345567777777777777777777666554
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=6.9e-16 Score=189.43 Aligned_cols=308 Identities=13% Similarity=0.041 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCC-----hH-
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDI-----PT- 720 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~-----~~- 720 (1324)
...|..+|..+...|+++.|+.+|.++.. .-.. ....+..+|.++..+|++++|++.|.++.. +.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--------LDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh--------hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH
Confidence 56789999999999999999999987632 2223 456778999999999999999999877421 11
Q ss_pred --HHHHHHHHHhhHHHHHHHHHhcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC--CCh-hh-------
Q psy12365 721 --MALTLRRDLRQWREALALATSLGS-NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDI--QDP-EC------- 787 (1324)
Q Consensus 721 --~a~~~~~~~~~~~~Al~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~--~~~-~~------- 787 (1324)
....+|...|++++|+..++.... +... ......+...+...+|+..|++++...|... ..+ ..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLSLNGDFD---GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 223445566666666665543211 1111 1112233344445556666666655433210 000 00
Q ss_pred --------------------HHhhhchHHHH--------HHhcCCHHHHHHHHHhcCC------------hHHHHHHHHH
Q psy12365 788 --------------------QRKCKEGIART--------SIRVGDFRLGIRLAAESNS------------SVLKNECADI 827 (1324)
Q Consensus 788 --------------------~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~------------~~~~~~l~~~ 827 (1324)
.......++.. ....|++++|+++++++.. ..++..+|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 00011122222 2233588899988887733 2357788899
Q ss_pred HHHccCHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 828 LQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGA 895 (1324)
Q Consensus 828 ~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~ 895 (1324)
+...|++++|+..|+++.. +..++.+|...|++++|+..+++.. .+.++..+|.++...|++++|+..
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999998864 4566788888999999999887764 677888899999999999999999
Q ss_pred HHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhh
Q psy12365 896 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFG 975 (1324)
Q Consensus 896 y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~ 975 (1324)
|.++.. +. +....+...+|.++...|++++|++.|.++
T Consensus 333 ~~~a~~------~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------------- 370 (537)
T 3fp2_A 333 FQKAQS------LN----------------PENVYPYIQLACLLYKQGKFTESEAFFNET-------------------- 370 (537)
T ss_dssp HHHHHH------HC----------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHH------hC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 988431 11 133455778999999999999999988876
Q ss_pred hhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 976 KFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 976 ~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+. .|.++..+..+|..+...|++.+|...|.++
T Consensus 371 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 371 ----KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp ----HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11 4466788889999999999999998888765
No 135
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.6e-16 Score=180.10 Aligned_cols=176 Identities=13% Similarity=0.112 Sum_probs=142.1
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCC----------cEEEEEe--CCCCEEEEEEcC--CCCEEEEEEcCCCeE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHG----------KLIDKIT--LPGLCIVMDWDS--EGDLLGIISSNSSAV 79 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~----------~~~~~~~--~~~~i~~i~~~~--d~~~l~~~~~~d~~i 79 (1324)
..|.++.|+| + +++++.|++|++|+..+ +.+..+. |.+.|.+++|+| +++++++++. |+.|
T Consensus 77 ~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i 151 (343)
T 3lrv_A 77 PNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN-RGTI 151 (343)
T ss_dssp ECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET-TCCE
T ss_pred CCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC-CCcE
Confidence 4566777888 5 88999999999997653 3244444 557899999999 9999999998 9999
Q ss_pred EEEEcCCCeEEEEec-CCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeE-EEEe--cCCcEEEEEEcCCCCEEEE
Q psy12365 80 NVWNTYTKKRTIVDS-GLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLI-DKIT--LPGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 80 ~iw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~-~~~~--~~~~i~~~~~~~~g~~l~~ 149 (1324)
++||+.+++...... .+...+.+++|+|+|.+|++ .|++||.+ ++.. ..+. |.+.|.+++|+|+|.+|++
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence 999999888766553 45567999999999999998 89999987 4444 4444 6889999999999999999
Q ss_pred EEcCCCcEEEeecccC-------------CCee--EEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q psy12365 150 ISSNSSAVNVWTLLTY-------------TLGE--RISWSDDGQLLAVTTS-GGSVKIYLSKL 196 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~-------------~~i~--~~~~s~~~~~l~~~~~-dg~i~~~~~~~ 196 (1324)
++ ++.|++||+++. ..+. +++|+|+|++|++++. |+.+++|+...
T Consensus 232 -~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 232 -EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp -EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred -Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 77 459999999832 1122 4999999999999998 99999999754
No 136
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.71 E-value=3.2e-16 Score=182.70 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=132.1
Q ss_pred cCCCCCCeeEEEEec-------CCCCEEEEEeCCCcEEEEEC-CCcEEE-EEeCCCCEEEEEEcCCCC-EEEEEEcCCCe
Q psy12365 9 EEPHGPGDVYVCWQR-------RTGELLATTGRDSSVSIYNK-HGKLID-KITLPGLCIVMDWDSEGD-LLGIISSNSSA 78 (1324)
Q Consensus 9 ~~~h~~~i~~~~~sp-------~~g~~l~~~~~~~~v~v~~~-~~~~~~-~~~~~~~i~~i~~~~d~~-~l~~~~~~d~~ 78 (1324)
..+|.+.|.+++|+| .||++||+++.|++|+|||. ++.... .+.|...+.+++|+|++. +|++++. |++
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-d~~ 210 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER-NGN 210 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET-TSE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC-CCE
Confidence 468999999999987 26889999999999999997 444444 444889999999999885 6888877 999
Q ss_pred EEEEEcCCCeEEE-------------------------EecCCCCCceEEEEe-cCCCEEEE-----EEEEEeCC-CCeE
Q psy12365 79 VNVWNTYTKKRTI-------------------------VDSGLRDPLTCLVWC-KQCSMLQL-----SVSIYNKH-GKLI 126 (1324)
Q Consensus 79 i~iw~~~~~~~~~-------------------------~~~~~~~~v~~~~~s-~~~~~l~~-----~i~v~d~~-g~~~ 126 (1324)
|++||+.+++... ...+|...+.++.|+ |+|..+++ ++++||+. ++..
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~ 290 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY 290 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence 9999998764321 123577889999997 78998888 99999976 2222
Q ss_pred EEEe-cC------------------CcEEEEEEcC-CCC-EEEEEEcCCCcEEEeecccC----------CCeeEEEEcC
Q psy12365 127 DKIT-LP------------------GLCIVMDWDS-EGD-LLGIISSNSSAVNVWTLLTY----------TLGERISWSD 175 (1324)
Q Consensus 127 ~~~~-~~------------------~~i~~~~~~~-~g~-~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~ 175 (1324)
..+. +. .......|+| .+. ++++ ++.|+.|++||..+. ..|.+++|+|
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA-HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE-ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE-ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence 2221 11 1222233444 333 5555 889999999998832 6799999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q psy12365 176 DGQLLAVTTSGGSVKIYL 193 (1324)
Q Consensus 176 ~~~~l~~~~~dg~i~~~~ 193 (1324)
||++||+++.+|. .+|.
T Consensus 370 dG~~LA~as~~Gv-~lvr 386 (393)
T 4gq1_A 370 DGSHLAIATEGSV-LLTR 386 (393)
T ss_dssp TSSEEEEEESSEE-EEEE
T ss_pred CCCEEEEEeCCCe-EEEE
Confidence 9999999998774 4444
No 137
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.71 E-value=1.2e-15 Score=177.73 Aligned_cols=180 Identities=12% Similarity=0.155 Sum_probs=132.9
Q ss_pred CCeeEEEEe---cCCCCEEEEEeCCCcEEEEECC--------C---cEEEEEeCCCCEEEEEEc----------------
Q psy12365 14 PGDVYVCWQ---RRTGELLATTGRDSSVSIYNKH--------G---KLIDKITLPGLCIVMDWD---------------- 63 (1324)
Q Consensus 14 ~~i~~~~~s---p~~g~~l~~~~~~~~v~v~~~~--------~---~~~~~~~~~~~i~~i~~~---------------- 63 (1324)
....++.|. | ++..++.++.++.|.+|+.. + ..+..+.+...+..+.|+
T Consensus 16 ~~p~~~~w~~~~~-~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSP-SCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSG-GGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCC-CCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 446678884 4 44444445567889999741 1 122233344555555554
Q ss_pred ----CCCCEEEEEEcCCCeEEEEEcCCCeEEE-----EecCCCCCceEEEEec--------CCCEEEE-----EEEEEeC
Q psy12365 64 ----SEGDLLGIISSNSSAVNVWNTYTKKRTI-----VDSGLRDPLTCLVWCK--------QCSMLQL-----SVSIYNK 121 (1324)
Q Consensus 64 ----~d~~~l~~~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~s~--------~~~~l~~-----~i~v~d~ 121 (1324)
+++..+++++. |++|++||..++.... .+.+|.+.|++++|+| +|++|++ +|++||.
T Consensus 95 ~~~~~~~~~las~~~-d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQ-DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp --CCEEEEEEEEEET-TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eecCCCCCEEEEEeC-CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 34557888888 9999999998875432 3568999999999998 7889988 9999997
Q ss_pred C-C-CeEEEEecCCcEEEEEEcCCCC-EEEEEEcCCCcEEEeecccC---------------------------------
Q psy12365 122 H-G-KLIDKITLPGLCIVMDWDSEGD-LLGIISSNSSAVNVWTLLTY--------------------------------- 165 (1324)
Q Consensus 122 ~-g-~~~~~~~~~~~i~~~~~~~~g~-~l~~~~~~~~~i~iwd~~~~--------------------------------- 165 (1324)
. + .......+.+.+.+++|+|++. +|++ ++.|++|++||+.+.
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIV-GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEE-EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEe-cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 5 3 3445556889999999999885 6777 999999999998722
Q ss_pred --CCeeEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q psy12365 166 --TLGERISWS-DDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 166 --~~i~~~~~s-~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
..+.++.|+ |||..|++++.|+.+++|++..
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 346677776 7999999999999999998754
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.70 E-value=2.3e-14 Score=189.55 Aligned_cols=175 Identities=10% Similarity=0.023 Sum_probs=129.3
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcC-----CCeEEEEEc
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSN-----SSAVNVWNT 84 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~-----d~~i~iw~~ 84 (1324)
.+...+..++||| +.|++++. +.|++|+..|.....+. |.+.+.+++|||||++|++++.. +..|++|+.
T Consensus 12 ~~~~~~~~~~~S~---~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~ 87 (1045)
T 1k32_A 12 CMPNLLLNPDIHG---DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 87 (1045)
T ss_dssp -CCCCCEEEEEET---TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred cccceEeCcEEeC---CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC
Confidence 3556789999998 48887775 78999999776666666 88899999999999999988652 347999999
Q ss_pred CCCeEEEEecCCCCCc-------eEEEEecCCCEEEE-----------EEEEEeCCCCeEEEEecCCcEEEEEEcCCCCE
Q psy12365 85 YTKKRTIVDSGLRDPL-------TCLVWCKQCSMLQL-----------SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDL 146 (1324)
Q Consensus 85 ~~~~~~~~~~~~~~~v-------~~~~~s~~~~~l~~-----------~i~v~d~~g~~~~~~~~~~~i~~~~~~~~g~~ 146 (1324)
.+++.. .++.|...+ ..++|+|||+++++ .|+.|+..+.....+.. +....++|+| | +
T Consensus 88 ~~g~~~-~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~sp-G-~ 163 (1045)
T 1k32_A 88 ENGEIK-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GPATHILFAD-G-R 163 (1045)
T ss_dssp TTTEEE-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CSCSEEEEET-T-E
T ss_pred CCCCeE-EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-CCcceeeeCC-C-E
Confidence 988754 557788777 89999999996555 37888887665555443 2345677999 8 6
Q ss_pred EEEEEcC------------CCcEEEeecc----------cCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 147 LGIISSN------------SSAVNVWTLL----------TYTLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 147 l~~~~~~------------~~~i~iwd~~----------~~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
+++ ++. +....+|... ....+.++.|+++ .++++++.+|.+.+|...
T Consensus 164 l~~-~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~ 232 (1045)
T 1k32_A 164 RVI-GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTD 232 (1045)
T ss_dssp EEE-EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEE
T ss_pred EEE-eccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEe
Confidence 666 532 2345566432 1267889999988 666777788888888754
No 139
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-16 Score=180.57 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=144.6
Q ss_pred CCCCCCeeEEEEec-CCCCEEEEEeCCCcEEEEEC-CCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 10 EPHGPGDVYVCWQR-RTGELLATTGRDSSVSIYNK-HGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp-~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
.+|.+.|.+++|+| .+++++++++.||+|++||. +++...... +...+.+++|+|||.+|++++. ||.|++||+.
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-DGILDVYNLS 200 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-TSCEEEEESS
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-CCEEEEEECC
Confidence 36778899999998 36889999999999999998 556655443 4567999999999999999988 9999999999
Q ss_pred CCeEE-EEecC-CCCCceEEEEecCCCEEEE----EEEEEeCC-CCeEEEEe----cCCcE--EEEEEcCCCCEEEEEEc
Q psy12365 86 TKKRT-IVDSG-LRDPLTCLVWCKQCSMLQL----SVSIYNKH-GKLIDKIT----LPGLC--IVMDWDSEGDLLGIISS 152 (1324)
Q Consensus 86 ~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~----~i~v~d~~-g~~~~~~~----~~~~i--~~~~~~~~g~~l~~~~~ 152 (1324)
+++.. ..+.+ |.+.|++++|+|+|.+|++ .|++||++ ++....+. +...+ .+++|+|+|+++++ ++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~s 279 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA-YS 279 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE-EE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE-ec
Confidence 88765 56677 9999999999999999988 89999987 33322221 11222 46999999999999 66
Q ss_pred C-CCcEEEeecccC------CCeeEEEEcC---CCCEEEEEeCCCcEEEEEc
Q psy12365 153 N-SSAVNVWTLLTY------TLGERISWSD---DGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 153 ~-~~~i~iwd~~~~------~~i~~~~~s~---~~~~l~~~~~dg~i~~~~~ 194 (1324)
. ++.+++|++.+. .++..+.|++ ++..+++++.||.+.++..
T Consensus 280 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEe
Confidence 6 999999998633 3455688998 8899999999999988754
No 140
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=8.6e-15 Score=176.47 Aligned_cols=300 Identities=10% Similarity=0.039 Sum_probs=222.5
Q ss_pred hCCHHHHHHHHHHHHh----cCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHH----cCCHHHHHHHHHh
Q psy12365 644 LNQSETWRSFAEACLQ----NLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAAL----LGNHDTAQQRYLT 715 (1324)
Q Consensus 644 ~~~~~~~~~l~~~~l~----~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~ 715 (1324)
..++.....+|..+.. .++++.|+..|+++-+. . ..+..+.+|.++.. .+++++|...|.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------G-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4677888999999998 89999999999876321 2 45677889999999 9999999999987
Q ss_pred CC---ChH---HHHHHHHH----HhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHhcccCCCC
Q psy12365 716 SD---IPT---MALTLRRD----LRQWREALALATSLGSNQTPIISCDYAQQLEM----TGQHAQALSFYQKSMELATPD 781 (1324)
Q Consensus 716 ~~---~~~---~a~~~~~~----~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~y~~al~~~~~~ 781 (1324)
+. .+. ....+|.. .+++++|+..+++....+.+..+..+|.+|.. .+++++|+++|+++.+...
T Consensus 105 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~-- 182 (490)
T 2xm6_A 105 AALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN-- 182 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--
Confidence 53 222 12234555 56778887777775555667777888888877 7788888888888776422
Q ss_pred CCChhhHHhhhchHHHHHHh----cCCHHHHHHHHHhcC---ChHHHHHHHHHHHH----ccCHHHHHHHHHHhcC----
Q psy12365 782 IQDPECQRKCKEGIARTSIR----VGDFRLGIRLAAESN---SSVLKNECADILQQ----FNKLNDAVTLYESAGN---- 846 (1324)
Q Consensus 782 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~A~~~y~~~~~---- 846 (1324)
..++..++.+|.. .+++++|++++++.. +..++..+|.+|.. .+++++|..+|+++.+
T Consensus 183 -------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 183 -------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp -------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred -------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 4455567777777 778888888777762 36777778888776 7788888888887654
Q ss_pred --HHHHHHHHHH----cCCHHHHHhhhhccC---CHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhChHHHHHHHHhc
Q psy12365 847 --YEKAATCYIQ----LKNWTKIGQLLPHIK---SATTFIQYAKAKEAM-----GSYRESVGAYERAEDYDNVVRVDLDH 912 (1324)
Q Consensus 847 --~~~~~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~a~~~~~~-----g~~~~A~~~y~~a~~~~~a~~~~~~~ 912 (1324)
...++.+|.. .+++++|+.++++.. ++.+...+|.++... +++++|+..|.++-+
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~----------- 324 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE----------- 324 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-----------
Confidence 3445566666 677777777776654 666777777777776 777777777777331
Q ss_pred cCCHHHHHHHHHHhcChHHHHHHHHHHHHcC---CHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHH
Q psy12365 913 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHG---DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL 989 (1324)
Q Consensus 913 ~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g---~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~ 989 (1324)
....++...+|.+|...| ++++|+++|.++ . ...++..+
T Consensus 325 -------------~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a------------------------~-~~~~~~a~ 366 (490)
T 2xm6_A 325 -------------QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKA------------------------A-AKGEKAAQ 366 (490)
T ss_dssp -------------TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH------------------------H-HTTCHHHH
T ss_pred -------------cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH------------------------H-HCCCHHHH
Confidence 134456778999998877 789999988877 1 11567899
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHh
Q psy12365 990 KRLAIHFEE----DKDMFRAAQYYYHA 1012 (1324)
Q Consensus 990 ~~la~~~~~----~g~~~~A~~~y~~~ 1012 (1324)
+.+|..|.. .+++.+|..+|.++
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999 88999999998876
No 141
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.3e-15 Score=171.49 Aligned_cols=269 Identities=10% Similarity=0.006 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
+..+..++..+...|+++.|+..|.++. ..-.. ..+.+..++.++...|++++|...|.++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--------- 83 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVM--------EKDPF-HASCLPVHIGTLVELNKANELFYLSHKLV--------- 83 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHH---------
Confidence 3445556666666666666666665432 11112 23344455666666666666666554421
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTG-QHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 805 (1324)
. ..+..+.++..+|..+...| ++++|+.+|++++...|. ....+..++.++...|++
T Consensus 84 ----------~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 84 ----------D-----LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-------YGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp ----------H-----HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-------CTHHHHHHHHHHHHHTCH
T ss_pred ----------H-----hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHHccCH
Confidence 0 11223445555555555555 555555555555555554 233344455555555555
Q ss_pred HHHHHHHHhcC----C-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-
Q psy12365 806 RLGIRLAAESN----S-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK- 871 (1324)
Q Consensus 806 ~~A~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~- 871 (1324)
++|++.++++. + ...+..+|..+...|++++|..+|+++.. +..++.+|...|++++|+..+++..
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 55555555441 1 34455555555555555555555555543 3344555555555555555554332
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHH
Q psy12365 872 -------------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY 938 (1324)
Q Consensus 872 -------------~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~ 938 (1324)
...++..+|.++...|++++|+..|.++.+ +. ..+..+...+|.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~----------------~~~~~~~~~la~~ 279 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV------LI----------------PQNASTYSAIGYI 279 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HS----------------TTCSHHHHHHHHH
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------hC----------------ccchHHHHHHHHH
Confidence 346888999999999999999999998432 11 1345667889999
Q ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHH-hcCC
Q psy12365 939 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFE-EDKD 1001 (1324)
Q Consensus 939 ~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~-~~g~ 1001 (1324)
+...|++++|+++|.++ +. .|.++..+..++..++ ..|+
T Consensus 280 ~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTA------------------------LGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHTCHHHHHHHHHTT------------------------TTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHhccHHHHHHHHHHH------------------------HccCCCchHHHHHHHHHHHHHhCc
Confidence 99999999999999988 44 6678899999998874 3443
No 142
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.69 E-value=2e-15 Score=176.93 Aligned_cols=184 Identities=19% Similarity=0.196 Sum_probs=147.2
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCC---cEEEEECC-CcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCC--eEEEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDS---SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS--AVNVWN 83 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~---~v~v~~~~-~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~--~i~iw~ 83 (1324)
+|...+.+++||| ||+.|++++.++ .|++||.. |+.. .+. +.+.+.+++|+|||+.|++++..++ .|++||
T Consensus 176 ~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d 253 (415)
T 2hqs_A 176 RSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 253 (415)
T ss_dssp EESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEE
Confidence 4777899999999 999999999875 99999984 5544 444 7788999999999999986554344 599999
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCCEEEE--------EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcC-
Q psy12365 84 TYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL--------SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSN- 153 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~- 153 (1324)
+.+++.. .+..|...+.+++|+|+|+.|++ .|++||..+.....+. +...+.+++|+|||++|++.+..
T Consensus 254 ~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 332 (415)
T 2hqs_A 254 LASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 332 (415)
T ss_dssp TTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcC
Confidence 9988764 45678888999999999998876 6888898755444443 55678899999999999983333
Q ss_pred -CCcEEEeecccC--------CCeeEEEEcCCCCEEEEEeCCC---cEEEEEcCCC
Q psy12365 154 -SSAVNVWTLLTY--------TLGERISWSDDGQLLAVTTSGG---SVKIYLSKLP 197 (1324)
Q Consensus 154 -~~~i~iwd~~~~--------~~i~~~~~s~~~~~l~~~~~dg---~i~~~~~~~~ 197 (1324)
+..|.+||..+. ..+.++.|+|||++|++++.++ .|++|++...
T Consensus 333 g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 333 GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 358999998732 4688999999999999888776 6888887643
No 143
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.69 E-value=1.1e-14 Score=172.91 Aligned_cols=132 Identities=9% Similarity=0.315 Sum_probs=95.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeE
Q psy12365 53 LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLI 126 (1324)
Q Consensus 53 ~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~ 126 (1324)
+...|.++.| |++.+++++. ||.|++||..+++....+.+|.+.|.+++| ++..|++ .|++||.. ++..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLR-DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEES-SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCcEEEEEE--CCCEEEEEeC-CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 4466888766 7899999998 999999999999888888899999998888 6677776 78888865 5555
Q ss_pred EEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-------------CCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy12365 127 DKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY-------------TLGERISWSDDGQLLAVTTSGGSVKIY 192 (1324)
Q Consensus 127 ~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-------------~~i~~~~~s~~~~~l~~~~~dg~i~~~ 192 (1324)
..+. |.+.|.++.|++ ..+++ ++.|+.|++||+.+. ..|.++.| +++++++++.||.|++|
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEE-EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEcCCCCcEEEEEEcC--CEEEE-eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 5554 566777777753 46666 777777777776522 34445555 45556666666666655
Q ss_pred Ec
Q psy12365 193 LS 194 (1324)
Q Consensus 193 ~~ 194 (1324)
+.
T Consensus 282 d~ 283 (435)
T 1p22_A 282 NT 283 (435)
T ss_dssp ET
T ss_pred EC
Confidence 54
No 144
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.69 E-value=1.2e-15 Score=175.04 Aligned_cols=179 Identities=15% Similarity=0.257 Sum_probs=147.4
Q ss_pred CeeEEEEecCCCCEEE-EEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCC--------------------------
Q psy12365 15 GDVYVCWQRRTGELLA-TTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEG-------------------------- 66 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~-~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~-------------------------- 66 (1324)
++..+++++ +++.++ +++.+++|++||. +++.+..+.+...|.++.|++++
T Consensus 60 ~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 60 HLSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp CCCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred CeEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence 578899999 888875 5667889999997 67888888888889999998763
Q ss_pred ---------CEEEEE-EcCCCeEEEEEcCCCe----------------EEEEecCCCCCceEEEEecCCCEEEE-----E
Q psy12365 67 ---------DLLGII-SSNSSAVNVWNTYTKK----------------RTIVDSGLRDPLTCLVWCKQCSMLQL-----S 115 (1324)
Q Consensus 67 ---------~~l~~~-~~~d~~i~iw~~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~-----~ 115 (1324)
..++++ +..+|.|++||+.++. ....+.+|.+.|++++|+|+|++|++ +
T Consensus 139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 234443 2337889999987654 14567899999999999999999998 6
Q ss_pred -EEEEeCC-CCeEEEEe---cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-------------------------
Q psy12365 116 -VSIYNKH-GKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY------------------------- 165 (1324)
Q Consensus 116 -i~v~d~~-g~~~~~~~---~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~------------------------- 165 (1324)
|++||.. ++....+. |.+.|.+++|+|+|++|++ ++.|++|++||+...
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s-~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV-VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEE-EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEE-EECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9999986 88888887 8899999999999999999 999999999998621
Q ss_pred --------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 166 --------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 166 --------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.....++|++||+.+++++.||.+++|++.
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 012678999999999999999999999864
No 145
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.69 E-value=6.3e-15 Score=172.38 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=154.3
Q ss_pred CCCeeEEEEecCCCCEE-EEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 13 GPGDVYVCWQRRTGELL-ATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l-~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
...+.+++|+| +|+++ ++++.++.|++||. +++.+..+.+...+.+++|+|||+.+++++..++.|++||..+++..
T Consensus 31 ~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~ 109 (391)
T 1l0q_A 31 GSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109 (391)
T ss_dssp SSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE
Confidence 35589999999 99987 55668999999997 67788888877799999999999999877765799999999999887
Q ss_pred EEecCCCCCceEEEEecCCCEEE-E-----EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc
Q psy12365 91 IVDSGLRDPLTCLVWCKQCSMLQ-L-----SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL 163 (1324)
Q Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~-~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~ 163 (1324)
..+..+ ..+.+++|+|+|+.++ + .|.+||.. ++....+.....+..++|+|+|+.+++.++.++.|.+||..
T Consensus 110 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 110 GTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 776544 4689999999999874 4 89999976 66677777777889999999999885537889999999987
Q ss_pred cC---------CCeeEEEEcCCCCEEEEEe---CCCcEEEEEcCCC
Q psy12365 164 TY---------TLGERISWSDDGQLLAVTT---SGGSVKIYLSKLP 197 (1324)
Q Consensus 164 ~~---------~~i~~~~~s~~~~~l~~~~---~dg~i~~~~~~~~ 197 (1324)
+. ..+..+.|+|+|+++++++ .++.|.+|+....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 32 5678899999999999888 6899999998754
No 146
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.6e-15 Score=172.65 Aligned_cols=256 Identities=9% Similarity=0.000 Sum_probs=200.9
Q ss_pred ccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHH
Q psy12365 689 EEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQAL 768 (1324)
Q Consensus 689 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 768 (1324)
..+....+|..+...|++++|+++|.++. . .. +.....+..++..+...|++++|+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-------------------~----~~-p~~~~~~~~~~~~~~~~~~~~~A~ 76 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVM-------------------E----KD-PFHASCLPVHIGTLVELNKANELF 76 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----HC-TTCTTTHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------H----cC-CCChhhHHHHHHHHHHhhhHHHHH
Confidence 56677888999999999999999775521 1 12 333455677888999999999999
Q ss_pred HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC-CHHHHHHHHHhcCC-----hHHHHHHHHHHHHccCHHHHHHHHH
Q psy12365 769 SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG-DFRLGIRLAAESNS-----SVLKNECADILQQFNKLNDAVTLYE 842 (1324)
Q Consensus 769 ~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~y~ 842 (1324)
..+++++...|. +...+..++.++...| ++++|++.++++.. ..++..+|.++...|++++|+..|+
T Consensus 77 ~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 77 YLSHKLVDLYPS-------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHHHHCTT-------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCcC-------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999987 4556677999999999 99999999988732 7889999999999999999999999
Q ss_pred HhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHH
Q psy12365 843 SAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD 909 (1324)
Q Consensus 843 ~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~ 909 (1324)
++.. +..++.+|...|++++|+.++++.. ++.++..+|.++...|++++|+..|.++ +.+.
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~ 223 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA------LEKI 223 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH------HHHh
Confidence 9864 5567899999999999999988764 6788899999999999999999999983 3333
Q ss_pred HhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHH
Q psy12365 910 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVE 988 (1324)
Q Consensus 910 ~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~ 988 (1324)
........ ......+...+|.++...|++++|+.+|.++ +. .|.++..
T Consensus 224 ~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------~~~~~~~~~~ 272 (330)
T 3hym_B 224 KAIGNEVT-------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQA------------------------LVLIPQNAST 272 (330)
T ss_dssp TTTSCSCT-------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHSTTCSHH
T ss_pred hhcccccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------------HhhCccchHH
Confidence 22111100 0133456788999999999999999999877 11 3456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 989 LKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 989 ~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+..+|..+...|++.+|..+|.++
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 888887766666655555555543
No 147
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.68 E-value=6.9e-14 Score=168.84 Aligned_cols=176 Identities=8% Similarity=0.023 Sum_probs=144.0
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc--CCCeEEEEecCC
Q psy12365 20 CWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT--YTKKRTIVDSGL 96 (1324)
Q Consensus 20 ~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~--~~~~~~~~~~~~ 96 (1324)
.++| ++.++++.+.+++|.+||. +++++..+.....+.+++|+|||+++++++. |+.|.+||+ .+++....+. +
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-d~~V~v~D~~~~t~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIK-I 220 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEE-C
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC-CCeEEEEECcCCCCcEEEEEe-c
Confidence 4899 9999999999999999997 6788888884444899999999999999998 899999999 7787766665 4
Q ss_pred CCCceEEEEec----CCCEEEE------EEEEEeCC-CCeEEEEec------------CCcEEEEEEcCCCCEEEEEEcC
Q psy12365 97 RDPLTCLVWCK----QCSMLQL------SVSIYNKH-GKLIDKITL------------PGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 97 ~~~v~~~~~s~----~~~~l~~------~i~v~d~~-g~~~~~~~~------------~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
...+..++|+| +|+++++ +|.+||.. ++.+..+.. ...+..+.++|++..+++....
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 45689999999 9999887 89999965 666666653 2268899999988766554788
Q ss_pred CCcEEEeecccC-----------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc
Q psy12365 154 SSAVNVWTLLTY-----------TLGERISWSDDGQLLAVTT-SGGSVKIYLSKLPK 198 (1324)
Q Consensus 154 ~~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~~ 198 (1324)
++.|.+||..+. ..+..+.|+|||+++++++ .+++|.+||.....
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe
Confidence 999999998732 3466789999999877665 58899999987644
No 148
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=1.2e-15 Score=170.21 Aligned_cols=342 Identities=13% Similarity=0.067 Sum_probs=155.2
Q ss_pred hcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHH
Q psy12365 659 QNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALAL 738 (1324)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~ 738 (1324)
+.|++++|...+.++. .++.|..+|..+...|++++|++.|.++.++.
T Consensus 15 ~~~~ld~A~~fae~~~--------------~~~vWs~La~A~l~~g~~~eAIdsfika~D~~------------------ 62 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------------EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPS------------------ 62 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHH------------------
Confidence 4456777777766552 46788999999999999999999997754322
Q ss_pred HHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCCh
Q psy12365 739 ATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSS 818 (1324)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 818 (1324)
.+...+..++..|+|++|+.+|+.+.+..++ ......++.+|.++|++++++++++. +..
T Consensus 63 -----------~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~--------~~i~~~Li~~Y~Klg~l~e~e~f~~~-pn~ 122 (449)
T 1b89_A 63 -----------SYMEVVQAANTSGNWEELVKYLQMARKKARE--------SYVETELIFALAKTNRLAELEEFING-PNN 122 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTTC-C--
T ss_pred -----------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc--------chhHHHHHHHHHHhCCHHHHHHHHcC-CcH
Confidence 3345555667788999999988888765332 33344578889999999998888865 445
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 819 VLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 898 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 898 (1324)
..|..+|+.+...|+|++|..+|.++..+.+++.++.++|+|++|++.+++..++..+.....++...|+++.|..+..+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp --------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999888888888887888888888888443322
Q ss_pred hhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH-----HHH---Hhc--
Q psy12365 899 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF-----NLS---QQH-- 968 (1324)
Q Consensus 899 a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~-----~l~---~~~-- 968 (1324)
....++.. ..+..+|.+.|++++|+.+|.++...++|. +++ .++
T Consensus 203 -------------L~~~ad~l-------------~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 203 -------------IVVHADEL-------------EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp -------------TTTCHHHH-------------HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred -------------HHhCHhhH-------------HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence 12233322 235567888888888888888776554441 111 111
Q ss_pred cchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhcccC
Q psy12365 969 KKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDENLWLGVSIVSDSHD 1048 (1324)
Q Consensus 969 ~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 1048 (1324)
+.+.+.-++ - ...-..-.+.+..++..-|.++..+|.+-++|+.|+....+.... . .+ -....+++.+..+
T Consensus 257 ~k~~ehl~~--~---~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~-a-~~--~~~f~~~~~kv~n 327 (449)
T 1b89_A 257 QKMREHLEL--F---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD-A-WK--EGQFKDIITKVAN 327 (449)
T ss_dssp HHHHHHHHH--H---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT-T-CC--HHHHHHHHHHCSS
T ss_pred HHHHHHHHH--H---HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh-h-hh--hHHHHHHHhchhH
Confidence 011111111 0 000112245667778888999999999999999999988886431 1 11 1334555667778
Q ss_pred HHHHHHHHHhhccccCCCCCChHHHHHHHHhccCHHHHHHHH
Q psy12365 1049 EKLVETFKTLLEGKLDGVKRNPKFLYRVLMNTGDYVAASSCA 1090 (1324)
Q Consensus 1049 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~y~~~~~~~~A~~~~ 1090 (1324)
.+++-+.+.|++++ .|.....|.......=++..+++.+
T Consensus 328 ~elyYkai~fyl~~---~p~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 328 VELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp THHHHHHHHHHHHH---CGGGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHhccCcHHHHHHH
Confidence 88888888888854 5555555555554445676666643
No 149
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.65 E-value=5.3e-15 Score=173.24 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=135.1
Q ss_pred CCEEEEEeCC------CcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCC---CeEEEEEcCCCeEEEEecC
Q psy12365 26 GELLATTGRD------SSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNS---SAVNVWNTYTKKRTIVDSG 95 (1324)
Q Consensus 26 g~~l~~~~~~------~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d---~~i~iw~~~~~~~~~~~~~ 95 (1324)
+..+++++.+ +.|++||.+|.....+. |.+.+.+++|+|||+.|++++. + ..|++||+.+++... +..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~-~~~~~~i~~~d~~tg~~~~-l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGAVRQ-VAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEEC-TTSSCEEEEEETTTCCEEE-EEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEe-cCCCcEEEEEECCCCcEEE-eec
Confidence 6777777654 79999999887666666 7889999999999999999987 5 499999999887764 457
Q ss_pred CCCCceEEEEecCCCEEEE--------EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCC--cEEEeeccc
Q psy12365 96 LRDPLTCLVWCKQCSMLQL--------SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS--AVNVWTLLT 164 (1324)
Q Consensus 96 ~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~--~i~iwd~~~ 164 (1324)
|...+.+++|+|+|+.|+. .|++||..+.....+. +.+.+.+++|+|||+.|++.+..++ .|.+||..+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 8888999999999998874 6999998744444443 6678999999999999988333355 566667662
Q ss_pred C---------CCeeEEEEcCCCCEEEEEeCC---CcEEEEEcCCC
Q psy12365 165 Y---------TLGERISWSDDGQLLAVTTSG---GSVKIYLSKLP 197 (1324)
Q Consensus 165 ~---------~~i~~~~~s~~~~~l~~~~~d---g~i~~~~~~~~ 197 (1324)
. ..+..+.|+|||++|++++.+ +.|.+|+....
T Consensus 301 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 301 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 2 457789999999999988764 57888887653
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.63 E-value=4.7e-14 Score=180.37 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=137.5
Q ss_pred CCCeeEEEEecCCCCEEEEEeC-CC-----cEEEEECC-CcEEEEEeC-C------------------------CCEEEE
Q psy12365 13 GPGDVYVCWQRRTGELLATTGR-DS-----SVSIYNKH-GKLIDKITL-P------------------------GLCIVM 60 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~-~~-----~v~v~~~~-~~~~~~~~~-~------------------------~~i~~i 60 (1324)
...+.+++||| ||++|++++. ++ .|++||.. |+....+.. . ..+.++
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45689999999 9999999998 87 89999984 455444442 1 237889
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEEcCCC---eEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEecCC
Q psy12365 61 DWDSEGDLLGIISSNSSAVNVWNTYTK---KRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITLPG 133 (1324)
Q Consensus 61 ~~~~d~~~l~~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~~~ 133 (1324)
+|||||++|++++. +.|++||+.++ ... .+..+...+..++|||||+.|++ .|++||..+.....+...+
T Consensus 115 ~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG--GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp EECTTSSEEEEEET--TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred EECCCCCEEEEEeC--CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence 99999999999874 99999999887 544 34567788999999999999887 8999998865555554222
Q ss_pred c------------------EEEEEEcCCCCEEEEEEcCCC---------------------------------cEEEeec
Q psy12365 134 L------------------CIVMDWDSEGDLLGIISSNSS---------------------------------AVNVWTL 162 (1324)
Q Consensus 134 ~------------------i~~~~~~~~g~~l~~~~~~~~---------------------------------~i~iwd~ 162 (1324)
. +..+.|||||++|++ ++.++ .|.+||.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~-~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY-ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE-EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEE-EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 1 477999999999998 65443 6788887
Q ss_pred cc-C------------CCeeEEEEcCCCCEEEEEeC-----CCcEEEEEcCC
Q psy12365 163 LT-Y------------TLGERISWSDDGQLLAVTTS-----GGSVKIYLSKL 196 (1324)
Q Consensus 163 ~~-~------------~~i~~~~~s~~~~~l~~~~~-----dg~i~~~~~~~ 196 (1324)
.+ . ..+..+.| |||++|++++. ++.|.+|+...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~ 321 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS 321 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC
Confidence 65 3 24678999 99999987754 45577777654
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=2e-14 Score=172.91 Aligned_cols=173 Identities=14% Similarity=0.010 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...+..||.++...|++++|+.+|+++.+.................+..+|.++..+|++++|+.+|.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k----------- 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK----------- 119 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH-----------
Confidence 567889999999999999999999987543111000000000122356889999999999999997654
Q ss_pred HHHhhHHHHHHHHHhcC---CCCchHHHHHHHHHHHHc--CCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHH-
Q psy12365 727 RDLRQWREALALATSLG---SNQTPIISCDYAQQLEMT--GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSI- 800 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~--g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~- 800 (1324)
|+.+.+... ....+.++...|..+... ++|++|+++|++++..+|+ +...+.+++.++.
T Consensus 120 --------a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-------~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 120 --------VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-------NPEFTSGLAIASYR 184 (472)
T ss_dssp --------HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHH
T ss_pred --------HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHH
Confidence 444444322 234567788888766554 5799999999999999997 3344445555543
Q ss_pred --hcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHH----ccCHHHHHHHHHHhc
Q psy12365 801 --RVGDFRLGIRLAAES----NS-SVLKNECADILQQ----FNKLNDAVTLYESAG 845 (1324)
Q Consensus 801 --~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~----~g~~~~A~~~y~~~~ 845 (1324)
..++.++|++.++++ ++ ..++..+|..+.. .|++++|..+|+++.
T Consensus 185 l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 557778888877765 22 5666666665544 456777777777654
No 152
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2e-14 Score=169.09 Aligned_cols=298 Identities=13% Similarity=0.106 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|++++|+.+|.++...... .... ....+..+|.++...|++++|...|.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~----------- 72 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKT-LSAIYSQLGNAYFYLHDYAKALEYHHH----------- 72 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----cHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHH-----------
Confidence 456788999999999999999999876432100 0000 134567899999999999999997654
Q ss_pred HHHhhHHHHHHHHHhcC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC-
Q psy12365 727 RDLRQWREALALATSLG-SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD- 804 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 804 (1324)
|+.+++... ++....++..+|.++...|++++|+.+|++++...+... +.......+..++.+|...|+
T Consensus 73 --------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 73 --------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCc
Confidence 344443322 233456788999999999999999999999988765310 112335577889999999999
Q ss_pred -------------------HHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------
Q psy12365 805 -------------------FRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDAVTLYESAGN-------- 846 (1324)
Q Consensus 805 -------------------~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------- 846 (1324)
+++|++++++... ..++..+|.++..+|++++|..+|+++..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 9999888776522 45788999999999999999999999864
Q ss_pred ------HHHHHHHHHHcCCHHHHHhhhhccC-----C------HHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHH
Q psy12365 847 ------YEKAATCYIQLKNWTKIGQLLPHIK-----S------ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD 909 (1324)
Q Consensus 847 ------~~~~~~~~~~~~~~~~A~~~~~~~~-----~------~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~ 909 (1324)
+..++.+|...|++++|+.++++.. . ..++..+|.++...|++++|+.+|.+ ++.+.
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------a~~~~ 297 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH------HHHHH
Confidence 4556788999999999999887764 1 45777889999999999999999998 44444
Q ss_pred HhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHH
Q psy12365 910 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL 989 (1324)
Q Consensus 910 ~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~ 989 (1324)
.. .++.... ..+...+|.+|...|++++|+++|.++ +.++.+.+. .+....++
T Consensus 298 ~~-~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~-----------~~~~~~~~ 350 (406)
T 3sf4_A 298 QE-LNDRIGE---------GRACWSLGNAYTALGNHDQAMHFAEKH------LEISREVGD-----------KSGELTAR 350 (406)
T ss_dssp HH-TTCHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHTTC-----------HHHHHHHH
T ss_pred Hh-cCCcHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcC-----------CcchhHHH
Confidence 43 2222211 234678999999999999999998876 333332211 11234667
Q ss_pred HHHHHHHHhcCCH
Q psy12365 990 KRLAIHFEEDKDM 1002 (1324)
Q Consensus 990 ~~la~~~~~~g~~ 1002 (1324)
..+|..+...|+.
T Consensus 351 ~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 351 LNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHh
Confidence 7778777776654
No 153
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=6.1e-15 Score=170.93 Aligned_cols=285 Identities=11% Similarity=0.016 Sum_probs=173.3
Q ss_pred HHHhcCCHHHHHH-HHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHH
Q psy12365 656 ACLQNLEFSWAIR-AYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWRE 734 (1324)
Q Consensus 656 ~~l~~~~~~~A~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~ 734 (1324)
.+...++++.|+. .|.++...... .-.. ....++.+|.++...|++++|+..|.++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~----~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al----------------- 91 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEE----NPLR-DHPQPFEEGLRRLQEGDLPNAVLLFEAAV----------------- 91 (368)
T ss_dssp ------------CHHHHCCCCCCSS----CTTT-TCSSHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCC----Cccc-chHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------
Confidence 3445577888887 77755432110 0000 13456788999999999999999876642
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHh
Q psy12365 735 ALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAE 814 (1324)
Q Consensus 735 Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 814 (1324)
...+....++..+|.++...|++++|+..|++++...|. +...+..++.++...|++++|++.+++
T Consensus 92 -------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 92 -------QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-------NQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp -------HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112334455666666666666666666666666666665 344455566666666666666666655
Q ss_pred cC----C-hHHHH----------------HHHHHHHHccCHHHHHHHHHHhcC----------HHHHHHHHHHcCCHHHH
Q psy12365 815 SN----S-SVLKN----------------ECADILQQFNKLNDAVTLYESAGN----------YEKAATCYIQLKNWTKI 863 (1324)
Q Consensus 815 ~~----~-~~~~~----------------~l~~~~~~~g~~~~A~~~y~~~~~----------~~~~~~~~~~~~~~~~A 863 (1324)
+. + ...+. .++.++ ..|++++|+.+|+++.. +..++.+|...|++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 41 1 11111 345554 66667777766666532 33455666666777777
Q ss_pred HhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHH
Q psy12365 864 GQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY 938 (1324)
Q Consensus 864 ~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~ 938 (1324)
+..+++.. .+.++..+|.++...|++++|+..|.++.. + .+....+...+|.+
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~----------------~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE------L----------------QPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------H----------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------h----------------CCCcHHHHHHHHHH
Confidence 66665543 577888999999999999999999998432 1 11344567889999
Q ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 939 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 939 ~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+.+.|++++|+.+|.++ +.+....... .. -..+.....+..+|..|...|++++|...+.+
T Consensus 295 ~~~~g~~~~A~~~~~~a------l~~~~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 295 CINLGAHREAVEHFLEA------LNMQRKSRGP--RG----EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHTCHHHHHHHHHHH------HHHHHTC------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHH------HHhCCCCCCc--cc----cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999998876 2221111000 00 00234478899999988888888888777663
No 154
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=2.5e-14 Score=165.78 Aligned_cols=278 Identities=9% Similarity=-0.048 Sum_probs=205.8
Q ss_pred HHHhhcHHHHHH-HHHhh-----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHH
Q psy12365 628 VLKLLNWKEAWN-ICAVL-----N----QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCG 697 (1324)
Q Consensus 628 ~l~~~~~~~A~~-~~~~~-----~----~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 697 (1324)
+.-.+++++|++ .+... . +...|..+|..+...|++++|+..|.++... ... ....+..+|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~~l~ 105 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPK-HMEAWQYLG 105 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC-CHHHHHHHH
Confidence 344578888887 66633 1 2456899999999999999999999876322 222 456678899
Q ss_pred HHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q psy12365 698 HVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMEL 777 (1324)
Q Consensus 698 ~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~ 777 (1324)
.++...|++++|+..|.++ +.. .+....++..+|.++...|++++|+..|++++..
T Consensus 106 ~~~~~~g~~~~A~~~~~~a-------------------l~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 106 TTQAENEQELLAISALRRC-------------------LEL-----KPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHH-------------------Hhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999977653 221 2445678899999999999999999999999999
Q ss_pred CCCCCCChhhHHhhhc--------------hHHHHHHhcCCHHHHHHHHHhc----C---ChHHHHHHHHHHHHccCHHH
Q psy12365 778 ATPDIQDPECQRKCKE--------------GIARTSIRVGDFRLGIRLAAES----N---SSVLKNECADILQQFNKLND 836 (1324)
Q Consensus 778 ~~~~~~~~~~~~~~~~--------------~la~~~~~~g~~~~A~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~ 836 (1324)
.|. ........ .++.++ ..|++++|++.++++ + ...++..+|.++...|++++
T Consensus 162 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 162 TPA-----YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp STT-----TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CcC-----cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 886 22222111 356666 999999999999887 2 26788999999999999999
Q ss_pred HHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChH
Q psy12365 837 AVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYD 903 (1324)
Q Consensus 837 A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~ 903 (1324)
|+.+|+++.. +..++.+|...|++++|+..+++.. ...++..+|.++...|++++|+..|.++
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---- 311 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA---- 311 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH----
Confidence 9999999864 6677899999999999999998764 6778999999999999999999999983
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 904 NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 904 ~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+.+..... .+... .......+...+|.++...|++++|...+.++
T Consensus 312 --l~~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 312 --LNMQRKSR-GPRGE----GGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --HHHHHTC-----------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred --HHhCCCCC-Ccccc----ccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 33333211 00000 00122456778999999999999999988765
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=2.3e-13 Score=160.00 Aligned_cols=227 Identities=12% Similarity=0.165 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC-------C----
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN-------S---- 817 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~---- 817 (1324)
..+...|..+...|++++|+.+|++++...|. ++.....++..++.++...|++++|++.++++. +
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455666666666666666666666666554 222223455556666666666666666555431 1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------------HHHHHHHHHHcCC--------------------HHHH
Q psy12365 818 SVLKNECADILQQFNKLNDAVTLYESAGN--------------YEKAATCYIQLKN--------------------WTKI 863 (1324)
Q Consensus 818 ~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------------~~~~~~~~~~~~~--------------------~~~A 863 (1324)
..++..+|.++..+|++++|+.+|+++.. +..++.+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34556666666666666666666666543 2233455566666 6666
Q ss_pred HhhhhccC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHH
Q psy12365 864 GQLLPHIK-----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 932 (1324)
Q Consensus 864 ~~~~~~~~-----------~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 932 (1324)
+.++++.. ...++..+|.++...|++++|+..|.+ ++.+... ..++... ..+.
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~-~~~~~~~---------~~~~ 230 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ------RLLIAKE-FGDKAAE---------RRAY 230 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH------HHHHHHH-TTCHHHH---------HHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH------HHHHHHh-cCCcHHH---------HHHH
Confidence 65554432 234677789999999999999999998 4445443 2222211 2246
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 933 KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 933 ~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
..+|.++...|++++|+.+|.++ +.+....+. .......+..+|..|...|++.+|..+|.+
T Consensus 231 ~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 231 SNLGNAYIFLGEFETASEYYKKT------LLLARQLKD-----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHH------HHHHHhCcC-----------chHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 78999999999999999998866 232222111 011245677778777777666666666544
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.60 E-value=3e-13 Score=178.84 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=116.5
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCC------CcEEEEECCCcEEEEEe-CCCCE-------EEEEEcCCCCEEEEEEc--
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRD------SSVSIYNKHGKLIDKIT-LPGLC-------IVMDWDSEGDLLGIISS-- 74 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~------~~v~v~~~~~~~~~~~~-~~~~i-------~~i~~~~d~~~l~~~~~-- 74 (1324)
+|...+.+++||| ||++|++++.+ ..|++|+..+.....+. |.+.+ .+++|+|||+.+++++.
T Consensus 50 ~~~~~v~~~~~SP-DG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 50 SNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp CSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred eCCCcccCeEECC-CCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 5788899999999 99999988643 37999999776666666 66667 89999999995555543
Q ss_pred ---CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----------------EEEEEe--CCCCeEEEEecC
Q psy12365 75 ---NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----------------SVSIYN--KHGKLIDKITLP 132 (1324)
Q Consensus 75 ---~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----------------~i~v~d--~~g~~~~~~~~~ 132 (1324)
....|++|+..++....+. .+ ....+.|+| | ++++ ...+|. ..++......|.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~-~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLN-LG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECC-SC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred CCcccceEEEEECCCCCeEEec-CC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 1246888888877765443 22 234667888 6 5544 123332 223333333467
Q ss_pred CcEEEEEEcCCCCEEEEEEc--CCCcEEEeeccc--------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 133 GLCIVMDWDSEGDLLGIISS--NSSAVNVWTLLT--------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 133 ~~i~~~~~~~~g~~l~~~~~--~~~~i~iwd~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+.+.++.|+++ .++++ +. ....|..++... ...+..+.|+|||++|+++ .++.|.+|+...
T Consensus 204 ~~v~~~~~s~d-~l~~~-~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFI-TDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp SCCEEEEEETT-EEEEE-ECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred CcccceEEeCC-EEEEE-EeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 77888888877 33333 43 246677776541 1335567888888877776 477788887643
No 157
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.59 E-value=4.1e-14 Score=152.87 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=110.3
Q ss_pred CCCCCeeEEEEec--CCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CC---CCEEEEEEcCCCCEEE------------E
Q psy12365 11 PHGPGDVYVCWQR--RTGELLATTGRDSSVSIYNK-HGKLIDKIT-LP---GLCIVMDWDSEGDLLG------------I 71 (1324)
Q Consensus 11 ~h~~~i~~~~~sp--~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~---~~i~~i~~~~d~~~l~------------~ 71 (1324)
+|+..+..++|+| .++++|++++.|++|+|||. +|+.+..+. +. ..+.+++|+|||..++ +
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 3444555555554 34577889999999999998 688888887 33 4677889999998874 4
Q ss_pred EEcCCCeEEEEEcCCCeEEEEe-----cCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEe-cCCcEE-EE
Q psy12365 72 ISSNSSAVNVWNTYTKKRTIVD-----SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKIT-LPGLCI-VM 138 (1324)
Q Consensus 72 ~~~~d~~i~iw~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~-~~~~i~-~~ 138 (1324)
++. |++|++||..+++...++ .+|...+.+. +.++..+++ +|++||+. |+...++. |...+. .+
T Consensus 256 Gs~-D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 256 RSP-VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp --C-CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred cCC-CcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 555 899999999999876554 3666554333 333667776 89999987 88888886 444444 68
Q ss_pred EEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 139 DWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 139 ~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
+|+|||++|++ |+.|++|+|||.
T Consensus 333 afSPDG~~LaS-GS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLA-GQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEE-ECTTSCEEEEEE
T ss_pred EECCCCCEEEE-EECCCcEEEecC
Confidence 99999999999 999999999986
No 158
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=168.83 Aligned_cols=257 Identities=10% Similarity=0.007 Sum_probs=181.8
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..++.+|..+...|++++|+..|.++. + . .+....++..+|.++...|++++|+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al-------------------~----~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAI-------------------L----Q-DPGDAEAWQFLGITQAENENEQAAIVA 121 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHH-------------------H----H-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------H----h-CcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 347888999999999999999876632 1 1 244567788889999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hH----------HHHHHHHHHHHccCHH
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SV----------LKNECADILQQFNKLN 835 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~----------~~~~l~~~~~~~g~~~ 835 (1324)
|++++..+|. +...+..++.+|.+.|++++|++.++++.. .. ++..+|..+...|+++
T Consensus 122 ~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 122 LQRCLELQPN-------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHHHhcCCC-------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 9999888886 456677788899999999999988887633 12 2234588888999999
Q ss_pred HHHHHHHHhcC----------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 836 DAVTLYESAGN----------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 836 ~A~~~y~~~~~----------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+|+.+|+++.. +..++.+|...|++++|+..+++.. ++.++..+|.++...|++++|+..|.++.
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988753 4566788888899999988887754 67889999999999999999999999843
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccC
Q psy12365 901 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE 980 (1324)
Q Consensus 901 ~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l 980 (1324)
.+ .+....+...+|.+|...|++++|+.+|.++ +.+..+...... . .
T Consensus 275 ------~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~---~--~ 321 (365)
T 4eqf_A 275 ------EI----------------QPGFIRSRYNLGISCINLGAYREAVSNFLTA------LSLQRKSRNQQQ---V--P 321 (365)
T ss_dssp ------HH----------------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH------HHHHHCC------------
T ss_pred ------hc----------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH------HHhCcccCCCcc---c--c
Confidence 21 1133556788999999999999999999877 222211100000 0 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 981 EDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 981 ~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
........+..++..+...|+.+.|.....+
T Consensus 322 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 322 HPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -----CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 0112356778888877777776666655443
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.59 E-value=1.1e-12 Score=150.70 Aligned_cols=181 Identities=14% Similarity=-0.004 Sum_probs=138.4
Q ss_pred CCCCeeEEEEecCCCCEEEEEeC-------CCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGR-------DSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~-------~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
.+.++..++|+| +|+++++++. ++.|.+||. +++.+..+.....+.+++|+|||+.++++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 446788999999 9999888774 468999998 6777777776666889999999998888777689999999
Q ss_pred cCCCeEEEEecCCCCC---------ceEEEEecCCCEEEE-------EEEEEeCC-CCeEEEEe-cCCcEEEEEEcCCCC
Q psy12365 84 TYTKKRTIVDSGLRDP---------LTCLVWCKQCSMLQL-------SVSIYNKH-GKLIDKIT-LPGLCIVMDWDSEGD 145 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~~~~~-~~~~i~~~~~~~~g~ 145 (1324)
..+++....+..+... +.++.|+|+|+.+++ .|.+||.. ++....+. +...+..++|+|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9988876655443322 688999999998776 59999986 55666665 444578899999999
Q ss_pred EEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCC-CcEEEEEc
Q psy12365 146 LLGIISSNSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSG-GSVKIYLS 194 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~d-g~i~~~~~ 194 (1324)
.+++ ++.++.|.+||..+. ..+..+.|+|+|+.+++++.+ +.|.+|+.
T Consensus 198 ~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 198 RLYT-TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp EEEE-ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred EEEE-EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 9888 888899999998732 124457777777766655543 56666654
No 160
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.58 E-value=3.3e-14 Score=164.40 Aligned_cols=265 Identities=9% Similarity=-0.028 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHH
Q psy12365 648 ETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRR 727 (1324)
Q Consensus 648 ~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~ 727 (1324)
..|..+|..+...|+++.|+..|.++.. .... ....+..+|.++...|++++|+..|.++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------- 125 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAIL--------QDPG-DAEAWQFLGITQAENENEQAAIVALQRC----------- 125 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------
Confidence 4588999999999999999999987632 2223 4567789999999999999999987653
Q ss_pred HHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCCh---hhHHhhhchHHHHHHhcCC
Q psy12365 728 DLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDP---ECQRKCKEGIARTSIRVGD 804 (1324)
Q Consensus 728 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~ 804 (1324)
+.+ .+....++..+|.++...|++++|+..|++++...|...... ......+..++.++.+.|+
T Consensus 126 --------l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 126 --------LEL-----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp --------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH
T ss_pred --------Hhc-----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 221 345577889999999999999999999999999887510000 0011223346889999999
Q ss_pred HHHHHHHHHhcC-------ChHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhc
Q psy12365 805 FRLGIRLAAESN-------SSVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH 869 (1324)
Q Consensus 805 ~~~A~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~ 869 (1324)
+++|+++++++. +..++..+|.++...|++++|+.+|+++.. +..++.+|...|++++|+..+++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998872 377899999999999999999999999864 66788999999999999999987
Q ss_pred cC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCC
Q psy12365 870 IK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD 944 (1324)
Q Consensus 870 ~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~ 944 (1324)
.. .+.++..+|.++...|++++|+..|.+ ++.+.....+ +.... ...........++..+...|+
T Consensus 273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT------ALSLQRKSRN-QQQVP---HPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH------HHHHHHCC----------------CHHHHHHHHHHHHHTC
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH------HHHhCcccCC-Ccccc---hhhhHHHHHHHHHHHHHHcCc
Confidence 65 678899999999999999999999999 4444443211 10000 001234556789999999999
Q ss_pred HHHHHHHHHHc
Q psy12365 945 FGAAIHFLILS 955 (1324)
Q Consensus 945 ~~~Ai~~~~~~ 955 (1324)
.+.|.....+.
T Consensus 343 ~~~a~~~~~~~ 353 (365)
T 4eqf_A 343 PELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99888776654
No 161
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=1.7e-14 Score=163.95 Aligned_cols=258 Identities=11% Similarity=0.030 Sum_probs=165.2
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.++.+|..+...|++++|+.+|.++. + ..+....++..+|..+...|++++|+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------------~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~ 76 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVC-------------------Q-----AAPEREEAWRSLGLTQAENEKDGLAII 76 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------H-----hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456888999999999999999876632 1 122344556666777777777777777
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHH--------------HH-HHH
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNEC--------------AD-ILQ 829 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l--------------~~-~~~ 829 (1324)
+|++++...|. +...+..++.++...|++++|++.++++.. ...+..+ +. ++.
T Consensus 77 ~~~~a~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 77 ALNHARMLDPK-------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTT
T ss_pred HHHHHHhcCcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 77777766665 344455566777777777777766665411 2222222 33 466
Q ss_pred HccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 830 QFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAY 896 (1324)
Q Consensus 830 ~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y 896 (1324)
..|++++|..+|+++.. +..++.+|...|++++|+.++++.. ++.++..+|.++...|++++|+..|
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66777777777776543 4445566677777777777666543 5778889999999999999999999
Q ss_pred HHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhh
Q psy12365 897 ERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGK 976 (1324)
Q Consensus 897 ~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~ 976 (1324)
.++.+ +. ..+..+...+|.++...|++++|++.|.++ +.+.........
T Consensus 230 ~~a~~------~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~~~~~~~~--- 278 (327)
T 3cv0_A 230 NRALD------IN----------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA------IYMQVGGTTPTG--- 278 (327)
T ss_dssp HHHHH------HC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHTTSCC------
T ss_pred HHHHH------cC----------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHH------HHhCCccccccc---
Confidence 88431 11 123455778999999999999999998876 111110000000
Q ss_pred hccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 977 FLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 977 ~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
. .........+..+|..+...|++.+|...|.+
T Consensus 279 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 279 E--ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred c--chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 00000467788888887777777777766654
No 162
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.4e-14 Score=153.44 Aligned_cols=211 Identities=16% Similarity=0.068 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC----------
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS---------- 817 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------- 817 (1324)
...+..+|..+...|+|++|+.+|++++... . +...+..+|.++...|++++|++.++++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 4567889999999999999999999999888 5 356677899999999999999999888633
Q ss_pred --hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHH
Q psy12365 818 --SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYR 890 (1324)
Q Consensus 818 --~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~ 890 (1324)
..++..+|.++...|++++|+.+|+++........++...|++++|+..+++.. .+.++..+|.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 478899999999999999999999999887777788999999999999998765 5567888999999999999
Q ss_pred HHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccc
Q psy12365 891 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 970 (1324)
Q Consensus 891 ~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~ 970 (1324)
+|+..|.++.+ +. +.+......+|.++...|++++|+..|.++
T Consensus 157 ~A~~~~~~a~~------~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--------------- 199 (258)
T 3uq3_A 157 NAVKAYTEMIK------RA----------------PEDARGYSNRAAALAKLMSFPEAIADCNKA--------------- 199 (258)
T ss_dssp HHHHHHHHHHH------HC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHh------cC----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------
Confidence 99999998432 11 123455778999999999999999998877
Q ss_pred hhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 971 LHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 971 ~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+. .|..+..+..+|..+...|++.+|...|.++
T Consensus 200 ---------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 200 ---------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp ---------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 4567888999998888888887777776654
No 163
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=6.8e-14 Score=164.86 Aligned_cols=264 Identities=12% Similarity=0.142 Sum_probs=191.6
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHcCCHHHHH
Q psy12365 692 TSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQT---PIISCDYAQQLEMTGQHAQAL 768 (1324)
Q Consensus 692 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~ 768 (1324)
.+..+|..+...|++++|+..|.++ ++. .+.+. ..++..+|..+...|++++|+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~a-------------------l~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAA-------------------IQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHH-------------------HHh----cccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3456788899999999999977553 222 23332 257788999999999999999
Q ss_pred HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccC----
Q psy12365 769 SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNK---- 833 (1324)
Q Consensus 769 ~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~---- 833 (1324)
.+|++++...... .+......++..++.+|...|++++|++.++++.. ..++..+|.++...|+
T Consensus 107 ~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 107 QYHKHDLTLAKSM-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 9999998763210 01234566777889999999999999988877532 4577889999999999
Q ss_pred -------------HHHHHHHHHHhcC--------------HHHHHHHHHHcCCHHHHHhhhhccC-------C----HHH
Q psy12365 834 -------------LNDAVTLYESAGN--------------YEKAATCYIQLKNWTKIGQLLPHIK-------S----ATT 875 (1324)
Q Consensus 834 -------------~~~A~~~y~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~~~-------~----~~~ 875 (1324)
+++|+.+|+++.. +..++.+|...|++++|+.++++.. . ..+
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999998888754 3456678889999999988887765 1 227
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 876 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 876 ~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+..+|.++...|++++|+.+|.+ ++.+.... ++.... ......+|.++...|++++|+++|.++
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~-~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKR------TLALAVEL-GEREVE---------AQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH------HHHHHHHT-TCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH------HHHHHHHc-CCHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77889999999999999999998 44444432 222211 234678999999999999999998866
Q ss_pred CCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 956 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 956 ~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+.++.+.+. .......+..+|..|...|++.+|..+|.++
T Consensus 330 ------l~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 330 ------LAIAQELGD-----------RIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp ------HHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHHCCC-----------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333322211 1122457778888888888888887776654
No 164
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=5.9e-13 Score=156.79 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS----------- 817 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------- 817 (1324)
..+..+|..+...|+|++|+.+|++++...|. ++.....++..++.+|...|++++|++++++...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34567889999999999999999999999886 3333346778899999999999999998776522
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------------HHHHHHHHHHcCC-----------------HHHHHhh
Q psy12365 818 SVLKNECADILQQFNKLNDAVTLYESAGN--------------YEKAATCYIQLKN-----------------WTKIGQL 866 (1324)
Q Consensus 818 ~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------------~~~~~~~~~~~~~-----------------~~~A~~~ 866 (1324)
..++..+|.++..+|++++|..+|+++.. +..++.+|...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 56788999999999999999999999865 3355678889999 9999888
Q ss_pred hhccC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHH
Q psy12365 867 LPHIK-----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRI 935 (1324)
Q Consensus 867 ~~~~~-----------~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l 935 (1324)
+++.. ...++..+|.++...|++++|+.+|.+ ++.+.... .+.... ..+...+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~-~~~~~~---------~~~~~~l 269 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE------RLRIAREF-GDRAAE---------RRANSNL 269 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHH-TCHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHhc-CCcHHH---------HHHHHHH
Confidence 77653 234677789999999999999999998 44444432 222211 1246789
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 936 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 936 a~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
|.+|...|++++|+.+|.++ +.+..+.+. .......+..+|.+|..+|++.+|..+|.+
T Consensus 270 a~~~~~~g~~~~A~~~~~~a------l~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRT------LALAVELGE-----------REVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------HHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH------HHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998866 232222111 011245677778777777776666666554
No 165
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=4.4e-13 Score=155.87 Aligned_cols=244 Identities=9% Similarity=0.041 Sum_probs=175.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcC-CCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12365 694 ILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLG-SNQTPIISCDYAQQLEMTGQHAQALSFYQ 772 (1324)
Q Consensus 694 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~y~ 772 (1324)
+..|.++...|++++|+..|.+ |+++++... +.....++..+|.++...|++++|+.+|+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~-------------------al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKK-------------------AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-------------------HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-------------------HHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3488999999999999997755 333333321 12345788999999999999999999999
Q ss_pred HhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHHHHHH
Q psy12365 773 KSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDAVTLY 841 (1324)
Q Consensus 773 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~y 841 (1324)
+++...+...........++..+|.+|...|++++|++.++++.+ ..++..+|.++..+|++++|+.+|
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999876642111344567888899999999999999998887643 357889999999999999999999
Q ss_pred HHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHH
Q psy12365 842 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD 921 (1324)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~ 921 (1324)
+++... +...++ ......++..+|.++...|++++|+.+|.+ |+.+..+ .+++.....
T Consensus 248 ~~al~~------~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~-~~~~~~~~~ 305 (383)
T 3ulq_A 248 KRAIAV------FEESNI---------LPSLPQAYFLITQIHYKLGKIDKAHEYHSK------GMAYSQK-AGDVIYLSE 305 (383)
T ss_dssp HHHHHH------HHHTTC---------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH-HTCHHHHHH
T ss_pred HHHHHH------HHhhcc---------chhHHHHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHH-cCCHHHHHH
Confidence 877642 111111 011245677899999999999999999999 4444443 333332222
Q ss_pred HHHHhcChHHHHHHHHHHHHcCC---HHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHh
Q psy12365 922 IVKAKKCTEGAKRIADYCNKHGD---FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE 998 (1324)
Q Consensus 922 ~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~ 998 (1324)
...++.++...|+ +++|+.++.+.+... .....+..+|.+|..
T Consensus 306 ----------~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~------------------------~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 306 ----------FEFLKSLYLSGPDEEAIQGFFDFLESKMLYA------------------------DLEDFAIDVAKYYHE 351 (383)
T ss_dssp ----------HHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH------------------------HHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH------------------------HHHHHHHHHHHHHHH
Confidence 3468999999999 677777666653221 123566778888888
Q ss_pred cCCHHHHHHHHHHh
Q psy12365 999 DKDMFRAAQYYYHA 1012 (1324)
Q Consensus 999 ~g~~~~A~~~y~~~ 1012 (1324)
+|++.+|..+|.++
T Consensus 352 ~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 352 RKNFQKASAYFLKV 365 (383)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88887777776653
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.3e-14 Score=170.10 Aligned_cols=324 Identities=13% Similarity=0.028 Sum_probs=170.5
Q ss_pred HHHhhcHHHHHHHHHhh--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhh----cc
Q psy12365 628 VLKLLNWKEAWNICAVL--------------NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVE----EE 689 (1324)
Q Consensus 628 ~l~~~~~~~A~~~~~~~--------------~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~----~~ 689 (1324)
+...|++++|++.+++. .....|..+|.++...|++++|+.+|.++..... .... +.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~-----~~~~~~~~~~ 135 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE-----KFSSPYRIES 135 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSCCSSCCCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH-----hcccccchhh
Confidence 45679999999887643 2256799999999999999999999987643211 1111 12
Q ss_pred cchhhHHHHHHHHc--CCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHH---HHHcCCH
Q psy12365 690 EDTSILCGHVAALL--GNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQ---LEMTGQH 764 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~--g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~---~~~~g~~ 764 (1324)
++.+...|..+... ++|++|+.+|.++. . . .|+.+.++..++.+ +...|++
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal-------------------~----~-~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKAL-------------------E----K-KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHH-------------------H----H-STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHH-------------------H----h-CCCCHHHHHHHHHHHHHhcCchHH
Confidence 23445556555544 46888888876642 1 1 12223333444433 2233444
Q ss_pred HHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHH----HhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHH
Q psy12365 765 AQALSFYQKSMELATPDIQDPECQRKCKEGIARTS----IRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLN 835 (1324)
Q Consensus 765 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~ 835 (1324)
++|++.|++++..+|. +...+..++..+ ...|++++|+++++++ ++ ..++..+|..|...|+++
T Consensus 192 ~~al~~~~~al~l~p~-------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPD-------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp CCTHHHHHHHHHHCSS-------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCCc-------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence 5555555555555554 112222222222 2234445555554443 11 445555555555555555
Q ss_pred HHHHHHHHhcC--------HHHHHHHHHH-------------------cCCHHHHHhhhhccC-----CHHHHHHHHHHH
Q psy12365 836 DAVTLYESAGN--------YEKAATCYIQ-------------------LKNWTKIGQLLPHIK-----SATTFIQYAKAK 883 (1324)
Q Consensus 836 ~A~~~y~~~~~--------~~~~~~~~~~-------------------~~~~~~A~~~~~~~~-----~~~~~~~~a~~~ 883 (1324)
+|+..|+++.. +..++.+|.. .+.+++|+..+++.. ...++..+|.++
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 55555555432 1222222211 123455555554432 455677889999
Q ss_pred HHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHH-HHHcCCHHHHHHHHHHcCCHH---
Q psy12365 884 EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY-CNKHGDFGAAIHFLILSKCYQ--- 959 (1324)
Q Consensus 884 ~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~-~~~~g~~~~Ai~~~~~~~~~~--- 959 (1324)
...|++++|+++|.++.+. -.++..... .+..+|.+ +...|++++|++.|.++..+.
T Consensus 345 ~~~~~~~~A~~~~~kaL~~----------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK----------ELTPVAKQL---------LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS----------CCCHHHHHH---------HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHhccHHHHHHHHHHHHhc----------CCCChHHHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999985321 112221111 13445544 457899999999998763211
Q ss_pred ----HHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 960 ----DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 960 ----~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
.....+. ..+...+.. .|.++.++..+|.+|..+|++.+|..+|.++
T Consensus 406 ~~~~~~~~~l~-----~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 406 REKEKMKDKLQ-----KIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHH-----HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111110 011111111 5677889999998888877777777776665
No 167
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.55 E-value=9.7e-14 Score=157.63 Aligned_cols=258 Identities=10% Similarity=-0.034 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHH
Q psy12365 648 ETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRR 727 (1324)
Q Consensus 648 ~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~ 727 (1324)
..|..+|..+...|++++|+.+|.++.. .... ....+..+|.++...|++++|...|.++.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---------- 82 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--------AAPE-REEAWRSLGLTQAENEKDGLAIIALNHAR---------- 82 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------
Confidence 3467888899999999999999886532 2222 45567788999999999999999776532
Q ss_pred HHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchH------------
Q psy12365 728 DLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGI------------ 795 (1324)
Q Consensus 728 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l------------ 795 (1324)
+. .+....++..+|..+...|++++|++.|++++...|.. ...+..+
T Consensus 83 ---------~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 83 ---------ML-----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY-------EQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp ---------HH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-------TTC----------------
T ss_pred ---------hc-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------HHHHHHHhHHHHHHHHHHH
Confidence 11 24456788999999999999999999999999998862 1122222
Q ss_pred --HH-HHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCC
Q psy12365 796 --AR-TSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKN 859 (1324)
Q Consensus 796 --a~-~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~ 859 (1324)
+. ++...|++++|+++++++ ++ ..++..+|.++...|++++|..+|+++.. +..++.+|...|+
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 33 477899999999998886 22 78899999999999999999999999864 5677899999999
Q ss_pred HHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHH
Q psy12365 860 WTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 934 (1324)
Q Consensus 860 ~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 934 (1324)
+++|+..+++.. ...++..+|.++...|++++|++.|.++. .+........... ...........
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------~~~~~~~~~~~~~----~~~~~~~~~~~ 291 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI------YMQVGGTTPTGEA----SREATRSMWDF 291 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHTTSCC---------CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH------HhCCccccccccc----hhhcCHHHHHH
Confidence 999999988764 67788999999999999999999999843 3322210000000 00002345678
Q ss_pred HHHHHHHcCCHHHHHHHHHHc
Q psy12365 935 IADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 935 la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+|.++...|++++|...+.++
T Consensus 292 l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 292 FRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999988766
No 168
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.7e-13 Score=144.35 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~ 821 (1324)
.+.++..+|..+...|++++|+..|++++..+|+ +...+..+|.++.+.|++++|++.+++. |+ ..++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 76 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY 76 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3567889999999999999999999999999998 5667778999999999999999998886 33 7889
Q ss_pred HHHHHHHHHc-----------cCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHH
Q psy12365 822 NECADILQQF-----------NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYR 890 (1324)
Q Consensus 822 ~~l~~~~~~~-----------g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~ 890 (1324)
..+|.++..+ |++++|+..|+++... .-.++.++..+|.++...|+++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------------------NPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------------------CcccHHHHHHHHHHHHHcCChH
Confidence 9999999999 8888888887776531 1115678888999999999999
Q ss_pred HHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccc
Q psy12365 891 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 970 (1324)
Q Consensus 891 ~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~ 970 (1324)
+|+..|.++. ++. .+.++...+|.++...|++++|+..|.++
T Consensus 136 ~A~~~~~~al------~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 177 (217)
T 2pl2_A 136 KAEASLKQAL------ALE-----------------DTPEIRSALAELYLSMGRLDEALAQYAKA--------------- 177 (217)
T ss_dssp HHHHHHHHHH------HHC-----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH------hcc-----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Confidence 9999999843 111 23445678999999999999999999877
Q ss_pred hhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q psy12365 971 LHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHAK 1013 (1324)
Q Consensus 971 ~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~g 1013 (1324)
+. .|.++..+..+|..+...|++.+|...|.++.
T Consensus 178 ---------l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 178 ---------LEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ---------HHHSTTCHHHHHHHHHHHTC---------------
T ss_pred ---------HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 22 66788999999999888888888888777653
No 169
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.53 E-value=1.7e-12 Score=164.91 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=125.7
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcE--EEEEeCC-----------------CCEEEEEEcCCCCEEEEEEcC
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNK-HGKL--IDKITLP-----------------GLCIVMDWDSEGDLLGIISSN 75 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~--~~~~~~~-----------------~~i~~i~~~~d~~~l~~~~~~ 75 (1324)
+..+.|+ |+.+++++.++ | +||. +|+. ...+.+. ..+.+++|||| ..++++.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-- 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-- 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE--
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE--
Confidence 4456776 56677777777 8 9997 5554 2223322 46999999999 7777764
Q ss_pred CCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCC-----CeEEEEec-C-Cc----------
Q psy12365 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHG-----KLIDKITL-P-GL---------- 134 (1324)
Q Consensus 76 d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g-----~~~~~~~~-~-~~---------- 134 (1324)
++.|++||+.+++..... .+...+.+++|||||+.|++ .|++||..+ .....+.. . ..
T Consensus 100 ~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 699999999988776553 56677899999999999887 999999875 44344332 1 11
Q ss_pred ----EEEEEEcCCCCEEEEEEc---------------------------------CCCcEEEeecccC------------
Q psy12365 135 ----CIVMDWDSEGDLLGIISS---------------------------------NSSAVNVWTLLTY------------ 165 (1324)
Q Consensus 135 ----i~~~~~~~~g~~l~~~~~---------------------------------~~~~i~iwd~~~~------------ 165 (1324)
+.++.|+|||++|++ ++ .+..|.+||+.+.
T Consensus 179 e~~~~~~~~~SpDg~~la~-~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAF-YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp CTTCCCSEEECTTSSEEEE-EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hcCCCceEEECCCCCEEEE-EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 478999999999999 54 4467899998732
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC-----cEEEEEcCC
Q psy12365 166 TLGERISWSDDGQLLAVTTSGG-----SVKIYLSKL 196 (1324)
Q Consensus 166 ~~i~~~~~s~~~~~l~~~~~dg-----~i~~~~~~~ 196 (1324)
..+..+.|+|||++|++++.++ .|.+|+...
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 3478899999999999887665 788888654
No 170
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1.3e-12 Score=148.82 Aligned_cols=225 Identities=12% Similarity=0.171 Sum_probs=148.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hH
Q psy12365 751 SCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SV 819 (1324)
Q Consensus 751 ~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~ 819 (1324)
+...|..+...|++++|+.+|++++...|. ++......+..++.++...|++++|++++++... ..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 355677777778888888888888777665 2222345566677777788888877777665421 44
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC--------------HHHHHHHHHHcCC--------------------HHHHHh
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN--------------YEKAATCYIQLKN--------------------WTKIGQ 865 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~--------------~~~~~~~~~~~~~--------------------~~~A~~ 865 (1324)
++..+|..+...|++++|..+|+++.. +..++.+|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 667777788888888888777777643 3344566677777 777776
Q ss_pred hhhccC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHH
Q psy12365 866 LLPHIK-----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 934 (1324)
Q Consensus 866 ~~~~~~-----------~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 934 (1324)
.+++.. ...++..+|.++...|++++|+++|.+ ++.+... .+++... ..+...
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~~~-~~~~~~~---------~~~~~~ 228 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ------RLLIAKE-FGDKAAE---------RRAYSN 228 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHH-HTCHHHH---------HHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHh-cCChHHH---------HHHHHH
Confidence 665542 234677789999999999999999988 4444443 2222211 224678
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 935 IADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 935 la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+|.++...|++++|+++|.++ +.+....+. .......+..+|..+...|++.+|..+|.+
T Consensus 229 l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKT------LLLARQLKD-----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------HHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------HHHHHhhcc-----------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999998866 222222111 011245667777777766666666665543
No 171
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.7e-13 Score=154.64 Aligned_cols=264 Identities=14% Similarity=0.154 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHcCCHHHHH
Q psy12365 692 TSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQT---PIISCDYAQQLEMTGQHAQAL 768 (1324)
Q Consensus 692 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~ 768 (1324)
.+...|..+...|++++|+..|.++ ++. .+.+. ..++..+|..+...|++++|+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~a-------------------l~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAA-------------------VQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-------------------Hhh----CcccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566788999999999999987553 221 22222 356778888888888888888
Q ss_pred HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccC----
Q psy12365 769 SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNK---- 833 (1324)
Q Consensus 769 ~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~---- 833 (1324)
++|++++...+.. .+.......+..++.++...|++++|++.+++... ..++..+|.++...|+
T Consensus 64 ~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 64 EYHHHDLTLARTI-GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 8888887653210 01133456667788888888888888887776522 3377788888888888
Q ss_pred ----------------HHHHHHHHHHhcC--------------HHHHHHHHHHcCCHHHHHhhhhccC-------C----
Q psy12365 834 ----------------LNDAVTLYESAGN--------------YEKAATCYIQLKNWTKIGQLLPHIK-------S---- 872 (1324)
Q Consensus 834 ----------------~~~A~~~y~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~~~-------~---- 872 (1324)
+++|..+|+++.. +..++.+|...|++++|+.++++.. .
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 8888888877643 3445677888888888888877654 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 873 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 952 (1324)
Q Consensus 873 ~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~ 952 (1324)
..++..+|.++...|++++|+..|.+ ++.+... .+++... ......+|.++...|++++|+.+|
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~-~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKK------TLLLARQ-LKDRAVE---------AQSCYSLGNTYTLLQDYEKAIDYH 286 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHH-TTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHh-hcchhHH---------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 23677889999999999999999998 4444443 2232211 234678999999999999999998
Q ss_pred HHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 953 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 953 ~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
.++ +.+....+. .+.....+..+|..|...|++.+|..+|.++
T Consensus 287 ~~a------~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 287 LKH------LAIAQELKD-----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHH------HHHHHHHTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH------HHHHHhcCC-----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 866 222221111 1122456677787777777766666666553
No 172
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.51 E-value=1.4e-12 Score=143.99 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=169.6
Q ss_pred HHHHHHcCCHHHHHHHHHhCC--ChHH-------HHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHH
Q psy12365 697 GHVAALLGNHDTAQQRYLTSD--IPTM-------ALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQA 767 (1324)
Q Consensus 697 a~~~~~~g~~~~A~~~~~~~~--~~~~-------a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 767 (1324)
.+-+.+.|+|+.|+..+.+.. .|+. ....|..+|++++|+..++...++ .......++..+...|++++|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~-~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP-ELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCH-HHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCCh-hHHHHHHHHHHHcCCCcHHHH
Confidence 355678899999999887643 2432 245678889999999877654332 446778889999999999999
Q ss_pred HHHHHHhccc--CCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 768 LSFYQKSMEL--ATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 768 ~~~y~~al~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
++.|++++.. +|+ +...+..+|.++...|++++|++.+++....+++..+|.++..+|++++|...|+++.
T Consensus 85 ~~~l~~ll~~~~~P~-------~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 85 VAELDREMSRSVDVT-------NTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHSCCCCS-------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998865 465 4455667899999999999999999994448899999999999999999999999986
Q ss_pred CH------HHHH----HHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHH
Q psy12365 846 NY------EKAA----TCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 910 (1324)
Q Consensus 846 ~~------~~~~----~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~ 910 (1324)
.. ..++ .++...|++++|+.+++++. ++.++..+|.++...|++++|+..|.++.. +
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~------~-- 229 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD------K-- 229 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------H--
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------h--
Confidence 42 1222 23333477888888776654 667777788888888888888888877331 1
Q ss_pred hccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHH-HHHHHHc
Q psy12365 911 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAA-IHFLILS 955 (1324)
Q Consensus 911 ~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~A-i~~~~~~ 955 (1324)
.+.+.++..++|.++...|+++++ .+++.++
T Consensus 230 --------------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 230 --------------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123445566778888888887664 4555554
No 173
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.50 E-value=5.2e-13 Score=149.01 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=135.1
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC--cEEEEEe-C-CCCEEEEEEcCCCCEEEEEEcC-C--CeEEEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG--KLIDKIT-L-PGLCIVMDWDSEGDLLGIISSN-S--SAVNVWN 83 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~--~~~~~~~-~-~~~i~~i~~~~d~~~l~~~~~~-d--~~i~iw~ 83 (1324)
.|...|.+++|+| +|++|++++ ++.|.+||..+ +...... + ...+.+++|+|||+.|+++... + ..|..|+
T Consensus 39 ~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 39 QTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp EESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred cCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 4678899999999 999999877 78999999854 4443333 2 3678899999999999999831 3 4555556
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEe--CCCCeEEEE-ecCCcEEEEEEcCCCCEEEEEEcCC
Q psy12365 84 TYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYN--KHGKLIDKI-TLPGLCIVMDWDSEGDLLGIISSNS 154 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d--~~g~~~~~~-~~~~~i~~~~~~~~g~~l~~~~~~~ 154 (1324)
..++.... +..+ ..+..++|+|+|+.|++ .+.+|+ ..+.....+ .+.+.+.++.|+|+|+.+++.+..+
T Consensus 117 ~~~~~~~~-~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 117 STGGTPRL-MTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp TTCCCCEE-CCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCCCceEE-eecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCC
Confidence 66665443 3333 34889999999998874 567776 444333333 3667899999999999888735568
Q ss_pred CcEEEeecc-cC----------CCeeEEEEcCCCCEEEEEeCC-----------CcEEEEEcCC
Q psy12365 155 SAVNVWTLL-TY----------TLGERISWSDDGQLLAVTTSG-----------GSVKIYLSKL 196 (1324)
Q Consensus 155 ~~i~iwd~~-~~----------~~i~~~~~s~~~~~l~~~~~d-----------g~i~~~~~~~ 196 (1324)
+.+.+|+++ .. ..+..+.|+|+|++|++++.+ +.|.+|+...
T Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 195 GQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp SSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred CCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 899999876 11 457789999999999988765 4588888754
No 174
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.50 E-value=1.2e-13 Score=162.13 Aligned_cols=181 Identities=11% Similarity=0.114 Sum_probs=138.1
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECC------------CcE-----EEEEeCCCCEEEEEEcCCCCEEEE---
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKH------------GKL-----IDKITLPGLCIVMDWDSEGDLLGI--- 71 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~------------~~~-----~~~~~~~~~i~~i~~~~d~~~l~~--- 71 (1324)
+...+..+++++ ++.++++++.++ +++|+.. ... ...+.+++.|.+++|+|+|++|++
T Consensus 35 ~~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 344688999999 999999999888 8888731 011 122345678999999999999994
Q ss_pred -EEcCCCeEEEEEcCCC--------e---EEEEecCCCCCceEEEEecC-CCEEEE-----EEEEEeCCCC-eE-EEEec
Q psy12365 72 -ISSNSSAVNVWNTYTK--------K---RTIVDSGLRDPLTCLVWCKQ-CSMLQL-----SVSIYNKHGK-LI-DKITL 131 (1324)
Q Consensus 72 -~~~~d~~i~iw~~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~-----~i~v~d~~g~-~~-~~~~~ 131 (1324)
++. |+.|+|||+.++ + ....+.+|.+.|.+++|+|+ +..|++ +|++||.+.. .. ....|
T Consensus 113 sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEY-GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTT-EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCC-CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 444 899999998543 1 24456679999999999998 788877 8999998743 22 22336
Q ss_pred CCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc-cC---------------CCeeEEEEcCCCCEEEEE-eCCCc------
Q psy12365 132 PGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL-TY---------------TLGERISWSDDGQLLAVT-TSGGS------ 188 (1324)
Q Consensus 132 ~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~-~~---------------~~i~~~~~s~~~~~l~~~-~~dg~------ 188 (1324)
...|.+++|+|+|++|++ ++.||.|++||.+ .. ..+.++.|++++.++++. +.+|.
T Consensus 192 ~~~v~~v~wspdg~~las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 778999999999999999 9999999999987 11 168899999998877653 34433
Q ss_pred EEEEEcCC
Q psy12365 189 VKIYLSKL 196 (1324)
Q Consensus 189 i~~~~~~~ 196 (1324)
+++|++..
T Consensus 271 v~i~~l~~ 278 (434)
T 2oit_A 271 VVMALLPK 278 (434)
T ss_dssp EEEEECCC
T ss_pred eEEEEecc
Confidence 77888653
No 175
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.50 E-value=1.6e-12 Score=165.73 Aligned_cols=178 Identities=15% Similarity=0.122 Sum_probs=122.6
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeC-CC---CEEEEEEcCCCCEEEEEEcC--------CCeEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITL-PG---LCIVMDWDSEGDLLGIISSN--------SSAVN 80 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~-~~---~i~~i~~~~d~~~l~~~~~~--------d~~i~ 80 (1324)
..+.+++|+| ||+++++ +.||+|++||. +|+....+.+ .. .+.+++|||||++|++++.. ++.++
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 4477899999 9997765 78999999998 5555555553 32 48999999999999998751 27889
Q ss_pred EEEcCCCeEEEEe--cCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEec--CC------------------c
Q psy12365 81 VWNTYTKKRTIVD--SGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITL--PG------------------L 134 (1324)
Q Consensus 81 iw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~--~~------------------~ 134 (1324)
+||+.+++...+. .+|...+..++|||||+.|++ +|++||..+.....+.. .. .
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9999988763332 234445889999999999888 89999987544444432 22 2
Q ss_pred EEEEEEcCCCCEEEEEEcCCCcEEEeeccc-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 135 CIVMDWDSEGDLLGIISSNSSAVNVWTLLT-----YTLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 135 i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+.+++|||||+.|++.+..++.+.+|++.. ...+..+.|+++|.. ..+..|++|+....
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGP 238 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCC
Confidence 378999999999998343444555555431 133555666665542 22335666665443
No 176
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=5.6e-13 Score=146.70 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=153.1
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
++..+..|.++...|++++|+..|.++. + ..+....++..+|..+...|++++|++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l-------------------~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~ 58 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE-------------------A-----KKYNSPYIYNRRAVCYYELAKYDLAQK 58 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH-------------------H-----TTCCCSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------H-----hCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566788999999999999999876532 1 122334466777777777788888888
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHHHHHHHHHHHHccCHHHHHHHHHHh
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVLKNECADILQQFNKLNDAVTLYESA 844 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~y~~~ 844 (1324)
.|++++.. +. .+.....++..+|.++...|++++|++.++++. . ..++..+|.++..+|++++|+.+|+++
T Consensus 59 ~~~~a~~~-~~---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 59 DIETYFSK-VN---ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHTT-SC---TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHhc-cC---chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88877773 22 112223345567777777788888877777652 2 667777788888888888888888777
Q ss_pred cC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHhhChHHHHHH
Q psy12365 845 GN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGS---YRESVGAYERAEDYDNVVRV 908 (1324)
Q Consensus 845 ~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~---~~~A~~~y~~a~~~~~a~~~ 908 (1324)
.. +..++......+++++|++.+++.. ....+..+|.++...|+ +++|+..|.+ ++.+
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------a~~~ 208 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK------LIEV 208 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH------HHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH------HHHH
Confidence 65 4444523333457777777766554 56788889999999988 8999999988 4444
Q ss_pred HHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 909 DLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 909 ~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
.... .++... ...+++..+|.+|...|++++|+++|.++
T Consensus 209 ~~~~-~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 209 CAPG-GAKYKD-------ELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HGGG-GGGGHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhcc-cccchH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4321 111100 11245678999999999999999999887
No 177
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.5e-12 Score=143.20 Aligned_cols=209 Identities=13% Similarity=0.116 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHh----cCCHHHHHHHHHhcC---Ch
Q psy12365 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR----VGDFRLGIRLAAESN---SS 818 (1324)
Q Consensus 746 ~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~---~~ 818 (1324)
+.+.++..+|..+...|++++|+++|++++...+ ..++..++.+|.. .+++++|++++++.. ..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 74 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS 74 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH
Confidence 3456677788888888888888888888877222 3445567788887 888888888777763 37
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHhcC------HHHHHHHHHH----cCCHHHHHhhhhccC---CHHHHHHHHH
Q psy12365 819 VLKNECADILQQ----FNKLNDAVTLYESAGN------YEKAATCYIQ----LKNWTKIGQLLPHIK---SATTFIQYAK 881 (1324)
Q Consensus 819 ~~~~~l~~~~~~----~g~~~~A~~~y~~~~~------~~~~~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~a~ 881 (1324)
.++..+|.++.. .+++++|+.+|+++.+ +..++.+|.. .+++++|+.++++.. .+..+..+|.
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 154 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 777888888888 8888888888887753 4455667777 777777777776654 6778888899
Q ss_pred HHHH----cCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy12365 882 AKEA----MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLI 953 (1324)
Q Consensus 882 ~~~~----~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~ 953 (1324)
++.. .+++++|+.+|.++.+ . ....+...+|.+|.. .+++++|+++|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~-----------~-------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACD-----------L-------------KDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH-----------T-------------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH-----------C-------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 9988 8999999999988432 1 234556789999999 999999999988
Q ss_pred HcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q psy12365 954 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE----DKDMFRAAQYYYHA 1012 (1324)
Q Consensus 954 ~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~----~g~~~~A~~~y~~~ 1012 (1324)
++ +.. .++..+..+|..|.. .+++.+|..+|.++
T Consensus 211 ~a------------------------~~~-~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 211 KA------------------------CEL-ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HH------------------------HHT-TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HH------------------------HhC-CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 77 111 347788889988888 77777777777765
No 178
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.48 E-value=2.8e-12 Score=146.65 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=139.2
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCC-CcEEEEECC---Cc--EEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRD-SSVSIYNKH---GK--LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~-~~v~v~~~~---~~--~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
.|...+.+++|+| +|++|++++.+ +.|.+|+.+ |. .+..+...+.+.+++|+|+|+.+++++..++.|.+||+
T Consensus 35 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 4667789999999 99999888876 899999985 33 23344445588999999999999888765889999999
Q ss_pred CC---CeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCC--CCeEE----EEe--cCCcEEEEEEcCCCCEE
Q psy12365 85 YT---KKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH--GKLID----KIT--LPGLCIVMDWDSEGDLL 147 (1324)
Q Consensus 85 ~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~--g~~~~----~~~--~~~~i~~~~~~~~g~~l 147 (1324)
.+ ......... ...+.+++|+|+|+.+++ .|.+||.. ++... ... ....+..++|+|+|+++
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 43 334444433 345899999999998776 89999976 44322 122 34478889999999987
Q ss_pred EEEEcCCCcEEEeeccc--C------------------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy12365 148 GIISSNSSAVNVWTLLT--Y------------------TLGERISWSDDGQLLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 148 ~~~~~~~~~i~iwd~~~--~------------------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~ 195 (1324)
++.+..++.|.+|+++. . ..+..++|+|+|++|+++. .++.+.+|+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 76366889999999852 1 1344699999999888655 68999999976
No 179
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=1.1e-12 Score=155.14 Aligned_cols=291 Identities=12% Similarity=0.040 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCH---HHHHHHHHhCCChH-----HH
Q psy12365 651 RSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNH---DTAQQRYLTSDIPT-----MA 722 (1324)
Q Consensus 651 ~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~~~~~-----~a 722 (1324)
..+|..+++.|++++|+..|+++-+. . ..+..+.+|.++...|++ ++|+..|.++.+.. ..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~----------g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~L 75 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL----------G-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------T-CCTGGGTCC----------------------------CHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----------C-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 45788888999999999998875221 2 467778899999888888 89999998875431 11
Q ss_pred HHHHHHH-----hhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHH---HHHHHHHhcccCCCCCCChhhHHhhhch
Q psy12365 723 LTLRRDL-----RQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQ---ALSFYQKSMELATPDIQDPECQRKCKEG 794 (1324)
Q Consensus 723 ~~~~~~~-----~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~ 794 (1324)
..++... +++++|+..+++....+.+.++..+|.+|...+...+ |.+.+.++..... ..+...
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---------~~a~~~ 146 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---------PEAGLA 146 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---------TTHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---------HHHHHH
Confidence 1112222 3677787777765545555577788888877665433 4444554433222 334455
Q ss_pred HHHHHHhcCCHHHHH----HHHHhcCC--hHHHHHHHHHHHHcc---CHHHHHHHHHHhcC--------HHHHHHHHHHc
Q psy12365 795 IARTSIRVGDFRLGI----RLAAESNS--SVLKNECADILQQFN---KLNDAVTLYESAGN--------YEKAATCYIQL 857 (1324)
Q Consensus 795 la~~~~~~g~~~~A~----~~~~~~~~--~~~~~~l~~~~~~~g---~~~~A~~~y~~~~~--------~~~~~~~~~~~ 857 (1324)
++.+|...+.++++. .+.+.... +.+++.+|.+|...| ++++|+..|+++.+ +..++.+|...
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 788888777554444 34444432 668888888888888 88888888888753 25566777554
Q ss_pred ----CCHHHHHhhhhccC--CHHHHHHHHHH-H--HHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcC
Q psy12365 858 ----KNWTKIGQLLPHIK--SATTFIQYAKA-K--EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC 928 (1324)
Q Consensus 858 ----~~~~~A~~~~~~~~--~~~~~~~~a~~-~--~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~ 928 (1324)
+++++|+.++++.. ++.++..+|.+ + ...+++++|+++|+++-+ ..+
T Consensus 227 ~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~------------------------~g~ 282 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA------------------------ADQ 282 (452)
T ss_dssp GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH------------------------TTC
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------------------------CCC
Confidence 68888888877665 66678888887 4 467888888888887431 134
Q ss_pred hHHHHHHHHHHHHcC-----CHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHh----c
Q psy12365 929 TEGAKRIADYCNKHG-----DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE----D 999 (1324)
Q Consensus 929 ~~~~~~la~~~~~~g-----~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~----~ 999 (1324)
..+.+.+|.+|. .| ++++|+++|.++ . +.++.+++.||..|.. .
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A------------------------a--~g~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKA------------------------V--GREVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT------------------------T--TTCHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH------------------------h--CCCHHHHHHHHHHHHCCCCCC
Confidence 455667777776 44 777777777777 3 4566777777777665 3
Q ss_pred CCHHHHHHHHHHh
Q psy12365 1000 KDMFRAAQYYYHA 1012 (1324)
Q Consensus 1000 g~~~~A~~~y~~~ 1012 (1324)
.++.+|..+|.++
T Consensus 336 ~d~~~A~~~~~~A 348 (452)
T 3e4b_A 336 VYPQKALDHLLTA 348 (452)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 3666666666654
No 180
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.47 E-value=3.1e-12 Score=145.43 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=138.4
Q ss_pred eeE-EEEecCCCCEEEEEeCCC---cEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCe-EEEEEcCCCe-
Q psy12365 16 DVY-VCWQRRTGELLATTGRDS---SVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSA-VNVWNTYTKK- 88 (1324)
Q Consensus 16 i~~-~~~sp~~g~~l~~~~~~~---~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~-i~iw~~~~~~- 88 (1324)
+.. ++|+| +|++++++..++ .|.+||. +++.+..+.....+.+++|+|||++++++...++. |.+|++....
T Consensus 85 ~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~ 163 (331)
T 3u4y_A 85 SMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV 163 (331)
T ss_dssp CCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred CccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence 444 99999 999998554442 8999998 56677777766778999999999977776654677 9999986432
Q ss_pred E----EEEecCCCCCceEEEEecCCCEEEE------EEEEEeCC-CCe---EEEEecCCcEEEEEEcCCCCEEEEEEcCC
Q psy12365 89 R----TIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH-GKL---IDKITLPGLCIVMDWDSEGDLLGIISSNS 154 (1324)
Q Consensus 89 ~----~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~-g~~---~~~~~~~~~i~~~~~~~~g~~l~~~~~~~ 154 (1324)
. .... .....+..++|+|+|+.+++ .|.+||.. ++. ...+.....+..++|+|||+++++....+
T Consensus 164 ~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 164 LFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred EeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 2 1222 34455899999999997655 89999986 666 77777777888999999999877635567
Q ss_pred CcEEEeecccC-------------------CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCce
Q psy12365 155 SAVNVWTLLTY-------------------TLGERISWSDDGQLLAVTTS-GGSVKIYLSKLPKL 199 (1324)
Q Consensus 155 ~~i~iwd~~~~-------------------~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~~~~~ 199 (1324)
+.|.+||..+. .....++|+|||++|++++. ++.|.+|++..+..
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 88999998732 11234799999999877665 56899999887654
No 181
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.47 E-value=1.1e-11 Score=158.40 Aligned_cols=132 Identities=10% Similarity=0.159 Sum_probs=105.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCC-----eEEEEEcCCCeEEEEecCCCC------------------------CceEEE
Q psy12365 54 PGLCIVMDWDSEGDLLGIISSNSS-----AVNVWNTYTKKRTIVDSGLRD------------------------PLTCLV 104 (1324)
Q Consensus 54 ~~~i~~i~~~~d~~~l~~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 104 (1324)
...+.+++|||||++|++++..|+ .|++||+.+++.......+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 356899999999999999886456 899999999887766654432 278999
Q ss_pred EecCCCEEEE----EEEEEeCCCC---eEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------CC
Q psy12365 105 WCKQCSMLQL----SVSIYNKHGK---LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------TL 167 (1324)
Q Consensus 105 ~s~~~~~l~~----~i~v~d~~g~---~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~ 167 (1324)
|||||+.|++ .|++||..+. ....+. +.+.+..++|+|||++|++ ++ ++.|.+||+.+. ..
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999887 8999998754 444443 5678999999999999998 55 468999998732 11
Q ss_pred -----------------eeEEEEcCCCCEEEEEeCCC
Q psy12365 168 -----------------GERISWSDDGQLLAVTTSGG 187 (1324)
Q Consensus 168 -----------------i~~~~~s~~~~~l~~~~~dg 187 (1324)
+..+.|||||++|++++.|+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 47799999999999887653
No 182
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=2.1e-12 Score=142.06 Aligned_cols=220 Identities=13% Similarity=0.059 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC--------hHH
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS--------SVL 820 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~ 820 (1324)
++...+|..+...|++++|+..|++++..+|. +...+..++.++...|++++|++.++++.. ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 45678899999999999999999999999987 345677799999999999999999887622 446
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcC
Q psy12365 821 KNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMG 887 (1324)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g 887 (1324)
+..+|.++...|++++|+..|+++.. +..++.+|...|++++|+..+++.. .+.++..+|......+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 89999999999999999999999865 6678899999999999999998876 6778888994444556
Q ss_pred CHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCC---HHHHHHHHHHcCCHHHHHHH
Q psy12365 888 SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD---FGAAIHFLILSKCYQDAFNL 964 (1324)
Q Consensus 888 ~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~~~~~~~A~~l 964 (1324)
++++|++.|.++. .+.. ....+...+|.++...|+ +++|+..|.++ +++
T Consensus 157 ~~~~A~~~~~~a~------~~~p----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------~~~ 208 (272)
T 3u4t_A 157 EYVKADSSFVKVL------ELKP----------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL------IEV 208 (272)
T ss_dssp CHHHHHHHHHHHH------HHST----------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH------HHH
T ss_pred HHHHHHHHHHHHH------HhCc----------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH------HHH
Confidence 9999999998843 2111 234556778999999998 88899988766 222
Q ss_pred HHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 965 SQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 965 ~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
....+... . ......+..+|.+|...|++.+|..+|.++
T Consensus 209 ~~~~~~~~-~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 209 CAPGGAKY-K--------DELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HGGGGGGG-H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhcccccc-h--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21111100 0 001356777777766666666665555543
No 183
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.47 E-value=4.7e-13 Score=156.99 Aligned_cols=151 Identities=11% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCCCeeEEEEecCCCCEEE----EEeCCCcEEEEECCC---------cEE---EEEe-CCCCEEEEEEcCC-CCEEEEEE
Q psy12365 12 HGPGDVYVCWQRRTGELLA----TTGRDSSVSIYNKHG---------KLI---DKIT-LPGLCIVMDWDSE-GDLLGIIS 73 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~----~~~~~~~v~v~~~~~---------~~~---~~~~-~~~~i~~i~~~~d-~~~l~~~~ 73 (1324)
|...|.+++|+| +|++|+ +++.|+.|++||... +.+ ..+. |.+.|.+++|+|+ +..|++++
T Consensus 91 ~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 456799999999 999999 677899999999621 222 2222 6788999999998 78899998
Q ss_pred cCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEec--------CCcEEEEEE
Q psy12365 74 SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKITL--------PGLCIVMDW 140 (1324)
Q Consensus 74 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~~--------~~~i~~~~~ 140 (1324)
. ||+|++||+.++.......+|...|.+++|+|+|++|++ .|++||.+++....+.. ...+.++.|
T Consensus 170 ~-Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 170 A-DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp T-TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred C-CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEE
Confidence 8 999999999988666555678889999999999999988 89999998766655541 237999999
Q ss_pred cCCCCEEEEEEcCCCc------EEEeeccc
Q psy12365 141 DSEGDLLGIISSNSSA------VNVWTLLT 164 (1324)
Q Consensus 141 ~~~g~~l~~~~~~~~~------i~iwd~~~ 164 (1324)
++++.++++.++.+|. +.+|++.+
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9999888764555543 78999873
No 184
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.7e-12 Score=139.76 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|++++|+.+|.++... . . ..+.+..+|.++...|++++|+..|.+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~----------- 63 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-K-DITYLNNRAAAEYEKGEYETAISTLND----------- 63 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-C-CTHHHHHHHHHHHHTTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-c-cHHHHHHHHHHHHHcccHHHHHHHHHH-----------
Confidence 457899999999999999999999876332 2 3 567789999999999999999997755
Q ss_pred HHHhhHHHHHHHHHhcCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC
Q psy12365 727 RDLRQWREALALATSLGSN--QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD 804 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 804 (1324)
|+.......+. ....++..+|..+...|++++|+.+|++++...+. +.++.+.|+
T Consensus 64 --------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~ 120 (258)
T 3uq3_A 64 --------AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRN 120 (258)
T ss_dssp --------HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHH
T ss_pred --------HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhH
Confidence 33333222111 12578899999999999999999999999998885 567788899
Q ss_pred HHHHHHHHHhcCC-----hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC
Q psy12365 805 FRLGIRLAAESNS-----SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK 871 (1324)
Q Consensus 805 ~~~A~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~ 871 (1324)
+++|++.+++... ..++..+|.++...|++++|+..|+++.. +..++.+|...|++++|+..+++..
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999988632 67889999999999999999999999864 6677899999999999999988765
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 872 -----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 872 -----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
.+.++..+|.++...|++++|+..|.++.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67889999999999999999999999943
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=4e-12 Score=147.35 Aligned_cols=244 Identities=9% Similarity=-0.055 Sum_probs=174.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhc-CCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 693 SILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSL-GSNQTPIISCDYAQQLEMTGQHAQALSFY 771 (1324)
Q Consensus 693 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~y 771 (1324)
++..|..+...|++++|+..|.+ |+.+++.. +++....++..+|.++...|++++|+.+|
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~-------------------al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYRE-------------------AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-------------------HHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH-------------------HHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 46678888999999999997755 33333321 12234577899999999999999999999
Q ss_pred HHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHHHHH
Q psy12365 772 QKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDAVTL 840 (1324)
Q Consensus 772 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 840 (1324)
++++...+...........++..+|.+|...|++++|++.++++.+ ..++..+|.++..+|++++|+.+
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999876541111234567788899999999999999998877632 45788999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHH
Q psy12365 841 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV 920 (1324)
Q Consensus 841 y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~ 920 (1324)
|+++...... .+.. ....++..+|.++...|++++|+.+|.++ +.+..+ .+++....
T Consensus 245 ~~~al~~~~~------~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~-~~~~~~~~ 301 (378)
T 3q15_A 245 FQKAAKVSRE------KVPD----------LLPKVLFGLSWTLCKAGQTQKAFQFIEEG------LDHITA-RSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHH------HCGG----------GHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCCT-TCCSCHHH
T ss_pred HHHHHHHHHh------hCCh----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHH-cCCHHHHH
Confidence 9887643211 1110 12456778999999999999999999993 344332 22322111
Q ss_pred HHHHHhcChHHHHHHHHHHHHcCC---HHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHH
Q psy12365 921 DIVKAKKCTEGAKRIADYCNKHGD---FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFE 997 (1324)
Q Consensus 921 ~~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~ 997 (1324)
....++.++...++ +.+|+.++.+.+.+.. ....+..+|..|.
T Consensus 302 ----------~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~------------------------~~~~~~~la~~y~ 347 (378)
T 3q15_A 302 ----------LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY------------------------IEACARSAAAVFE 347 (378)
T ss_dssp ----------HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH------------------------HHHHHHHHHHHHH
Confidence 13467788888888 7788877776543322 1345567788888
Q ss_pred hcCCHHHHHHHHHHh
Q psy12365 998 EDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 998 ~~g~~~~A~~~y~~~ 1012 (1324)
..|++.+|..+|.++
T Consensus 348 ~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 348 SSCHFEQAAAFYRKV 362 (378)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888777665
No 186
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.46 E-value=2.3e-11 Score=138.18 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=135.9
Q ss_pred EEEecCCCCE-EEEEeCCCcEEEEEC-CCcEEEEEeC-CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE-EEEec
Q psy12365 19 VCWQRRTGEL-LATTGRDSSVSIYNK-HGKLIDKITL-PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR-TIVDS 94 (1324)
Q Consensus 19 ~~~sp~~g~~-l~~~~~~~~v~v~~~-~~~~~~~~~~-~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~-~~~~~ 94 (1324)
..|++ +++. +++.+.++.|.+||. +++....+.. ...+ +++|+|||+++++++..++.|.+||..+++. .....
T Consensus 3 ~~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 3 AMFQT-TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp ----C-CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred eeEcC-CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 34555 5555 666778899999997 5777777663 4455 9999999998888877688999999988876 55555
Q ss_pred CCCCCceEEEEecCCCEEEE--------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCc-EEEeeccc
Q psy12365 95 GLRDPLTCLVWCKQCSMLQL--------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSA-VNVWTLLT 164 (1324)
Q Consensus 95 ~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~-i~iwd~~~ 164 (1324)
.+..+..+++|+|+|+++++ .|.+||.. ++....+........++|+|||+++++.+..++. |.+|++..
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 56665555999999998888 59999986 6666777777778999999999866663566688 99998652
Q ss_pred --------------CCCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc
Q psy12365 165 --------------YTLGERISWSDDGQLLAVTT-SGGSVKIYLSKLPK 198 (1324)
Q Consensus 165 --------------~~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~~ 198 (1324)
...+..+.|+|||+++++++ .++.|.+|+.....
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 14578899999999776655 57899999986543
No 187
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=4.4e-13 Score=141.14 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=142.5
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.+..+|.++...|++++|+..|.++. ...|+.+.++..+|.++...|++++|+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 60 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERAL------------------------KENPQDPEALYWLARTQLKLGLVNPALE 60 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTSSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566788899999999999998776532 2345668889999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhc-----------CCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccC
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRV-----------GDFRLGIRLAAES----NS-SVLKNECADILQQFNK 833 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~ 833 (1324)
.|++++..+|+ +...+..++.++.+. |++++|++.+++. |+ ..++..+|.++..+|+
T Consensus 61 ~~~~al~~~P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 61 NGKTLVARTPR-------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCC-------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 99999999997 566677899999999 9999999998887 33 8899999999999999
Q ss_pred HHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 834 LNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 834 ~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+++|+..|+++.. +..++.+|...|++++|+..+++.. ++.++..+|.++...|++++|+..|.++.
T Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 134 RDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999854 5567789999999999999888764 67788899999999999999999998843
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=2.3e-12 Score=152.30 Aligned_cols=328 Identities=13% Similarity=0.055 Sum_probs=217.7
Q ss_pred HHHHHHhhcHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCH---HHHHHHHHHccchhHHHHHHHhhhcccchhhHHHH
Q psy12365 625 LHKVLKLLNWKEAWNICAVL---NQSETWRSFAEACLQNLEF---SWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGH 698 (1324)
Q Consensus 625 ~~~~l~~~~~~~A~~~~~~~---~~~~~~~~l~~~~l~~~~~---~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~ 698 (1324)
-..+++.|++++|++.++.. +++..+..||..+...|++ ++|+..|+++.+. .++..+.+|.
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------~~~A~~~Lg~ 77 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------------CHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------------CHHHHHHHHH
Confidence 45678899999999998865 6777888999999999988 8999998876432 2456678888
Q ss_pred HHHHcC-----CHHHHHHHHHhCCC---hH---HHHHHHHHHhhHH---HHHHHHHhcCCCCchHHHHHHHHHHHHcCC-
Q psy12365 699 VAALLG-----NHDTAQQRYLTSDI---PT---MALTLRRDLRQWR---EALALATSLGSNQTPIISCDYAQQLEMTGQ- 763 (1324)
Q Consensus 699 ~~~~~g-----~~~~A~~~~~~~~~---~~---~a~~~~~~~~~~~---~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~- 763 (1324)
++...+ ++++|+..|.++.+ ++ ....+|...+..+ +++..+....+.+.+.....+|.++...+.
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 666665 78999999987532 22 2234444444322 234444433334456778889999999884
Q ss_pred ---HHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC---CHHHHHHHHHhcCC-----hHHHHHHHHHHHHc-
Q psy12365 764 ---HAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG---DFRLGIRLAAESNS-----SVLKNECADILQQF- 831 (1324)
Q Consensus 764 ---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~-----~~~~~~l~~~~~~~- 831 (1324)
.++|..+++.+...++. ++..|+.+|...| ++++|++.+++..+ ...++.+|.+|...
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~----------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDI----------CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTT----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred ccCHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45555556666555552 5566899999999 99999999888722 45558899999765
Q ss_pred ---cCHHHHHHHHHHhcC-----HHHHHHH-H--HHcCCHHHHHhhhhccC---CHHHHHHHHHHHHHcC-----CHHHH
Q psy12365 832 ---NKLNDAVTLYESAGN-----YEKAATC-Y--IQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMG-----SYRES 892 (1324)
Q Consensus 832 ---g~~~~A~~~y~~~~~-----~~~~~~~-~--~~~~~~~~A~~~~~~~~---~~~~~~~~a~~~~~~g-----~~~~A 892 (1324)
+++++|+.+|+++.. ...++.+ | ...+++++|+.++++.. ++.....+|.+|. .| ++++|
T Consensus 228 ~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 799999999999862 3345555 4 46889999999998765 7889999999998 55 99999
Q ss_pred HHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH----cCCHHHHHHHHHHcCCHHHHHHHHHhc
Q psy12365 893 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCYQDAFNLSQQH 968 (1324)
Q Consensus 893 ~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~~~~~~~A~~l~~~~ 968 (1324)
+.+|.++- ..+..+.+.||.+|.. ..++++|+.+|.++
T Consensus 307 ~~~~~~Aa-------------------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A------------- 348 (452)
T 3e4b_A 307 EAHFEKAV-------------------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA------------- 348 (452)
T ss_dssp HHHHHTTT-------------------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-------------
T ss_pred HHHHHHHh-------------------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-------------
Confidence 99998833 1455667889988887 44899999999887
Q ss_pred cchhHhhhhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh--CCHHHHHHHHHhh
Q psy12365 969 KKLHEFGKFLLEEDEPNPVELKRLAIHFEE----DKDMFRAAQYYYHA--KEYGRAMKLLLVT 1025 (1324)
Q Consensus 969 ~~~~~~~~~l~l~~~~~~~~~~~la~~~~~----~g~~~~A~~~y~~~--g~~~~A~~~~~~~ 1025 (1324)
. ...++.+.+.||..|.. ..++.+|..+|.++ .....|...+...
T Consensus 349 -----------a-~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l 399 (452)
T 3e4b_A 349 -----------A-RNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQL 399 (452)
T ss_dssp -----------H-TTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----------H-hhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 12556788899999875 45788888888876 2234455444443
No 189
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.44 E-value=1.1e-11 Score=141.85 Aligned_cols=183 Identities=13% Similarity=0.219 Sum_probs=133.6
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEECC--Cc--EEEEEeCC----------CCEEEEEEcCCCCEEEEEEcC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTG-RDSSVSIYNKH--GK--LIDKITLP----------GLCIVMDWDSEGDLLGIISSN 75 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~--~~--~~~~~~~~----------~~i~~i~~~~d~~~l~~~~~~ 75 (1324)
.+...+..++|+| +|++|++++ .++.|.+|+.. |. .+..+.+. ..+.+++|+|||+ ++++...
T Consensus 83 ~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 83 APGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred cCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 3567789999999 999988888 67899999973 33 23333332 1388899999999 5555554
Q ss_pred CCeEEEEEcC-CCeEEEE---ecCCCCCceEEEEecCCCEEEE------EEEEEeCC---CCeE--EEEe-cC------C
Q psy12365 76 SSAVNVWNTY-TKKRTIV---DSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH---GKLI--DKIT-LP------G 133 (1324)
Q Consensus 76 d~~i~iw~~~-~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~---g~~~--~~~~-~~------~ 133 (1324)
++.|.+|++. +++.... .......+..++|+|+|+++++ .+.+|+.+ |+.. ..+. .. .
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 8899999998 5544322 1123336788999999997665 88899865 3321 1222 12 4
Q ss_pred cEEEEEEcCCCCEEEEEEcCCCcEEEeecc-c--C----------CCeeEEEEcCCCCEEEEEeCC-CcEEEEEcC
Q psy12365 134 LCIVMDWDSEGDLLGIISSNSSAVNVWTLL-T--Y----------TLGERISWSDDGQLLAVTTSG-GSVKIYLSK 195 (1324)
Q Consensus 134 ~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~-~--~----------~~i~~~~~s~~~~~l~~~~~d-g~i~~~~~~ 195 (1324)
.+..++|+|||+++++.+..++.|.+|++. . . ..+..++|+|||++|++++.+ +.+.+|+++
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 588899999999886636678999999986 1 1 357889999999999888765 889999764
No 190
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.44 E-value=6.8e-12 Score=143.44 Aligned_cols=180 Identities=11% Similarity=0.157 Sum_probs=136.1
Q ss_pred CeeEEEEecCCCCEEEEEeC-CCcEEEEEC-CC---cEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC-Ce
Q psy12365 15 GDVYVCWQRRTGELLATTGR-DSSVSIYNK-HG---KLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT-KK 88 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~-~~~v~v~~~-~~---~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~-~~ 88 (1324)
.+..++|+| +|+++++++. ++.|.+||. ++ .....+.....+.+++|+|||+.+++++..++.|.+||+.+ ++
T Consensus 85 ~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 788999999 9998877765 788999998 33 33344445567889999999999988884489999999987 65
Q ss_pred EEE-----EecCCCCCceEEEEecCCCEEEE------EEEEEeCC---CCe--EEEEe-c------CCcEEEEEEcCCCC
Q psy12365 89 RTI-----VDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH---GKL--IDKIT-L------PGLCIVMDWDSEGD 145 (1324)
Q Consensus 89 ~~~-----~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~---g~~--~~~~~-~------~~~i~~~~~~~~g~ 145 (1324)
... ........+..++|+|+|+.+++ .+.+|+.+ |+. ...+. . ...+..++|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 22223456889999999997755 89999985 332 22222 1 23567899999999
Q ss_pred EEEEEEcCCCcEEEeecc--cC-----------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy12365 146 LLGIISSNSSAVNVWTLL--TY-----------TLGERISWSDDGQLLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~--~~-----------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~ 195 (1324)
++++.+..++.|.+||+. +. ..+..++|+|+|++|++++ .++.+.+|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 887636688999999987 11 3477899999999998887 57999999754
No 191
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.44 E-value=8.1e-12 Score=142.35 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=132.7
Q ss_pred CeeEEEEecCCCCEEEEE-eCCCcEEEEEC-CCcEEEEEeCCC------CEEEEEEcCCCCEEEEEEc-----------C
Q psy12365 15 GDVYVCWQRRTGELLATT-GRDSSVSIYNK-HGKLIDKITLPG------LCIVMDWDSEGDLLGIISS-----------N 75 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~-~~~~~v~v~~~-~~~~~~~~~~~~------~i~~i~~~~d~~~l~~~~~-----------~ 75 (1324)
.+..++|+| +|+.++++ +.++.|.+||. +++.+..+.... .+.+++|+|||+.++++.. .
T Consensus 35 ~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 478899999 99876554 55789999997 667777776433 6778999999999988861 2
Q ss_pred CCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE---EEEEEeCC-CCeEEEEecC-------------------
Q psy12365 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL---SVSIYNKH-GKLIDKITLP------------------- 132 (1324)
Q Consensus 76 d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~---~i~v~d~~-g~~~~~~~~~------------------- 132 (1324)
++.|.+||..+++....+.. ...+.++.|+|+|+.+++ .|.+||.. ++....+...
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 192 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence 69999999998877665543 455788999999997776 88899876 3333333211
Q ss_pred ------------------------------------------------CcEEEEEEcCCCCEEEEEEcCCCcEEEeeccc
Q psy12365 133 ------------------------------------------------GLCIVMDWDSEGDLLGIISSNSSAVNVWTLLT 164 (1324)
Q Consensus 133 ------------------------------------------------~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~ 164 (1324)
..+..++|+|||+++++ + ++.|.+||..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~--~~~v~~~d~~~ 269 (337)
T 1pby_B 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-A--YNVLESFDLEK 269 (337)
T ss_dssp TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE-E--ESEEEEEETTT
T ss_pred cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEE-e--CCeEEEEECCC
Confidence 12345788888888877 5 67888888763
Q ss_pred C---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 165 Y---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 165 ~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
. ..+.++.|+|||++|++++.++.|.+|+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 270 NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 2 45677888888888888877888888887654
No 192
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=1.2e-11 Score=136.26 Aligned_cols=219 Identities=12% Similarity=0.022 Sum_probs=147.0
Q ss_pred HHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC--hHHHHHHHHHHHHccC
Q psy12365 756 QQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS--SVLKNECADILQQFNK 833 (1324)
Q Consensus 756 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~l~~~~~~~g~ 833 (1324)
+..+..|+|.+|+...++.....|+ ........++++|+..|+++.|+..++...+ ..++..++.++...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~------~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE------RDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch------hhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 4456778888888888887766663 2223444578888888888888887766533 5566778888888888
Q ss_pred HHHHHHHHHHhc----C------HHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChH
Q psy12365 834 LNDAVTLYESAG----N------YEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD 903 (1324)
Q Consensus 834 ~~~A~~~y~~~~----~------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~ 903 (1324)
+++|+..|+++. . +..++.+|...|++++|++.+++-.+..++..+|.++...|++++|++.|+++.+.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 888888888752 1 445667888888999998888885578888888888888899999988888864321
Q ss_pred --HH-HHH------HHhccCCHHHHHHHHHH-----hcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy12365 904 --NV-VRV------DLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 969 (1324)
Q Consensus 904 --~a-~~~------~~~~~~~~~~a~~~~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~ 969 (1324)
.. ..+ .....++.+.|..++++ +.+......+|.++.+.|++++|+..|.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a-------------- 226 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA-------------- 226 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------
Confidence 10 010 00112445555554443 244555666677777777777777666655
Q ss_pred chhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHH
Q psy12365 970 KLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFR 1004 (1324)
Q Consensus 970 ~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~ 1004 (1324)
+. .|.+++++..+|..+...|++.+
T Consensus 227 ----------l~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 227 ----------LDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp ----------HHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred ----------HHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 22 45666666666666655555543
No 193
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=5.1e-12 Score=138.96 Aligned_cols=207 Identities=11% Similarity=0.055 Sum_probs=165.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH----cCCHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEM----TGQHA 765 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~ 765 (1324)
++.+..+|.++...|++++|+..|.++. + ++.+.++..+|.++.. .|+++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~-------------------~-------~~~~~a~~~lg~~~~~g~~~~~~~~ 59 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKAC-------------------D-------LKENSGCFNLGVLYYQGQGVEKNLK 59 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHH-------------------H-------CCCHHHHHHHHHHHHcCCCcCCCHH
Confidence 4556788999999999999998876532 1 3345677888888888 89999
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHh----cCCHHHHHHHHHhcC---ChHHHHHHHHHHHH----ccCH
Q psy12365 766 QALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR----VGDFRLGIRLAAESN---SSVLKNECADILQQ----FNKL 834 (1324)
Q Consensus 766 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~g~~ 834 (1324)
+|+.+|++++.... ..++..++.+|.. .+++++|++++++.. ...++..+|.+|.. .+++
T Consensus 60 ~A~~~~~~a~~~~~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 60 KAASFYAKACDLNY---------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp HHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCH
Confidence 99999999887643 4556668888888 899999988888763 37888889999988 8999
Q ss_pred HHHHHHHHHhcC------HHHHHHHHHH----cCCHHHHHhhhhccC---CHHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy12365 835 NDAVTLYESAGN------YEKAATCYIQ----LKNWTKIGQLLPHIK---SATTFIQYAKAKEA----MGSYRESVGAYE 897 (1324)
Q Consensus 835 ~~A~~~y~~~~~------~~~~~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~a~~~~~----~g~~~~A~~~y~ 897 (1324)
++|+.+|+++.+ +..++.+|.. .+++++|+.++++.. .+..+..+|.++.. .+++++|+..|.
T Consensus 131 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 131 KKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 999999988754 4456677877 889999988887764 67888999999999 999999999999
Q ss_pred HhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH----cCCHHHHHHHHHHc
Q psy12365 898 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLILS 955 (1324)
Q Consensus 898 ~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~~ 955 (1324)
++.+ . ....+...+|.+|.+ .+++++|+++|.++
T Consensus 211 ~a~~-----------~-------------~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 211 KACE-----------L-------------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHH-----------T-------------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHh-----------C-------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 8442 1 223457789999999 99999999999887
No 194
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=3.3e-12 Score=148.47 Aligned_cols=228 Identities=12% Similarity=0.055 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHH
Q psy12365 650 WRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDL 729 (1324)
Q Consensus 650 ~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~ 729 (1324)
+...|..+...|+++.|+..|.++...... +..-.. ....+..+|.++...|++++|+..|.+
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~-~a~~~~~lg~~~~~~~~~~~A~~~~~~-------------- 168 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIF--VKDRIE-KAEFFFKMSESYYYMKQTYFSMDYARQ-------------- 168 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGG--CCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--CCCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH--------------
Confidence 344899999999999999999987543110 000001 345678899999999999999997644
Q ss_pred hhHHHHHHHHHhcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHH
Q psy12365 730 RQWREALALATSLG--SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRL 807 (1324)
Q Consensus 730 ~~~~~Al~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 807 (1324)
|+.+++... .+....++..+|.++...|+|++|+++|++++...+... +......++.++|.+|...|++++
T Consensus 169 -----al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 169 -----AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -----HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHH
Confidence 445544432 123446788999999999999999999999998755310 223445678889999999999999
Q ss_pred HHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHhcCH-------------HHHHHHHHHcCC---H
Q psy12365 808 GIRLAAESNS-----------SVLKNECADILQQFNKLNDAVTLYESAGNY-------------EKAATCYIQLKN---W 860 (1324)
Q Consensus 808 A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~-------------~~~~~~~~~~~~---~ 860 (1324)
|++.++++.. ..++..+|.++..+|++++|..+|+++... ..++.+|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9998877522 557889999999999999999999998652 345677888888 8
Q ss_pred HHHHhhhhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 861 TKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 861 ~~A~~~~~~~~----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
++|+.++++.. ...++..+|.++...|++++|+.+|.++.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999887 34467779999999999999999999943
No 195
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.42 E-value=4.3e-12 Score=141.51 Aligned_cols=162 Identities=14% Similarity=0.201 Sum_probs=129.2
Q ss_pred EeCCCcEEEEECCCcEEE-EEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC-CeEEEEecCC-CCCceEEEEecC
Q psy12365 32 TGRDSSVSIYNKHGKLID-KITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT-KKRTIVDSGL-RDPLTCLVWCKQ 108 (1324)
Q Consensus 32 ~~~~~~v~v~~~~~~~~~-~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~s~~ 108 (1324)
.+.++.|++||..+.... ...+.+.+.+++|+|||++|++++ ++.|++||+.+ ++...+..++ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 356889999998554444 444888999999999999999876 68999999998 7776666555 367899999999
Q ss_pred CCEEEE---------EEEEEeCCCCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc--cC---------CCe
Q psy12365 109 CSMLQL---------SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL--TY---------TLG 168 (1324)
Q Consensus 109 ~~~l~~---------~i~v~d~~g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~--~~---------~~i 168 (1324)
|+.|++ .|..|+..+.....+.....+..++|+|||+.+++.+..++.+.||+++ +. ..+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 999887 4555566665566666666789999999999888547788999999865 11 568
Q ss_pred eEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy12365 169 ERISWSDDGQLLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 169 ~~~~~s~~~~~l~~~~-~dg~i~~~~~~ 195 (1324)
..+.|+|+|++|++++ .++.+.+|+..
T Consensus 176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccceECCCCCEEEEEecCCCCccEEEEC
Confidence 8999999999888776 48889999865
No 196
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.41 E-value=3.7e-11 Score=137.89 Aligned_cols=184 Identities=15% Similarity=0.051 Sum_probs=143.9
Q ss_pred CCeeEEEEecCCCCEEEEEe-CCCcEEEEEC-CCcEEEEEeCCC----------CEEEEEEcCCCCEEEEEE-cCCCeEE
Q psy12365 14 PGDVYVCWQRRTGELLATTG-RDSSVSIYNK-HGKLIDKITLPG----------LCIVMDWDSEGDLLGIIS-SNSSAVN 80 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~-~~~~~~~~~~~~----------~i~~i~~~~d~~~l~~~~-~~d~~i~ 80 (1324)
..+..++|+| +|+++++++ .++.|.+||. +++.+..+.... .+.++.|+|||+.++++. ..++.|.
T Consensus 89 ~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 89 LKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 4477899999 999665554 5789999998 677777777321 278899999999888877 3378899
Q ss_pred EEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEec-----CCcEEEEEEcCCCCEEEE
Q psy12365 81 VWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITL-----PGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~-----~~~i~~~~~~~~g~~l~~ 149 (1324)
+||..+++....+..+...+.++.|+|+|+.+++ .+.+||.. ++....+.. ...+..++|+|+|+.+++
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 9999999887777656666889999999998877 89999976 555555553 445788999999998877
Q ss_pred EEcCCCcEEEeecccC--------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc
Q psy12365 150 ISSNSSAVNVWTLLTY--------TLGERISWSDDGQLLAVTT-SGGSVKIYLSKLPK 198 (1324)
Q Consensus 150 ~~~~~~~i~iwd~~~~--------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~~ 198 (1324)
....++.|.+||..+. .....+.|+|+|++++++. .++.|.+|+.....
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 3556699999998733 3345689999999777666 68999999986543
No 197
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=1.4e-10 Score=147.26 Aligned_cols=145 Identities=11% Similarity=0.160 Sum_probs=106.8
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-CCC-----CEEEEEEcCCCCEEEEEEcCC--------
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-LPG-----LCIVMDWDSEGDLLGIISSNS-------- 76 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~~~-----~i~~i~~~~d~~~l~~~~~~d-------- 76 (1324)
+.....+++|+| ||++++++ +++|++||. +|+....+. +.. ....+.|||||+.|++++. +
T Consensus 15 ~~~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~-~~~~~r~~~ 90 (740)
T 4a5s_A 15 YRLKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN-YVKQWRHSY 90 (740)
T ss_dssp SCCCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE-EEECSSSCE
T ss_pred ccccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC-CeeeEEEcc
Confidence 344567899999 99988875 899999998 455555555 321 2245899999999999876 4
Q ss_pred -CeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEecCCc---E-------------
Q psy12365 77 -SAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITLPGL---C------------- 135 (1324)
Q Consensus 77 -~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~~~~---i------------- 135 (1324)
+.+.+||+.+++... +..+.+.+..++|||||+.|+. +|.+|+..+.....++..+. +
T Consensus 91 ~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred ceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 567899999988754 4567788999999999999988 99999987555555553331 2
Q ss_pred ----EEEEEcCCCCEEEEEEcCCCcEEEee
Q psy12365 136 ----IVMDWDSEGDLLGIISSNSSAVNVWT 161 (1324)
Q Consensus 136 ----~~~~~~~~g~~l~~~~~~~~~i~iwd 161 (1324)
..+.|||||+.|++....++.+.+|+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence 24899999999998333333344443
No 198
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.40 E-value=1.9e-11 Score=147.46 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=140.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEC---CCcEEEEEeCCCCEEEEEEcC----CCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNK---HGKLIDKITLPGLCIVMDWDS----EGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~---~~~~~~~~~~~~~i~~i~~~~----d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
+..++|+| ||++|++++.++.|.+||. +++.+..+.+...+.+++|+| ||+++++++..+++|.+||..+++
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 88999999 9999999999999999998 567777888777889999999 999999988558999999999888
Q ss_pred EEEEecC----------CCC-CceEEEEecCCCEEEE------EEEEEeCC-CCeE--EEEecCCcEEEEEEcCCCCEEE
Q psy12365 89 RTIVDSG----------LRD-PLTCLVWCKQCSMLQL------SVSIYNKH-GKLI--DKITLPGLCIVMDWDSEGDLLG 148 (1324)
Q Consensus 89 ~~~~~~~----------~~~-~v~~~~~s~~~~~l~~------~i~v~d~~-g~~~--~~~~~~~~i~~~~~~~~g~~l~ 148 (1324)
+...+.. |.+ .+..+.++|++..+++ .|.+||.. ++.. ..+.+...+..+.|+|+|++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 7766643 223 6889999998877665 89999976 3322 3555666788899999999877
Q ss_pred EEEcCCCcEEEeecccC--------C---Ce-eEEE-EcCC-CCEEEEEe-CCCcEEEEEcCC
Q psy12365 149 IISSNSSAVNVWTLLTY--------T---LG-ERIS-WSDD-GQLLAVTT-SGGSVKIYLSKL 196 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~--------~---~i-~~~~-~s~~-~~~l~~~~-~dg~i~~~~~~~ 196 (1324)
+.+..+++|.+||..+. + .. ..+. ++|+ |..++++. .|++|.+|++..
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 63667899999999843 0 00 1222 3677 55555554 579999999765
No 199
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=2.7e-12 Score=146.26 Aligned_cols=202 Identities=8% Similarity=0.046 Sum_probs=163.2
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC-HHHHHHHHHhcC----C-hH
Q psy12365 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD-FRLGIRLAAESN----S-SV 819 (1324)
Q Consensus 746 ~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~----~-~~ 819 (1324)
+...++..+|.++...|++++|+..|++++..+|. +..++..++.++.++|+ +++|++.++++. + ..
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 34577888999999999999999999999999998 56777789999999996 999999998872 2 88
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHH-
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEA- 885 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~- 885 (1324)
+|+.+|.++..+|++++|+..|+++.. +...+.++...|++++|+..+++.. +..++..+|.++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999875 6677889999999999999888775 67899999999999
Q ss_pred cCCHHHHH-----HHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcC--CHHHHHHHHHHcCCH
Q psy12365 886 MGSYRESV-----GAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG--DFGAAIHFLILSKCY 958 (1324)
Q Consensus 886 ~g~~~~A~-----~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g--~~~~Ai~~~~~~~~~ 958 (1324)
.|.+++|+ .+|.++. .+ ...+..+...++.++...| ++++|++.+.+.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al------~l----------------~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--- 302 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMI------KL----------------VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--- 302 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHH------HH----------------STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH---
T ss_pred cCcchHHHHHHHHHHHHHHH------HH----------------CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh---
Confidence 66658884 6666622 21 1244556778888888888 688887765433
Q ss_pred HHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcC
Q psy12365 959 QDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 1000 (1324)
Q Consensus 959 ~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g 1000 (1324)
-..+..+.++..+|.+|..+|
T Consensus 303 ---------------------~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 303 ---------------------QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp ---------------------TTTCCCHHHHHHHHHHHHHHH
T ss_pred ---------------------ccCCCCHHHHHHHHHHHHHHh
Confidence 114577888999998887754
No 200
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.38 E-value=2.6e-11 Score=138.72 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=130.8
Q ss_pred CCCCeeEEEEecCCCCEEEEEeC---CCcEEEEECCCcE---EEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGR---DSSVSIYNKHGKL---IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~---~~~v~v~~~~~~~---~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
+...+..++|+| ||+ +++++. ++.|.+|+..+.. +..+. +...+..++|+|||+++++++..++.|.+|++
T Consensus 38 ~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 456678899999 999 555543 6899999984432 33322 56678899999999999998855899999998
Q ss_pred C-CCeEE--EEecC---------CCCCceEEEEecCCCEEEE-----EEEEEeCC--CCeEEE--Ee--cCCcEEEEEEc
Q psy12365 85 Y-TKKRT--IVDSG---------LRDPLTCLVWCKQCSMLQL-----SVSIYNKH--GKLIDK--IT--LPGLCIVMDWD 141 (1324)
Q Consensus 85 ~-~~~~~--~~~~~---------~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g~~~~~--~~--~~~~i~~~~~~ 141 (1324)
. ++... ..... ....+.+++|+|+|+++++ .|.+|+.. |+.... +. ....+..++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 5 33322 22111 1124788999999995544 89999976 443321 12 23367889999
Q ss_pred CCCCEEEEEEcCCCcEEEeeccc--C------------------CCeeEEEEcCCCCEEEE-EeCCCcEEEEEcC
Q psy12365 142 SEGDLLGIISSNSSAVNVWTLLT--Y------------------TLGERISWSDDGQLLAV-TTSGGSVKIYLSK 195 (1324)
Q Consensus 142 ~~g~~l~~~~~~~~~i~iwd~~~--~------------------~~i~~~~~s~~~~~l~~-~~~dg~i~~~~~~ 195 (1324)
|||+++++.+..++.|.+|+++. . ..+..++|+|||++|++ ...++.|.+|++.
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 99997776467889999998762 1 12667999999998855 4568999999975
No 201
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=4.9e-12 Score=129.47 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=132.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~ 821 (1324)
.+.+|..+|..+..+|+|++|++.|+++++.+|+ +..++..+|.+|.+.|++++|++.+.+. +. ..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY 76 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence 4578899999999999999999999999999997 5667778999999999999999988876 22 7888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCC
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGS 888 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~ 888 (1324)
..+|..+...+++++|...++++.. +..++.+|.+.|++++|++.+++.. ++.++..+|.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 9999999999999999999999864 5567899999999999999988765 77899999999999999
Q ss_pred HHHHHHHHHHhhC
Q psy12365 889 YRESVGAYERAED 901 (1324)
Q Consensus 889 ~~~A~~~y~~a~~ 901 (1324)
+++|++.|.++.+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999653
No 202
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=2.3e-12 Score=146.89 Aligned_cols=213 Identities=8% Similarity=-0.045 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCC-HHHHHHHHHhCCChHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGN-HDTAQQRYLTSDIPTMALTL 725 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~~~~~~a~~~ 725 (1324)
...|..+|..+...|++++|+.+|.++.. .-.. ....+..+|.++..+|+ +++|+..|.++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--------l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-------- 159 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--------LNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAII-------- 159 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--------hCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------
Confidence 35678889999999999999999887632 2222 45678899999999997 999999775532
Q ss_pred HHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH
Q psy12365 726 RRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805 (1324)
Q Consensus 726 ~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 805 (1324)
. ..+....++..+|.++...|++++|+..|++++..+|. +..++..++.++.++|++
T Consensus 160 -----------~-----l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-------~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 160 -----------E-----EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------NYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp -----------H-----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCC
T ss_pred -----------H-----HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------CHHHHHHHHHHHHHcCCh
Confidence 2 23556788999999999999999999999999999998 667778899999999999
Q ss_pred HHHHHHHHhcC----C-hHHHHHHHHHHHH-ccCHHHH-----HHHHHHhcC--------HHHHHHHHHHcC--CHHHHH
Q psy12365 806 RLGIRLAAESN----S-SVLKNECADILQQ-FNKLNDA-----VTLYESAGN--------YEKAATCYIQLK--NWTKIG 864 (1324)
Q Consensus 806 ~~A~~~~~~~~----~-~~~~~~l~~~~~~-~g~~~~A-----~~~y~~~~~--------~~~~~~~~~~~~--~~~~A~ 864 (1324)
++|++.++++. + ..+|+.+|.++.. .|.+++| +.+|+++.. +..++.+|...| ++++|+
T Consensus 217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 99999988872 2 8899999999999 5655777 488888764 555667777777 688888
Q ss_pred hhhhccC----CHHHHHHHHHHHHHcC---------CHHHHHHHHHHh
Q psy12365 865 QLLPHIK----SATTFIQYAKAKEAMG---------SYRESVGAYERA 899 (1324)
Q Consensus 865 ~~~~~~~----~~~~~~~~a~~~~~~g---------~~~~A~~~y~~a 899 (1324)
+.+++.. ++.++..+|.+|..+| .+++|+++|.++
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 8877653 6778888999998874 358999999885
No 203
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.36 E-value=7.2e-12 Score=159.01 Aligned_cols=176 Identities=11% Similarity=0.134 Sum_probs=135.8
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC-----C
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT-----K 87 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~-----~ 87 (1324)
..|.+++||| | ..++++. ++.|++||..+.....+. +.+.+.+++|||||+.|+++ . ++.|++|++.+ +
T Consensus 82 ~~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~-~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-R-NHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-E-TTEEEEEECBCTTSCCC
T ss_pred cCceeEEECC-C-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-E-CCeEEEEecCcccccCC
Confidence 5699999999 9 6666654 599999998655444444 66778899999999999996 4 79999999988 7
Q ss_pred eEEEEecCCCCC--------------ceEEEEecCCCEEEE-E-------------------------------------
Q psy12365 88 KRTIVDSGLRDP--------------LTCLVWCKQCSMLQL-S------------------------------------- 115 (1324)
Q Consensus 88 ~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~-~------------------------------------- 115 (1324)
+...+...+... +.++.|||||+.|++ .
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 666544333332 488999999999876 3
Q ss_pred EEEEeCCCCeEEEEe----cCCcEEEEEEcCCCCEEEEEEcCCC-----cEEEeecccC------------C---CeeEE
Q psy12365 116 VSIYNKHGKLIDKIT----LPGLCIVMDWDSEGDLLGIISSNSS-----AVNVWTLLTY------------T---LGERI 171 (1324)
Q Consensus 116 i~v~d~~g~~~~~~~----~~~~i~~~~~~~~g~~l~~~~~~~~-----~i~iwd~~~~------------~---~i~~~ 171 (1324)
|.+||..+.....+. +...+..++|+|||+.|++ ++.++ .|.+||..+. . .+..+
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV-AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE-EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE-EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 788998765544443 3467899999999999988 55554 8899998632 1 13567
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEEcC
Q psy12365 172 SWSD--DGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 172 ~~s~--~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.|+| ||+++++++.+|.+++|..+
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eeecCCCCEEEEEEccCCccEEEEEE
Confidence 9999 99999999899999998764
No 204
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=2.7e-11 Score=144.10 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=165.8
Q ss_pred HHHHHHHHHh--cCCCCchHHHHHHHHHHHHcCCH-HHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHH
Q psy12365 732 WREALALATS--LGSNQTPIISCDYAQQLEMTGQH-AQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLG 808 (1324)
Q Consensus 732 ~~~Al~~~~~--~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 808 (1324)
+++|+..++. ..++....++..+|..+...|+| ++|+++|++++..+|. +..++..+|.+|.+.|++++|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-------LVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHH
Confidence 3444444433 23456778999999999999999 9999999999999997 466777899999999999999
Q ss_pred HHHHHhc----CChHHHHHHHHHHHHc---------cCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHH
Q psy12365 809 IRLAAES----NSSVLKNECADILQQF---------NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATT 875 (1324)
Q Consensus 809 ~~~~~~~----~~~~~~~~l~~~~~~~---------g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 875 (1324)
++.++++ ++..++..+|.++..+ |++++|+..|+++... .-.++.+
T Consensus 157 ~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~ 215 (474)
T 4abn_A 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---------------------DVLDGRS 215 (474)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---------------------CTTCHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---------------------CCCCHHH
Confidence 9999887 3378889999999999 8888888888776531 1125677
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHH
Q psy12365 876 FIQYAKAKEAM--------GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGA 947 (1324)
Q Consensus 876 ~~~~a~~~~~~--------g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~ 947 (1324)
+..+|.++... |++++|+++|.++.. + +|. ......++..+|.+|...|++++
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~------~p~-------~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK------V------DRK-------ASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH------H------CGG-------GGGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------h------CCC-------cccCHHHHHHHHHHHHHcCCHHH
Confidence 88899999988 999999999999442 2 110 11355667899999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 948 AIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 948 Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
|++.|.++ +. .|..+.++..++..+...|++.+|...|.+.
T Consensus 277 A~~~~~~a------------------------l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 277 ALEGFSQA------------------------AALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH------------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH------------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999887 22 5677888999998888887777777766555
No 205
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.8e-11 Score=141.80 Aligned_cols=230 Identities=12% Similarity=0.039 Sum_probs=176.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHH
Q psy12365 649 TWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRD 728 (1324)
Q Consensus 649 ~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~ 728 (1324)
.|...|..+...|+++.|+..|.++...... +..-.. ....+..+|.++...|++++|...|.+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~-~a~~~~~lg~~y~~~~~~~~A~~~~~~------------- 166 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPF--VSDDIE-KAEFHFKVAEAYYHMKQTHVSMYHILQ------------- 166 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG--CCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh--CCChHH-HHHHHHHHHHHHHHcCCcHHHHHHHHH-------------
Confidence 4667899999999999999999987543110 000011 345678899999999999999997644
Q ss_pred HhhHHHHHHHHHhcCC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHH
Q psy12365 729 LRQWREALALATSLGS--NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFR 806 (1324)
Q Consensus 729 ~~~~~~Al~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 806 (1324)
|+.+...... .....++..+|.++...|+|++|+++|++++...+... ++.....++.++|.+|...|+++
T Consensus 167 ------al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 167 ------ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-NDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp ------HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCCHH
Confidence 4444444221 23456788999999999999999999999988643200 12345667888999999999999
Q ss_pred HHHHHHHhcCC----------hHHHHHHHHHHHHccCHHHHHHHHHHhcC-------------HHHHHHHHHHcCC---H
Q psy12365 807 LGIRLAAESNS----------SVLKNECADILQQFNKLNDAVTLYESAGN-------------YEKAATCYIQLKN---W 860 (1324)
Q Consensus 807 ~A~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------------~~~~~~~~~~~~~---~ 860 (1324)
+|+++++++.. ..++..+|.++..+|++++|..+|+++.. +..+..+|...++ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99998887632 56788999999999999999999999864 3334466777777 8
Q ss_pred HHHHhhhhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhC
Q psy12365 861 TKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERAED 901 (1324)
Q Consensus 861 ~~A~~~~~~~~----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~ 901 (1324)
.+|+.++++.. ...++..+|.++...|++++|+.+|.++.+
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998876 344667799999999999999999999543
No 206
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.34 E-value=4.1e-11 Score=137.25 Aligned_cols=179 Identities=8% Similarity=-0.004 Sum_probs=134.6
Q ss_pred CeeEEEEecCCCCEEEEE-eCCCcEEEEEC-CCcEEEEEeCCC-------CEEEEEEcCCCCEEEEEEcC----------
Q psy12365 15 GDVYVCWQRRTGELLATT-GRDSSVSIYNK-HGKLIDKITLPG-------LCIVMDWDSEGDLLGIISSN---------- 75 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~-~~~~~v~v~~~-~~~~~~~~~~~~-------~i~~i~~~~d~~~l~~~~~~---------- 75 (1324)
.+..++|+| +|++++++ ..++.|.+||. +++....+.... .+.+++|+|||++++++...
T Consensus 44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccccc
Confidence 578999999 99876554 46889999998 466666666322 27889999999999998862
Q ss_pred -CCeEEEEEcCCCe---EEEEecCCCCCceEEEEecCCCEEEE--EEEEEeCC-CCeEEEEecC----------------
Q psy12365 76 -SSAVNVWNTYTKK---RTIVDSGLRDPLTCLVWCKQCSMLQL--SVSIYNKH-GKLIDKITLP---------------- 132 (1324)
Q Consensus 76 -d~~i~iw~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~--~i~v~d~~-g~~~~~~~~~---------------- 132 (1324)
++.|.+||+.+++ ...... +...+.+++|+|+|+.++. .|.+||.. ++....+...
T Consensus 123 ~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred CCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 3899999988743 222332 3446889999999994444 89999975 5555444322
Q ss_pred -----------------------------------------------------CcEEEEEEcC-CCCEEEEEEcCCCcEE
Q psy12365 133 -----------------------------------------------------GLCIVMDWDS-EGDLLGIISSNSSAVN 158 (1324)
Q Consensus 133 -----------------------------------------------------~~i~~~~~~~-~g~~l~~~~~~~~~i~ 158 (1324)
..+..++|+| ||+++++ + ++.|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~-~--~~~v~ 278 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-V--LNRLA 278 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-E--ESEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE-E--cCeEE
Confidence 1345677889 9999988 6 88999
Q ss_pred EeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy12365 159 VWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLPK 198 (1324)
Q Consensus 159 iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~~ 198 (1324)
+||+.+. ..+..++|+|||++|++++.++.|.+|+.....
T Consensus 279 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred EEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 9998732 457889999999999888888999999986543
No 207
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=4.9e-12 Score=136.29 Aligned_cols=180 Identities=11% Similarity=0.073 Sum_probs=129.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~ 821 (1324)
.+..+..+|..+...|++++|+.+|++++...|. +...+..++.++...|++++|++.++++. . ..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-------DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH
Confidence 3466778888888899999999999999888886 35566678888899999999998887762 2 7788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCC
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGS 888 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~ 888 (1324)
..+|.++...|++++|..+|+++.. +..++.+|...|++++|+.++++.. +..++..+|.++...|+
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence 8889999999999999999988754 4556788888999999988887654 67788889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 889 YRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 889 ~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+++|++.|.++.+ .. .........+|.++...|++++|+++|.++
T Consensus 175 ~~~A~~~~~~~~~------~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 175 LDEALSQFAAVTE------QD----------------PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp CHHHHHHHHHHHH------HC----------------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hC----------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988431 10 123445778999999999999999998877
No 208
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=1.5e-11 Score=135.38 Aligned_cols=185 Identities=9% Similarity=-0.040 Sum_probs=142.7
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHH
Q psy12365 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVL 820 (1324)
Q Consensus 746 ~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~ 820 (1324)
..+.++..+|..+...|++++|+.+|++++..+|. +...+..+|.++...|++++|++.++++ +. ..+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 113 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHH
Confidence 34577889999999999999999999999999887 4566777999999999999999998887 22 788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhccC----CHHHHHHHHHHHHHcCCH
Q psy12365 821 KNECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSY 889 (1324)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~a~~~~~~g~~ 889 (1324)
+..+|.++...|++++|..+|+++.. .......+...|++++|+..+++.. .......++..+...+++
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence 99999999999999999999999864 1223345566788999988875543 222334467777788888
Q ss_pred HHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 890 RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 890 ~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
++|++.|.++....... ..........+|.++...|++++|+.+|.++
T Consensus 194 ~~a~~~~~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 194 QTLMERLKADATDNTSL------------------AEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHCCSHHHH------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccc------------------cccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88988888854322110 0012345778999999999999999999887
No 209
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.32 E-value=3.2e-10 Score=129.05 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=99.4
Q ss_pred CEEEEEEcCCCeEEEEEcCCCeEEEEec-CCCC-CceEEEEecCCCEEEE------EEEEEeCC-CCeEEEEecCC----
Q psy12365 67 DLLGIISSNSSAVNVWNTYTKKRTIVDS-GLRD-PLTCLVWCKQCSMLQL------SVSIYNKH-GKLIDKITLPG---- 133 (1324)
Q Consensus 67 ~~l~~~~~~d~~i~iw~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~l~~------~i~v~d~~-g~~~~~~~~~~---- 133 (1324)
+++++++. ++.|.+||..+++....+. ++.. .+..++|+|+|+.+++ .|.+||.. ++....+....
T Consensus 2 ~~~v~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPAR-PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEET-TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCC-CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 35677776 9999999999888766554 2221 4789999999987655 89999975 66666666543
Q ss_pred --cEEEEEEcCCCCEEEEEEc------------CCCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEE
Q psy12365 134 --LCIVMDWDSEGDLLGIISS------------NSSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVK 190 (1324)
Q Consensus 134 --~i~~~~~~~~g~~l~~~~~------------~~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~ 190 (1324)
.+..++|+|+|+.+++ +. .++.|.+||..+. ..+..+.|+|||++|+++ ++.+.
T Consensus 81 ~~~~~~~~~s~dg~~l~~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAI-YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEE-EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCCEEEE-EecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEE
Confidence 6778999999999888 54 5799999998732 456789999999988887 68899
Q ss_pred EEEcCCC
Q psy12365 191 IYLSKLP 197 (1324)
Q Consensus 191 ~~~~~~~ 197 (1324)
+|+....
T Consensus 158 ~~d~~~~ 164 (337)
T 1pby_B 158 VMDPEAG 164 (337)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9997654
No 210
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.31 E-value=1.9e-11 Score=134.52 Aligned_cols=234 Identities=11% Similarity=0.004 Sum_probs=166.0
Q ss_pred HhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHH
Q psy12365 658 LQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALA 737 (1324)
Q Consensus 658 l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~ 737 (1324)
...+++++|+..|.++...... .-.. ....+..+|.++...|++++|+..|.++. .
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------~ 71 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL----TDDE-RAQLLYERGVLYDSLGLRALARNDFSQAL-------------------A 71 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC----CHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H
T ss_pred CccchHHHHHHHHHHHHhcccc----cCch-hHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------H
Confidence 3456677777777765432100 0011 34566888999999999999999875532 1
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc--
Q psy12365 738 LATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES-- 815 (1324)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-- 815 (1324)
. .+....++..+|.++...|++++|+.+|++++...|. +...+..+|.+|.+.|++++|++.++++
T Consensus 72 ~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 72 I-----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp H-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-------ccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 3445678899999999999999999999999999886 4566777899999999999999998877
Q ss_pred --CChHHHHHHHHHHHHccCHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhccC--C-------HHHHH
Q psy12365 816 --NSSVLKNECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHIK--S-------ATTFI 877 (1324)
Q Consensus 816 --~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~--~-------~~~~~ 877 (1324)
++......+...+...|++++|...|+++.. ....+..+...++.++|+..+++.. . ..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 140 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219 (275)
T ss_dssp HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHH
Confidence 2222222333344667999999999987653 3346677788888888988887765 1 46778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 878 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 952 (1324)
Q Consensus 878 ~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~ 952 (1324)
.+|.++...|++++|+..|.++... +|+ .....+..+...|++++|++.|
T Consensus 220 ~la~~~~~~g~~~~A~~~~~~al~~------------~p~-------------~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVAN------------NVH-------------NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT------------CCT-------------TCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC------------Cch-------------hHHHHHHHHHHHHHHHhhHHHH
Confidence 8999999999999999999995531 111 0112345677788888888776
No 211
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.31 E-value=1.4e-11 Score=152.02 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=129.1
Q ss_pred CCCCeeEEEEecCCCCEEEEEeC-CCcEEEEECCCcEEEEEe-CC-CCEEEEEEcCCCCEEEEEEc--CCCeEEEE--Ec
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGR-DSSVSIYNKHGKLIDKIT-LP-GLCIVMDWDSEGDLLGIISS--NSSAVNVW--NT 84 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~-~~~v~v~~~~~~~~~~~~-~~-~~i~~i~~~~d~~~l~~~~~--~d~~i~iw--~~ 84 (1324)
+..+|.+++|+| ||+.||+++. +|++.||+.++.....+. +. ..+.+++|||| +.++++.. ++....+| +.
T Consensus 20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 345799999999 9999999887 999999999776666666 44 57999999999 55555542 23445554 44
Q ss_pred --CCCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCC-
Q psy12365 85 --YTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNS- 154 (1324)
Q Consensus 85 --~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~- 154 (1324)
.++.. .+... ..+...+|+|+|+.++. .+.+||..+.....+. +.+ .+++|+|||++|++ ++.+
T Consensus 98 ~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~-~~~~~ 171 (582)
T 3o4h_A 98 SRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAG-LGFFG 171 (582)
T ss_dssp TSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEE-EEEEE
T ss_pred cCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEE-EEEcC
Confidence 33333 23323 23567799999865433 5669998755555444 333 78999999999998 6555
Q ss_pred ---CcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q psy12365 155 ---SAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGG--SVKIYLSKL 196 (1324)
Q Consensus 155 ---~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg--~i~~~~~~~ 196 (1324)
+.|.+||+.+. ..+..+.|||||++|+++..+| .|++|+...
T Consensus 172 ~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred CCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 67899997622 5578999999999999888888 788887654
No 212
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=4.9e-11 Score=129.27 Aligned_cols=193 Identities=13% Similarity=0.056 Sum_probs=151.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~ 821 (1324)
.+.++..+|..+...|++++|++.|++++...|. ....+..++.++...|++++|+++++++ ++ ..++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 3567789999999999999999999999999886 4566777899999999999999998876 22 7788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
..+|.++...|++++|..+|+++.. . ...+ ...++..+|.++...|++++|++.|.++.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~----------~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ----------D----------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT----------C----------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh----------C----------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999988764 0 0111 34567778999999999999999998843
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccC
Q psy12365 901 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE 980 (1324)
Q Consensus 901 ~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l 980 (1324)
+ .. .....+...+|.++...|++++|+.+|.++ +
T Consensus 169 ~------~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------------~ 202 (252)
T 2ho1_A 169 R------LN----------------RNQPSVALEMADLLYKEREYVPARQYYDLF------------------------A 202 (252)
T ss_dssp H------HC----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------H
T ss_pred h------cC----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------H
Confidence 1 11 123455678999999999999999988876 2
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 981 E-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 981 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
. .+.....+..++.++...|++.+|..+|.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 203 QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 4466778888887777777666666665543
No 213
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.2e-11 Score=135.57 Aligned_cols=234 Identities=13% Similarity=0.023 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|++++|+.+|.++........-..... ....+..+|.++...|++++|+..|.+
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~----------- 94 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKDAANLLND----------- 94 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHH-----------
Confidence 34678899999999999999999987644211000001111 345568899999999999999997754
Q ss_pred HHHhhHHHHHHHHHhc---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCC-CCChhhHHhhhchHHHHHHhc
Q psy12365 727 RDLRQWREALALATSL---GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPD-IQDPECQRKCKEGIARTSIRV 802 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~ 802 (1324)
|+.+++.. ..+....++..+|.++...|++++|+.+|++++...... ..........+..+|.++...
T Consensus 95 --------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 95 --------ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp --------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 33333332 223445778999999999999999999999998874100 001134567778899999999
Q ss_pred CCHHHHHHHHHhcC----------C---hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHH--------------------
Q psy12365 803 GDFRLGIRLAAESN----------S---SVLKNECADILQQFNKLNDAVTLYESAGNYEK-------------------- 849 (1324)
Q Consensus 803 g~~~~A~~~~~~~~----------~---~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~-------------------- 849 (1324)
|++++|+++++++. . ..++..+|.++..+|++++|..+|+++.....
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999887752 1 45788999999999999999999999875321
Q ss_pred ---HHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 850 ---AATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 850 ---~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
....+...+.+.+|...++... ...++..+|.++...|++++|+++|.++.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122333344444444444443 45677889999999999999999999843
No 214
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.30 E-value=2.3e-11 Score=154.93 Aligned_cols=183 Identities=11% Similarity=0.127 Sum_probs=131.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe--CCCCE------------------EEEEEcCCCCEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT--LPGLC------------------IVMDWDSEGDLLG 70 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~--~~~~i------------------~~i~~~~d~~~l~ 70 (1324)
+|...+..++||| ||+.|++++. +.|++||..+.....+. +...+ .+++|||||+.|+
T Consensus 111 ~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la 188 (723)
T 1xfd_A 111 VSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (723)
T ss_dssp CCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred cccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence 3445588999999 9999999886 78999998554333333 22222 7899999999999
Q ss_pred EEEcCCC----------------------------------eEEEEEcCCCeEEEEecCC------CCCceEEEEecCCC
Q psy12365 71 IISSNSS----------------------------------AVNVWNTYTKKRTIVDSGL------RDPLTCLVWCKQCS 110 (1324)
Q Consensus 71 ~~~~~d~----------------------------------~i~iw~~~~~~~~~~~~~~------~~~v~~~~~s~~~~ 110 (1324)
+++. ++ .|++||+.+++....+..+ ...+..++|||||+
T Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 189 YAAI-NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEE-ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEE-CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 9875 32 7999999888753444443 55688999999999
Q ss_pred EEEE---------EEEEEeCC-CCeEEEEe--cCCcEE----EEEEcCCCCEEEEE-EcCCC------cEEEee-cc--c
Q psy12365 111 MLQL---------SVSIYNKH-GKLIDKIT--LPGLCI----VMDWDSEGDLLGII-SSNSS------AVNVWT-LL--T 164 (1324)
Q Consensus 111 ~l~~---------~i~v~d~~-g~~~~~~~--~~~~i~----~~~~~~~g~~l~~~-~~~~~------~i~iwd-~~--~ 164 (1324)
++++ .|.+||.. |+....+. +.+.+. .++|+|||+.|++. +..++ .|.+|| .. .
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 8865 68999986 44443332 334433 78999999988873 44566 577777 22 2
Q ss_pred ---C-------CCeeE-EEEcCCCCEEEEEeCC---CcEEEEEcCC
Q psy12365 165 ---Y-------TLGER-ISWSDDGQLLAVTTSG---GSVKIYLSKL 196 (1324)
Q Consensus 165 ---~-------~~i~~-~~~s~~~~~l~~~~~d---g~i~~~~~~~ 196 (1324)
. ..+.. +.|+|||+.|++.+.+ +.+++|++..
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 1 22333 6899999999877665 7889998754
No 215
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.29 E-value=2.1e-10 Score=131.99 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=130.2
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCC----CcEEEEECC---CcE--EEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRD----SSVSIYNKH---GKL--IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~----~~v~v~~~~---~~~--~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
+...+..++|+| +|++|++++.+ +.|.+|+++ |.. +.... +...+..+++ ||++++++...++.|.+
T Consensus 48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 556678899999 99999998875 799999873 432 22333 3456777888 89988888866899999
Q ss_pred EEcCCCe-EE---E--EecC--------CCCCceEEEEecCCCEEEE------EEEEEeCC--C-----C-e-------E
Q psy12365 82 WNTYTKK-RT---I--VDSG--------LRDPLTCLVWCKQCSMLQL------SVSIYNKH--G-----K-L-------I 126 (1324)
Q Consensus 82 w~~~~~~-~~---~--~~~~--------~~~~v~~~~~s~~~~~l~~------~i~v~d~~--g-----~-~-------~ 126 (1324)
|++.... .. . ...+ +...+.+++|+|+|+++++ .+.+|+++ + + . .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9986432 11 1 1111 1223578999999997766 89999865 2 2 2 1
Q ss_pred EEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCCEEEEEeCC--CcE
Q psy12365 127 DKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQLLAVTTSG--GSV 189 (1324)
Q Consensus 127 ~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~~l~~~~~d--g~i 189 (1324)
........+..++|+|||+++++.+..++.|.+|++.+. ..+..+.|+|||++|+++..+ +.+
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 122244567899999999988873557899999998621 235589999999999877665 889
Q ss_pred EEEEcC
Q psy12365 190 KIYLSK 195 (1324)
Q Consensus 190 ~~~~~~ 195 (1324)
.+|++.
T Consensus 285 ~v~~~~ 290 (361)
T 3scy_A 285 AIFKVD 290 (361)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999975
No 216
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=7.4e-11 Score=135.70 Aligned_cols=181 Identities=9% Similarity=0.045 Sum_probs=131.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEC--CCcEEEEEeC--CCCEEEEEEcCCCCE--EEEEE-------c-----
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNK--HGKLIDKITL--PGLCIVMDWDSEGDL--LGIIS-------S----- 74 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~--~~~~~~~~~~--~~~i~~i~~~~d~~~--l~~~~-------~----- 74 (1324)
...+..++|+| +|++|++++.+ .|.+|++ +|++.....+ .+.+.+++|+|||+. ++++. .
T Consensus 39 ~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34688999999 99999888877 8999997 5665443332 244667899999995 33432 1
Q ss_pred CCCeEEEEEcC-CCeEEEEec----CCCCCceEEEEecCCCEEEE------EEEEEeCC--CCeE--EEEe---cCCcEE
Q psy12365 75 NSSAVNVWNTY-TKKRTIVDS----GLRDPLTCLVWCKQCSMLQL------SVSIYNKH--GKLI--DKIT---LPGLCI 136 (1324)
Q Consensus 75 ~d~~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~------~i~v~d~~--g~~~--~~~~---~~~~i~ 136 (1324)
.++.+.+|++. +++...... .+...+.+++|+|+|+++++ .|.+|+.+ |+.. ..+. +...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 38999999986 455433222 24567899999999998776 89999985 5543 2333 245688
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecc--cC-------------------C-------CeeEEE-EcCCCCEEEEEeCCC
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLL--TY-------------------T-------LGERIS-WSDDGQLLAVTTSGG 187 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~--~~-------------------~-------~i~~~~-~s~~~~~l~~~~~dg 187 (1324)
.++|+|||+++++.+..++.|.+|+.+ +. . .+..++ |+|||++|+++..++
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988734457899998654 10 0 367899 999999988776432
Q ss_pred ------cEEEEEcC
Q psy12365 188 ------SVKIYLSK 195 (1324)
Q Consensus 188 ------~i~~~~~~ 195 (1324)
.|.+|++.
T Consensus 277 ~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 277 KFELQGYIAGFKLR 290 (365)
T ss_dssp STTSCCEEEEEEEC
T ss_pred CCCCCCeEEEEEEC
Confidence 79999875
No 217
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=4.6e-11 Score=122.11 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHH
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALT 724 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~ 724 (1324)
+++..|..+|..+...|++++|+.+|.++.. .-.. ..+.+..+|.++...|++++|+..+.++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~------- 66 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--------ADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFV------- 66 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 4577899999999999999999999987632 2222 45677889999999999999988765532
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC
Q psy12365 725 LRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD 804 (1324)
Q Consensus 725 ~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 804 (1324)
...+..+.++..+|..+...+++++|+..+++++...|. +...+..+|.+|.+.|+
T Consensus 67 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 67 -----------------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-------YADAYYKLGLVYDSMGE 122 (184)
T ss_dssp -----------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTC
T ss_pred -----------------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHhCC
Confidence 123455677888999999999999999999999999887 45566678999999999
Q ss_pred HHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 805 FRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 805 ~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+++|++.+++. |. ..++..+|.+|..+|++++|+..|+++.+
T Consensus 123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998876 22 78899999999999999999999999864
No 218
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.28 E-value=4.1e-11 Score=147.92 Aligned_cols=174 Identities=7% Similarity=-0.020 Sum_probs=129.2
Q ss_pred CCeeEEEEecCCCCEEEEEeC---CCcEEE--EEC--CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 14 PGDVYVCWQRRTGELLATTGR---DSSVSI--YNK--HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~---~~~v~v--~~~--~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+..++||| | +++++++. +....+ ++. .|... .+.........+|+|||+.++..+..++.+.+||+.+
T Consensus 65 ~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 65 NSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp SEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 5799999999 8 67766664 344455 445 55544 4443445567799999976554443356666999998
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCeEEEEe-cCCcEEEEEEcCCCCEEEEEEcCCC-
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS- 155 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~- 155 (1324)
++...+...+ . .++.|||||+.|++ .|++||..+.....+. +.+.+..++|||||+.|++ +..++
T Consensus 142 g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~ 217 (582)
T 3o4h_A 142 GGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG-LETARE 217 (582)
T ss_dssp TEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE-EECSSC
T ss_pred CcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE-ccCCCe
Confidence 8876665433 3 89999999999986 5889997744444444 6778999999999999997 88888
Q ss_pred -cEEEeecccC---------CCeeEEE--------EcCCCCEEEEEeCCCcEEEEEc
Q psy12365 156 -AVNVWTLLTY---------TLGERIS--------WSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 156 -~i~iwd~~~~---------~~i~~~~--------~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
.|.+||..+. ..+..+. |+|||.++++++.+|.+++|++
T Consensus 218 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 218 ARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred eEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8899998732 2234455 9999988899999999999998
No 219
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.26 E-value=1.6e-11 Score=132.32 Aligned_cols=180 Identities=12% Similarity=0.114 Sum_probs=127.4
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|..+...|++++|...|.++. ...+....++..+|..+...|++++|+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAI------------------------EENKEDAIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp -------------------CCTTHHHHH------------------------TTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHH------------------------HhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456778888888888888888775532 1233446777888888888888888888
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHh
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESA 844 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~ 844 (1324)
.|++++...|. ....+..++.++...|++++|+++++++ +. ..++..+|.++...|++++|..+|+++
T Consensus 79 ~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 79 FYDKALELDSS-------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCc-------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 88888888776 4556667888888888888888888775 22 677888888888888888888888887
Q ss_pred cC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 845 GN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 845 ~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
.. +..++.+|...|++++|+..+++.. .+.++..+|.++...|++++|++.|.++.
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 54 4556778888888888888887654 57788899999999999999999999843
No 220
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=1.2e-09 Score=126.21 Aligned_cols=268 Identities=10% Similarity=-0.053 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHH
Q psy12365 649 TWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRD 728 (1324)
Q Consensus 649 ~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~ 728 (1324)
.+..+|..++..|+++.|...+.++....... .... .......+|.++...|++++|+..|.+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~------------- 78 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYS-RIVATSVLGEVLHCKGELTRSLALMQQ------------- 78 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhH-HHHHHHHHHHHHHhcCcHHHHHHHHHH-------------
Confidence 45667888899999999999887653211000 0000 112346778889999999999997654
Q ss_pred HhhHHHHHHHHHhcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCC-hhhHHhhhchHHHHHHhcCCHH
Q psy12365 729 LRQWREALALATSLGSN-QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQD-PECQRKCKEGIARTSIRVGDFR 806 (1324)
Q Consensus 729 ~~~~~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~ 806 (1324)
|+.+....... .....+..+|.++...|++++|+.+|++++...+..... .......+..++.++...|+++
T Consensus 79 ------al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 79 ------TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 33333332111 122446788999999999999999999998765320000 0124456677999999999999
Q ss_pred HHHHHHHhcCC----------hHHHHHHHHHHHHccCHHHHHHHHHHhcCH----------H-----HHHHHHHHcCCHH
Q psy12365 807 LGIRLAAESNS----------SVLKNECADILQQFNKLNDAVTLYESAGNY----------E-----KAATCYIQLKNWT 861 (1324)
Q Consensus 807 ~A~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~----------~-----~~~~~~~~~~~~~ 861 (1324)
+|+.++++..+ ...+..+|.++...|++++|..+|+++... . ..+.++...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 99999887622 346788999999999999999999987532 1 1224477899999
Q ss_pred HHHhhhhccCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHH
Q psy12365 862 KIGQLLPHIKS---------ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 932 (1324)
Q Consensus 862 ~A~~~~~~~~~---------~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 932 (1324)
+|..++++... ...+..+|.++...|++++|+..+.++. ..... .+.+.... +..
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~------~~~~~-~~~~~~~~---------~~~ 296 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN------ENARS-LRLMSDLN---------RNL 296 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHH-TTCHHHHH---------HHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHh-CcchhhHH---------HHH
Confidence 99999887651 2245678999999999999999998843 33332 22222111 235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 933 KRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 933 ~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
..+|..+...|++++|...|.++
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 67899999999999999988765
No 221
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.26 E-value=7.1e-11 Score=127.97 Aligned_cols=179 Identities=11% Similarity=0.038 Sum_probs=138.7
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.+..+|.++...|++++|+..|.++. .. .+....++..+|.++...|++++|++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-------------------~~-----~~~~~~~~~~la~~~~~~~~~~~A~~ 92 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKAL-------------------EI-----DPSSADAHAALAVVFQTEMEPKLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHH-------------------HH-----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------hc-----CCChHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456778888999999999998776532 11 23346677888888888888888888
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-------hHHHHHHHHHHHHccCHHHHHHHHH
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-------SVLKNECADILQQFNKLNDAVTLYE 842 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~y~ 842 (1324)
+|++++...|. +...+..++.++...|++++|+++++++.. ..++..+|.++...|++++|..+|+
T Consensus 93 ~~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 93 EYRKALASDSR-------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcC-------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888776 345566678888888888888888877622 5677788888888888888888888
Q ss_pred HhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 843 SAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 843 ~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
++.. +..++.+|...|++++|..++++.. ....+..++.++...|++++|.++|.++
T Consensus 166 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8653 5566778888888888888776653 6677888899999999999999999884
No 222
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=156.44 Aligned_cols=173 Identities=13% Similarity=0.200 Sum_probs=123.6
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCC-cEEEEEeCCC----CEEEEEEcCCCCEEEEEEcC--------CCeEEEEE
Q psy12365 17 VYVCWQRRTGELLATTGRDSSVSIYNKHG-KLIDKITLPG----LCIVMDWDSEGDLLGIISSN--------SSAVNVWN 83 (1324)
Q Consensus 17 ~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~~~~~~~~~~----~i~~i~~~~d~~~l~~~~~~--------d~~i~iw~ 83 (1324)
..++|+| +|++++ .+.|++|++||..+ +....+.+.. .+.+++|||||++|++++.. ++.|++||
T Consensus 19 ~~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 4789999 996554 55799999999854 4444443322 38899999999999988641 48999999
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEecCC---cE-----------------EEEE
Q psy12365 84 TYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITLPG---LC-----------------IVMD 139 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~~~---~i-----------------~~~~ 139 (1324)
+.+++.... ......+..++|||||+.|++ +|++||..+.....+...+ .+ .+++
T Consensus 97 ~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 97 LSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTTEECCS-SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCCccccc-eecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 998876210 112356889999999999988 9999998744444443222 12 4899
Q ss_pred EcCCCCEEEEEEcCCC----------------------------------cEEEeecccC------------------CC
Q psy12365 140 WDSEGDLLGIISSNSS----------------------------------AVNVWTLLTY------------------TL 167 (1324)
Q Consensus 140 ~~~~g~~l~~~~~~~~----------------------------------~i~iwd~~~~------------------~~ 167 (1324)
|||||+.|++ ++.+. .|.+||..+. ..
T Consensus 176 wSPDG~~la~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNGKFLAY-AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTSSEEEE-EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCCCEEEE-EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999998 55331 6789998722 24
Q ss_pred eeEEEEcCCCCEEEEEeCC--C--cEEEEE
Q psy12365 168 GERISWSDDGQLLAVTTSG--G--SVKIYL 193 (1324)
Q Consensus 168 i~~~~~s~~~~~l~~~~~d--g--~i~~~~ 193 (1324)
+..+.|||||+++++.... + .|.+|+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 6889999998877764432 2 266666
No 223
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=6e-11 Score=133.25 Aligned_cols=176 Identities=14% Similarity=0.019 Sum_probs=131.0
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhc---CCCCchHHHHHHHHHHHHcCCHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSL---GSNQTPIISCDYAQQLEMTGQHAQA 767 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A 767 (1324)
+.+..+|.++...|++++|+.+|.+ |+++++.. ..+....++..+|.++...|++++|
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~-------------------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 88 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQ-------------------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4567889999999999999997755 33443332 2344457789999999999999999
Q ss_pred HHHHHHhcccCCCC-CCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-------------hHHHHHHHHHHHHccC
Q psy12365 768 LSFYQKSMELATPD-IQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-------------SVLKNECADILQQFNK 833 (1324)
Q Consensus 768 ~~~y~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~l~~~~~~~g~ 833 (1324)
+.+|++++...... ..+.......+..++.++...|++++|+++++++.. ..++..+|.++...|+
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 99999998873100 000134567788899999999999999998877522 4567889999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 834 LNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 834 ~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+++|+.+|+++.... .+. ..... ...++..+|.++...|++++|++.|.++.
T Consensus 169 ~~~A~~~~~~a~~~~------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 169 YEEVEYYYQRALEIY------QTK---------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHH------HHT---------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHH---------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988876421 110 00001 24567788999999999999999999954
No 224
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.24 E-value=1.2e-09 Score=125.63 Aligned_cols=181 Identities=13% Similarity=0.173 Sum_probs=126.5
Q ss_pred CCCeeEEEEecCCCCEEEEEe-CCCcEEEEECC--CcE---EEEEeCC-----------CCEEEEEEcCCCCEEEEEEcC
Q psy12365 13 GPGDVYVCWQRRTGELLATTG-RDSSVSIYNKH--GKL---IDKITLP-----------GLCIVMDWDSEGDLLGIISSN 75 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~--~~~---~~~~~~~-----------~~i~~i~~~~d~~~l~~~~~~ 75 (1324)
...+..+++ +|+++++++ .++.|.+|+.. +.. ...+.+. ..+.+++|+|||++++++..+
T Consensus 99 ~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 99 GADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 344555555 677777766 57899999973 221 1122221 235789999999988888766
Q ss_pred CCeEEEEEcCCCe-------E------EEEecCCCCCceEEEEecCCCEEEE------EEEEEeCCCCeEE---EEe---
Q psy12365 76 SSAVNVWNTYTKK-------R------TIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKHGKLID---KIT--- 130 (1324)
Q Consensus 76 d~~i~iw~~~~~~-------~------~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g~~~~---~~~--- 130 (1324)
++.|.+|++.... + ......+...+..++|+|+|+++++ .|.+|+....... .+.
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~ 255 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT 255 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence 8999999876432 1 1222345556889999999998766 8999997633222 222
Q ss_pred -cCCcEEEEEEcCCCCEEEEEEcC-CCcEEEeecc--cC-----------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEc
Q psy12365 131 -LPGLCIVMDWDSEGDLLGIISSN-SSAVNVWTLL--TY-----------TLGERISWSDDGQLLAVTT-SGGSVKIYLS 194 (1324)
Q Consensus 131 -~~~~i~~~~~~~~g~~l~~~~~~-~~~i~iwd~~--~~-----------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~ 194 (1324)
+......++|+|||++|++.... ++.|.+|+++ +. ..+..++|+|||++|++++ .++.+.+|.+
T Consensus 256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 12346799999999998772444 5899999985 11 2578899999999998887 5788999876
Q ss_pred CC
Q psy12365 195 KL 196 (1324)
Q Consensus 195 ~~ 196 (1324)
+.
T Consensus 336 d~ 337 (361)
T 3scy_A 336 DQ 337 (361)
T ss_dssp CT
T ss_pred EC
Confidence 53
No 225
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=7e-09 Score=126.04 Aligned_cols=299 Identities=10% Similarity=0.017 Sum_probs=163.3
Q ss_pred HHHhhcHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhH-H-------HHHHHhhhcc-----
Q psy12365 628 VLKLLNWKEAWNICAVL-----NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGM-V-------WCLESLVEEE----- 689 (1324)
Q Consensus 628 ~l~~~~~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~-~-------~~l~~~~~~~----- 689 (1324)
+...|++++|..+++.. .+...|..++....+.|+++.|...|.++-.... . .++.+...+.
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHH
Confidence 46789999999988866 4688999999999999999999999998743211 0 0110000000
Q ss_pred -------------------cchhhHHHHHHHH---------cCCHHHHHHHHHhCCC-hH----HHHHHHH---------
Q psy12365 690 -------------------EDTSILCGHVAAL---------LGNHDTAQQRYLTSDI-PT----MALTLRR--------- 727 (1324)
Q Consensus 690 -------------------~~~~~~~a~~~~~---------~g~~~~A~~~~~~~~~-~~----~a~~~~~--------- 727 (1324)
...|...+..... +|++++|..+|.++.. |. .....|.
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchh
Confidence 0112222222222 5677777777776432 11 1111111
Q ss_pred --------HHhhHHHHHHHHHh------c-------CCCCc-------hHHHHHHHHHHHHc----CCH----HHHHHHH
Q psy12365 728 --------DLRQWREALALATS------L-------GSNQT-------PIISCDYAQQLEMT----GQH----AQALSFY 771 (1324)
Q Consensus 728 --------~~~~~~~Al~~~~~------~-------~~~~~-------~~~~~~~~~~~~~~----g~~----~~A~~~y 771 (1324)
..+++.+|....+. . .++.. ..++..+....... ++. ..|+..|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 12345555543332 1 12111 13444443332221 222 4677788
Q ss_pred HHhcccCCCCCCChhhHHhhhchHHHHHHh-------cCCHH-------HHHHHHHhcCC------hHHHHHHHHHHHHc
Q psy12365 772 QKSMELATPDIQDPECQRKCKEGIARTSIR-------VGDFR-------LGIRLAAESNS------SVLKNECADILQQF 831 (1324)
Q Consensus 772 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~------~~~~~~l~~~~~~~ 831 (1324)
++++...|. ....+..++..+.+ .|+++ +|+++++++.. ..+|..+|.++...
T Consensus 262 ~~al~~~p~-------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 262 EQCLLVLGH-------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCC-------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 888877776 34445556666654 67776 77777766531 66777888888888
Q ss_pred cCHHHHHHHHHHhcC---------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy12365 832 NKLNDAVTLYESAGN---------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKA-KEAMGSYRESVGAY 896 (1324)
Q Consensus 832 g~~~~A~~~y~~~~~---------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~-~~~~g~~~~A~~~y 896 (1324)
|++++|..+|+++.. +...+..+.+.|++++|.+++++.. ...++...|.. +...|++++|...|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 888888888877642 2222333344455555555544432 11222222222 12345555555555
Q ss_pred HHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 897 ERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 897 ~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+++. .. .+.+.+....++.++.+.|++++|..+|.++
T Consensus 415 e~al------~~----------------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 415 ELGL------KK----------------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHH------HH----------------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHH------HH----------------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 4421 11 1234455566777777777777777777665
No 226
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.23 E-value=2.4e-10 Score=131.36 Aligned_cols=180 Identities=13% Similarity=0.039 Sum_probs=130.6
Q ss_pred eeEEEEecCCCCE--EEEEe-------------CCCcEEEEEC--CCcEEEEEe-----CCCCEEEEEEcCCCCEEEEEE
Q psy12365 16 DVYVCWQRRTGEL--LATTG-------------RDSSVSIYNK--HGKLIDKIT-----LPGLCIVMDWDSEGDLLGIIS 73 (1324)
Q Consensus 16 i~~~~~sp~~g~~--l~~~~-------------~~~~v~v~~~--~~~~~~~~~-----~~~~i~~i~~~~d~~~l~~~~ 73 (1324)
+.+++|+| +|++ +++++ .+|.+.+|+. +|+....+. +...+.+++|+|||++++++.
T Consensus 85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 56789999 9995 44442 6889999997 466554443 346799999999999988877
Q ss_pred cCCCeEEEEEcC-CCeEEE--Eec--CCCCCceEEEEecCCCEEEE------EEEEEeCC---CCeEE---EEe-cC---
Q psy12365 74 SNSSAVNVWNTY-TKKRTI--VDS--GLRDPLTCLVWCKQCSMLQL------SVSIYNKH---GKLID---KIT-LP--- 132 (1324)
Q Consensus 74 ~~d~~i~iw~~~-~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~------~i~v~d~~---g~~~~---~~~-~~--- 132 (1324)
.+++.|++|++. +++... ... .+...+..++|+|+|+++++ .+.+|+.+ |+... .+. .+
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 657899999998 675532 222 23566899999999998876 78888754 55432 222 11
Q ss_pred -C---------cEEEEE-EcCCCCEEEEEEcC-CC-----cEEEeecc-cC-------------CCeeEEEEcC---CCC
Q psy12365 133 -G---------LCIVMD-WDSEGDLLGIISSN-SS-----AVNVWTLL-TY-------------TLGERISWSD---DGQ 178 (1324)
Q Consensus 133 -~---------~i~~~~-~~~~g~~l~~~~~~-~~-----~i~iwd~~-~~-------------~~i~~~~~s~---~~~ 178 (1324)
+ .+..++ |+|||++|++ +.. ++ .|.+|+++ +. ..+..++|+| ||+
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v-~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFA-SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred CCcccccccccccccEEEECCCCCEEEE-ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 1 478899 9999998877 443 33 89999875 21 1245577899 899
Q ss_pred EEEEEeCC-CcEEEEEcCCC
Q psy12365 179 LLAVTTSG-GSVKIYLSKLP 197 (1324)
Q Consensus 179 ~l~~~~~d-g~i~~~~~~~~ 197 (1324)
+|++++.+ +.|.+|+.+..
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSSCEEEEEEEETT
T ss_pred EEEEEEcCCCeEEEEEEchh
Confidence 99998864 89999987654
No 227
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.23 E-value=1.6e-09 Score=119.81 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=138.4
Q ss_pred CCCCeeEEEEe-cCCCCEEEEEeC-CCcEEEEECCCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 12 HGPGDVYVCWQ-RRTGELLATTGR-DSSVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 12 h~~~i~~~~~s-p~~g~~l~~~~~-~~~v~v~~~~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
|...+..++++ + +|.++++... ++.|.+||.+|+.+..+. ....+.+++++|+|+.+++... ++.|.+||..+.
T Consensus 75 ~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-VMRVIIFDQNGN 152 (286)
T ss_dssp CBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-TTEEEEECTTSC
T ss_pred cccCceEEEEEcC-CCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECC-CCEEEEEcCCCC
Confidence 44578899995 6 7776665543 789999999998887776 2357899999999986655544 789999997654
Q ss_pred eEEEEec-CCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEecC---CcEEEEEEcCCCCEEEEEEcCCC-cE
Q psy12365 88 KRTIVDS-GLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKITLP---GLCIVMDWDSEGDLLGIISSNSS-AV 157 (1324)
Q Consensus 88 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~~~---~~i~~~~~~~~g~~l~~~~~~~~-~i 157 (1324)
....... ++...+..++++|+|.++++ .|.+||.+|+....+... ..+..++++|+|+++++ ...++ .|
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~-~~~~~~~i 231 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIA-DNHNNFNL 231 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEE-ECSSSCEE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEE-eCCCCEEE
Confidence 4333221 34456899999999987766 899999998887777644 46889999999998887 76665 99
Q ss_pred EEeecccC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 158 NVWTLLTY-----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 158 ~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.+|+.... ..+..++++|+|+++++ +.++.|.+|+...
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 232 TIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 99997621 23678999999976665 6789999998643
No 228
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.23 E-value=3.9e-10 Score=119.45 Aligned_cols=183 Identities=11% Similarity=0.008 Sum_probs=128.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
+..+.++..+|..+...|++++|++.|++++...|. ....+..++.++...|++++|+++++++ ++ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 334556677777777777777777777777777665 3445556777777777777777777665 22 56
Q ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHhcC----------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHH
Q psy12365 820 LKNECADILQQF-NKLNDAVTLYESAGN----------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAK 883 (1324)
Q Consensus 820 ~~~~l~~~~~~~-g~~~~A~~~y~~~~~----------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~ 883 (1324)
++..+|.++... |++++|..+|+++.. +..++.+|...|++++|+..+++.. +..++..+|.++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 677777777777 777777777777654 3445567777777777777766543 577888899999
Q ss_pred HHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 884 EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 884 ~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
...|++++|+..|.++. .+.. ..+......++.++...|++++|..++...
T Consensus 158 ~~~~~~~~A~~~~~~~~------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQ------SRVE---------------VLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHTCHHHHHHHHHHHH------HHHC---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH------HhCC---------------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999998833 1111 023334556778889999999998877665
No 229
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=3.1e-11 Score=148.83 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=130.4
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
|+.++++.++|.++..+|++++|+++|+++++.+|+ +..++.++|.+|.++|++++|++.++++ ++ ..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 445678899999999999999999999999999997 5677788999999999999999988887 22 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHc
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAM 886 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~ 886 (1324)
+++.+|.+|..+|++++|+..|+++.+ +..++.+|.+.|++++|++.+++.. .+.++..+|.++...
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 899999999999999999999999865 6678889999999999999888765 778999999999999
Q ss_pred CCHHHHHHHHHHhh
Q psy12365 887 GSYRESVGAYERAE 900 (1324)
Q Consensus 887 g~~~~A~~~y~~a~ 900 (1324)
|++++|++.|.++.
T Consensus 159 g~~~~A~~~~~kal 172 (723)
T 4gyw_A 159 CDWTDYDERMKKLV 172 (723)
T ss_dssp TCCTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999844
No 230
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=2.5e-09 Score=129.98 Aligned_cols=284 Identities=12% Similarity=0.027 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHH
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALT 724 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~ 724 (1324)
.+...|..++.. .+.|+++.|...|.++.. .... ..+.|...+......|++++|..+|.++..
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~--------~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~------ 74 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVA--------QFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLM------ 74 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHT--------TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHH--------HCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------
Confidence 468899999984 889999999999987633 2223 456678889999999999999998877541
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCchHHHHHHHH-HHHHcCCHHHHHH----HHHHhcccCCCCCCChhhHHhhhchHHHHH
Q psy12365 725 LRRDLRQWREALALATSLGSNQTPIISCDYAQ-QLEMTGQHAQALS----FYQKSMELATPDIQDPECQRKCKEGIARTS 799 (1324)
Q Consensus 725 ~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~~----~y~~al~~~~~~~~~~~~~~~~~~~la~~~ 799 (1324)
.. ++ ..++..++. .....|++++|.+ .|++++...+. + ......+...+...
T Consensus 75 -----------------~~-p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~---~-~~~~~~w~~~~~~~ 131 (530)
T 2ooe_A 75 -----------------KV-LH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM---E-IMSYQIWVDYINFL 131 (530)
T ss_dssp -----------------TC-CC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT---S-TTCHHHHHHHHHHH
T ss_pred -----------------cC-CC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC---C-cccHHHHHHHHHHH
Confidence 12 23 346667765 3355677777665 88888764321 0 01223333344444
Q ss_pred Hh---------cCCHHHHHHHHHhcCC------hHHHHHHHHHH-------------HHccCHHHHHHHHHH------hc
Q psy12365 800 IR---------VGDFRLGIRLAAESNS------SVLKNECADIL-------------QQFNKLNDAVTLYES------AG 845 (1324)
Q Consensus 800 ~~---------~g~~~~A~~~~~~~~~------~~~~~~l~~~~-------------~~~g~~~~A~~~y~~------~~ 845 (1324)
.+ .|++++|..++++... ..+|...+... ...+++.+|...|.+ ..
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 132 KGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 43 7889999999988743 23444333322 234677888777765 11
Q ss_pred C-------------HHHHH---HHHHH--------cCCH----HHHHhhhhccC-----CHHHHHHHHHHHHH-------
Q psy12365 846 N-------------YEKAA---TCYIQ--------LKNW----TKIGQLLPHIK-----SATTFIQYAKAKEA------- 885 (1324)
Q Consensus 846 ~-------------~~~~~---~~~~~--------~~~~----~~A~~~~~~~~-----~~~~~~~~a~~~~~------- 885 (1324)
+ ..... ..|+. .++. ++|+.++++.. ++.++..+|.++..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 1 01111 11211 0111 24444444333 77888888988876
Q ss_pred cCCHH-------HHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q psy12365 886 MGSYR-------ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY 958 (1324)
Q Consensus 886 ~g~~~-------~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~ 958 (1324)
.|+++ +|+..|.+|-. ...| .+......+|.++.+.|++++|.+.|.++
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~-----------~~~p----------~~~~l~~~~~~~~~~~g~~~~A~~~~~~a--- 347 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIS-----------TLLK----------KNMLLYFAYADYEESRMKYEKVHSIYNRL--- 347 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTT-----------TTCS----------SCHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred ccchhhhhhhhHHHHHHHHHHHH-----------HhCc----------ccHHHHHHHHHHHHhcCCHHHHHHHHHHH---
Confidence 68876 77777777442 0011 23445677888888999999999888876
Q ss_pred HHHHHHHHhccchhHhhhhccCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 959 QDAFNLSQQHKKLHEFGKFLLEE-DEPNP-VELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 959 ~~A~~l~~~~~~~~~~~~~l~l~-~~~~~-~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
+. +|.++ ..|..++..+...|++++|...|.++
T Consensus 348 ---------------------l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 348 ---------------------LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp ---------------------HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 22 33343 57888888888788888887777765
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3e-10 Score=108.65 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhhcHHHHHHHHHhhCCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHH
Q psy12365 620 TLDISLHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHV 699 (1324)
Q Consensus 620 ~~~~~~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~ 699 (1324)
+....|..+++.|+++.|+++++.++++..|+.||+.++..|+++.|++||++++|+....++..+.. ..+.+..++.+
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg-~~e~L~kla~i 85 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG-DVNKLSKMQNI 85 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 33578999999999999999999999999999999999999999999999999999999999999988 78888999999
Q ss_pred HHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCC
Q psy12365 700 AALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGS 744 (1324)
Q Consensus 700 ~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~ 744 (1324)
+...|++..|...+...++.+.++++|.+.|+|.+|...++.+.+
T Consensus 86 A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~ 130 (177)
T 3mkq_B 86 AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGD 130 (177)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999998644
No 232
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.22 E-value=2.9e-10 Score=132.34 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=128.5
Q ss_pred EEEecCCCCEEEEEeC-CC--cEEEEECCCcEEEEEe-CC-CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEe
Q psy12365 19 VCWQRRTGELLATTGR-DS--SVSIYNKHGKLIDKIT-LP-GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVD 93 (1324)
Q Consensus 19 ~~~sp~~g~~l~~~~~-~~--~v~v~~~~~~~~~~~~-~~-~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~ 93 (1324)
.+||| ||++|++++. ++ .|.+||..+.....+. .. ..+..+.|+|||+.|+++.. ++.|++||+.+++...+.
T Consensus 41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENVVY 118 (388)
T ss_dssp CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEE
T ss_pred ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcceeee
Confidence 78999 9999999987 66 3888888665555544 32 33446789999999999987 889999999998877666
Q ss_pred cCCCCCceEEEE--ecCCCEEE---------------------------EEEEEEeCC-CCeEEEEecCCcEEEEEEcC-
Q psy12365 94 SGLRDPLTCLVW--CKQCSMLQ---------------------------LSVSIYNKH-GKLIDKITLPGLCIVMDWDS- 142 (1324)
Q Consensus 94 ~~~~~~v~~~~~--s~~~~~l~---------------------------~~i~v~d~~-g~~~~~~~~~~~i~~~~~~~- 142 (1324)
..+...+....| +|++..++ ..|.+||.. |+......+...+..+.|+|
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY 198 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence 656555544444 89999886 168889977 44444444667789999999
Q ss_pred CCCEEEEEEcC-----CCcEEEeecccC--------C---CeeEEEEcCCCCEEEEEeC-CC----cEEEEEcCCC
Q psy12365 143 EGDLLGIISSN-----SSAVNVWTLLTY--------T---LGERISWSDDGQLLAVTTS-GG----SVKIYLSKLP 197 (1324)
Q Consensus 143 ~g~~l~~~~~~-----~~~i~iwd~~~~--------~---~i~~~~~s~~~~~l~~~~~-dg----~i~~~~~~~~ 197 (1324)
||+.|+++... ...|.++|.... . .+..+.|||||+.|+..+. ++ .|++|++...
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 99999883332 336777776521 1 3667899999998766543 22 2888887543
No 233
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=6.5e-11 Score=140.78 Aligned_cols=205 Identities=7% Similarity=-0.024 Sum_probs=162.2
Q ss_pred HHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCH-HHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHH
Q psy12365 634 WKEAWNICAVL-----NQSETWRSFAEACLQNLEF-SWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHD 707 (1324)
Q Consensus 634 ~~~A~~~~~~~-----~~~~~~~~l~~~~l~~~~~-~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~ 707 (1324)
+++|++.++.. .+...|..+|..+...|++ ++|+.+|.++.. .-.. ..+.+..+|.++...|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--------~~p~-~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--------LEPE-LVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--------hCCC-CHHHHHHHHHHHHHcCCHH
Confidence 55555555533 4588999999999999999 999999886532 2222 4567888999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHhcccC
Q psy12365 708 TAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMT---------GQHAQALSFYQKSMELA 778 (1324)
Q Consensus 708 ~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~A~~~y~~al~~~ 778 (1324)
+|+..|.++. + .. ++ ..++..+|.++... |++++|++.|++++..+
T Consensus 155 ~A~~~~~~al-------------------~----~~-p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 155 SAHTCFSGAL-------------------T----HC-KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHH-------------------T----TC-CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-------------------h----hC-CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 9999776532 1 22 33 58889999999999 99999999999999999
Q ss_pred CCCCCChhhHHhhhchHHHHHHhc--------CCHHHHHHHHHhc----C---C-hHHHHHHHHHHHHccCHHHHHHHHH
Q psy12365 779 TPDIQDPECQRKCKEGIARTSIRV--------GDFRLGIRLAAES----N---S-SVLKNECADILQQFNKLNDAVTLYE 842 (1324)
Q Consensus 779 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~----~---~-~~~~~~l~~~~~~~g~~~~A~~~y~ 842 (1324)
|+ +...+..+|.+|... |++++|++.++++ + . ..++..+|.+|..+|++++|+..|+
T Consensus 210 p~-------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 210 VL-------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp TT-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 97 456677799999988 9999999988876 3 2 6789999999999999999999988
Q ss_pred HhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 843 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
++.... -..+.++..++.++...|++++|++.|.+..
T Consensus 283 ~al~l~---------------------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 283 QAAALD---------------------PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHC---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 875310 1145677778888889999999998887753
No 234
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.21 E-value=6.1e-10 Score=127.42 Aligned_cols=141 Identities=8% Similarity=0.069 Sum_probs=108.3
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCC--CEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 18 YVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPG--LCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~--~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
.+++++ ++.++++++.++.|.+||. +++.+..+.... .+..++|+|||+.++++...++.|.+||..+++......
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 456788 8999999999999999998 567777777554 688999999999887776558999999999887765544
Q ss_pred C-C-----CCCceEEEEecCCCEEEE-----------------EEEEEeCCC----CeEEEEecCCcEEEEEEcCCCCEE
Q psy12365 95 G-L-----RDPLTCLVWCKQCSMLQL-----------------SVSIYNKHG----KLIDKITLPGLCIVMDWDSEGDLL 147 (1324)
Q Consensus 95 ~-~-----~~~v~~~~~s~~~~~l~~-----------------~i~v~d~~g----~~~~~~~~~~~i~~~~~~~~g~~l 147 (1324)
. + ...+..++|+|+|+.+++ .|.+||... +......++..+.+++|+|||+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 2 2 223788999999998876 378899752 2334455666788999999999 5
Q ss_pred EEEEcCCCcEEEeecc
Q psy12365 148 GIISSNSSAVNVWTLL 163 (1324)
Q Consensus 148 ~~~~~~~~~i~iwd~~ 163 (1324)
++ ++. .|.+||..
T Consensus 162 ~~-~~~--~i~~~d~~ 174 (349)
T 1jmx_B 162 YV-AGP--DIYKMDVK 174 (349)
T ss_dssp EE-ESS--SEEEECTT
T ss_pred EE-ccC--cEEEEeCC
Confidence 55 443 38889876
No 235
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=1.4e-08 Score=117.29 Aligned_cols=189 Identities=14% Similarity=0.016 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------h
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------S 818 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~ 818 (1324)
+....|.++...|++++|+.++++++...+.. ++.....++..++.++...|++++|++.+++... .
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555666666777777777777776655431 1111223445566667777777777666655422 1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhcCH----------------HHHHHHHHHcCCHHHHHhhhhccC----------C
Q psy12365 819 VLKNECADILQQFNKLNDAVTLYESAGNY----------------EKAATCYIQLKNWTKIGQLLPHIK----------S 872 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~y~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~~~----------~ 872 (1324)
.++..+|.++..+|++++|..+|+++... ..++.+|...|++++|..++++.. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 23456677777777777777777665431 123456666777777766665432 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 873 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 952 (1324)
Q Consensus 873 ~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~ 952 (1324)
...+..+|.++...|++++|...|.++. .+... .+.+..... ......+.++...|++++|..++
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~------~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLE------NLLGN-GKYHSDWIS--------NANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHHTT-SCCCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhc-cCcchhHHH--------HHHHHHHHHHHHCCCHHHHHHHH
Confidence 2456778999999999999999998843 33322 111110000 00123456688899999999988
Q ss_pred HHc
Q psy12365 953 ILS 955 (1324)
Q Consensus 953 ~~~ 955 (1324)
.++
T Consensus 239 ~~a 241 (373)
T 1hz4_A 239 RHT 241 (373)
T ss_dssp HHS
T ss_pred HhC
Confidence 877
No 236
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=6.9e-11 Score=145.71 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTL 725 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~ 725 (1324)
+++.|..||..+.+.|++++|+.+|+++.. --.. ..+.+..+|.++..+|++++|+..|.++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--------l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~A--------- 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPE-FAAAHSNLASVLQQQGKLQEALMHYKEA--------- 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH---------
Confidence 367889999999999999999999987632 2223 4567789999999999999999977553
Q ss_pred HHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH
Q psy12365 726 RRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805 (1324)
Q Consensus 726 ~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 805 (1324)
++ ..++...++..+|.++..+|++++|++.|+++++.+|+ +..++.++|.+|.+.|++
T Consensus 70 ----------l~-----l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-------~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 70 ----------IR-----ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-------FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp ----------HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCH
T ss_pred ----------HH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCH
Confidence 22 13566788999999999999999999999999999997 567778899999999999
Q ss_pred HHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 806 RLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 806 ~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
++|++.++++ ++ ..++..+|.+|..+|++++|.+.|+++..
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999887 33 88999999999999999999999988864
No 237
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.18 E-value=3.3e-09 Score=117.28 Aligned_cols=184 Identities=10% Similarity=0.153 Sum_probs=141.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC-------CCCEEEEEE-cCCCCEEEEEEcCCCeEEEE
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL-------PGLCIVMDW-DSEGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~-------~~~i~~i~~-~~d~~~l~~~~~~d~~i~iw 82 (1324)
++-..+.+++++| +|+++++...++.|.+||.+++....+.. ...+.++++ ++++..+++....++.|.+|
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 3446789999999 99988887888999999999888777752 146889999 46776555543226899999
Q ss_pred EcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEec---CCcEEEEEEcCCCCEEEEEEcCC
Q psy12365 83 NTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGIISSNS 154 (1324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~~---~~~i~~~~~~~~g~~l~~~~~~~ 154 (1324)
|..+.........+...+.+++++|+|.++++ .|.+||.+|+....+.. ...+..++++|+|+++++ ...+
T Consensus 106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-~~~~ 184 (286)
T 1q7f_A 106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-DNRA 184 (286)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE-EGGG
T ss_pred CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE-ECCC
Confidence 95544333332344557899999999987776 89999998888777753 246889999999997777 7788
Q ss_pred CcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCCC-cEEEEEcCC
Q psy12365 155 SAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSGG-SVKIYLSKL 196 (1324)
Q Consensus 155 ~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg-~i~~~~~~~ 196 (1324)
+.|.+||.... ..+..++++++|.++++...++ .|.+|+...
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 99999997621 3578999999998888777775 899998543
No 238
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.16 E-value=6.9e-10 Score=117.55 Aligned_cols=179 Identities=5% Similarity=-0.054 Sum_probs=136.5
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|.++...|++++|...|.++. + . .+....++..+|.++...|++++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-------------------~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDAL-------------------K----S-DPKNELAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----H-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------------H----h-CccchHHHHHHHHHHHHcCChHHHHH
Confidence 4556788899999999999999776532 1 1 23345677888888888888888888
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhc-CCHHHHHHHHHhcCC-------hHHHHHHHHHHHHccCHHHHHHHH
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRV-GDFRLGIRLAAESNS-------SVLKNECADILQQFNKLNDAVTLY 841 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~y 841 (1324)
+|++++...|. +...+..++.++... |++++|+++++++.. ..++..+|.++...|++++|+.+|
T Consensus 64 ~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 64 SFRQALSIKPD-------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888776 345566688888888 888888888776522 567788888888888888888888
Q ss_pred HHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 842 ESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK------SATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 842 ~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
+++.. +..++.+|...|++++|..++++.. .+..+..++.++...|++++|..++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 88754 4566778888888888888876653 4556667788888999999998888773
No 239
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.16 E-value=3.9e-10 Score=143.05 Aligned_cols=176 Identities=13% Similarity=0.139 Sum_probs=124.9
Q ss_pred eEEEEecCCCCEEEEEeCC---------CcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 17 VYVCWQRRTGELLATTGRD---------SSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 17 ~~~~~sp~~g~~l~~~~~~---------~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..++||| ||++|++++.+ +.+.+||..+.....+. +.+.+..++|||||+.||++. ++.|++|+..+
T Consensus 65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~ 141 (740)
T 4a5s_A 65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPN 141 (740)
T ss_dssp CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCC
Confidence 4589999 99999998865 66789999665555555 577899999999999999985 68999999988
Q ss_pred CeEEEEec-CCCCC-----------------ceEEEEecCCCEEEE----------------------------------
Q psy12365 87 KKRTIVDS-GLRDP-----------------LTCLVWCKQCSMLQL---------------------------------- 114 (1324)
Q Consensus 87 ~~~~~~~~-~~~~~-----------------v~~~~~s~~~~~l~~---------------------------------- 114 (1324)
+...++.. ++... ...+.|||||+.|+.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 77654322 22222 235899999998876
Q ss_pred -------EEEEEeCCC---C---eEEEEe-------cCCcEEEEEEcCCCCEEEEEEc---CCCcEEEeecccC------
Q psy12365 115 -------SVSIYNKHG---K---LIDKIT-------LPGLCIVMDWDSEGDLLGIISS---NSSAVNVWTLLTY------ 165 (1324)
Q Consensus 115 -------~i~v~d~~g---~---~~~~~~-------~~~~i~~~~~~~~g~~l~~~~~---~~~~i~iwd~~~~------ 165 (1324)
+|.+||..+ . ....+. +...+..++|+|||+.++.... .+..|.+||..+.
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 156788766 4 344443 4456889999999997766222 2336889986521
Q ss_pred ------------CC-----eeEEEEcCCCCEEE-EEe-CCCc--EEEEEcC
Q psy12365 166 ------------TL-----GERISWSDDGQLLA-VTT-SGGS--VKIYLSK 195 (1324)
Q Consensus 166 ------------~~-----i~~~~~s~~~~~l~-~~~-~dg~--i~~~~~~ 195 (1324)
.. ...+.|+|||+.++ ..+ .+|. |++|+..
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 11 23789999999877 555 4454 5555544
No 240
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=3.2e-09 Score=117.43 Aligned_cols=179 Identities=11% Similarity=0.022 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHc
Q psy12365 763 QHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQF 831 (1324)
Q Consensus 763 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~ 831 (1324)
++++|+..|+++ +.+|...|+|++|++.+.++.. ..++..+|.+|..+
T Consensus 32 ~~~~A~~~~~~a---------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHH---------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH---------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC
Confidence 599999999884 5567789999999988876622 45788999999999
Q ss_pred cCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhhChHHHHHHHH
Q psy12365 832 NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAM-GSYRESVGAYERAEDYDNVVRVDL 910 (1324)
Q Consensus 832 g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~y~~a~~~~~a~~~~~ 910 (1324)
|++++|+.+|+++.. ++...|++..+. .++..+|.+|... |++++|+.+|.+| +.+..
T Consensus 91 g~~~~A~~~~~~Al~------l~~~~g~~~~~a---------~~~~~lg~~~~~~lg~~~~A~~~~~~A------l~~~~ 149 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQ------IFTHRGQFRRGA---------NFKFELGEILENDLHDYAKAIDCYELA------GEWYA 149 (292)
T ss_dssp TCHHHHHHHHHHHHH------HHHHTTCHHHHH---------HHHHHHHHHHHHTTCCHHHHHHHHHHH------HHHHH
T ss_pred CCHHHHHHHHHHHHH------HHHHcCCHHHHH---------HHHHHHHHHHHHhhcCHHHHHHHHHHH------HHHHH
Confidence 999999999887764 445556655443 3466789999996 9999999999994 44444
Q ss_pred hccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCC----CCH
Q psy12365 911 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE----PNP 986 (1324)
Q Consensus 911 ~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~----~~~ 986 (1324)
. .+++..+ ...+..+|.++.++|+|++|+.+|.++. . .. ...+ ...
T Consensus 150 ~-~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al------~---------~~-----~~~~~~~~~~~ 199 (292)
T 1qqe_A 150 Q-DQSVALS---------NKCFIKCADLKALDGQYIEASDIYSKLI------K---------SS-----MGNRLSQWSLK 199 (292)
T ss_dssp H-TTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH------H---------TT-----SSCTTTGGGHH
T ss_pred h-CCChHHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHH------H---------HH-----hcCCcccHHHH
Confidence 2 2222211 2336789999999999999999998771 1 00 0011 112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhC
Q psy12365 987 VELKRLAIHFEEDKDMFRAAQYYYHAK 1013 (1324)
Q Consensus 987 ~~~~~la~~~~~~g~~~~A~~~y~~~g 1013 (1324)
..+..+|.++..+|++.+|...|.++-
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999988873
No 241
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=2.7e-10 Score=125.68 Aligned_cols=224 Identities=13% Similarity=-0.008 Sum_probs=149.9
Q ss_pred HhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHH
Q psy12365 658 LQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALA 737 (1324)
Q Consensus 658 l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~ 737 (1324)
...++++.|+.+|.++........-..-.. ....+..+|.++...|++++|+..|.+ |+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------al~ 71 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKEAAHLLND-------------------ALA 71 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcccHHHHHHHHHH-------------------HHH
Confidence 345677777777776543211100000011 345668899999999999999997754 344
Q ss_pred HHHhc---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC-CChhhHHhhhchHHHHHHhcCCHHHHHHHHH
Q psy12365 738 LATSL---GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDI-QDPECQRKCKEGIARTSIRVGDFRLGIRLAA 813 (1324)
Q Consensus 738 ~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 813 (1324)
+.++. .++....++..+|.++...|++++|+++|++++....... .........+..+|.++...|++++|+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44332 2234457889999999999999999999999998731000 0013356778889999999999999999887
Q ss_pred hcC----------C---hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHH-----------------HHHHHHH------c
Q psy12365 814 ESN----------S---SVLKNECADILQQFNKLNDAVTLYESAGNYEK-----------------AATCYIQ------L 857 (1324)
Q Consensus 814 ~~~----------~---~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~-----------------~~~~~~~------~ 857 (1324)
++. . ..++..+|.++..+|++++|..+|+++..... ....+.. .
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHH
Confidence 762 2 45788999999999999999999999875321 1122222 2
Q ss_pred CCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhC
Q psy12365 858 KNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAED 901 (1324)
Q Consensus 858 ~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~ 901 (1324)
..+.++...++... ...++..+|.++...|++++|+.+|.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 232 APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22444554554444 345777899999999999999999998653
No 242
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=1.7e-09 Score=119.62 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=136.0
Q ss_pred cHHHHHHHHHhhCCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHH
Q psy12365 633 NWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQR 712 (1324)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 712 (1324)
++++|...+ ...+..+...|++++|+.+|.++...... ...... ....+..+|.++..+|++++|+.+
T Consensus 32 ~~~~A~~~~---------~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~-~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLC---------VQAATIYRLRKELNLAGDSFLKAADYQKK--AGNEDE-AGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHH---------HHHHHHHHHTTCTHHHHHHHHHHHHHHHH--TTCHHH-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCHHH-HHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777765 44577888999999999999987543210 000011 245678899999999999999998
Q ss_pred HHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHc-CCHHHHHHHHHHhcccCCCCCCChhhHHhh
Q psy12365 713 YLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMT-GQHAQALSFYQKSMELATPDIQDPECQRKC 791 (1324)
Q Consensus 713 ~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~ 791 (1324)
|.+ |++++...|++..+ ..++..+|.++... |++++|+.+|++++...|... .......+
T Consensus 100 ~~~------Al~l~~~~g~~~~~------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-~~~~~~~~ 160 (292)
T 1qqe_A 100 LEN------AIQIFTHRGQFRRG------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-SVALSNKC 160 (292)
T ss_dssp HHH------HHHHHHHTTCHHHH------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHH------HHHHHHHcCCHHHH------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC-ChHHHHHH
Confidence 765 55566555554433 34567899999996 999999999999998876410 11122456
Q ss_pred hchHHHHHHhcCCHHHHHHHHHhcC----C-h-------HHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 792 KEGIARTSIRVGDFRLGIRLAAESN----S-S-------VLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 792 ~~~la~~~~~~g~~~~A~~~~~~~~----~-~-------~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+..+|.++.+.|++++|++.++++. + . ..+..+|.++..+|++++|...|+++..
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7789999999999999999988762 1 1 2678899999999999999999999876
No 243
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.13 E-value=2.2e-08 Score=111.22 Aligned_cols=178 Identities=10% Similarity=0.030 Sum_probs=127.5
Q ss_pred CCCCeeEEEEecCCCC-EEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE
Q psy12365 12 HGPGDVYVCWQRRTGE-LLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR 89 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~ 89 (1324)
+.....++.|+| +|+ +++++..++.|..|+..+. ...+. ....+.+++|+|+|+.+++... ++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~-~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHG-LRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETT-TTEEEEECSTTCCE
T ss_pred CCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecC-CCeEEEEcCCCCcE
Confidence 445678999999 998 6777778899999999777 66666 5577999999999997665544 68999999977766
Q ss_pred EEEecCC----CCCceEEEEecCCCEEEE----------------------EEEEEeCCCCeEEEEecCCcEEEEEEcCC
Q psy12365 90 TIVDSGL----RDPLTCLVWCKQCSMLQL----------------------SVSIYNKHGKLIDKITLPGLCIVMDWDSE 143 (1324)
Q Consensus 90 ~~~~~~~----~~~v~~~~~s~~~~~l~~----------------------~i~v~d~~g~~~~~~~~~~~i~~~~~~~~ 143 (1324)
....... ...+..++++|+|.++++ .|..++..|+.............++|+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTT
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCC
Confidence 5443221 234678999999998874 34455555554444444556788999999
Q ss_pred CCEEEEEEcCCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 144 GDLLGIISSNSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 144 g~~l~~~~~~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
|+.+++ .+.++.|.+|++... ..+..++++++|++.++. ++.|.+|+..
T Consensus 183 g~~lv~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 183 GNLLVS-DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SCEEEE-ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCEEEE-eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 998855 777888888887511 123467888888755444 6777777654
No 244
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.11 E-value=2.9e-10 Score=144.51 Aligned_cols=176 Identities=11% Similarity=0.106 Sum_probs=123.4
Q ss_pred CeeEEEEecCCCCEEEEEeC---------CCcEEEEECCCcEE-EEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 15 GDVYVCWQRRTGELLATTGR---------DSSVSIYNKHGKLI-DKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~---------~~~v~v~~~~~~~~-~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
.+.+++||| ||++|++++. ++.|++||..+... ......+.+..++|||||+.|+++. ++.|++|+.
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~--~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY--QNNIYLKQR 137 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE--TTEEEEESS
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE--CCeEEEEeC
Confidence 488999999 9999999876 68999999865443 1012346688999999999999985 689999999
Q ss_pred CCCeEEEEe-cCCCCC-----------------ceEEEEecCCCEEEE--------------------------------
Q psy12365 85 YTKKRTIVD-SGLRDP-----------------LTCLVWCKQCSMLQL-------------------------------- 114 (1324)
Q Consensus 85 ~~~~~~~~~-~~~~~~-----------------v~~~~~s~~~~~l~~-------------------------------- 114 (1324)
.+++...+. .++... ..+++|||||+.|++
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 887765443 222221 258999999999987
Q ss_pred -------EEEEEeCCCCeE---EEE-------ecCCcEEEEEEcCCCCEEEEEEcCC----CcEEEee----cccC----
Q psy12365 115 -------SVSIYNKHGKLI---DKI-------TLPGLCIVMDWDSEGDLLGIISSNS----SAVNVWT----LLTY---- 165 (1324)
Q Consensus 115 -------~i~v~d~~g~~~---~~~-------~~~~~i~~~~~~~~g~~l~~~~~~~----~~i~iwd----~~~~---- 165 (1324)
.|++||..+... ..+ .+.+.+..++|+|||+++++ .... ..|.+|| ..+.
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~-~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ-WLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE-EEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE-EeccccCeEEEEEEcccCCCCCCceEE
Confidence 145788775432 122 14567899999999876665 4322 2488889 5411
Q ss_pred ----------CCee-----EEEEcCCCCEEEE--EeCCCcEEEEEc
Q psy12365 166 ----------TLGE-----RISWSDDGQLLAV--TTSGGSVKIYLS 194 (1324)
Q Consensus 166 ----------~~i~-----~~~~s~~~~~l~~--~~~dg~i~~~~~ 194 (1324)
..+. .+.|+|||+.+++ ...+|...+|..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~ 342 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYI 342 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEE
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEE
Confidence 2244 7899999997655 445665555543
No 245
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.9e-09 Score=118.82 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=137.2
Q ss_pred HHHHHHHHhc---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCC-CCChhhHHhhhchHHHHHHhcCCHHHH
Q psy12365 733 REALALATSL---GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPD-IQDPECQRKCKEGIARTSIRVGDFRLG 808 (1324)
Q Consensus 733 ~~Al~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 808 (1324)
++|+.++++. .++....++..+|.++...|++++|+.+|++++...... ..+......++..+|.+|...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 4455555543 234456788999999999999999999999998773100 001134567788899999999999999
Q ss_pred HHHHHhcCC-------------hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC-CHH
Q psy12365 809 IRLAAESNS-------------SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SAT 874 (1324)
Q Consensus 809 ~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~ 874 (1324)
+++++++.. ..++..+|.++...|++++|..+|+++....... .+ ...+ ...
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~---------~~~~~~~~ 170 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR-----LG---------PDDPNVAK 170 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-----SC---------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cC---------CCCHHHHH
Confidence 998877521 5677899999999999999999998876431110 00 0000 244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHH----------------HHHhc------cCCHHHHHHHHHH-----hc
Q psy12365 875 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR----------------VDLDH------LNDIRHAVDIVKA-----KK 927 (1324)
Q Consensus 875 ~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~----------------~~~~~------~~~~~~a~~~~~~-----~~ 927 (1324)
++..+|.++...|++++|+.+|.++.+...... ..... ......+...... ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 667788888889999999988888543211100 00000 0000111111110 11
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 928 CTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 928 ~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
...+...+|.+|...|++++|+.+|.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345678999999999999999999876
No 246
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=2.5e-09 Score=113.50 Aligned_cols=133 Identities=10% Similarity=0.068 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC-CCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHH
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELAT-PDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLK 821 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~ 821 (1324)
+..+...|..+...|+|++|+..|++++...| . +...+..+|.++.+.|++++|++.++++ ++ ..++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 79 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY 79 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence 47889999999999999999999999999987 4 3345556999999999999999998887 22 7789
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhC
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED 901 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~ 901 (1324)
..+|.++..+|++++|+..|+++.....- +. ..... -..++..+|.++...|++++|++.|.++.+
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~--------~~-~~~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPG--------NA-TIEKL-----YAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CH-HHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC--------cH-HHHHH-----HHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999887642100 00 00000 013566778888888888888888888653
No 247
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=1.1e-09 Score=122.20 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
++..+|.+|..+|++++|+.+|+++.. ++...|+...+. .++..+|.+|.. |++++|+.+|.+
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~------l~~~~g~~~~~a---------~~~~~lg~~~~~-g~~~~A~~~~~~- 140 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASV------MYVENGTPDTAA---------MALDRAGKLMEP-LDLSKAVHLYQQ- 140 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHH------HHHTTTCHHHHH---------HHHHHHHHHHTT-TCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH------HHHHcCCHHHHH---------HHHHHHHHHHHc-CCHHHHHHHHHH-
Confidence 667788999999999999999887753 344455444332 356678999988 999999999999
Q ss_pred hChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 900 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 900 ~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
|+.+... .+++..+ ..++..+|.+|.++|+|++|+.+|.++
T Consensus 141 -----Al~~~~~-~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 141 -----AAAVFEN-EERLRQA---------AELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp -----HHHHHHH-TTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHh-CCChhHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444443 3333322 234678999999999999999998876
No 248
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.05 E-value=1.9e-09 Score=125.36 Aligned_cols=185 Identities=12% Similarity=0.000 Sum_probs=126.9
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-cEEEEEeC-CCCEEEEE--EcCCCCEEEEEEc------------
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-KLIDKITL-PGLCIVMD--WDSEGDLLGIISS------------ 74 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~~~~~~~~-~~~i~~i~--~~~d~~~l~~~~~------------ 74 (1324)
+|...+..+.|+| ||+.|++++.++.|++||..+ +....... .+.+.... ++|||..++....
T Consensus 78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 3444455678999 999999999999999999854 44444443 33343344 4899998875431
Q ss_pred ---------CCCeEEEEEcCCCeEEEEecCCCCCceEEEEec-CCCEEEE-----------EEEEEeCCCCeEEEEecCC
Q psy12365 75 ---------NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCK-QCSMLQL-----------SVSIYNKHGKLIDKITLPG 133 (1324)
Q Consensus 75 ---------~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~-----------~i~v~d~~g~~~~~~~~~~ 133 (1324)
.+..|++||+.+++...+. .+...+..+.|+| +|+.|+. .|.++|..+.....+....
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred hhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 1467999999988766554 4666789999999 9998876 4677787766655554322
Q ss_pred ---cEEEEEEcCCCCEEEEEEcCCC----cEEEeecccCC--C-------------eeEEEEcCCCCEEEEE--------
Q psy12365 134 ---LCIVMDWDSEGDLLGIISSNSS----AVNVWTLLTYT--L-------------GERISWSDDGQLLAVT-------- 183 (1324)
Q Consensus 134 ---~i~~~~~~~~g~~l~~~~~~~~----~i~iwd~~~~~--~-------------i~~~~~s~~~~~l~~~-------- 183 (1324)
.+..+.|+|||+.|++++..++ .|.+||+.+.. . +..+.|+|||+.|++.
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 5778999999998876343322 38999987431 1 1123699999988764
Q ss_pred -eCCCcEEEEEcCCC
Q psy12365 184 -TSGGSVKIYLSKLP 197 (1324)
Q Consensus 184 -~~dg~i~~~~~~~~ 197 (1324)
..++.|++|+....
T Consensus 316 ~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 316 IENDPFLYVFNMKNG 330 (388)
T ss_dssp -CCCCEEEEEETTTT
T ss_pred cCCCCEEEEEeccCC
Confidence 34557888887653
No 249
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.05 E-value=5.9e-10 Score=130.17 Aligned_cols=181 Identities=9% Similarity=-0.035 Sum_probs=126.6
Q ss_pred CCeeEEEEecCCCCEEEEEeCC---CcEEEEECCCcEEEEEe-CCCCEE-EEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 14 PGDVYVCWQRRTGELLATTGRD---SSVSIYNKHGKLIDKIT-LPGLCI-VMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~---~~v~v~~~~~~~~~~~~-~~~~i~-~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
..+..++||| ||++|+++... ..|.+||..+.....+. ...... .+.|+|||+.|+++.. ++.|++||..+++
T Consensus 36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETLE 113 (396)
T ss_dssp CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTCC
T ss_pred eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCCC
Confidence 3477889999 99999887643 36888898665555554 333333 3789999999999988 7899999999887
Q ss_pred EEEEecCCCCCceE-------------------EEEecCCCEEEE----------EEEEEeCC-CCeEEEEecCCcEEEE
Q psy12365 89 RTIVDSGLRDPLTC-------------------LVWCKQCSMLQL----------SVSIYNKH-GKLIDKITLPGLCIVM 138 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~----------~i~v~d~~-g~~~~~~~~~~~i~~~ 138 (1324)
...+...+...... +.|+|+++.+++ .|.+||.. |+......+...+..+
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHP 193 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccc
Confidence 76665544432222 356777776542 78899987 4444444466778999
Q ss_pred EEcC-CCCEEEEEEcCC-----CcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCC-----CcEEEEEcCC
Q psy12365 139 DWDS-EGDLLGIISSNS-----SAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSG-----GSVKIYLSKL 196 (1324)
Q Consensus 139 ~~~~-~g~~l~~~~~~~-----~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~d-----g~i~~~~~~~ 196 (1324)
.|+| +|..|++++... ..|.+||.... ..+..+.|+|||+.|++++.+ +.|++|+...
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 9999 888887733221 35778877521 136678999999988776543 3488887654
No 250
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.05 E-value=9.2e-07 Score=106.00 Aligned_cols=171 Identities=5% Similarity=-0.069 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC--CCeEEEEecCCCCCce
Q psy12365 25 TGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY--TKKRTIVDSGLRDPLT 101 (1324)
Q Consensus 25 ~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~ 101 (1324)
.+.++++...++.|.++|. +++.+..+.....+.++.|+|||+++.+++. ++.|.+||+. +++....... .....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 4456666677899999998 5678888886667889999999999999887 9999999995 6665544433 33468
Q ss_pred EEEEe----cCCCEEEE------EEEEEeCC-CCeEEEEecC------------CcEEEEEEcCCCCEEEEEEcCCCcEE
Q psy12365 102 CLVWC----KQCSMLQL------SVSIYNKH-GKLIDKITLP------------GLCIVMDWDSEGDLLGIISSNSSAVN 158 (1324)
Q Consensus 102 ~~~~s----~~~~~l~~------~i~v~d~~-g~~~~~~~~~------------~~i~~~~~~~~g~~l~~~~~~~~~i~ 158 (1324)
.+.|+ |+|+++++ ++.++|.. .+.++.+... ..+..+..++++..+++....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 69999887 88999965 5666665522 15778888998776655366789999
Q ss_pred EeecccC-----------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q psy12365 159 VWTLLTY-----------TLGERISWSDDGQLLAVTT-SGGSVKIYLSKLP 197 (1324)
Q Consensus 159 iwd~~~~-----------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~ 197 (1324)
++|.... .....+.|+|||++++++. .++.|.++|+...
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 9987621 3456789999999987765 4678888887654
No 251
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.04 E-value=1.1e-08 Score=115.55 Aligned_cols=183 Identities=10% Similarity=-0.012 Sum_probs=134.3
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCc--EEEEEeC----------CCCEEEEEEcC-CCCEEEEEEcCCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGK--LIDKITL----------PGLCIVMDWDS-EGDLLGIISSNSS 77 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~--~~~~~~~----------~~~i~~i~~~~-d~~~l~~~~~~d~ 77 (1324)
++...+..++++| +|+++++...++.|.+|+.+|+ .+..+.. -..+.+++++| +|..+++.+..++
T Consensus 88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 3445788999999 9998888888899999999887 5665531 23588999999 6776666642389
Q ss_pred eEEEEEcCCCeEEEEecC----------CCCCceEEEEecC-CCEEEE-----EEEEEeCC-CCeEEEEe---cCCcEEE
Q psy12365 78 AVNVWNTYTKKRTIVDSG----------LRDPLTCLVWCKQ-CSMLQL-----SVSIYNKH-GKLIDKIT---LPGLCIV 137 (1324)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~----------~~~~v~~~~~s~~-~~~l~~-----~i~v~d~~-g~~~~~~~---~~~~i~~ 137 (1324)
.|++|+.. +.....+.. +...+..++++|+ +.++++ .|.+||.+ |+....+. +...+..
T Consensus 167 ~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 167 RIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred eEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 99999965 444444421 2234889999999 666555 89999998 98888875 3457889
Q ss_pred EEEcCCCCEEEEE------EcCCCcEEEeecccC-------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 138 MDWDSEGDLLGII------SSNSSAVNVWTLLTY-------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 138 ~~~~~~g~~l~~~------~~~~~~i~iwd~~~~-------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++|+| |..+..- ...+..|.+|+..+. ..+..++++|+|.++++.+.++.|.+|+...
T Consensus 246 ~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 246 ISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99999 4333330 234458899986521 4578999999997777778889999998653
No 252
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.1e-08 Score=111.77 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=125.7
Q ss_pred ccCHHHHHHHHHHhcCHHHHHHHHHH-cCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHH
Q psy12365 831 FNKLNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD 909 (1324)
Q Consensus 831 ~g~~~~A~~~y~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~ 909 (1324)
.|++++|..+++++.+..+. .+.. .+++++|..++. ..|.++...|++++|+.+|.++ +.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~--~~~~~~~~~~~A~~~~~---------~a~~~~~~~g~~~~A~~~~~~a------l~~~ 66 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT--SFMKWKPDYDSAASEYA---------KAAVAFKNAKQLEQAKDAYLQE------AEAH 66 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--CSSSCSCCHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHH------HHHH
T ss_pred cchHHHHHHHHHHHHHHccc--cccCCCCCHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHHH------HHHH
Confidence 35555666666555432110 0111 345555555443 2366777888899999888884 4444
Q ss_pred HhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHH
Q psy12365 910 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL 989 (1324)
Q Consensus 910 ~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~ 989 (1324)
.+ .+++..+... +..+|.+|..+|++++|+.+|.++ +.+..+.+.. ......+
T Consensus 67 ~~-~~~~~~~a~~---------~~~lg~~~~~~g~~~~A~~~~~~A------l~l~~~~g~~-----------~~~a~~~ 119 (307)
T 2ifu_A 67 AN-NRSLFHAAKA---------FEQAGMMLKDLQRMPEAVQYIEKA------SVMYVENGTP-----------DTAAMAL 119 (307)
T ss_dssp HH-TTCHHHHHHH---------HHHHHHHHHHTTCGGGGHHHHHHH------HHHHHTTTCH-----------HHHHHHH
T ss_pred HH-cCCHHHHHHH---------HHHHHHHHHhCCCHHHHHHHHHHH------HHHHHHcCCH-----------HHHHHHH
Confidence 43 4455443332 568899999999999999998876 2322211110 0123556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhcccCHHHHHHHHHhhccccCCCCCC
Q psy12365 990 KRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRN 1069 (1324)
Q Consensus 990 ~~la~~~~~~g~~~~A~~~y~~~g~~~~A~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1069 (1324)
..+|.+|.. |++.+|..+|.++ +.++..
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~A------l~~~~~--------------------------------------------- 147 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQA------AAVFEN--------------------------------------------- 147 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHH------HHHHHH---------------------------------------------
T ss_pred HHHHHHHHc-CCHHHHHHHHHHH------HHHHHh---------------------------------------------
Confidence 677776665 6666665555432 222222
Q ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Q psy12365 1070 PKFLYRVLMNTGDYVAASSCALDVARDEAARGSYRNCHETLYSTIQELKKHKLQVGNDLMAGLMIIHSYLLARYHVRNAN 1149 (1324)
Q Consensus 1070 ~~~l~~~y~~~~~~~~A~~~~~~~a~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~y~l~~~~~~~g~ 1149 (1324)
.++...+...+..+|..+...|+|++|...+.++.......+. ........+.++..+...|+
T Consensus 148 ----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 148 ----------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-------YPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTC
T ss_pred ----------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHHcCC
Confidence 1222233333444455555566666666666666555433221 01112233445777888999
Q ss_pred hhhHHHHHHHHHhhccCCCc
Q psy12365 1150 HSLAAPLLIRVAENISFFPL 1169 (1324)
Q Consensus 1150 ~~~A~~~l~~~~~~~~~~p~ 1169 (1324)
+++|...+.+.. ....++.
T Consensus 211 ~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHh-CCCCCCC
Confidence 999999888777 5544543
No 253
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.04 E-value=2.4e-09 Score=134.50 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=126.8
Q ss_pred EEEEe--cCCCCE-EEEEeC-CCcEEEEECC--C-cEEEEEeC------CCCEEEEEEcCCCCEEEEEEcCC--------
Q psy12365 18 YVCWQ--RRTGEL-LATTGR-DSSVSIYNKH--G-KLIDKITL------PGLCIVMDWDSEGDLLGIISSNS-------- 76 (1324)
Q Consensus 18 ~~~~s--p~~g~~-l~~~~~-~~~v~v~~~~--~-~~~~~~~~------~~~i~~i~~~~d~~~l~~~~~~d-------- 76 (1324)
.+.|+ | ||+. |+.++. +..|++++.. | .....+.. ...+.+++|||||+.|++++. +
T Consensus 81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~-~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE-EFTGEGPSD 158 (662)
T ss_dssp CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE-EECSSSTTC
T ss_pred cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEe-cccCCCCCC
Confidence 56666 9 9998 877654 5678888877 3 44444442 346789999999999998886 4
Q ss_pred --CeEEEEEcCC------CeEEEEec-CCCCCceEEEEecCCCEEEE-------------EEEEEeCCC-C---eEEEEe
Q psy12365 77 --SAVNVWNTYT------KKRTIVDS-GLRDPLTCLVWCKQCSMLQL-------------SVSIYNKHG-K---LIDKIT 130 (1324)
Q Consensus 77 --~~i~iw~~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~-------------~i~v~d~~g-~---~~~~~~ 130 (1324)
..|++||..+ +....+ . .+...+..++|||||+.|++ .|++||..+ . ....+.
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVREL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred ceeEEEEEECCCCccccCCceeEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 5899999988 665443 4 55567888999999999876 488999873 2 333433
Q ss_pred --cCCcEEEEEEcCCCCEEEEEEcCCC--cEEEeecccC---------C---------CeeEEEEcCCCCEEEEEeCCCc
Q psy12365 131 --LPGLCIVMDWDSEGDLLGIISSNSS--AVNVWTLLTY---------T---------LGERISWSDDGQLLAVTTSGGS 188 (1324)
Q Consensus 131 --~~~~i~~~~~~~~g~~l~~~~~~~~--~i~iwd~~~~---------~---------~i~~~~~s~~~~~l~~~~~dg~ 188 (1324)
+.+.+..+.|+|||+++++ +..++ .|.+||..+. . .+..+.|+|+++++++++. |.
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCceEcceEECCCCeEEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 3578999999999996665 77777 5555555311 1 1457889999999999988 99
Q ss_pred EEEEEcC
Q psy12365 189 VKIYLSK 195 (1324)
Q Consensus 189 i~~~~~~ 195 (1324)
+++|.++
T Consensus 316 ~~l~~~d 322 (662)
T 3azo_A 316 AVLGILD 322 (662)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 9999654
No 254
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.03 E-value=2e-09 Score=109.84 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHH
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNEC 824 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l 824 (1324)
.+..+|..+...|++++|+..|++++...|. +...+..++.++...|++++|++++++. ++ ..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344445555555555555555555544443 2333334455555555555555544443 11 4444455
Q ss_pred HHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHcCCHHH
Q psy12365 825 ADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRE 891 (1324)
Q Consensus 825 ~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~ 891 (1324)
|..+...|++++|..+|+++.. +...+.+|...|++++|..++++.. .+.++..+|.++...|++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554432 2333444555555555555444432 56788889999999999999
Q ss_pred HHHHHHHhh
Q psy12365 892 SVGAYERAE 900 (1324)
Q Consensus 892 A~~~y~~a~ 900 (1324)
|+..|.++.
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999843
No 255
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=4e-09 Score=111.98 Aligned_cols=158 Identities=6% Similarity=-0.020 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHH
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALT 724 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~ 724 (1324)
.++..|..+|..++..|++++|+..|.++..... .. ....+..+|.++...|++++|+..|.++.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al------- 69 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQ-DSVTAYNCGVCADNIKKYKEAADYFDIAI------- 69 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHH-------
Confidence 4578899999999999999999999987643211 02 34556779999999999999999776532
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC
Q psy12365 725 LRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD 804 (1324)
Q Consensus 725 ~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 804 (1324)
...+....++..+|.++...|++++|+..|++++...|............+..++.++...|+
T Consensus 70 -----------------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 70 -----------------KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp -----------------HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 234567788999999999999999999999999999997100000112557779999999999
Q ss_pred HHHHHHHHHhcCC---h----HHHHHHHHHHHHccCH
Q psy12365 805 FRLGIRLAAESNS---S----VLKNECADILQQFNKL 834 (1324)
Q Consensus 805 ~~~A~~~~~~~~~---~----~~~~~l~~~~~~~g~~ 834 (1324)
+++|++.++++.. . .++..+|.++..+|+.
T Consensus 133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 133 IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999998844 3 6788899999877765
No 256
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2.5e-09 Score=116.36 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=117.1
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC--
Q psy12365 744 SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-- 817 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-- 817 (1324)
.+..+..++.+|..+...|+|++|+..|++++...|.. .....++..+|.+|.+.|++++|++.+++. |+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH----EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 34556777888888888888888888888888888761 112456667888888888888888887775 21
Q ss_pred --hHHHHHHHHHHHH--------ccCHHHHHHHHHHhcC--------H-----------------HHHHHHHHHcCCHHH
Q psy12365 818 --SVLKNECADILQQ--------FNKLNDAVTLYESAGN--------Y-----------------EKAATCYIQLKNWTK 862 (1324)
Q Consensus 818 --~~~~~~l~~~~~~--------~g~~~~A~~~y~~~~~--------~-----------------~~~~~~~~~~~~~~~ 862 (1324)
..+++.+|.++.. +|++++|+..|+++.. . ..++.+|...|+|++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 5678888888888 8888888888888753 1 455788888899999
Q ss_pred HHhhhhccC--------CHHHHHHHHHHHHHc----------CCHHHHHHHHHHh
Q psy12365 863 IGQLLPHIK--------SATTFIQYAKAKEAM----------GSYRESVGAYERA 899 (1324)
Q Consensus 863 A~~~~~~~~--------~~~~~~~~a~~~~~~----------g~~~~A~~~y~~a 899 (1324)
|+..+++.. .+.++..+|.++... |++++|+..|.++
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 988887653 245788889999876 8889999999883
No 257
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.02 E-value=1e-08 Score=117.04 Aligned_cols=168 Identities=12% Similarity=0.132 Sum_probs=117.4
Q ss_pred CeeEEEEecCCCCEEEEEeCC---C--cEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcC-------------
Q psy12365 15 GDVYVCWQRRTGELLATTGRD---S--SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSN------------- 75 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~~---~--~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~------------- 75 (1324)
.+..++||| ||++|++++.+ + .|.+|+..+.....+. .+. +..+.|+|||+.|++++..
T Consensus 60 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 467899999 99999988754 3 3778887654444444 445 9999999999999988741
Q ss_pred -------------CCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE--------------EEEEEeCCCCeEEE
Q psy12365 76 -------------SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL--------------SVSIYNKHGKLIDK 128 (1324)
Q Consensus 76 -------------d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--------------~i~v~d~~g~~~~~ 128 (1324)
...|++||+.+++....+.. . .+..+.|+|+| ++++ .|.++| .|+ ...
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~ 212 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEK 212 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEE
Confidence 25799999998877233333 3 78999999999 6554 134455 443 333
Q ss_pred EecCCcEEEEEEcCCCCEEEEEEcC-------CCcEEEeeccc---------CCCeeE-EEEcCCCCEEEEEeCCCcEEE
Q psy12365 129 ITLPGLCIVMDWDSEGDLLGIISSN-------SSAVNVWTLLT---------YTLGER-ISWSDDGQLLAVTTSGGSVKI 191 (1324)
Q Consensus 129 ~~~~~~i~~~~~~~~g~~l~~~~~~-------~~~i~iwd~~~---------~~~i~~-~~~s~~~~~l~~~~~dg~i~~ 191 (1324)
+...+.+.. ++|||+.|++.+.. ...|.+|| .. ...+.. +.|+ || ++++++.+|.+++
T Consensus 213 l~~~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 213 MFEKVSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EEEEESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred eccCcceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 332244444 49999998883332 24678887 31 145665 8999 88 8889999999999
Q ss_pred EEcC
Q psy12365 192 YLSK 195 (1324)
Q Consensus 192 ~~~~ 195 (1324)
| +.
T Consensus 288 ~-~~ 290 (347)
T 2gop_A 288 Y-IW 290 (347)
T ss_dssp E-EE
T ss_pred E-Ec
Confidence 9 75
No 258
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.00 E-value=6.1e-08 Score=109.75 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=133.4
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCC----CeEEEEEc
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNS----SAVNVWNT 84 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d----~~i~iw~~ 84 (1324)
.+...+.+++|+| +|++++++..++.|.+||.++.....+. +...+.+++|+|+|+.+++... + +.|.+||.
T Consensus 42 ~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~-~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 42 KKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG-DFKSTGGIFAATE 119 (333)
T ss_dssp SSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT-TSSSCCEEEEECT
T ss_pred ccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCC-CCCCCceEEEEeC
Confidence 3556678999999 9998877888899999998654443332 5678999999999987776654 5 68999999
Q ss_pred CCCeEEEEec--CCCCCceEEEEecCCCEEEE-----------EEEEEeCCCCeEEEE-ecCCcEEEEEEcCCCCEEEEE
Q psy12365 85 YTKKRTIVDS--GLRDPLTCLVWCKQCSMLQL-----------SVSIYNKHGKLIDKI-TLPGLCIVMDWDSEGDLLGII 150 (1324)
Q Consensus 85 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~-----------~i~v~d~~g~~~~~~-~~~~~i~~~~~~~~g~~l~~~ 150 (1324)
.++....... .+...+..+.++|+|.++++ .|..||..+.....+ .....+..++|+|+|+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE
Confidence 8877654433 24456899999999987776 244555554333332 233457889999999976653
Q ss_pred EcCCCcEEEeecccC------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 151 SSNSSAVNVWTLLTY------------------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 151 ~~~~~~i~iwd~~~~------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.+.++.|.+|+..+. ..+..+.++++|.++++...++.|.+|+.+
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 566789999988421 145678999999877777777889999864
No 259
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.00 E-value=2.4e-08 Score=112.58 Aligned_cols=183 Identities=11% Similarity=0.029 Sum_probs=133.5
Q ss_pred CCCeeEEEEecCCCCEEEEEeCC------------------------CcEEEEEC-CCcEEEEEe--CCCCEEEEEEcCC
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRD------------------------SSVSIYNK-HGKLIDKIT--LPGLCIVMDWDSE 65 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~------------------------~~v~v~~~-~~~~~~~~~--~~~~i~~i~~~~d 65 (1324)
-+.+.+++++| +|+++++.+.+ +.|.+||. +|+....+. +-..+.+++++|+
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 35689999999 99999887766 47999998 488776655 2357899999999
Q ss_pred CCEEEEEEcCCCeEEEEEcCCC--eEEEEe--------cCCCCCceEEEEec-CCCEEEE------EEEEEeCCCCeEEE
Q psy12365 66 GDLLGIISSNSSAVNVWNTYTK--KRTIVD--------SGLRDPLTCLVWCK-QCSMLQL------SVSIYNKHGKLIDK 128 (1324)
Q Consensus 66 ~~~l~~~~~~d~~i~iw~~~~~--~~~~~~--------~~~~~~v~~~~~s~-~~~~l~~------~i~v~d~~g~~~~~ 128 (1324)
|+.+++... ++.|++|+..+. ....+- .++...+..++++| +|.++++ .|.+||.+|+....
T Consensus 102 g~l~v~d~~-~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVA-LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ 180 (329)
T ss_dssp SCEEEEETT-TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred CCEEEEECC-CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence 996655544 899999998765 233221 23444689999999 7887777 79999988988877
Q ss_pred EecCC-----------cEEEEEEcCC-CCEEEEEEcCCCcEEEeecccC------------CCeeEEEEcCCCCEEEEE-
Q psy12365 129 ITLPG-----------LCIVMDWDSE-GDLLGIISSNSSAVNVWTLLTY------------TLGERISWSDDGQLLAVT- 183 (1324)
Q Consensus 129 ~~~~~-----------~i~~~~~~~~-g~~l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~- 183 (1324)
+...+ ....++++|+ |.++++ ...++.|++|+..+. ..+..+.|+| |..+.+.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~-d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA-DRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEE-ETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEE-ECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 75222 3789999999 666666 888999999998721 3567888988 4333332
Q ss_pred ------eCCCcEEEEEcCCCce
Q psy12365 184 ------TSGGSVKIYLSKLPKL 199 (1324)
Q Consensus 184 ------~~dg~i~~~~~~~~~~ 199 (1324)
..++.+.+|+.....+
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCE
T ss_pred CEEeccCCCcEEEEEEcCCCeE
Confidence 2345788888655433
No 260
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.00 E-value=1.7e-08 Score=112.61 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=129.7
Q ss_pred HHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHH-------cCCH-------HHHHHHHHhCCChHHHHHHHHHH
Q psy12365 664 SWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAAL-------LGNH-------DTAQQRYLTSDIPTMALTLRRDL 729 (1324)
Q Consensus 664 ~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~~~~~~a~~~~~~~ 729 (1324)
+.|+..|.++ +..... ..+.++..|..+.. .|++ ++|...|.++.
T Consensus 33 ~~a~~~~~~a--------l~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl------------ 91 (308)
T 2ond_A 33 KRVMFAYEQC--------LLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI------------ 91 (308)
T ss_dssp HHHHHHHHHH--------HHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHH--------HHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH------------
Confidence 5677777765 222333 56677777777654 3554 45555443321
Q ss_pred hhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHH
Q psy12365 730 RQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGI 809 (1324)
Q Consensus 730 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 809 (1324)
. ..+++...++..+|..+...|++++|+..|++++...|. ... ..+..++.++.+.|++++|+
T Consensus 92 -------~----~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~-~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 92 -------S----TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPT-LVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp -------T----TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTH-HHHHHHHHHHHHHHCHHHHH
T ss_pred -------H----HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----Ccc-HHHHHHHHHHHHhcCHHHHH
Confidence 1 124555677788888888888888888888888887775 111 25566777777888888888
Q ss_pred HHHHhcCC-----hHHHHHHHHHHH-HccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC----
Q psy12365 810 RLAAESNS-----SVLKNECADILQ-QFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK---- 871 (1324)
Q Consensus 810 ~~~~~~~~-----~~~~~~l~~~~~-~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~---- 871 (1324)
++++++.. ..++...+.... ..|++++|...|+++.. +...+..+.+.|++++|..++++..
T Consensus 155 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 88777622 445544444432 26888888888887754 4445566667777777777665542
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 872 -----SATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 872 -----~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
...++..++.++...|++++|...+.++
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3347777888888889998888888773
No 261
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=7.4e-09 Score=130.65 Aligned_cols=180 Identities=9% Similarity=-0.068 Sum_probs=125.6
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCC-----cEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCe-------
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDS-----SVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSA------- 78 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~-----~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~------- 78 (1324)
|...+..++||| ||++|++++.++ .|++||..+....... ....+.+++|+|||+.|+++.. ++.
T Consensus 123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEEC-CCCSSCCSSS
T ss_pred CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEE-CCcccccccc
Confidence 444578999999 999999876543 8999998554333322 2223667999999999999886 544
Q ss_pred ---------EEEEEcCCCeE--EEEecC--CCCCceEEEEecCCCEEEE----------EEEEEeCCC------C--eEE
Q psy12365 79 ---------VNVWNTYTKKR--TIVDSG--LRDPLTCLVWCKQCSMLQL----------SVSIYNKHG------K--LID 127 (1324)
Q Consensus 79 ---------i~iw~~~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~----------~i~v~d~~g------~--~~~ 127 (1324)
|++|++.++.. ..++.. +...+..+.|||||++|++ .|.+||..+ . ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999987652 233333 4556789999999999876 588899764 2 344
Q ss_pred EEe-cCCcEEEEEEcCCCCEEEEEEcCC---CcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcE
Q psy12365 128 KIT-LPGLCIVMDWDSEGDLLGIISSNS---SAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSV 189 (1324)
Q Consensus 128 ~~~-~~~~i~~~~~~~~g~~l~~~~~~~---~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i 189 (1324)
.+. +...+.. .|+|+|..|++.+..+ +.|.+||+.+. ..+..+.|++++.++++...+|..
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 444 3334433 5899999888834332 36888887621 246778999887788888888865
Q ss_pred EEEEc
Q psy12365 190 KIYLS 194 (1324)
Q Consensus 190 ~~~~~ 194 (1324)
++|..
T Consensus 360 ~l~~~ 364 (710)
T 2xdw_A 360 TLQLH 364 (710)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 262
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=1.4e-08 Score=113.31 Aligned_cols=186 Identities=13% Similarity=0.075 Sum_probs=146.5
Q ss_pred CCchHHHHHHHHHHHH-------cCCH-------HHHHHHHHHhcc-cCCCCCCChhhHHhhhchHHHHHHhcCCHHHHH
Q psy12365 745 NQTPIISCDYAQQLEM-------TGQH-------AQALSFYQKSME-LATPDIQDPECQRKCKEGIARTSIRVGDFRLGI 809 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~-------~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 809 (1324)
+..+.++..+|..+.. .|++ ++|+..|++++. ..|+ ....+..++..+.+.|++++|.
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-------~~~~~~~~~~~~~~~~~~~~A~ 119 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-------NMLLYFAYADYEESRMKYEKVH 119 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHhcCCHHHHH
Confidence 5667888899988764 5886 999999999999 6886 4566777899999999999999
Q ss_pred HHHHhcCC-----hH-HHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHH-HHcCCHHHHHhhhhccC---
Q psy12365 810 RLAAESNS-----SV-LKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCY-IQLKNWTKIGQLLPHIK--- 871 (1324)
Q Consensus 810 ~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~-~~~~~~~~A~~~~~~~~--- 871 (1324)
++++++.. .. +|..+|.++...|++++|...|+++.. +...+.+. ...|++++|..++++..
T Consensus 120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998732 44 899999999999999999999999875 22222222 23799999999988764
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHH
Q psy12365 872 --SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 949 (1324)
Q Consensus 872 --~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai 949 (1324)
++.++..+|.++...|++++|...|+++.. .. .-.|+ ........++.++.+.|++++|.
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~---~l~p~---------~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT------SG---SLPPE---------KSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------SS---SSCGG---------GCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cc---CCCHH---------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 788999999999999999999999998431 10 00222 12334567788899999999999
Q ss_pred HHHHHc
Q psy12365 950 HFLILS 955 (1324)
Q Consensus 950 ~~~~~~ 955 (1324)
.++.++
T Consensus 262 ~~~~~a 267 (308)
T 2ond_A 262 KVEKRR 267 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888766
No 263
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=4.8e-09 Score=109.15 Aligned_cols=170 Identities=10% Similarity=-0.044 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHH----HHHHHhhh---cccchhhHHHHHHHHcCCHHHHHHHHHhCCC
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMV----WCLESLVE---EEEDTSILCGHVAALLGNHDTAQQRYLTSDI 718 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~----~~l~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~ 718 (1324)
+...+...|..++..|++++|+.+|.++...... ........ ..+.....+|.++...|++++|+..|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-- 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL-- 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 3455677888889999999999998876432111 00000000 00111123888888888888888876552
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHH
Q psy12365 719 PTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIART 798 (1324)
Q Consensus 719 ~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~ 798 (1324)
++ ..|+...++..+|.++...|++++|+..|++++..+|+ +..++..+|.+
T Consensus 81 -----------------l~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~ 131 (208)
T 3urz_A 81 -----------------LQ-----KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-------NLAANIFLGNY 131 (208)
T ss_dssp -----------------HH-----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHH
T ss_pred -----------------HH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 21 23455788899999999999999999999999999997 45667778888
Q ss_pred HHhcCC--HHHHHHHHHhcCC----hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 799 SIRVGD--FRLGIRLAAESNS----SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 799 ~~~~g~--~~~A~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
|...|+ .+.+...+++... ...++..|..+...|++++|+..|+++..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 876654 4455566655533 34667788888999999999999999876
No 264
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=3.8e-09 Score=114.81 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHH
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALT 724 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~ 724 (1324)
.++..+..+|..+++.|++++|+..|.++...... -.. ..+.++.+|.++...|++++|+..|.+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~-------- 78 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-----HEW-AADAQFYLARAYYQNKEYLLAASEYERF-------- 78 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-----STT-HHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----Ccc-hHHHHHHHHHHHHHhCcHHHHHHHHHHH--------
Confidence 45778899999999999999999999876432100 000 1456789999999999999999977552
Q ss_pred HHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH--------cCCHHHHHHHHHHhcccCCCCCCChhhHHhhh----
Q psy12365 725 LRRDLRQWREALALATSLGSNQTPIISCDYAQQLEM--------TGQHAQALSFYQKSMELATPDIQDPECQRKCK---- 792 (1324)
Q Consensus 725 ~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~---- 792 (1324)
++.. ...+..+.+++.+|.++.. .|++++|+..|++++...|+.. . .....
T Consensus 79 -----------l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~-~~~a~~~~~ 141 (261)
T 3qky_A 79 -----------IQIY--QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---L-VDDATQKIR 141 (261)
T ss_dssp -----------HHHC--TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---T-HHHHHHHHH
T ss_pred -----------HHHC--CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---h-HHHHHHHHH
Confidence 2110 1123456788999999999 9999999999999999999721 1 11111
Q ss_pred ----------chHHHHHHhcCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHc----------cCHHHHHHHHHHh
Q psy12365 793 ----------EGIARTSIRVGDFRLGIRLAAES----NS----SVLKNECADILQQF----------NKLNDAVTLYESA 844 (1324)
Q Consensus 793 ----------~~la~~~~~~g~~~~A~~~~~~~----~~----~~~~~~l~~~~~~~----------g~~~~A~~~y~~~ 844 (1324)
..+|.+|.+.|++++|+..++++ |+ ..++..+|.++..+ |++++|+..|+++
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 56788888888888888887776 32 46788888888866 7888888888776
Q ss_pred c
Q psy12365 845 G 845 (1324)
Q Consensus 845 ~ 845 (1324)
.
T Consensus 222 ~ 222 (261)
T 3qky_A 222 L 222 (261)
T ss_dssp H
T ss_pred H
Confidence 5
No 265
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.95 E-value=7.2e-09 Score=130.17 Aligned_cols=149 Identities=6% Similarity=-0.011 Sum_probs=111.4
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCC----------CcEEEEECCC------cEEEEEe--CCCCEEEEEEcCCCCEEEEEE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRD----------SSVSIYNKHG------KLIDKIT--LPGLCIVMDWDSEGDLLGIIS 73 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~----------~~v~v~~~~~------~~~~~~~--~~~~i~~i~~~~d~~~l~~~~ 73 (1324)
|...+..++||| ||+.|++++.+ ..|++||..+ .....+. +...+..++|||||+.|++++
T Consensus 128 ~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEE
Confidence 566788999999 99999998876 5899999866 4444443 345678899999999999887
Q ss_pred cCC-------CeEEEEEcC-CC---eEEEEecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEe-cCCc
Q psy12365 74 SNS-------SAVNVWNTY-TK---KRTIVDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKIT-LPGL 134 (1324)
Q Consensus 74 ~~d-------~~i~iw~~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~-~~~~ 134 (1324)
... ..|++||+. ++ +...+..++...+..+.|+|||+++++ .|.+||..+.....+. +...
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence 512 479999998 56 555555556778999999999996655 6788887543333333 2211
Q ss_pred ---------EEEEEEcCCCCEEEEEEcCCCcEEEeecc
Q psy12365 135 ---------CIVMDWDSEGDLLGIISSNSSAVNVWTLL 163 (1324)
Q Consensus 135 ---------i~~~~~~~~g~~l~~~~~~~~~i~iwd~~ 163 (1324)
+..++|+|++.++++ ++. +.++||.++
T Consensus 287 ~~~p~w~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~d 322 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANGLIAVV-HGK-GAAVLGILD 322 (662)
T ss_dssp SSCCCCSTTCCSEEECTTSCEEEE-EBS-SSCEEEEEE
T ss_pred ccCccccccCceEeEeCCCEEEEE-EEc-CccEEEEEE
Confidence 457889999999888 777 999999443
No 266
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.94 E-value=9.1e-09 Score=104.82 Aligned_cols=147 Identities=13% Similarity=0.051 Sum_probs=86.9
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..+..+|.++...|++++|...|.++... .+....++..+|..+...|++++|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 64 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA------------------------DAFDVDVALHLGIAYVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT------------------------TSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------CccChHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567788888999999999988876521 122344555556666666666666666
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
|++++...|. +...+..++.++...|++++|+++++++ ++ ..++..+|.++...|++++|..+|+++.
T Consensus 65 ~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 65 LERSLADAPD-------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 6666655554 2334444555666666666666555544 11 4555556666666666666666665553
Q ss_pred C--------HHHHHHHHHHcCCHHHHHhhhh
Q psy12365 846 N--------YEKAATCYIQLKNWTKIGQLLP 868 (1324)
Q Consensus 846 ~--------~~~~~~~~~~~~~~~~A~~~~~ 868 (1324)
. +..++.+|...|++++|...++
T Consensus 138 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 3344555566666666655554
No 267
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.94 E-value=6.1e-07 Score=102.16 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=91.4
Q ss_pred CCCEEEEEe------CCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEc---------CCCeEEEEEcCCCe
Q psy12365 25 TGELLATTG------RDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISS---------NSSAVNVWNTYTKK 88 (1324)
Q Consensus 25 ~g~~l~~~~------~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~---------~d~~i~iw~~~~~~ 88 (1324)
+++++.++. .|+.|.+||. +++.+..+...... .++|+|||++++++.. .++.|.+||..+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 667766654 3679999996 67877777743334 8999999999998862 25679999998877
Q ss_pred EEEEecC------CCCCceEEEEecCCCEEEE-------EEEEEeCC-CCeEEE-EecCCcEEEEEEcCCC-CEEEEEEc
Q psy12365 89 RTIVDSG------LRDPLTCLVWCKQCSMLQL-------SVSIYNKH-GKLIDK-ITLPGLCIVMDWDSEG-DLLGIISS 152 (1324)
Q Consensus 89 ~~~~~~~------~~~~v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~~~-~~~~~~i~~~~~~~~g-~~l~~~~~ 152 (1324)
....... +...+..+.|+|+|++|++ .|.+||.. ++.... +...+ ...+.+.|++ ..+++ .+
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~-~~ 170 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMT-IC 170 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEE-EE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEE-EC
Confidence 6655432 2345788999999999877 79999976 555555 44433 2335566765 34444 44
Q ss_pred CCCcEEEee
Q psy12365 153 NSSAVNVWT 161 (1324)
Q Consensus 153 ~~~~i~iwd 161 (1324)
.||.+.+|+
T Consensus 171 ~dg~~~~v~ 179 (361)
T 2oiz_A 171 GDGGLLTIN 179 (361)
T ss_dssp TTSSEEEEE
T ss_pred CCCcEEEEE
Confidence 555444433
No 268
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.91 E-value=3.4e-09 Score=123.70 Aligned_cols=176 Identities=12% Similarity=0.040 Sum_probs=122.1
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEE-eCC-CCEEE-------------------EEEcCCCCEEEEEE---
Q psy12365 18 YVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKI-TLP-GLCIV-------------------MDWDSEGDLLGIIS--- 73 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~-~~~-~~i~~-------------------i~~~~d~~~l~~~~--- 73 (1324)
.+.|+| ||+.|++++.++.|++|+..+.....+ ..+ +.... +.|+||++.+++..
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred cceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 478999 999999999999999999855433333 322 21222 35678887766543
Q ss_pred -cCCCeEEEEEcCCCeEEEEecCCCCCceEEEEec-CCCEEEE-----------EEEEEeCCCCeEEEEecC---CcEEE
Q psy12365 74 -SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCK-QCSMLQL-----------SVSIYNKHGKLIDKITLP---GLCIV 137 (1324)
Q Consensus 74 -~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~-----------~i~v~d~~g~~~~~~~~~---~~i~~ 137 (1324)
..+..|++||+.+++...+. .+...+..+.|+| ++..|+. .|.+||..+.....+... ..+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 22678999999988776554 4566789999999 7876665 377788776554444432 25778
Q ss_pred EEEcCCCCEEEEEEcC--C--CcEEEeecccC--------CCeeEEEEcC-CCCEEEEEeC----------------CCc
Q psy12365 138 MDWDSEGDLLGIISSN--S--SAVNVWTLLTY--------TLGERISWSD-DGQLLAVTTS----------------GGS 188 (1324)
Q Consensus 138 ~~~~~~g~~l~~~~~~--~--~~i~iwd~~~~--------~~i~~~~~s~-~~~~l~~~~~----------------dg~ 188 (1324)
+.|+|||+.|++.+.. . +.|.+||+.+. .... +.|+| ||+++++++. ++.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 9999999988772322 2 34999998632 2233 88999 9998887652 366
Q ss_pred EEEEEcCC
Q psy12365 189 VKIYLSKL 196 (1324)
Q Consensus 189 i~~~~~~~ 196 (1324)
|++|+...
T Consensus 322 i~~~d~~~ 329 (396)
T 3c5m_A 322 LYVLNTKA 329 (396)
T ss_dssp EEEEETTT
T ss_pred EEEEeccc
Confidence 88887654
No 269
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.91 E-value=6.7e-08 Score=105.58 Aligned_cols=182 Identities=9% Similarity=-0.066 Sum_probs=135.4
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC--CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR 89 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~--~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~ 89 (1324)
+...+.+++++| +|+++++.. ++.|.+||.++.....+.. ...+.+++++|+|..+++... ++.|.+|+..+...
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG-NNRVVKLAAGSKTQ 141 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG-GTEEEEECTTCCSC
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC-CCEEEEEECCCcee
Confidence 335688999999 999666555 8899999998876655542 256899999999986555444 78999997655443
Q ss_pred EEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 90 TIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
..........+.+++++|+|.++++ .|.+||..+....... ....+..++++++|.++++ ...++.|.+|+.
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~-~~~~~~v~~~~~ 220 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT-EHNTNQVVKLLA 220 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE-ETTTSCEEEECT
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEE-ECCCCcEEEEcC
Confidence 3222233345789999999987666 8999998865544332 2256889999999987777 777889999988
Q ss_pred ccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 163 LTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 163 ~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
... ..+..++++++|+++++...++.|.+|+...+
T Consensus 221 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 221 GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 721 35789999999998778788999999986543
No 270
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=6.6e-08 Score=102.01 Aligned_cols=177 Identities=10% Similarity=-0.062 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC----hH
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS----SV 819 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~----~~ 819 (1324)
+..++.+|..+...|+|++|+..|++++...|.. .....++..+|.+|.+.|++++|++.+++. |+ ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 3456777888888888888888888888877751 112345666788888888888888877765 22 34
Q ss_pred HHHHHHHHHHH------------------ccCHHHHHHHHHHhcCHH----HHHHHHHHcCCHHHHHhhhhccCCHHHHH
Q psy12365 820 LKNECADILQQ------------------FNKLNDAVTLYESAGNYE----KAATCYIQLKNWTKIGQLLPHIKSATTFI 877 (1324)
Q Consensus 820 ~~~~l~~~~~~------------------~g~~~~A~~~y~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 877 (1324)
+++.+|..+.. +|++++|+..|+++.+.. .+..++...+..... ......
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~--------~~~~~~ 151 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR--------LAKYEY 151 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH--------HHHHHH
Confidence 67777877765 567777777777765410 011111111000000 012335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 878 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 878 ~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
.+|..+...|++++|+..|.++. ... .+.+. ..++...+|.++.++|++++|++.+...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l------~~~---p~~~~----------~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGML------RDY---PDTQA----------TRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH------HHS---TTSHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH------HHC---cCCCc----------cHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999999999999998832 211 12221 1244678999999999999999988755
No 271
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=8.5e-09 Score=128.38 Aligned_cols=187 Identities=12% Similarity=-0.012 Sum_probs=139.9
Q ss_pred HHcCCHHHHHHHHHHhc--------ccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHH
Q psy12365 759 EMTGQHAQALSFYQKSM--------ELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECA 825 (1324)
Q Consensus 759 ~~~g~~~~A~~~y~~al--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~ 825 (1324)
...|++++|++.|++++ ..+|+ +...+..+|.++.+.|++++|++.++++ ++ ..+++.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 77899999999999999 77776 4556677899999999999999998877 32 78999999
Q ss_pred HHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHH
Q psy12365 826 DILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV 905 (1324)
Q Consensus 826 ~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a 905 (1324)
.++..+|++++|+..|+++.... -.++.++..+|.++...|++++ ++.|.++.
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~---------------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al----- 527 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTF---------------------PGELAPKLALAATAELAGNTDE-HKFYQTVW----- 527 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS---------------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHH-----
Confidence 99999999999999998876311 1146677889999999999999 99998843
Q ss_pred HHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCC-CCC
Q psy12365 906 VRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEP 984 (1324)
Q Consensus 906 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~ 984 (1324)
++ ...+..+++++|.++.++|++++|++.|.++ +. .|.
T Consensus 528 -~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~l~P~ 566 (681)
T 2pzi_A 528 -ST----------------NDGVISAAFGLARARSAEGDRVGAVRTLDEV------------------------PPTSRH 566 (681)
T ss_dssp -HH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS------------------------CTTSTT
T ss_pred -Hh----------------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhh------------------------cccCcc
Confidence 11 1234556788999999999999999999988 43 566
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHhh
Q psy12365 985 NPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVT 1025 (1324)
Q Consensus 985 ~~~~~~~la~~~~~~g~~~~A~~~y~~~g~~~~A~~~~~~~ 1025 (1324)
...++..+|..+...+...+|. .+++.+|++.+.+.
T Consensus 567 ~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRSTSEVT-----EEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHTC-------CC-----HHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHccCCCCCCC-----HHHHHHHHHHHhhC
Confidence 6788888888775544422221 13345555555554
No 272
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=5.1e-09 Score=130.38 Aligned_cols=156 Identities=10% Similarity=-0.048 Sum_probs=122.7
Q ss_pred HhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHH
Q psy12365 658 LQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALA 737 (1324)
Q Consensus 658 l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~ 737 (1324)
+..+++++|+..|.++.+............ ..+.++.+|.++..+|++++|+..|.++ ++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a-------------------l~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDL-------------------AE 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHH-------------------HH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHH-------------------hc
Confidence 889999999999887641100000011122 4567789999999999999999977553 22
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc--
Q psy12365 738 LATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES-- 815 (1324)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-- 815 (1324)
. .++...++..+|.++...|+|++|++.|++++..+|+ +...+.++|.++.+.|++++ ++.++++
T Consensus 462 ~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 462 R-----VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-------ELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp H-----HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred c-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 1 2455788899999999999999999999999999997 45667789999999999999 8888776
Q ss_pred --CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 816 --NS-SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 816 --~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
++ ..+++.+|.++..+|++++|+..|+++..
T Consensus 529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 22 78899999999999999999999999875
No 273
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.85 E-value=2.8e-08 Score=124.98 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=123.1
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe-----CCCcEEEEECCCcEEE-EEeCC-CCEEEEEEcCCCCEEEEEEcCCCe-----
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTG-----RDSSVSIYNKHGKLID-KITLP-GLCIVMDWDSEGDLLGIISSNSSA----- 78 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~-----~~~~v~v~~~~~~~~~-~~~~~-~~i~~i~~~~d~~~l~~~~~~d~~----- 78 (1324)
+|...+..++||| ||++||.+. .+..|++||+.+.... .-... .....++|+|||+.|++++. +..
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~-d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWL-PTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEEC-CCCTTSCG
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEe-cCCCCCcc
Confidence 4555788999999 999999653 3468999998543322 11111 11267899999999999887 554
Q ss_pred --------EEEEEcCCCe--EEEEec--CCCCCceEEEEecCCCEEEE---------EEEEEeCC-CCeEEEEecCCcEE
Q psy12365 79 --------VNVWNTYTKK--RTIVDS--GLRDPLTCLVWCKQCSMLQL---------SVSIYNKH-GKLIDKITLPGLCI 136 (1324)
Q Consensus 79 --------i~iw~~~~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~-g~~~~~~~~~~~i~ 136 (1324)
|++|++.++. ...++. .+...+..+.|||||++|++ .|++|+.. +.......+...+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 9999998775 223333 34567889999999998876 46667654 33333333455566
Q ss_pred EEEEcCCCCEEEEEEc---CCCcEEEeecccC--------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 137 VMDWDSEGDLLGIISS---NSSAVNVWTLLTY--------------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~---~~~~i~iwd~~~~--------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
...| ++|. +++.+. .++.|.+||+.+. ..+..+.|+ ++.++++...+|..++|..+
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 6666 6677 555244 3578999987521 236677887 66778888889988888754
No 274
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.84 E-value=2.6e-09 Score=104.22 Aligned_cols=85 Identities=8% Similarity=-0.008 Sum_probs=56.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHH
Q psy12365 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADIL 828 (1324)
Q Consensus 754 ~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~ 828 (1324)
+|.++...|++++|++.|++++...|+ ....+..+|.+|.+.|++++|++.++++ |+ ..++..+|.++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455666667777777777777766664 3445556777777777777777777665 22 66777777777
Q ss_pred HHccCHHHHHHHHHHhc
Q psy12365 829 QQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 829 ~~~g~~~~A~~~y~~~~ 845 (1324)
..+|++++|+..|+++.
T Consensus 76 ~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHH
Confidence 77777777777777665
No 275
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.84 E-value=1.3e-07 Score=102.63 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=131.6
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCcEEEEEeCC--CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCC-CCCc
Q psy12365 25 TGELLATTGRDSSVSIYNK-HGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGL-RDPL 100 (1324)
Q Consensus 25 ~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~--~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~v 100 (1324)
.+++|++++.++.|.+||. +|+.+.++... ..+.++.++|+|+.++ +. ++.|..||.. ++....+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~-~~~V~~~d~~-G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SY-SKGAKMITRD-GRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--EC-BSEEEEECTT-SCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eC-CCCEEEECCC-CCEEEEEcCCCCccc
Confidence 4688999999999999999 99999988843 3688999999999888 34 6889999994 5544444433 3468
Q ss_pred eEEEEecCCCEEEE------EEEEEeCCCCeEEEEecCC-------cEEEEEEcCCCCEEEEEEcCCCcEEEeeccc---
Q psy12365 101 TCLVWCKQCSMLQL------SVSIYNKHGKLIDKITLPG-------LCIVMDWDSEGDLLGIISSNSSAVNVWTLLT--- 164 (1324)
Q Consensus 101 ~~~~~s~~~~~l~~------~i~v~d~~g~~~~~~~~~~-------~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~--- 164 (1324)
.++.+.|+|+.+++ .+..+|.+|+.+.++.... ....+...++|+++++ ...++.|..||.+-
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d~~G~~~ 158 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVREIAPNGQLL 158 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEEECTTSCEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEEECCCCCEE
Confidence 88999999999887 5777788899888776322 2345678899999998 88899999998871
Q ss_pred -----CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 165 -----YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 165 -----~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
...+..+...++|+++++++.++.|..++...
T Consensus 159 w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 159 NSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp EEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred EEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 14566788889999998888888888888763
No 276
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=2.1e-08 Score=104.29 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhch----------------HHHHHHhcCCHHHHHHHH
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEG----------------IARTSIRVGDFRLGIRLA 812 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~ 812 (1324)
......|..+...|+|++|+..|++++..+|+ +...+.. +|.+|.+.|++++|++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34567788899999999999999999999986 4445555 899999999999999999
Q ss_pred Hhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCC--HHHHHhhhhccC--CH--
Q psy12365 813 AES----NS-SVLKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKN--WTKIGQLLPHIK--SA-- 873 (1324)
Q Consensus 813 ~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~--~~~A~~~~~~~~--~~-- 873 (1324)
++. |+ ..++..+|.++..+|++++|+..|+++.. +..++.+|...++ ..++...+++.. .+
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh
Confidence 887 33 88999999999999999999999999865 5556666655543 445555555554 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhC
Q psy12365 874 TTFIQYAKAKEAMGSYRESVGAYERAED 901 (1324)
Q Consensus 874 ~~~~~~a~~~~~~g~~~~A~~~y~~a~~ 901 (1324)
..++..|..+...|+|++|+..|+++.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2456678888899999999999999654
No 277
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.83 E-value=1.4e-07 Score=107.51 Aligned_cols=177 Identities=12% Similarity=0.181 Sum_probs=117.6
Q ss_pred EEEEecCCCCEEEEEeC----------CCcEEEEEC-CCcEEEEEeC-------CCCEEEEEEcCCCCEEEEEEcC-CCe
Q psy12365 18 YVCWQRRTGELLATTGR----------DSSVSIYNK-HGKLIDKITL-------PGLCIVMDWDSEGDLLGIISSN-SSA 78 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~~----------~~~v~v~~~-~~~~~~~~~~-------~~~i~~i~~~~d~~~l~~~~~~-d~~ 78 (1324)
.++|+| ||+++.+++. ++.|.+||. +++.+..+.. ......++++|||++++++... ++.
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence 899999 9999998862 567999997 5677777762 1346789999999999998753 589
Q ss_pred EEEEEcCCCeEEEE-ecCCC---------CCceEEEEecCCCEEEE----------------------------------
Q psy12365 79 VNVWNTYTKKRTIV-DSGLR---------DPLTCLVWCKQCSMLQL---------------------------------- 114 (1324)
Q Consensus 79 i~iw~~~~~~~~~~-~~~~~---------~~v~~~~~s~~~~~l~~---------------------------------- 114 (1324)
|.+||..+++.... ..... +....++++++|..+.+
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD 212 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS
T ss_pred EEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC
Confidence 99999998877655 32100 01122334444443322
Q ss_pred ---------EEEEEeCCCCe---EEEEec-----------CCcEEEEEEcCCCCEEEEEEc----------CCCcEEEee
Q psy12365 115 ---------SVSIYNKHGKL---IDKITL-----------PGLCIVMDWDSEGDLLGIISS----------NSSAVNVWT 161 (1324)
Q Consensus 115 ---------~i~v~d~~g~~---~~~~~~-----------~~~i~~~~~~~~g~~l~~~~~----------~~~~i~iwd 161 (1324)
.+.++|..+.. ...+.. +.....++++|+|..+.+... .++.|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 23444432111 011110 011112688999888776232 135799999
Q ss_pred cccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 162 LLTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 162 ~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
..+. . ++.+.|+|||++|+++.. +.|.+||....
T Consensus 293 ~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 293 TKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 8743 5 899999999999998886 99999998765
No 278
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=7.4e-09 Score=100.98 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=101.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhH
Q psy12365 653 FAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQW 732 (1324)
Q Consensus 653 l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~ 732 (1324)
||..+...|+++.|+..++++...... .+..++.+|.++...|++++|++.|.++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---------~~~~~~~la~~y~~~~~~~~A~~~~~~a---------------- 57 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ---------KSIKGFYFAKLYYEAKEYDLAKKYICTY---------------- 57 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH---------HHTTHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------
Confidence 566777778888888887766443221 2445678889999999999998877553
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHH-
Q psy12365 733 REALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRL- 811 (1324)
Q Consensus 733 ~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~- 811 (1324)
++ ..++.+.++..+|.++...|++++|+..|+++++.+|. +...+..+|.+|.+.|++++|.+.
T Consensus 58 ---l~-----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 58 ---IN-----VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-------QKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp ---HH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred ---HH-----hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 22 23556788899999999999999999999999999887 455667788888888888766553
Q ss_pred HHhc----CC-hHHHHHHHHHHHHccC
Q psy12365 812 AAES----NS-SVLKNECADILQQFNK 833 (1324)
Q Consensus 812 ~~~~----~~-~~~~~~l~~~~~~~g~ 833 (1324)
++++ |+ +.++...+.++..+|+
T Consensus 123 ~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 123 VERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 4443 33 7777778888877775
No 279
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.7e-07 Score=103.53 Aligned_cols=180 Identities=12% Similarity=-0.014 Sum_probs=127.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhH--HhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------h
Q psy12365 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQ--RKCKEGIARTSIRVGDFRLGIRLAAESNS-----------S 818 (1324)
Q Consensus 752 ~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~ 818 (1324)
...+..+...|+|++|+..|++++...+. .+... ...+.+++..+...|++++|++.++++.. .
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34467778889999999999999887664 21211 23444688888888999999998887621 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 819 VLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 898 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 898 (1324)
.+++.+|.+|..+|++++|+.+|+++.+... ..... ......++..+|.+|..+|+|++|+++|.+
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~------~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLE------ALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------hcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3789999999999999999999988864211 11000 001245778899999999999999999999
Q ss_pred hhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCC-HHHHHHHHHHcCCHHHHHHHHHhccc
Q psy12365 899 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD-FGAAIHFLILSKCYQDAFNLSQQHKK 970 (1324)
Q Consensus 899 a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~-~~~Ai~~~~~~~~~~~A~~l~~~~~~ 970 (1324)
|+.+..+....... ..++..+|.++.++|+ +++|+++|.++ +.+++..+.
T Consensus 222 ------al~~~~~~~~~~~~----------~~~~~~lg~~~~~~g~~~~~A~~~~~~A------l~i~~~~~~ 272 (293)
T 3u3w_A 222 ------AIEISCRINSMALI----------GQLYYQRGECLRKLEYEEAEIEDAYKKA------SFFFDILEM 272 (293)
T ss_dssp ------HHHHHHHTTBCTTH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHH------HHHHHHTTC
T ss_pred ------HHHHHHHcCcHHHH----------HHHHHHHHHHHHHhCCcHHHHHHHHHHH------HHHHHHhCC
Confidence 44455432222211 3446789999999994 79999988765 555554443
No 280
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.78 E-value=5.7e-08 Score=110.01 Aligned_cols=177 Identities=13% Similarity=0.035 Sum_probs=131.5
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIV 92 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~ 92 (1324)
..|.++.|+| ++..++..+.++.++.| .++....+. +...+.+++|+|+|+.+++... ++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVF-EGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETT-TCEEEEECTTTCCEEEE
T ss_pred cccceeeecC-CccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECC-CCEEEEEeCCCCcEEEE
Confidence 3477889999 88887777778889999 455566665 5567899999999996666655 88999999988877665
Q ss_pred ecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCeEEE-Ee---cCCcEEEEEEcCCCCEEEEEEcC------
Q psy12365 93 DSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKLIDK-IT---LPGLCIVMDWDSEGDLLGIISSN------ 153 (1324)
Q Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~~~~-~~---~~~~i~~~~~~~~g~~l~~~~~~------ 153 (1324)
...+...+.+++|+|+|.++++ .|.+||.++..... +. ....+..+.++|+|.++++ ...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-DFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE-ECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE-eccccccCC
Confidence 5456678999999999987766 38889987654442 22 2346889999999988776 443
Q ss_pred CCcEEEeecccC---------CCeeEEEEcCCCCEEEEE-eCCCcEEEEEcC
Q psy12365 154 SSAVNVWTLLTY---------TLGERISWSDDGQLLAVT-TSGGSVKIYLSK 195 (1324)
Q Consensus 154 ~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~-~~dg~i~~~~~~ 195 (1324)
.+.|..++..+. ..+..+.|+|||+.|+++ +.++.|.+|+..
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 245555655421 356789999999977655 457889998874
No 281
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=4.1e-08 Score=107.93 Aligned_cols=148 Identities=13% Similarity=0.009 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~ 819 (1324)
+.....+..+|..+...|++++|+..|++++..+|+ +...+.++|.++.+.|++++|++.++++.. ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 344566778888888888888888888888888887 456677788888888888888888888743 33
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-------CHHHHHHHHHHHH
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-------SATTFIQYAKAKE 884 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~a~~~~ 884 (1324)
.....+..+...++.++|+..|+++.. +..++.+|...|++++|+..+++.. +..++..++.++.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 344455567777888888888887753 5566788888888888888777654 2668888999999
Q ss_pred HcCCHHHHHHHHHHh
Q psy12365 885 AMGSYRESVGAYERA 899 (1324)
Q Consensus 885 ~~g~~~~A~~~y~~a 899 (1324)
..|+.++|+..|+++
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 999999999999884
No 282
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=6.1e-07 Score=99.09 Aligned_cols=179 Identities=6% Similarity=-0.105 Sum_probs=123.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy12365 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQF 831 (1324)
Q Consensus 752 ~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~ 831 (1324)
...+..+...|+|++|++.|++++...+. ...... . ...++.+|.++...
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-----~~~~~~---~----------------------~~~~~~~~~~~~~~ 128 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY-----HPEFQQ---F----------------------LQWQYYVAAYVLKK 128 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCC-----CHHHHH---H----------------------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccC-----ChhHHH---H----------------------HHHHHHHHHHHhcC
Confidence 45677788899999999999999887664 111100 0 11335578888899
Q ss_pred cCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHH
Q psy12365 832 NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 907 (1324)
Q Consensus 832 g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~ 907 (1324)
|++++|+.+|+++... ..+.. ...++..+|.+|...|++++|+.+|.+ |+.
T Consensus 129 ~~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~k------al~ 183 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQ-------------------QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ------ILK 183 (293)
T ss_dssp SCHHHHHHHHHHHHTT-------------------CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHH
T ss_pred CCHHHHHHHHHHHHHH-------------------HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHH
Confidence 9999999988776531 11111 134677889999999999999999999 444
Q ss_pred HHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHH
Q psy12365 908 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPV 987 (1324)
Q Consensus 908 ~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~ 987 (1324)
+......++.... .++.++|.+|..+|+|++|+.+|.++ +.+....+. ......
T Consensus 184 ~~~~~~~~~~~~~---------~~~~nlg~~y~~~~~y~~Al~~~~ka------l~~~~~~~~-----------~~~~~~ 237 (293)
T 2qfc_A 184 QLEALHDNEEFDV---------KVRYNHAKALYLDSRYEESLYQVNKA------IEISCRINS-----------MALIGQ 237 (293)
T ss_dssp HHHHSCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTB-----------CSSHHH
T ss_pred HHHhcCccccchH---------HHHHhHHHHHHHHhhHHHHHHHHHHH------HHHHHhcCc-----------HHHHHH
Confidence 4443333333221 34679999999999999999999877 222221111 112367
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHH
Q psy12365 988 ELKRLAIHFEEDKDMFRA-AQYYYH 1011 (1324)
Q Consensus 988 ~~~~la~~~~~~g~~~~A-~~~y~~ 1011 (1324)
++..+|.+|...|++++| ..+|.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 889999999999998888 555543
No 283
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.6e-08 Score=114.89 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCC----------ChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC--
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ----------DPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-- 817 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 817 (1324)
.....|+.+...|+|++|++.|.+++...+.... .......+...++.+|...|+|++|++++.++..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4456677788899999999999999998876210 0112234466789999999999999988877632
Q ss_pred ---------hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCC
Q psy12365 818 ---------SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGS 888 (1324)
Q Consensus 818 ---------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~ 888 (1324)
..+...+|.++...|++++|..+|+++..+.. ..+ .......++..+|.++...|+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~---------~~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK------REK---------RVFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH------HSS---------CCSSHHHHHHHHHHHHHHHTC
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------HhC---------ccHHHHHHHHHHHHHHHHccC
Confidence 23556678888888888888888877653211 111 111235677889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhc
Q psy12365 889 YRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 968 (1324)
Q Consensus 889 ~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~ 968 (1324)
|++|+..+.+ +........+.+..+ +....++.+|...|+|++|..+|.++.....+
T Consensus 151 ~~~A~~~l~~------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------- 207 (434)
T 4b4t_Q 151 YKDSLALIND------LLREFKKLDDKPSLV----------DVHLLESKVYHKLRNLAKSKASLTAARTAANS------- 207 (434)
T ss_dssp HHHHHHHHHH------HHHHHTTSSCSTHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHH------HHHHHHhcccchhHH----------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-------
Confidence 9999999988 334444333333322 34678999999999999999999877222111
Q ss_pred cchhHhhhhccCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 969 KKLHEFGKFLLEEDE--PNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 969 ~~~~~~~~~l~l~~~--~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
...+ .....+..+|.++...++|.+|..+|.++
T Consensus 208 -----------~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 208 -----------IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111 12356677888888888888888877654
No 284
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.76 E-value=1.4e-06 Score=104.43 Aligned_cols=182 Identities=9% Similarity=-0.010 Sum_probs=133.0
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEC---CCcEEEEEeCCCCEEEEEEc----CCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNK---HGKLIDKITLPGLCIVMDWD----SEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~---~~~~~~~~~~~~~i~~i~~~----~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+..+.||| ||+++.+++.++.|.+||. +++.+.++........++|+ |||++++++...++.|.|+|..+
T Consensus 197 ~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 4567899999 9999999999999999998 67788888766668899999 69999998887679999999988
Q ss_pred CeEEEEecC----------CCC-CceEEEEecCCCEEEE------EEEEEeCCCC---eEEEEecCCcEEEEEEcCCCCE
Q psy12365 87 KKRTIVDSG----------LRD-PLTCLVWCKQCSMLQL------SVSIYNKHGK---LIDKITLPGLCIVMDWDSEGDL 146 (1324)
Q Consensus 87 ~~~~~~~~~----------~~~-~v~~~~~s~~~~~l~~------~i~v~d~~g~---~~~~~~~~~~i~~~~~~~~g~~ 146 (1324)
.+....... |.. .+..+..++++..+++ .|.++|.... .+..+........+.|+|+|++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 877665431 112 5778889998776665 7888887532 2333444556778999999998
Q ss_pred EEEEEcCCCcEEEeecccCCCe-------------eEEE-EcCCCCEEEEEe--CCCcEEEEEcCC
Q psy12365 147 LGIISSNSSAVNVWTLLTYTLG-------------ERIS-WSDDGQLLAVTT--SGGSVKIYLSKL 196 (1324)
Q Consensus 147 l~~~~~~~~~i~iwd~~~~~~i-------------~~~~-~s~~~~~l~~~~--~dg~i~~~~~~~ 196 (1324)
+++.+..++.|.++|..+...+ ..+. ++|++..+.+.+ .++.|.+++...
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 8774667889999998843111 1222 366644444333 346777777653
No 285
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=6.3e-08 Score=100.90 Aligned_cols=146 Identities=14% Similarity=0.051 Sum_probs=111.2
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC----CHHHHHHHHHhcC---C
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG----DFRLGIRLAAESN---S 817 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~---~ 817 (1324)
.+.+..+..+|.++...|++++|+.+|+++.+... ..++..|+.+|.. + ++++|++++++.. .
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~ 84 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD---------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGS 84 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCC
Confidence 35567788888888888888888888888876533 4555667888877 6 8888888888773 2
Q ss_pred hHHHHHHHHHHHH----ccCHHHHHHHHHHhcCH----------HHHHHHHHH----cCCHHHHHhhhhcc----CCHHH
Q psy12365 818 SVLKNECADILQQ----FNKLNDAVTLYESAGNY----------EKAATCYIQ----LKNWTKIGQLLPHI----KSATT 875 (1324)
Q Consensus 818 ~~~~~~l~~~~~~----~g~~~~A~~~y~~~~~~----------~~~~~~~~~----~~~~~~A~~~~~~~----~~~~~ 875 (1324)
..+++.+|.+|.. .+++++|+.+|+++.+. ..++.+|.. .+++++|+.++++. .++..
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a 164 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYA 164 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 7788888888887 78888888888887652 234566776 67788888877765 26678
Q ss_pred HHHHHHHHHHc-C-----CHHHHHHHHHHhh
Q psy12365 876 FIQYAKAKEAM-G-----SYRESVGAYERAE 900 (1324)
Q Consensus 876 ~~~~a~~~~~~-g-----~~~~A~~~y~~a~ 900 (1324)
...+|.+|... | ++++|+..|+++-
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 88889988764 3 8999999998854
No 286
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=6.4e-08 Score=106.37 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTL 725 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~ 725 (1324)
+...+..+|..++..|+++.|+..|+++. ..-.. ..+.+..+|.++...|++++|+..|.++...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----- 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAW--------QLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD----- 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH--------HhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----
Confidence 45678899999999999999999988753 22223 45677899999999999999999998875211
Q ss_pred HHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH
Q psy12365 726 RRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805 (1324)
Q Consensus 726 ~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 805 (1324)
++........+..+...++.++|+..|++++..+|+ +...+..+|.++...|++
T Consensus 182 -------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 182 -------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRN 235 (287)
T ss_dssp -------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCH
T ss_pred -------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccH
Confidence 122222333344455556666667777777766665 344555566667777777
Q ss_pred HHHHHHHHhc----CC---hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 806 RLGIRLAAES----NS---SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 806 ~~A~~~~~~~----~~---~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
++|++.++++ ++ ..++..++.++...|+.++|...|+++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7776666554 21 4577888888888888888888887764
No 287
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=3.1e-07 Score=96.81 Aligned_cols=168 Identities=11% Similarity=-0.038 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhh--cccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVE--EEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMAL 723 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~ 723 (1324)
++..+..+|..++..|++++|+..|.++.. .... ...+.++.+|.++...|++++|+..|.+..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----- 69 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDN--------RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR----- 69 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Confidence 456788899999999999999999887632 1111 0134678899999999999999998866320
Q ss_pred HHHHHHhhHHHHHHHHHhcCCC--CchHHHHHHH------------------HHHHHcCCHHHHHHHHHHhcccCCCCCC
Q psy12365 724 TLRRDLRQWREALALATSLGSN--QTPIISCDYA------------------QQLEMTGQHAQALSFYQKSMELATPDIQ 783 (1324)
Q Consensus 724 ~~~~~~~~~~~Al~~~~~~~~~--~~~~~~~~~~------------------~~~~~~g~~~~A~~~y~~al~~~~~~~~ 783 (1324)
..|. ..+.+++.+| ..+...|++++|+..|++++...|+...
T Consensus 70 ------------------~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 70 ------------------LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp ------------------HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred ------------------HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 1111 1122333444 4444578999999999999999997211
Q ss_pred Chhh----------HHhhhchHHHHHHhcCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHccCHHHHHHHHHHh
Q psy12365 784 DPEC----------QRKCKEGIARTSIRVGDFRLGIRLAAES----NS----SVLKNECADILQQFNKLNDAVTLYESA 844 (1324)
Q Consensus 784 ~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~A~~~y~~~ 844 (1324)
.... .......+|.+|.+.|++++|+..++++ |+ .+++..+|.++..+|++++|...|+++
T Consensus 132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 132 TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0000 0001123556666666666666665554 22 245666666666666666666666554
No 288
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.73 E-value=2.8e-05 Score=88.26 Aligned_cols=110 Identities=13% Similarity=-0.003 Sum_probs=74.2
Q ss_pred EEecCCCCEEEEEeC--CC---cEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEc---------CCCeEEEEEc
Q psy12365 20 CWQRRTGELLATTGR--DS---SVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISS---------NSSAVNVWNT 84 (1324)
Q Consensus 20 ~~sp~~g~~l~~~~~--~~---~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~---------~d~~i~iw~~ 84 (1324)
...| +++++.++.. .. .|.++|. +++.+..+...... .+.+||||+++.++.. .++.|.+||.
T Consensus 27 ~~~~-~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCC-CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3446 8888776653 22 7899997 67777777643334 9999999999998862 2578999999
Q ss_pred CCCeEEEEecCC-------CCCceEEEEecCCCEEEE-------EEEEEeCC-CCeEEE-EecC
Q psy12365 85 YTKKRTIVDSGL-------RDPLTCLVWCKQCSMLQL-------SVSIYNKH-GKLIDK-ITLP 132 (1324)
Q Consensus 85 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~~~-~~~~ 132 (1324)
.+.+......-. ......+.|+|||++|.+ .|.++| . ++.... +..+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~ 167 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP 167 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC
Confidence 877655443211 123457888888888776 577777 5 455555 4433
No 289
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.72 E-value=2e-07 Score=104.69 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=115.9
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECC------------CcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKH------------GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNV 81 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~------------~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~i 81 (1324)
..+..+++++ .+.++++++.++ +.+|+.+ -+....+.+++ |+.++| |+..|+++ . ++.|++
T Consensus 38 ~~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~-~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T-RNALYS 110 (388)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E-SSEEEE
T ss_pred ccccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c-CCcEEE
Confidence 3689999999 999999999875 6669842 12223445777 999999 99999998 5 899999
Q ss_pred EEcCCCeEEEEecCCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 82 WNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
||+.+.........|...+..+.+.+.. ++++ .|.+||+....... +...|.+++|||+| ++. +..||++
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~v-g~~dg~i 184 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAV-LLKDRSF 184 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEE-EETTSCE
T ss_pred EEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEE-EEcCCcE
Confidence 9987654444445677778887777653 3333 99999987333222 34579999999999 556 8889999
Q ss_pred EEeecccC---------------------CCeeEEEEcCCCCEEEEEe
Q psy12365 158 NVWTLLTY---------------------TLGERISWSDDGQLLAVTT 184 (1324)
Q Consensus 158 ~iwd~~~~---------------------~~i~~~~~s~~~~~l~~~~ 184 (1324)
++|+.... ..|.++.|.+++.++++-+
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99966511 3378889998888877543
No 290
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=1.3e-07 Score=98.49 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=127.3
Q ss_pred hCCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcC----CHHHHHHHHHhCCCh
Q psy12365 644 LNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLG----NHDTAQQRYLTSDIP 719 (1324)
Q Consensus 644 ~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~~~~~ 719 (1324)
..++..+..+|..+...+++++|+.+|.++-+. . .++....+|.++.. + ++++|..+|.++.
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-- 80 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------G-DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-- 80 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------T-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------C-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--
Confidence 377888999999999999999999999876321 1 35566778888777 6 7888888776531
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchH
Q psy12365 720 TMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEM----TGQHAQALSFYQKSMELATPDIQDPECQRKCKEGI 795 (1324)
Q Consensus 720 ~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l 795 (1324)
..+.+..+..+|.+|.. .+++++|+.+|+++.+..+. .....++..|
T Consensus 81 ------------------------~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-----~~~~~a~~~L 131 (212)
T 3rjv_A 81 ------------------------EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-----DAAVDAQMLL 131 (212)
T ss_dssp ------------------------HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-----HHHHHHHHHH
T ss_pred ------------------------HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-----cchHHHHHHH
Confidence 13456777899999987 89999999999999988773 2346677789
Q ss_pred HHHHHh----cCCHHHHHHHHHhc----CChHHHHHHHHHHHHc-c-----CHHHHHHHHHHhcC
Q psy12365 796 ARTSIR----VGDFRLGIRLAAES----NSSVLKNECADILQQF-N-----KLNDAVTLYESAGN 846 (1324)
Q Consensus 796 a~~~~~----~g~~~~A~~~~~~~----~~~~~~~~l~~~~~~~-g-----~~~~A~~~y~~~~~ 846 (1324)
+.+|.. .+++++|++++++. ....+.+.+|.+|... | ++++|..+|+++.+
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 999998 88999999999887 2377899999999764 3 89999999998764
No 291
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.72 E-value=2.5e-06 Score=94.29 Aligned_cols=181 Identities=11% Similarity=0.118 Sum_probs=128.9
Q ss_pred CCCCeeEEEEecCCCCEE-EEEeCCCcEEEEECCCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 12 HGPGDVYVCWQRRTGELL-ATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l-~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
+..-..+..|+| ++..| .+...++.|..||..+.....+..+..+.+++|+|+|++++ +. ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~--~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI--GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE--TTEEEEEETTTTEEE
T ss_pred CCccccCCeEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE--CCeEEEEECCCCcEE
Confidence 334566899999 65554 44456789999998766566666778899999999999544 43 568999999888765
Q ss_pred EEecCC----CCCceEEEEecCCCEEEEE--------------EEEEe--CCCCeEEEEecCCcEEEEEEcCCCCEEEEE
Q psy12365 91 IVDSGL----RDPLTCLVWCKQCSMLQLS--------------VSIYN--KHGKLIDKITLPGLCIVMDWDSEGDLLGII 150 (1324)
Q Consensus 91 ~~~~~~----~~~v~~~~~s~~~~~l~~~--------------i~v~d--~~g~~~~~~~~~~~i~~~~~~~~g~~l~~~ 150 (1324)
.+.... ...+..+.++|+|.+++++ ..+|. .+|+.............++|+|||+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 443322 2347889999999976651 24554 445554433344456789999999977664
Q ss_pred EcCCCcEEEeecc--cC---------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 151 SSNSSAVNVWTLL--TY---------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 151 ~~~~~~i~iwd~~--~~---------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
.+.++.|..|+.+ +. ..+..++++++|.+.++...++.|..|+...
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 6778889999863 10 3467789999998777766778899988753
No 292
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=7.1e-08 Score=97.19 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHH
Q psy12365 649 TWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRD 728 (1324)
Q Consensus 649 ~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~ 728 (1324)
.+..+|..++..|+++.|+..|+++... -.. ..+.+..+|.++...|++++|+..|.++....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-------- 70 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--------LQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY-------- 70 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--------
Confidence 4567888899999999999998876432 112 45667889999999999999999998865321
Q ss_pred HhhHHHHHHHHHhcCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHH
Q psy12365 729 LRQWREALALATSLGSNQTPIISCDYAQQ-LEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRL 807 (1324)
Q Consensus 729 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 807 (1324)
| .+.....++.+ +...++..+|+..|++++..+|+ +...+..++.++...|++++
T Consensus 71 ---------------p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-------~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 71 ---------------Q--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-------NFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp ---------------C--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------C--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcccHHH
Confidence 1 11111111211 11112233466777777777665 34555556777777777777
Q ss_pred HHHHHHhcC----C---hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 808 GIRLAAESN----S---SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 808 A~~~~~~~~----~---~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
|+..+++.. + ..++..+|.++..+|+.++|+..|+++.
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 777666541 1 3477888888888888888888888764
No 293
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=3.2e-08 Score=92.89 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=85.5
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-h
Q psy12365 744 SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-S 818 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~ 818 (1324)
.|..++.+...|..+...|+|++|++.|++++..+|. +...+..+|.+|.++|++++|++.++++ ++ .
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 3455677889999999999999999999999999997 5677788999999999999999998887 22 8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 819 VLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
.++..+|.++..+|++++|+..|+++.+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999998864
No 294
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.71 E-value=4.5e-07 Score=98.92 Aligned_cols=178 Identities=11% Similarity=-0.018 Sum_probs=125.8
Q ss_pred CeeEEEEecCCCCEEE-EEeCCCcEEEEECCCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 15 GDVYVCWQRRTGELLA-TTGRDSSVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~-~~~~~~~v~v~~~~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
.+.+++++| +|++++ +.+.++.|.+|+..+.....+. ....+.+++++++|. +.++.. ++.|.+||..++....
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 688999999 999776 4367789999998654443333 224678899999998 445555 7899999988765543
Q ss_pred EecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeeccc
Q psy12365 92 VDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLT 164 (1324)
Q Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~ 164 (1324)
........+..++++|+|.++++ .|.+|+.......... ....+..++++|+|+++++ ...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT-DTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEE-EGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEE-ECCCCEEEEEecCC
Confidence 32233356899999999987766 7888875433222222 2235678999999997766 66778999999872
Q ss_pred C----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 165 Y----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 165 ~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
. ..+..++++++|.++++...++.|.+|+...
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 1 4578899999997666666678899888654
No 295
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=8.1e-08 Score=106.23 Aligned_cols=174 Identities=7% Similarity=-0.014 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHH
Q psy12365 648 ETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRR 727 (1324)
Q Consensus 648 ~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~ 727 (1324)
..+...+..++..|++++|+..|.+..+.... ...... .......+|.++...|++++|+..|.++
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------- 141 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQ-FLQWQYYVAAYVLKKVDYEYCILELKKL----------- 141 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHH-----------
Confidence 34567788899999999999998755321100 000000 1122356777888888888888876542
Q ss_pred HHhhHHHHHHHHHhc-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcc---cCCCCCCChhhHHhhhchHHHHHHhcC
Q psy12365 728 DLRQWREALALATSL-GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSME---LATPDIQDPECQRKCKEGIARTSIRVG 803 (1324)
Q Consensus 728 ~~~~~~~Al~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~---~~~~~~~~~~~~~~~~~~la~~~~~~g 803 (1324)
+...... .+.....++..+|.+|...|+|++|+.+|++++. ..+. ........+.++|.+|.+.|
T Consensus 142 --------l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~---~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 142 --------LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp --------HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc---cccchHHHHHhHHHHHHHHh
Confidence 2222111 1122346789999999999999999999999984 3443 22223367888999999999
Q ss_pred CHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHH-HHHHHHhcC
Q psy12365 804 DFRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDA-VTLYESAGN 846 (1324)
Q Consensus 804 ~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A-~~~y~~~~~ 846 (1324)
++++|+++++++.. ..++..+|.++..+|++++| ..+|+++..
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999887632 56788999999999999999 777877654
No 296
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.4e-08 Score=105.41 Aligned_cols=145 Identities=8% Similarity=0.035 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~ 821 (1324)
....+..+|..+...|+|++|+..|++++..+|. +...+.++|.+|.+.|++++|++.++++.. ..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3466788999999999999999999999999997 566777899999999999999999998743 7889
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcCHHH--------HHH---HHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHH
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGNYEK--------AAT---CYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYR 890 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~~~~--------~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~ 890 (1324)
+.+|..+..+|++++|+..|+++..... .+. ...+...|.+.... ....++.+...++.++ .|+++
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999875332 111 22223334333321 1112566666676665 57888
Q ss_pred HHHHHHHHhhC
Q psy12365 891 ESVGAYERAED 901 (1324)
Q Consensus 891 ~A~~~y~~a~~ 901 (1324)
+|++.|.++.+
T Consensus 153 ~A~~~~~~al~ 163 (281)
T 2c2l_A 153 RELEECQRNHE 163 (281)
T ss_dssp HHHTTTSGGGT
T ss_pred HHHHHHHhhhc
Confidence 88888887653
No 297
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=3.8e-08 Score=95.18 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=85.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
|+....++.+|..+...|+|++|+..|++++..+|. +...+.++|.+|.+.|++++|++.++++ |+ ..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 445578899999999999999999999999999998 5677888999999999999999999887 33 88
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+++.+|.+|..+|++++|+..|+++..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 298
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.69 E-value=1.8e-07 Score=118.47 Aligned_cols=178 Identities=13% Similarity=-0.016 Sum_probs=118.7
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCC-----CcEEEEECCC-cEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCC--------
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRD-----SSVSIYNKHG-KLIDKITLPGLCIVMDWDSEGDLLGIISSNSS-------- 77 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~-----~~v~v~~~~~-~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~-------- 77 (1324)
|...+..++||| ||++|++++.+ ..|++||+.+ +.+........+..++|+|| +.|+++.. ++
T Consensus 161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~-~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRF-AEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEEC-CCC-------
T ss_pred CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEe-cCcccccccc
Confidence 333678899999 99999987653 3599999854 44332112222357899999 99988876 43
Q ss_pred ------eEEEEEcCCCeE--EEEecC--CCCCceEEEEecCCCEEEE----------EEEEEeCCCC--e-EEEEe-cCC
Q psy12365 78 ------AVNVWNTYTKKR--TIVDSG--LRDPLTCLVWCKQCSMLQL----------SVSIYNKHGK--L-IDKIT-LPG 133 (1324)
Q Consensus 78 ------~i~iw~~~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~----------~i~v~d~~g~--~-~~~~~-~~~ 133 (1324)
.|++|++.++.. ..++.. +...+..+.|||||++|++ .|++||..+. . ...+. ...
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 389999876642 233333 3335889999999998876 5888887643 2 34444 333
Q ss_pred cEEEEEEcCCCCEEEEEEcC----CCcEEEeeccc--C----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 134 LCIVMDWDSEGDLLGIISSN----SSAVNVWTLLT--Y----------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 134 ~i~~~~~~~~g~~l~~~~~~----~~~i~iwd~~~--~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.+... ++|+|..|++ .+. ++.|.+||..+ . ..+..+.|+ ++.++++...+|..++|..+
T Consensus 318 ~~~~~-~~~dg~~l~~-~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWF-VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SCEEE-EEEETTEEEE-EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ceEEE-EeccCCEEEE-EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 44444 4599998888 543 34588888753 1 235567777 55667777888887777654
No 299
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.68 E-value=2e-06 Score=96.61 Aligned_cols=176 Identities=14% Similarity=-0.004 Sum_probs=128.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCC------CEEEEEEcCCCCEEEEEEc-CCCeEEEEEc
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPG------LCIVMDWDSEGDLLGIISS-NSSAVNVWNT 84 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~------~i~~i~~~~d~~~l~~~~~-~d~~i~iw~~ 84 (1324)
...+..++++| +|...++...++.|.+||. +++....+.... ....+++ ++..+.++.. .++.|.++|.
T Consensus 83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEET
T ss_pred CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC
Confidence 45688999999 8855444437899999998 456666676444 5667888 4556666654 2789999999
Q ss_pred CCCeEEEEecCCCCCceEEEEecCCCEEEE---E------------EEEEeCC-CCeEEEEecC--CcEEEEEEcCCCCE
Q psy12365 85 YTKKRTIVDSGLRDPLTCLVWCKQCSMLQL---S------------VSIYNKH-GKLIDKITLP--GLCIVMDWDSEGDL 146 (1324)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~---~------------i~v~d~~-g~~~~~~~~~--~~i~~~~~~~~g~~ 146 (1324)
.+++....... ...+..+.++|+|+++++ . |.++|.. ++....+..+ .....++|+|+++.
T Consensus 160 ~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 160 ETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp TTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred CCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 98887665543 334678999999987766 3 8888976 5555566543 36889999999999
Q ss_pred EEEEEcCCCcEEEeecccC------------CCeeEEEEcCCCCEEE-EE----eCCCcEEEEEcC
Q psy12365 147 LGIISSNSSAVNVWTLLTY------------TLGERISWSDDGQLLA-VT----TSGGSVKIYLSK 195 (1324)
Q Consensus 147 l~~~~~~~~~i~iwd~~~~------------~~i~~~~~s~~~~~l~-~~----~~dg~i~~~~~~ 195 (1324)
+.+ +.. .|.+||..+. ..+..++++|++..|. +. ..+|.|.+|+..
T Consensus 239 lyv-~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 239 LYW-INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEE-ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEE-Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 887 544 8889988621 3477899999544444 44 467889999976
No 300
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.68 E-value=5e-07 Score=100.08 Aligned_cols=178 Identities=14% Similarity=0.048 Sum_probs=124.6
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEe-C----CCCEEEEEEcCCCCEEEEEEc-----------
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKIT-L----PGLCIVMDWDSEGDLLGIISS----------- 74 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~-~----~~~i~~i~~~~d~~~l~~~~~----------- 74 (1324)
+...+.+++++| +|+++++...++.|.+||. +|+...... . ...+.+++++|+|+.+++...
T Consensus 67 ~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 67 PSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp SCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred CCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 456788999999 9998877766788999998 666543322 1 134678999999997776320
Q ss_pred -----CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC--CCe---EEEEe-cCCcEEEE
Q psy12365 75 -----NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH--GKL---IDKIT-LPGLCIVM 138 (1324)
Q Consensus 75 -----~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g~~---~~~~~-~~~~i~~~ 138 (1324)
..+.|..++.. ++.... ..+...+..++|+|+|+.+++ .|.+|+.. |+. ...+. ..+.+..+
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTLSAP-IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCEEEE-ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred ccccCCCcEEEEECCC-CCEEEe-ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence 12456666655 554433 355566899999999998854 89999974 554 22221 33456689
Q ss_pred EEcCCCCEEEEEEcCCCcEEEeecccC--------CCeeEEEE-cCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 139 DWDSEGDLLGIISSNSSAVNVWTLLTY--------TLGERISW-SDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 139 ~~~~~g~~l~~~~~~~~~i~iwd~~~~--------~~i~~~~~-s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+++++|+++++ . ++.|.+||.+.. ..+++++| +|+++.|++++.+| +.-++.+.
T Consensus 224 ~~d~~G~l~v~-~--~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 224 RVDAGGLIWAS-A--GDGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEBTTSCEEEE-E--TTEEEEECTTSCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EECCCCCEEEE-c--CCeEEEECCCCCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 99999997766 4 788999998721 23889999 58999999988764 33444443
No 301
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.66 E-value=1.6e-06 Score=97.25 Aligned_cols=178 Identities=10% Similarity=-0.040 Sum_probs=130.5
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
+..+..+.+. ++...++...++.|.+||. +++.+..+.....+..+++++++ .+.++...++.|.+||..+++...
T Consensus 43 g~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 43 GDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp BSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred CccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence 3446677774 4555566666789999998 67888888766778999999998 555555238999999999988765
Q ss_pred EecCCC-----CCceEEEEecCCCEEEE------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCC-----
Q psy12365 92 VDSGLR-----DPLTCLVWCKQCSMLQL------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNS----- 154 (1324)
Q Consensus 92 ~~~~~~-----~~v~~~~~s~~~~~l~~------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~----- 154 (1324)
...... ..+..+++ .++..+++ .|.+||.. ++....+........+.++|+|+++++ +..+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~-~~~~~~~~~ 197 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTI-TDGGYEGSP 197 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEE-BCCBCTTCS
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEE-ECCCccCCc
Confidence 443222 14567777 44444444 69999976 666777776666778999999997776 5544
Q ss_pred -----CcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 155 -----SAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 155 -----~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+.|.++|..+. ..+..++|+||++.|+++.. .|.+||....
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 78999998732 25788999999999988765 7888887654
No 302
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=7.9e-08 Score=90.41 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS----------- 817 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------- 817 (1324)
..+..+|..+...|+|++|+++|++++..+|. +..++.++|.+|.++|++++|++.++++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 45678999999999999999999999999997 567788899999999999999999887632
Q ss_pred -hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 818 -SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 818 -~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
..++..+|.++..+|++++|+..|+++.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3478889999999999999999998875
No 303
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.66 E-value=4.6e-07 Score=103.14 Aligned_cols=164 Identities=9% Similarity=0.057 Sum_probs=112.2
Q ss_pred eeEEEEecCCCCEEEEEeCC---------------------------CcEEEEECCCcEE-EEEeCCCCEEEEEEcCCCC
Q psy12365 16 DVYVCWQRRTGELLATTGRD---------------------------SSVSIYNKHGKLI-DKITLPGLCIVMDWDSEGD 67 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~---------------------------~~v~v~~~~~~~~-~~~~~~~~i~~i~~~~d~~ 67 (1324)
+..++|+| ||+.|++++.+ ..|.+||..+... ..+..+ .+..+.|+|||
T Consensus 106 ~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-
T ss_pred ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-
Confidence 78999999 99999988642 5688999855433 555443 78899999999
Q ss_pred EEEEEEcCC------C-eEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-------------EEEEEeCCCCeEE
Q psy12365 68 LLGIISSNS------S-AVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-------------SVSIYNKHGKLID 127 (1324)
Q Consensus 68 ~l~~~~~~d------~-~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------------~i~v~d~~g~~~~ 127 (1324)
.++++.. + . ...||.+.+++...+.. + ..+.. ++|+|+.|++ .|.+|| .|+. .
T Consensus 183 ~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~ 255 (347)
T 2gop_A 183 IVVNVPH-REIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEV-M 255 (347)
T ss_dssp EEEEEEC-CCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCE-E
T ss_pred EEEEEec-ccccccccccccEEEeCCCceEEecc-C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCce-E
Confidence 6666544 3 2 33444333666554433 3 44444 4999998875 477788 5543 3
Q ss_pred EEe--cCCcEEE-EEEcCCCCEEEEEEcCCCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcE-EEEEc
Q psy12365 128 KIT--LPGLCIV-MDWDSEGDLLGIISSNSSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSV-KIYLS 194 (1324)
Q Consensus 128 ~~~--~~~~i~~-~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i-~~~~~ 194 (1324)
.+. +...+.. +.|+ || ++++ ++.++.++|| +.+. ..|..+.|+| .++++++.++.. .+|..
T Consensus 256 ~l~~~~~~~~~~~~~~s-dg-~~~~-~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 256 GILDEVDRGVGQAKIKD-GK-VYFT-LFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ESSTTCCSEEEEEEEET-TE-EEEE-EEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred eccccCCcccCCccEEc-Cc-EEEE-EecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 333 3567776 9999 88 7777 8889999999 7521 4578889999 677777777664 67765
Q ss_pred C
Q psy12365 195 K 195 (1324)
Q Consensus 195 ~ 195 (1324)
.
T Consensus 330 ~ 330 (347)
T 2gop_A 330 D 330 (347)
T ss_dssp S
T ss_pred C
Confidence 4
No 304
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=6.4e-08 Score=97.54 Aligned_cols=143 Identities=20% Similarity=0.139 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC----hHHHHHHH
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS----SVLKNECA 825 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~l~ 825 (1324)
.....|..+...|++++|+..|++++..+|+ +...+.+++.++.+.|++++|+..+++... ......++
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 4577889999999999999999999999887 566777899999999999999999998854 23333334
Q ss_pred HH-HHHccCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-------CHHHHHHHHHHHHHcCCH
Q psy12365 826 DI-LQQFNKLNDAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-------SATTFIQYAKAKEAMGSY 889 (1324)
Q Consensus 826 ~~-~~~~g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~a~~~~~~g~~ 889 (1324)
.+ +...+...+|+..|+++.. +..++.+|...|++++|+..+++.. ++.++..+|.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 33 2232344457888888754 5567788899999999988887654 245888899999999999
Q ss_pred HHHHHHHHHh
Q psy12365 890 RESVGAYERA 899 (1324)
Q Consensus 890 ~~A~~~y~~a 899 (1324)
++|+..|+++
T Consensus 161 ~~A~~~y~~a 170 (176)
T 2r5s_A 161 NAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999999884
No 305
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.66 E-value=1.9e-06 Score=93.49 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=125.5
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeCC--CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~~--~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
..+.++.++| +|++++ +.++.|..||.+|+.+..+..+ ..+.++.+.|||+.+++.+..++.|..+|..+..+..
T Consensus 37 ~~~~~~~~~p-dG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~ 113 (276)
T 3no2_A 37 WECNSVAATK-AGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSK 113 (276)
T ss_dssp CCCCEEEECT-TSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEE
T ss_pred CCCcCeEECC-CCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEE
Confidence 4688999999 999888 4467899999999999998843 4788999999999988876425677778875444333
Q ss_pred Eec-----CCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEee
Q psy12365 92 VDS-----GLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWT 161 (1324)
Q Consensus 92 ~~~-----~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd 161 (1324)
.-. .+......+.+.++|+++++ .|..||.+|+.+.++...+.+.++...++|+.+++ +..++.|..+|
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~-~~~~~~v~~~d 192 (276)
T 3no2_A 114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVA-CGDAHCFVQLN 192 (276)
T ss_dssp EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEE-CBTTSEEEEEC
T ss_pred EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEE-eCCCCeEEEEe
Confidence 221 11123556788999999988 89999999999999887777778888999999988 77777887777
Q ss_pred cccCCC----------------eeEEEEcCCCCEEEEE
Q psy12365 162 LLTYTL----------------GERISWSDDGQLLAVT 183 (1324)
Q Consensus 162 ~~~~~~----------------i~~~~~s~~~~~l~~~ 183 (1324)
..+... +..+...++|.++++.
T Consensus 193 ~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 193 LESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 764322 4556666777666655
No 306
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.65 E-value=7e-12 Score=135.90 Aligned_cols=411 Identities=15% Similarity=0.125 Sum_probs=250.3
Q ss_pred hcHHHHHHHHHhhCCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHH
Q psy12365 632 LNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQ 711 (1324)
Q Consensus 632 ~~~~~A~~~~~~~~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 711 (1324)
++++.|.++++..+.+..|..||.+.+..+...+|+.+|.+++|... +...-.++...|++++-.+
T Consensus 39 ~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~--------------y~eVi~~A~~~~~~edLv~ 104 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSS--------------YMEVVQAANTSGNWEELVK 104 (624)
T ss_dssp CCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCS--------------SSHHHHHTTTSSCCTTHHH
T ss_pred cccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHH--------------HHHHHHHHHhCCCHHHHHH
Confidence 46778888999999999999999999999999999999998876543 2223333444566666666
Q ss_pred HHHhCCC------hH-HHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCC
Q psy12365 712 RYLTSDI------PT-MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQD 784 (1324)
Q Consensus 712 ~~~~~~~------~~-~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~ 784 (1324)
++.-+.+ .+ +.+-.|.+.++..+--..+ ..++.+.+ ...|.-+...|.|+.|.-+|...-+...
T Consensus 105 yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~i-q~VGDrcf~e~lYeAAKilys~isN~ak----- 175 (624)
T 3lvg_A 105 YLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNVSNFGR----- 175 (624)
T ss_dssp HHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCT-HHHHHHHHHSCCSTTSSTTGGGSCCCTT-----
T ss_pred HHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccH-HHHHHHHHHccCHHHHHHHHHhCccHHH-----
Confidence 5543322 12 3333444444422211111 11222222 5678888999999999888877554444
Q ss_pred hhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHH----HHHhcCHHHHHHHHHHcCCH
Q psy12365 785 PECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTL----YESAGNYEKAATCYIQLKNW 860 (1324)
Q Consensus 785 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----y~~~~~~~~~~~~~~~~~~~ 860 (1324)
||.++.++|+|+.|++.++++....+|..+...+...+++.-|-.. .-.+...+.++..|...|.|
T Consensus 176 ----------LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 176 ----------LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 245 (624)
T ss_dssp ----------TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCH
Confidence 7889999999999999999999988898888888888887766433 22334466666777777777
Q ss_pred HHHHhhhhccC-----CHHHHHHHHHHHH----------------------------HcCCHHHHHHHHHHhhChHHHHH
Q psy12365 861 TKIGQLLPHIK-----SATTFIQYAKAKE----------------------------AMGSYRESVGAYERAEDYDNVVR 907 (1324)
Q Consensus 861 ~~A~~~~~~~~-----~~~~~~~~a~~~~----------------------------~~g~~~~A~~~y~~a~~~~~a~~ 907 (1324)
++.+.+++... ...++..+|-.|. +...+.|++-+|.+-.+||+|+.
T Consensus 246 ~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77777776554 3334444444443 46678889999999899998887
Q ss_pred HHHhc---cCCHHHHHHHHHHhcChHHHHHHHHHHHHc---------------CCHHHHHHHHHHcCCHH----------
Q psy12365 908 VDLDH---LNDIRHAVDIVKAKKCTEGAKRIADYCNKH---------------GDFGAAIHFLILSKCYQ---------- 959 (1324)
Q Consensus 908 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~la~~~~~~---------------g~~~~Ai~~~~~~~~~~---------- 959 (1324)
.+.++ .-+.+.-.+++.+..+.+.++..-.+|.+. =|...+++++.+.+++.
T Consensus 326 tMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq 405 (624)
T 3lvg_A 326 TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 405 (624)
T ss_dssp TTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCC
T ss_pred HHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHH
Confidence 76654 122233334444556666666555555433 23444555555544321
Q ss_pred --------HHH-HHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhCCHHHHHHHHHhhcC
Q psy12365 960 --------DAF-NLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDM---FRAAQYYYHAKEYGRAMKLLLVTAR 1027 (1324)
Q Consensus 960 --------~A~-~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~---~~A~~~y~~~g~~~~A~~~~~~~~~ 1027 (1324)
+|+ ++.-+...-+.+.+. ++ .-+.-....||.-+++..-. .-|..+|.+.++|.+|+.+..+-.
T Consensus 406 ~~N~~aVNeAln~L~IEEEDy~~LR~S--Id-~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk- 481 (624)
T 3lvg_A 406 NHNNKSVNESLNNLFITEEDYQALRTS--ID-AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS- 481 (624)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHT--TS-SCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-
T ss_pred HhhHHHHHHHHHHHHhhhhhHHHHHHH--HH-HhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcc-
Confidence 221 111111000011111 00 00000112445555554422 347788999999999999888853
Q ss_pred CCCCcHHHHHHHHhhhhcccCHHHHHHHHHhhccccCCCCCChHHHHHHHHh--ccCHHHHHHHH
Q psy12365 1028 QDKDSDENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRNPKFLYRVLMN--TGDYVAASSCA 1090 (1324)
Q Consensus 1028 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~y~~--~~~~~~A~~~~ 1090 (1324)
-+.+| ++....+++..+.+.+++|+.. .+.. -.+.+.+|.- +=+++-+++.+
T Consensus 482 ---lykDA----ietAa~S~~~elaeeLL~yFv~--~g~~--EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 482 ---LYKDA----MQYASESKDTELAEELLQWFLQ--EEKR--ECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp ---CTTGG----GTTTTTCCCTTHHHHHHHHHHH--HCST--HHHHHHHHHTSSSSSCHHHHHHH
T ss_pred ---cHHHH----HHHHHHcCCHHHHHHHHHHHHH--cCch--HHHHHHHHHHhhccChHHHHHHH
Confidence 24444 4555778899999999999873 1222 2233334322 23556555544
No 307
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=2.9e-07 Score=95.26 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=112.0
Q ss_pred HHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHH
Q psy12365 657 CLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREAL 736 (1324)
Q Consensus 657 ~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al 736 (1324)
++..|++++|+..++..... ... ....+..+|.++...|++++|+..|.+ |+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------al 53 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH--------PAT-ASGARFMLGYVYAFMDRFDEARASFQA-------------------LQ 53 (203)
T ss_dssp -----CHHHHHHHHHHHHTS--------TTT-HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HH
T ss_pred ccccccHHHHHHHHHHhcCC--------hHH-HHHHHHHHHHHHHHhCcHHHHHHHHHH-------------------HH
Confidence 35667777777733322110 001 345567889999999999999997644 44
Q ss_pred HHHHhcC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 737 ALATSLG-SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 737 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
.+++... ++....++..+|.++...|++++|+++|++++.........+.....++..++.++...|++++|+..+++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 54 QQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444432 233456788999999999999999999999988722100012245677788999999999999999888776
Q ss_pred CC-----------hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 816 NS-----------SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 816 ~~-----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
.. ..++..+|.++...|++++|..+|+++..
T Consensus 134 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 32 33467889999999999999888877653
No 308
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.64 E-value=5.4e-06 Score=92.91 Aligned_cols=175 Identities=10% Similarity=-0.056 Sum_probs=121.8
Q ss_pred eeEEEEecCCCCEE-EEEeCCCcEEEEECCCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 16 DVYVCWQRRTGELL-ATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 16 i~~~~~sp~~g~~l-~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
..++.|+| +++.+ .+...++.|..||..+.....+..+..+.++.|+|+|+++++. . ..|.+||..+++......
T Consensus 51 ~egp~~~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~--~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDP-ASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D--DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEET-TTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T--TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeC-CCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C--CCEEEEECCCCcEEEEee
Confidence 46889999 75554 4445678899999977666666667789999999999876654 3 459999998887654432
Q ss_pred CC----CCCceEEEEecCCCEEEE-----------EEEEEeCCCCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEE
Q psy12365 95 GL----RDPLTCLVWCKQCSMLQL-----------SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNV 159 (1324)
Q Consensus 95 ~~----~~~v~~~~~s~~~~~l~~-----------~i~v~d~~g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~i 159 (1324)
.. ...+..+.++|+|.++++ .|..++ .|+.............++|+|||+.+.+..+.++.|.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 11 134789999999987665 244445 45433322233456789999999987663566788999
Q ss_pred eecc--cC----------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 160 WTLL--TY----------------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 160 wd~~--~~----------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
|+.. +. ..+..+.++++|.+.++...++.|..|+..
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 9864 21 124567888888766665566778888753
No 309
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.63 E-value=6.5e-07 Score=94.63 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=129.6
Q ss_pred HcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchH-------HHHHHhcCCHHHHHHHHHhcCC---------------
Q psy12365 760 MTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGI-------ARTSIRVGDFRLGIRLAAESNS--------------- 817 (1324)
Q Consensus 760 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~--------------- 817 (1324)
..+++.+|++.|.+++..+|. ....+.++ +.++.+.++..+++..+++...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChh-------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 469999999999999999998 44555556 4556555555555554444322
Q ss_pred -----------hHHHHHHHHHHHHccCHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhccC--C-----
Q psy12365 818 -----------SVLKNECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHIK--S----- 872 (1324)
Q Consensus 818 -----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~--~----- 872 (1324)
.++...++..|..+|+|++|.++|+.... ....+.++.+.++|++|+..++... .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 35667789999999999999999988753 2334568899999999999998776 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCC-HHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 873 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND-IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 951 (1324)
Q Consensus 873 ~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~ 951 (1324)
..+++.+|.++...|++++|+..|.++.. ... |.. ..++.+.+|.++.++|+.++|+..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----------g~~~P~~---------~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEAND-----------SPAGEAC---------ARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------STTTTTT---------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----------CCCCccc---------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34889999999999999999999999642 111 221 224567899999999999999999
Q ss_pred HHHc
Q psy12365 952 LILS 955 (1324)
Q Consensus 952 ~~~~ 955 (1324)
|.++
T Consensus 231 l~~a 234 (282)
T 4f3v_A 231 LEWL 234 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 310
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.62 E-value=1.5e-05 Score=88.93 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=110.2
Q ss_pred EEEecCCCCEEEEEeC-----CCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEc---------CCCeEEEEE
Q psy12365 19 VCWQRRTGELLATTGR-----DSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISS---------NSSAVNVWN 83 (1324)
Q Consensus 19 ~~~sp~~g~~l~~~~~-----~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~---------~d~~i~iw~ 83 (1324)
....| +++.+.++.. ++.|.++|. +++.+..+....... +.++|||+++.++.. .++.|.+||
T Consensus 38 ~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 44568 9999888865 578999997 677888887433334 999999998887751 257899999
Q ss_pred cCCCeEEEEec-CC------CCCceEEEEecCCCEEEE-------EEEEEeCC-CCeEEEEecCCcE--------EEEEE
Q psy12365 84 TYTKKRTIVDS-GL------RDPLTCLVWCKQCSMLQL-------SVSIYNKH-GKLIDKITLPGLC--------IVMDW 140 (1324)
Q Consensus 84 ~~~~~~~~~~~-~~------~~~v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~~~~~~~~~i--------~~~~~ 140 (1324)
..+.+...... +. ......+.|+|||+++.+ .|.++|.. ++.+.++..++.. ..++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99988765542 21 125678999999998877 78899976 6677777655421 11244
Q ss_pred cCCCCEEEEEEcCC-CcEEE-----eecccCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q psy12365 141 DSEGDLLGIISSNS-SAVNV-----WTLLTYTLGERISWS-DDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 141 ~~~g~~l~~~~~~~-~~i~i-----wd~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++||+++.+ ...+ +.+.. .+..+........|. ++|+++ ..+.+|.++++|...
T Consensus 196 ~~DG~~~~v-~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 196 CRDGSLAKV-AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSS 256 (386)
T ss_dssp ETTSCEEEE-ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTT
T ss_pred CCCCCEEEE-ECCCCCeEEEeecceeccccccccccceeEcCCCcEE-EEeCCCEEEEEECCC
Confidence 555655554 3332 34311 111111111123553 566433 355567777777643
No 311
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.61 E-value=8.7e-06 Score=90.06 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=131.4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 10 ~~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+...+.++.++| +|.++++...++.|.+||..+. ...+. ....+.+++++++|..+++... ++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSD-KGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENA-ANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECTT-
T ss_pred CCcCCCccceEECC-CCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCC-CCeEEEECCC-
Confidence 34567899999999 9998876666788999998854 34443 3467899999999987766544 7889999987
Q ss_pred CeEEEEe-cCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEE
Q psy12365 87 KKRTIVD-SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVN 158 (1324)
Q Consensus 87 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~ 158 (1324)
++..... ......+.++.++|+|.++++ .|..||..|+...... ....+..++++++|...++ ...++.|.
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~ 165 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFT-ENQNNAIG 165 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEE-ETTTTEEE
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEE-eCCCCEEE
Confidence 3333222 224557899999999987776 7889998665543322 2356889999999988877 66778888
Q ss_pred Eeeccc----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 159 VWTLLT----------YTLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 159 iwd~~~----------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
.||... ...+..+.++++|.+.++...++.|..|+.
T Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 166 RITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 887741 134678889999886665555677887775
No 312
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=1.6e-06 Score=89.56 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=111.7
Q ss_pred HhcCCHHHHHH---HHHhcCC--hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHH
Q psy12365 800 IRVGDFRLGIR---LAAESNS--SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874 (1324)
Q Consensus 800 ~~~g~~~~A~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 874 (1324)
...|++++|++ ++...+. ..++..+|.++..+|++++|..+|+++... +...++... ...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~---------~~~ 67 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ------AQKSGDHTA---------EHR 67 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHTTCCHHH---------HHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH------HHHcCCcHH---------HHH
Confidence 46799999999 7766553 778899999999999999999999877642 222221111 244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 875 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL 954 (1324)
Q Consensus 875 ~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~ 954 (1324)
++..+|.++...|++++|+.+|.+ ++.++.....++.... .+...+|.++...|++++|+.++.+
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLE------ERELLASLPEDPLAAS---------ANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHSCCCHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCccHHHHH---------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677789999999999999999998 5555554222332111 2367899999999999999999886
Q ss_pred cCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 955 SKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 955 ~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
+ +.++...+... .....+..+|..+...|++.+|..+|.+
T Consensus 133 a------l~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 133 S------LVYAQQADDQV-----------AIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp H------HHHHHHTTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H------HHHHHhccchH-----------HHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6 33333221100 1134567788887777777777776544
No 313
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.60 E-value=1.7e-05 Score=90.34 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=107.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEc---------CCCeEEEEEcCCCeE
Q psy12365 25 TGELLATTGRD-----SSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISS---------NSSAVNVWNTYTKKR 89 (1324)
Q Consensus 25 ~g~~l~~~~~~-----~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~---------~d~~i~iw~~~~~~~ 89 (1324)
+++.+.++... +.|.++|. +++.+..+...... .+.++|||+++.++.. .++.|.++|..+++.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 77777766543 68999997 67888888844334 8999999998888762 267899999998877
Q ss_pred EEEec-C------CCCCceEEEEecCCCEEEE-------EEEEEeCC-CCeEEEEecCCcE--------EEEEEcCCCCE
Q psy12365 90 TIVDS-G------LRDPLTCLVWCKQCSMLQL-------SVSIYNKH-GKLIDKITLPGLC--------IVMDWDSEGDL 146 (1324)
Q Consensus 90 ~~~~~-~------~~~~v~~~~~s~~~~~l~~-------~i~v~d~~-g~~~~~~~~~~~i--------~~~~~~~~g~~ 146 (1324)
..... + .......+.|+|||+++.+ .|.+.|.. ++.+..+...+.+ ..+.+++||..
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSL 241 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCE
Confidence 65442 2 1234678999999998877 68899976 6666777654421 11345555555
Q ss_pred EEEEEcCCCcEE-----EeecccCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 147 LGIISSNSSAVN-----VWTLLTYTLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 147 l~~~~~~~~~i~-----iwd~~~~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
+++ ...++.+. +++.........+.+++++..+++.+..|.+.+.|.
T Consensus 242 ~~V-~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 242 ARV-DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp EEE-ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred EEE-ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence 544 33334332 222221111123456666666666665665555554
No 314
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=1.3e-07 Score=115.81 Aligned_cols=133 Identities=8% Similarity=-0.019 Sum_probs=101.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHHHHccCHH
Q psy12365 761 TGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADILQQFNKLN 835 (1324)
Q Consensus 761 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~~~~g~~~ 835 (1324)
.|++++|++.|++++..+|. +...+..+|.++.+.|++++|++.++++.. ..++..+|.++..+|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp -------------------C-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 48899999999999999987 466777899999999999999999988732 789999999999999999
Q ss_pred HHHHHHHHhcC--------HHHHHHHHHHcCCHHHHHhhhhccC-----CHHHHHHHHHHHHHc---CCHHHHHHHHHHh
Q psy12365 836 DAVTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAM---GSYRESVGAYERA 899 (1324)
Q Consensus 836 ~A~~~y~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~---g~~~~A~~~y~~a 899 (1324)
+|+.+|+++.. +..++.+|...|++++|++.+++.. +..++..+|.++... |++++|++.|.++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99999999864 6677899999999999999988764 677899999999999 9999999999985
Q ss_pred h
Q psy12365 900 E 900 (1324)
Q Consensus 900 ~ 900 (1324)
.
T Consensus 155 l 155 (568)
T 2vsy_A 155 V 155 (568)
T ss_dssp H
T ss_pred H
Confidence 3
No 315
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.59 E-value=1.5e-05 Score=88.14 Aligned_cols=178 Identities=8% Similarity=-0.013 Sum_probs=131.0
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
+...+.+++++| +|.+.++...++.|..|+.+++. ..+. ....+.+++++|+|..+++... ++.|.+||. +++
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMN-GNRIGRITD-DGK 130 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECT-TCC
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcE-EEEeCCCcCCCceeeEECCCCCEEEEecC-CceEEEECC-CCC
Confidence 456789999999 99988776667889999987654 3343 2357899999999977666544 789999998 454
Q ss_pred EEEE-ecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEEe
Q psy12365 89 RTIV-DSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 160 (1324)
Q Consensus 89 ~~~~-~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~iw 160 (1324)
.... .......+..++++|+|...++ .|..||..|+...... ....+..++++++|.+.++ ...++.|..|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFV-EIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEE-ETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEE-ccCCceEEEE
Confidence 4433 2234556899999999987776 7889998666543211 2346789999999997776 6667888888
Q ss_pred eccc----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 161 TLLT----------YTLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 161 d~~~----------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
|... ...+..+.++++|.+.++...++.|..|+.
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 210 TTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 8741 145788999999986555546788888886
No 316
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=2e-07 Score=87.39 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
.+.|+.+|..+++.|++++|+.+|.++.. .-.. ....+..+|.++..+|++++|+..|.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~----------- 72 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK--------RDPE-NAILYSNRAACLTKLMEFQRALDDCDT----------- 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCC-CHHHHHHHhhHHHhhccHHHHHHHHHH-----------
Confidence 45688999999999999999999987632 2223 456778999999999999999997655
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
|+++ .+....++..+|.++...|++++|++.|+++++.+|+
T Consensus 73 --------al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 73 --------CIRL-----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp --------HHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------HHHh-----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 3321 3455778999999999999999999999999999997
No 317
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.58 E-value=2.6e-07 Score=87.86 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q psy12365 692 TSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFY 771 (1324)
Q Consensus 692 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y 771 (1324)
.+..+|.++...|++++|+..|.++. . . .+.....+..+|..+...|++++|+.+|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------~----~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 58 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKAL-------------------E----L-DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-------------------H----H-CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHH-------------------H----c-CCcchhHHHHHHHHHHHhcCHHHHHHHH
Confidence 34567788888888888888765531 1 1 2334567788899999999999999999
Q ss_pred HHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 772 QKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 772 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
++++...|. ....+..++.++...|++++|+++++++ +. ..++..+|.++...|++++|..+|+++.
T Consensus 59 ~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 59 QKALELDPR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999988886 3455667899999999999999988776 22 7788899999999999999999988775
No 318
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=1.8e-06 Score=95.27 Aligned_cols=172 Identities=5% Similarity=-0.086 Sum_probs=118.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCC-----hH------HHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHH
Q psy12365 794 GIARTSIRVGDFRLGIRLAAESNS-----SV------LKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTK 862 (1324)
Q Consensus 794 ~la~~~~~~g~~~~A~~~~~~~~~-----~~------~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~ 862 (1324)
..+..+...|++++|++++++... .. .+..+|.++...|++++|+.+|+++... ....+++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~------~~~~~~~~- 152 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ------QLTGIDVY- 152 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT------CCCCSCTT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------hcccccHH-
Confidence 357778889999999999887532 11 2335788888888999998888776531 00011110
Q ss_pred HHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHc
Q psy12365 863 IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH 942 (1324)
Q Consensus 863 A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~ 942 (1324)
....++..+|.+|...|++++|+.+|.+ |+.++.+...+.... ..++.++|.+|.++
T Consensus 153 --------~~~~~~~~lg~~y~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~---------~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 153 --------QNLYIENAIANIYAENGYLKKGIDLFEQ------ILKQLEALHDNEEFD---------VKVRYNHAKALYLD 209 (293)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHSSCCHHHH---------HHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhcccchhHH---------HHHHHHHHHHHHHH
Confidence 0133677899999999999999999999 444554432333322 23467999999999
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHh
Q psy12365 943 GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK-DMFRAAQYYYHA 1012 (1324)
Q Consensus 943 g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g-~~~~A~~~y~~~ 1012 (1324)
|+|++|++++.++ +.++.+.+. ....+..+..+|.+|..+| .+++|..+|.++
T Consensus 210 ~~y~~A~~~~~~a------l~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 210 SRYEESLYQVNKA------IEISCRINS-----------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TCHHHHHHHHHHH------HHHHHHTTB-----------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH------HHHHHHcCc-----------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999998866 444432221 1233688999999999988 468888887653
No 319
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=4e-07 Score=95.05 Aligned_cols=120 Identities=11% Similarity=-0.016 Sum_probs=98.2
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12365 693 SILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQ 772 (1324)
Q Consensus 693 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~ 772 (1324)
++.+|.++...|++++|+..|.++.+ + .+.++..+|.++...|++++|+.+|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------------------------~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 61 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------------------------P-HSRICFNIGCMYTILKNMTEAEKAFT 61 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------------------------C-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------------------------C-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777888888888887766531 1 35678899999999999999999999
Q ss_pred HhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----h----------------HHHHHHHHHHHHc
Q psy12365 773 KSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----S----------------VLKNECADILQQF 831 (1324)
Q Consensus 773 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~----------------~~~~~l~~~~~~~ 831 (1324)
+++..+|. ....+..+|.++...|++++|++.++++.. . .++..+|.++..+
T Consensus 62 ~al~~~~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 62 RSINRDKH-------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp HHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred HHHHhCcc-------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 99999887 456677899999999999999998877622 2 7889999999999
Q ss_pred cCHHHHHHHHHHhcC
Q psy12365 832 NKLNDAVTLYESAGN 846 (1324)
Q Consensus 832 g~~~~A~~~y~~~~~ 846 (1324)
|++++|...|+++..
T Consensus 135 g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 135 EEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 320
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.56 E-value=3e-06 Score=106.79 Aligned_cols=177 Identities=7% Similarity=-0.121 Sum_probs=122.5
Q ss_pred eeEEEEecCCCCEEEEEeCCCc----------------EEEEECCCcE---EEEEe---CCCCEEEEEEcCCCCEEEEEE
Q psy12365 16 DVYVCWQRRTGELLATTGRDSS----------------VSIYNKHGKL---IDKIT---LPGLCIVMDWDSEGDLLGIIS 73 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~----------------v~v~~~~~~~---~~~~~---~~~~i~~i~~~~d~~~l~~~~ 73 (1324)
+..++|+| ||+.|++++.++. |++|++.+.. ...+. ++..+.++.|||||++|++++
T Consensus 173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 56799999 9999999987765 9999984322 22223 344578999999999998876
Q ss_pred cC----CCeEEEEEcCC------C--eEEEEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCCCe---EEEE
Q psy12365 74 SN----SSAVNVWNTYT------K--KRTIVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHGKL---IDKI 129 (1324)
Q Consensus 74 ~~----d~~i~iw~~~~------~--~~~~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~~---~~~~ 129 (1324)
.. +..|++||..+ + ... .+..+.+.+.. .|+|+|..|++ .|.+||..+.. ...+
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGILKWV-KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSCCCE-EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred EccCCCccEEEEEECcccccccCCccceE-EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence 41 46899999876 4 333 33455555554 58999988776 69999987432 2333
Q ss_pred e-cCC--cEEEEEEcCCCCEEEEEEcCCCc--EEEeecccC----------CCeeEEEEcCCCCEEEEEe----CCCcEE
Q psy12365 130 T-LPG--LCIVMDWDSEGDLLGIISSNSSA--VNVWTLLTY----------TLGERISWSDDGQLLAVTT----SGGSVK 190 (1324)
Q Consensus 130 ~-~~~--~i~~~~~~~~g~~l~~~~~~~~~--i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~----~dg~i~ 190 (1324)
. +.. .+..+.|++++.++++ ...++. |.+|+..+. ..+..+.++|++..+++.. ..+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~lv~~-~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNFLVLC-YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp ECCCSSCEEEEEEEETTTEEEEE-EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred cCCCCCCeEEEEEEEcCCEEEEE-EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 3 333 5778999977777776 777775 455665211 4567788999998776543 246788
Q ss_pred EEEcCC
Q psy12365 191 IYLSKL 196 (1324)
Q Consensus 191 ~~~~~~ 196 (1324)
.|++..
T Consensus 409 ~~d~~t 414 (710)
T 2xdw_A 409 HCDLTK 414 (710)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 888754
No 321
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=98.56 E-value=3.2e-06 Score=88.32 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=123.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHHHHHHHH--hCChhhHHHHHHHHHhhccCC
Q psy12365 1093 VARDEAARGSYRNCHETLYSTIQELKKHK---LQVGNDLMAGLMIIHSYLLARYHVR--NANHSLAAPLLIRVAENISFF 1167 (1324)
Q Consensus 1093 ~a~~~~~~g~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~y~l~~~~~~--~g~~~~A~~~l~~~~~~~~~~ 1167 (1324)
.|......|.+.+|.+.+.+....+.-.- ....++..+.+.+...|++|....- ..-..+-.+..++++.|.-..
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c 199 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKA 199 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccC
Confidence 34446678999999999998877765433 2234456677788889998855422 111112234456777774333
Q ss_pred ---CcchhHHHHHHHHHHHHhcChHHHHHHHHHhcChhhhhhccHHHhHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCc
Q psy12365 1168 ---PLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNLEDKYRKQIELIVRKAPRKDIASPEEAHVLPCPYCDTM 1244 (1324)
Q Consensus 1168 ---p~~~~~~l~~~~~~~~~~~~~~~A~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~ 1244 (1324)
|.|....|..|+..+.+.++...|-.||+||+++...+ +...++.++...+.+++.++.+ .
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~----~~a~qArkil~~ce~~~~Da~e-i----------- 263 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG----PRAEQARKIKNKADSMASDAIP-I----------- 263 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS----HHHHHHHHHHHHHHTSCCCSSC-C-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhcCCCCccc-c-----------
Confidence 99999899999999999999999999999999853322 2323333333332111233321 1
Q ss_pred ccccccccccccCCCcceeecCccccc-cCcccCCCCCcccchHHHHHHHhcCCCCCCccc
Q psy12365 1245 VPDMMLHCASCARIIPFCIASGKHITR-NELTKCLECNFPAIHRHLVLIVDQEGFCPLCRT 1304 (1324)
Q Consensus 1245 ~~~~~~~c~~c~~~~~~c~~tg~~i~~-~~~~~C~~c~~~a~~~~~~~~~~~~~~Cp~C~~ 1304 (1324)
.. .-.++|.+|.+|-.||.+ .+...||.||.....++ ++..||.|+-
T Consensus 264 ------dy-D~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 311 (325)
T 3mv2_A 264 ------DF-DPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMI 311 (325)
T ss_dssp ------SC-CTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSC
T ss_pred ------CC-CCCCCceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 00 013578999999999984 67899999999888876 7889999976
No 322
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.55 E-value=2.1e-07 Score=113.98 Aligned_cols=147 Identities=7% Similarity=-0.010 Sum_probs=102.0
Q ss_pred cCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHH
Q psy12365 660 NLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALA 739 (1324)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~ 739 (1324)
.|++++|+.+|+++... -.. ..+.+..+|.++...|++++|++.|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------------- 50 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGL---------------------- 50 (568)
T ss_dssp ---------------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred CccHHHHHHHHHHHHHh--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence 36677777777665321 112 34566788888888888888888775532
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----
Q psy12365 740 TSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES---- 815 (1324)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---- 815 (1324)
...++...++..+|.++...|++++|+++|++++..+|+ +...+..+|.+|.+.|++++|++.++++
T Consensus 51 --~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 51 --ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp --TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 123445678888999999999999999999999998887 4566777899999999999999888876
Q ss_pred CC-hHHHHHHHHHHHHc---cCHHHHHHHHHHhcC
Q psy12365 816 NS-SVLKNECADILQQF---NKLNDAVTLYESAGN 846 (1324)
Q Consensus 816 ~~-~~~~~~l~~~~~~~---g~~~~A~~~y~~~~~ 846 (1324)
++ ..++..+|.++..+ |++++|...|+++.+
T Consensus 122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 22 77888899999999 999999998888753
No 323
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.54 E-value=5.5e-05 Score=84.43 Aligned_cols=133 Identities=14% Similarity=0.057 Sum_probs=89.5
Q ss_pred EEEcCCCCEEEEEEcC----CCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-E--------------EEEEe
Q psy12365 60 MDWDSEGDLLGIISSN----SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-S--------------VSIYN 120 (1324)
Q Consensus 60 i~~~~d~~~l~~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~--------------i~v~d 120 (1324)
....||++.+.+.... ++.|.+.|..+++.......-..+ . +.++|||+.+.+ . |.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3457999999988764 579999999999877665433333 4 999999998866 2 78899
Q ss_pred CC-CCeEEEEecCC--------cEEEEEEcCCCCEEEEEEc--CCCcEEEeecccCCCeeEE-------EEcCCCCEEEE
Q psy12365 121 KH-GKLIDKITLPG--------LCIVMDWDSEGDLLGIISS--NSSAVNVWTLLTYTLGERI-------SWSDDGQLLAV 182 (1324)
Q Consensus 121 ~~-g~~~~~~~~~~--------~i~~~~~~~~g~~l~~~~~--~~~~i~iwd~~~~~~i~~~-------~~s~~~~~l~~ 182 (1324)
.. ++....+..+. ....+.++|||+++.+ +. .++.|.++|..+...+..+ .+....+.+++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV-an~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF-YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE-EECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE-EEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 76 66666665432 3456888999988877 44 2678888888855222222 12223344555
Q ss_pred EeCCCcEEEEEcC
Q psy12365 183 TTSGGSVKIYLSK 195 (1324)
Q Consensus 183 ~~~dg~i~~~~~~ 195 (1324)
.+.||.+.+.+..
T Consensus 195 ~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 195 HCRDGSLAKVAFG 207 (386)
T ss_dssp EETTSCEEEEECC
T ss_pred ECCCCCEEEEECC
Confidence 6666666655543
No 324
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.54 E-value=1.4e-05 Score=90.85 Aligned_cols=177 Identities=16% Similarity=0.073 Sum_probs=113.5
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEC-CCcEEEEEeCC--------CCEEEEEEcCCCCEEEEEEcC-CC
Q psy12365 18 YVCWQRRTGELLATTG----------RDSSVSIYNK-HGKLIDKITLP--------GLCIVMDWDSEGDLLGIISSN-SS 77 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~----------~~~~v~v~~~-~~~~~~~~~~~--------~~i~~i~~~~d~~~l~~~~~~-d~ 77 (1324)
.+.+|| ||+++.++. .++.|.+||. +++.+..+... .....+.|+|||++++++... ++
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 899999 999998886 3577999998 56777766533 235689999999999998753 57
Q ss_pred eEEEEEcCCCeEEEE-ecCCCCCc--------eEEEEecCCCEEEE----------------------------------
Q psy12365 78 AVNVWNTYTKKRTIV-DSGLRDPL--------TCLVWCKQCSMLQL---------------------------------- 114 (1324)
Q Consensus 78 ~i~iw~~~~~~~~~~-~~~~~~~v--------~~~~~s~~~~~l~~---------------------------------- 114 (1324)
.|.++| .+++.... .. ....+ ..+.++++|..+.+
T Consensus 149 ~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 226 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred eEEEEE-CCCCEEeEEcC-CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCE
Confidence 899999 98877655 32 11110 11222233322211
Q ss_pred --------EEEEEeCCCC---eEEEEe-----------cCCcEEEEEEcCCCCEEEEEEcC----------CCcEEEeec
Q psy12365 115 --------SVSIYNKHGK---LIDKIT-----------LPGLCIVMDWDSEGDLLGIISSN----------SSAVNVWTL 162 (1324)
Q Consensus 115 --------~i~v~d~~g~---~~~~~~-----------~~~~i~~~~~~~~g~~l~~~~~~----------~~~i~iwd~ 162 (1324)
.+.+.|..+. ....+. .++....+.++|||..+.+ +.. ++.|.+.|.
T Consensus 227 ~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV-~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL-LTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE-EeccCCcccccCCCCeEEEEEC
Confidence 2333343211 111111 1122334678888887776 432 357888888
Q ss_pred ccC---------CCeeEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCc
Q psy12365 163 LTY---------TLGERISWSDDGQ-LLAVTT-SGGSVKIYLSKLPK 198 (1324)
Q Consensus 163 ~~~---------~~i~~~~~s~~~~-~l~~~~-~dg~i~~~~~~~~~ 198 (1324)
.+. ...+.+.|+|||+ .++++. .++.|.+||.....
T Consensus 306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 306 LVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 743 4578899999999 677766 48899999986544
No 325
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.52 E-value=4.9e-06 Score=96.11 Aligned_cols=179 Identities=11% Similarity=-0.030 Sum_probs=125.8
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCC--eEEEEEcCCCeEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS--AVNVWNTYTKKRT 90 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~--~i~iw~~~~~~~~ 90 (1324)
..+..++|+| +|+++++...++.|++||.++..+..+. ...... ++|+|+++.++++.. ++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~-~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW-EGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS-STTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec-CCCceEEEEEcCCCcee
Confidence 4688999999 9997777777789999999765555544 333334 999999998888876 44 8999998765433
Q ss_pred EEe----cCCCCCceEEEEec-CCCEEEE----EEEEEeCCCCeEEEE----e--cCCcE--EEEEEcCCCCEEEEEEcC
Q psy12365 91 IVD----SGLRDPLTCLVWCK-QCSMLQL----SVSIYNKHGKLIDKI----T--LPGLC--IVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 91 ~~~----~~~~~~v~~~~~s~-~~~~l~~----~i~v~d~~g~~~~~~----~--~~~~i--~~~~~~~~g~~l~~~~~~ 153 (1324)
... ......+.+++++| +|.++++ .|..||..+.....+ . ..+.. ..++|+|++..|.++...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 232 22445678999999 4555555 799999875544444 1 11112 289999964444442777
Q ss_pred CCcEEEeecccC-----------------------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy12365 154 SSAVNVWTLLTY-----------------------TLGERISWSDDGQLLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 154 ~~~i~iwd~~~~-----------------------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~ 195 (1324)
++.|..|+.+.. ..+..++++|+|.++++-+ .++.|+.|+..
T Consensus 288 ~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 288 LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 888999887621 2378899999999666666 67888888853
No 326
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.2e-06 Score=103.37 Aligned_cols=220 Identities=12% Similarity=0.025 Sum_probs=146.5
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChH--------HHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHc
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPT--------MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMT 761 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--------~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1324)
|...+..|.-+...|+|++|++.|.++.+.. .....+...+..+ .+...+|.+|...
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE---------------TSILELGQLYVTM 68 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH---------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH---------------HHHHHHHHHHHHC
Confidence 4445566777888899999998886531100 0000011111112 3457889999999
Q ss_pred CCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHH
Q psy12365 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQ 830 (1324)
Q Consensus 762 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~ 830 (1324)
|++++|+++|++++...+... ........+..++.++...|++++|++++++... ..++..+|.++..
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFA-KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSC-HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999987765411 1112334555677788889999999988876522 5678899999999
Q ss_pred ccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHH
Q psy12365 831 FNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 910 (1324)
Q Consensus 831 ~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~ 910 (1324)
.|+|++|..+++++... ....+ .+.....++...+.++...|++++|..+|.++. .+..
T Consensus 148 ~g~~~~A~~~l~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al------~~~~ 206 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLRE------FKKLD---------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR------TAAN 206 (434)
T ss_dssp HTCHHHHHHHHHHHHHH------HTTSS---------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHH
T ss_pred ccChHHHHHHHHHHHHH------HHhcc---------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH------HHhh
Confidence 99999999998775421 11111 011134567778999999999999999999954 3333
Q ss_pred hccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 911 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 911 ~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
.....+..... ....+|.++...|+|++|..+|.++
T Consensus 207 ~~~~~~~~~~~---------~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 207 SIYCPTQTVAE---------LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HSCCCHHHHHH---------HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cCCCchHHHHH---------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 32222221112 2457888999999999999988766
No 327
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.50 E-value=6.8e-06 Score=91.17 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=119.0
Q ss_pred CCeeEEEEecCCCC-EEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 14 PGDVYVCWQRRTGE-LLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
.......|+| +|+ ++.+...++.|..|+.+|+. ..+. ..+.+.+++|+++|+.+++ ...++.|.+|+.. ++...
T Consensus 45 ~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~-~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 45 TWSEGPAWWE-AQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHC-EHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp SSEEEEEEEG-GGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEE-ETTTTEEEEECTT-SCEEE
T ss_pred cCccCCeEeC-CCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEE-ECCCCEEEEECCC-CCEEE
Confidence 4567899999 998 45555567899999997764 3444 5677899999999985554 4336789999987 44433
Q ss_pred EecCC----CCCceEEEEecCCCEEEE----------------------EEEEEeCC-CCeEEEEecCCcEEEEEEcCCC
Q psy12365 92 VDSGL----RDPLTCLVWCKQCSMLQL----------------------SVSIYNKH-GKLIDKITLPGLCIVMDWDSEG 144 (1324)
Q Consensus 92 ~~~~~----~~~v~~~~~s~~~~~l~~----------------------~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g 144 (1324)
..... ...+..+.++|+|.+.++ .|..||.. |+..... .......++|+|||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg 199 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDE 199 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTS
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCC
Confidence 32111 134678999999998872 46677764 5443332 33456789999999
Q ss_pred CEEEEEEcCC------CcEEEeecccC-------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 145 DLLGIISSNS------SAVNVWTLLTY-------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 145 ~~l~~~~~~~------~~i~iwd~~~~-------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
+.+++ +... +.|..|++... ..+..+.++++|+ |.+++.+ .|.+|+...
T Consensus 200 ~~lyv-~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 200 QTLYV-SQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG 267 (305)
T ss_dssp SEEEE-EECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTTS
T ss_pred CEEEE-EecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCCC
Confidence 98877 5443 68888887521 2334678888988 4445544 477777643
No 328
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=4.3e-07 Score=99.28 Aligned_cols=101 Identities=9% Similarity=-0.093 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|++++|+..|.++.. .... ....+..+|.++..+|++++|+..|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al--------- 65 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT--------RNPL-VAVYYTNRALCYLKMQQPEQALADCRRAL--------- 65 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------
Confidence 45667777777777777777777765422 1112 34455677777777777777777665533
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
...++...++..+|.++...|++++|+..|++++..+|+
T Consensus 66 ---------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 66 ---------------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp ---------------TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 123444566777777777777777777777777776664
No 329
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.49 E-value=9.7e-06 Score=90.50 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=124.4
Q ss_pred CCeeEEEEecCCCCEEEE-------EeCCCcEEEEEC-CCcEEEEEe------CCCCEEEEEEcCC-CCEEEEEEcCCCe
Q psy12365 14 PGDVYVCWQRRTGELLAT-------TGRDSSVSIYNK-HGKLIDKIT------LPGLCIVMDWDSE-GDLLGIISSNSSA 78 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~-------~~~~~~v~v~~~-~~~~~~~~~------~~~~i~~i~~~~d-~~~l~~~~~~d~~ 78 (1324)
..+.+++|++ +|.++++ ...++.|.+||. +++.. .+. +...+.++.++++ |. +.++.. .+.
T Consensus 18 ~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~ 93 (314)
T 1pjx_A 18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLG 93 (314)
T ss_dssp TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEET-TTE
T ss_pred CCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCC
Confidence 4578999999 9988877 466788999996 55543 333 2356899999999 65 444444 457
Q ss_pred EEEEEcCCCeEEEE-ecCC----CCCceEEEEecCCCEEEE---E-----------------EEEEeCCCCeEEEEecCC
Q psy12365 79 VNVWNTYTKKRTIV-DSGL----RDPLTCLVWCKQCSMLQL---S-----------------VSIYNKHGKLIDKITLPG 133 (1324)
Q Consensus 79 i~iw~~~~~~~~~~-~~~~----~~~v~~~~~s~~~~~l~~---~-----------------i~v~d~~g~~~~~~~~~~ 133 (1324)
|.+||.. ++.... .... ...+.++.++|+|.+.++ . |..||.+++.........
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 172 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ 172 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCC
Confidence 9999988 665443 2211 234789999999987766 2 444555565544434445
Q ss_pred cEEEEEEc----CCCCEEEEEEcCCCcEEEeecc-cC----------------CCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy12365 134 LCIVMDWD----SEGDLLGIISSNSSAVNVWTLL-TY----------------TLGERISWSDDGQLLAVTTSGGSVKIY 192 (1324)
Q Consensus 134 ~i~~~~~~----~~g~~l~~~~~~~~~i~iwd~~-~~----------------~~i~~~~~s~~~~~l~~~~~dg~i~~~ 192 (1324)
....++|+ |+|+.+.+..+.++.|.+|+.. +. ..+..++++++|.+.++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 9997665525677899999854 11 236778999999888777778889888
Q ss_pred EcC
Q psy12365 193 LSK 195 (1324)
Q Consensus 193 ~~~ 195 (1324)
+..
T Consensus 253 d~~ 255 (314)
T 1pjx_A 253 GPD 255 (314)
T ss_dssp CTT
T ss_pred cCC
Confidence 765
No 330
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=4.5e-07 Score=95.88 Aligned_cols=157 Identities=11% Similarity=0.060 Sum_probs=124.5
Q ss_pred CCCchHHHHHH-------HHHHHHcCCHHHHHHHHHHhcccCCCCCCChh--------------hHHhhhchHHHHHHhc
Q psy12365 744 SNQTPIISCDY-------AQQLEMTGQHAQALSFYQKSMELATPDIQDPE--------------CQRKCKEGIARTSIRV 802 (1324)
Q Consensus 744 ~~~~~~~~~~~-------~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------------~~~~~~~~la~~~~~~ 802 (1324)
.+.....+..+ +.++...+++.+|+..+++.+...|......- .-.......+.++...
T Consensus 36 dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~ 115 (282)
T 4f3v_A 36 DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQ 115 (282)
T ss_dssp CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHC
Confidence 45667777777 78999999999999999999998775110000 0011223368899999
Q ss_pred CCHHHHHHHHHhcCC----hHHHHHHHHHHHHccCHHHHHHHHHHhcC----------HHHHHHHHHHcCCHHHHHhhhh
Q psy12365 803 GDFRLGIRLAAESNS----SVLKNECADILQQFNKLNDAVTLYESAGN----------YEKAATCYIQLKNWTKIGQLLP 868 (1324)
Q Consensus 803 g~~~~A~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~y~~~~~----------~~~~~~~~~~~~~~~~A~~~~~ 868 (1324)
|+|++|.+++..... ....+.+|.++...|+|++|+.+|+++.. +..++.++..+|++++|+..++
T Consensus 116 g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 116 GNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp TCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998854 23889999999999999999999998875 2344578899999999999998
Q ss_pred ccC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 869 HIK--------SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 869 ~~~--------~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+.. .+.+.+.+|.++..+|+.++|...|+++.
T Consensus 196 ~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 196 EANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 773 23478889999999999999999999843
No 331
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.46 E-value=6.8e-07 Score=84.93 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHHHHH
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVLKNE 823 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~~~ 823 (1324)
.++..+|..+...|++++|+.+|++++...|. +...+..++.++...|++++|+++++++. . ..++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 35678899999999999999999999998886 34566678999999999999999888762 2 677888
Q ss_pred HHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 824 CADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 824 l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+|.++...|++++|..+|+++... ......++..+|.++...|++++|+..|.++.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALEL---------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh---------------------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999888776421 01145667788999999999999999998854
No 332
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.46 E-value=1.2e-06 Score=109.55 Aligned_cols=178 Identities=9% Similarity=0.030 Sum_probs=117.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeC-----CCcEEEEECC-CcEEEEEeCCC-CEEEEEEcCCCCEEEEEEcCCC------
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGR-----DSSVSIYNKH-GKLIDKITLPG-LCIVMDWDSEGDLLGIISSNSS------ 77 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~-----~~~v~v~~~~-~~~~~~~~~~~-~i~~i~~~~d~~~l~~~~~~d~------ 77 (1324)
+|...+..++||| ||++||.+.+ ...|++||+. |+.+.. ..++ ....++|+ ||+.|+.+.. +.
T Consensus 126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~-~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSY-DKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEES-SCCC----
T ss_pred CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEe-cCcccccc
Confidence 4556788999999 9999997542 2469999984 554432 2111 13577899 9999999886 42
Q ss_pred -------eEEEEEcCCCeE--EEEecC---CCCCceEEEEecCCCEEEE---------EEEEEeCCCC--eEEEEe-cCC
Q psy12365 78 -------AVNVWNTYTKKR--TIVDSG---LRDPLTCLVWCKQCSMLQL---------SVSIYNKHGK--LIDKIT-LPG 133 (1324)
Q Consensus 78 -------~i~iw~~~~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g~--~~~~~~-~~~ 133 (1324)
.|++|++.++.. ..++.. +......+.|||||++|++ .|+++|..+. ....+. ...
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 499999876542 333332 3445788999999998865 7888997632 334444 333
Q ss_pred cEEEEEEcCCCCEEEEEEcCC---CcEEEeecccC------------CCeeEEEEcCCCCEEEEEeC-CC--cEEEEEcC
Q psy12365 134 LCIVMDWDSEGDLLGIISSNS---SAVNVWTLLTY------------TLGERISWSDDGQLLAVTTS-GG--SVKIYLSK 195 (1324)
Q Consensus 134 ~i~~~~~~~~g~~l~~~~~~~---~~i~iwd~~~~------------~~i~~~~~s~~~~~l~~~~~-dg--~i~~~~~~ 195 (1324)
..... |+++|..|++.+..+ +.|..+++.+. ..+. .|+++++.|++... +| .|++|+..
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 34444 778888777634433 56777877631 1222 88899988876654 44 45666554
No 333
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.45 E-value=1e-05 Score=90.28 Aligned_cols=180 Identities=16% Similarity=0.115 Sum_probs=123.3
Q ss_pred CCCCeeEEEEecCC-CCEEEEEeCCCcEEEEECCCcEEEE-EeC-----CCCEEEEEEcCCCCEEEEEEcCC--------
Q psy12365 12 HGPGDVYVCWQRRT-GELLATTGRDSSVSIYNKHGKLIDK-ITL-----PGLCIVMDWDSEGDLLGIISSNS-------- 76 (1324)
Q Consensus 12 h~~~i~~~~~sp~~-g~~l~~~~~~~~v~v~~~~~~~~~~-~~~-----~~~i~~i~~~~d~~~l~~~~~~d-------- 76 (1324)
+...+.++.++| + |+++++ +..+.|.+||.+|+.... ... ...+.+++++|+|..+++... +
T Consensus 69 ~~~~~~~i~~~~-~~g~l~v~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDR-DANQLFVA-DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECS-SSSEEEEE-ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCC
T ss_pred CCCCCceEEEec-CCCcEEEE-ECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecC-ccccccccc
Confidence 446788999999 8 765554 444479999988654322 221 134789999999987766544 4
Q ss_pred -------CeEEEEEcCCCeEEEEecCCCCCceEEEEe----cCCCEEEE------EEEEEeCC--CCeEE--EE-ecC--
Q psy12365 77 -------SAVNVWNTYTKKRTIVDSGLRDPLTCLVWC----KQCSMLQL------SVSIYNKH--GKLID--KI-TLP-- 132 (1324)
Q Consensus 77 -------~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~------~i~v~d~~--g~~~~--~~-~~~-- 132 (1324)
+.|..|+.. ++..... .+......++|+ |+|+.+.+ .|.+||.+ |+... .+ ...
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred ccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777766 5444332 233446889999 99975544 79999864 43211 11 112
Q ss_pred --CcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q psy12365 133 --GLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWSDDGQLLAVTT-SGGSVKIYLSKLP 197 (1324)
Q Consensus 133 --~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~ 197 (1324)
+.+..++++++|+++++ ...++.|.+||.++. ..+.+++|+|+|+.|.+++ .++.|..|+...+
T Consensus 224 ~~~~p~~i~~d~~G~l~v~-~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVA-NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEE-EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCCceEECCCCCEEEE-EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 56788999999998877 667889999998721 4678899999999666655 4578888887643
No 334
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=6.4e-07 Score=84.18 Aligned_cols=94 Identities=10% Similarity=0.012 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHH
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKN 822 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~ 822 (1324)
+..+..+|..+...|+|++|+..|++++..+|. +...+..+|.++.+.|++++|++.++++ ++ ..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 456788999999999999999999999999997 5677788999999999999999998887 22 78999
Q ss_pred HHHHHHHHccCHHHHHHHHHHhcCHH
Q psy12365 823 ECADILQQFNKLNDAVTLYESAGNYE 848 (1324)
Q Consensus 823 ~l~~~~~~~g~~~~A~~~y~~~~~~~ 848 (1324)
.+|.++..+|++++|+..|+++....
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999887543
No 335
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=7.9e-07 Score=85.86 Aligned_cols=95 Identities=9% Similarity=-0.039 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 872 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 951 (1324)
Q Consensus 872 ~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~ 951 (1324)
+...++.+|..+...|++++|+..|.++.. + .+.+..+...+|.++..+|+|++|+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------~----------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------Y----------------DFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------H----------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------h----------------CCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 456888899999999999999999998431 1 124556678899999999999999999
Q ss_pred HHHcCCHHHHHHHHHhccchhHhhhhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 952 LILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 952 ~~~~~~~~~A~~l~~~~~~~~~~~~~l~l~-~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
|.++ +. .|.++..++.+|.+|...|++.+|...|.++
T Consensus 93 ~~~a------------------------l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 93 YAVA------------------------FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHH------------------------HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH------------------------HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988 32 6678899999999888888887777777664
No 336
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.43 E-value=1.5e-05 Score=91.96 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=120.5
Q ss_pred EEEecCCCCEEEEEeCCC--cEEEEECCCc-EEEEE----e-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 19 VCWQRRTGELLATTGRDS--SVSIYNKHGK-LIDKI----T-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 19 ~~~sp~~g~~l~~~~~~~--~v~v~~~~~~-~~~~~----~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
++|+| +|+.|++++.++ .|.+|+..+. ....+ . ....+.+++++|++..|.++.. ++.|+.||..++...
T Consensus 176 ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~ 253 (409)
T 3hrp_A 176 PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVT 253 (409)
T ss_dssp CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEE
T ss_pred eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEE
Confidence 89999 999988888765 7888887433 23333 2 3356788999996556666554 789999999877654
Q ss_pred EE----ecCCCCCc-e-EEEEecC-CCEEEE-----EEEEEeCCCCeEEEEecC---------------CcEEEEEEcCC
Q psy12365 91 IV----DSGLRDPL-T-CLVWCKQ-CSMLQL-----SVSIYNKHGKLIDKITLP---------------GLCIVMDWDSE 143 (1324)
Q Consensus 91 ~~----~~~~~~~v-~-~~~~s~~-~~~l~~-----~i~v~d~~g~~~~~~~~~---------------~~i~~~~~~~~ 143 (1324)
.. ..++.... . .++|+|+ +.++++ .|..|+.+|......... .....++++|+
T Consensus 254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 33 22222222 3 9999996 555555 899999888743333222 24788999999
Q ss_pred CCEEEEEEc-CCCcEEEeecccC------------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 144 GDLLGIISS-NSSAVNVWTLLTY------------------------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 144 g~~l~~~~~-~~~~i~iwd~~~~------------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
|+++++ -+ .++.|+.|+..+. ..+..++++++|.++++-..++.|+.+++
T Consensus 334 G~lyva-d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GNFYIV-DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCEEEE-ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEE-eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 997666 77 7889999994311 24778999999877666666777776553
No 337
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.43 E-value=6.5e-05 Score=82.97 Aligned_cols=177 Identities=8% Similarity=0.001 Sum_probs=129.7
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
+...+..+.+++ +|.+.++...++.|..||.+|+. ..+. ....+.+++++++|..+++... ++.|..|+.. ++
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLN-GDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT-SC
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCCCCe-EEecCCCCCCCCccceECCCCCEEEEccC-CCeEEEECCC-CC
Confidence 346788999999 99988776667889999988665 3444 2357899999999987666544 7889999988 55
Q ss_pred EEEE-ecCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe---cCCcEEEEEEcCCCCEEEEEEcCCCcEEE
Q psy12365 89 RTIV-DSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNV 159 (1324)
Q Consensus 89 ~~~~-~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~---~~~~i~~~~~~~~g~~l~~~~~~~~~i~i 159 (1324)
.... .......+..+.+.++|.+.++ .|..||..++... +. ....+..+.++++|.+.++ ....+.|..
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~i~~ 213 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEE-YPLPTNAAAPVGITSGNDGALWFV-EIMGNKIGR 213 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETTTTEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEE-eeCCCCCCCcceEEECCCCCEEEE-ccCCCEEEE
Confidence 4433 2334456899999999986665 7889998766554 33 2346889999999987776 666778888
Q ss_pred eeccc----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 160 WTLLT----------YTLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 160 wd~~~----------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
|+... ...+..+.++++|.+.++...++.|..|+.
T Consensus 214 ~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 214 ITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 88741 145778999999985555545677887775
No 338
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.42 E-value=5.5e-05 Score=83.58 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=129.8
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC---CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~---~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
.....+.++.+.+ +|.+.++...++.|.+||.+++.. .+.. ...+.+++++++|..+++... ++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQSGRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENG-ANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEE-EEECSSTTCCEEEEEECTTSCEEEEETT-TTEEEEECTT-S
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCCCceE-EEECCCCCCcceeEEECCCCCEEEEecC-CCeEEEECCC-C
Confidence 3456789999999 999887776788999999885543 3442 357899999999986665544 7889999988 5
Q ss_pred eEEEEe-cCCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEE
Q psy12365 88 KRTIVD-SGLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNV 159 (1324)
Q Consensus 88 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~i 159 (1324)
+..... ......+.++++.++|.++++ .|..||..|+...... ....+..++++++|++.++ ...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFT-ENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEE-ETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEE-ecCCCeEEE
Confidence 443332 223466899999999987776 7888998866543211 2356889999999996666 666778888
Q ss_pred eecccC----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 160 WTLLTY----------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 160 wd~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
++.... ..+..+.++++|.+.++....+.|..|+.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 172 ITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp ECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred ECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 876411 35778889998876665555667777765
No 339
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=1.3e-06 Score=86.62 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHH
Q psy12365 648 ETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRR 727 (1324)
Q Consensus 648 ~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~ 727 (1324)
..|..+|..+...|+++.|+..|.++... ... ....+..+|.++...|++++|+..|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------- 73 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPS-NAIYYGNRSLAYLRTECYGYALGDATRA----------- 73 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH-----------
Confidence 34566666666666666666665544211 111 2334455566666666666665544331
Q ss_pred HHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 728 DLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 728 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
+.. .+....++..+|.++...|++++|+.+|++++...|.
T Consensus 74 --------~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 74 --------IEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp --------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --------HHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 111 1233445566666666666666666666666665554
No 340
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.42 E-value=3.3e-06 Score=105.93 Aligned_cols=175 Identities=7% Similarity=-0.124 Sum_probs=119.0
Q ss_pred eEEEEecCCCCEEEEEeCCCc-------------EEEEECCCcE---EEEEe---CCCCEEEEEEcCCCCEEEEEEcCCC
Q psy12365 17 VYVCWQRRTGELLATTGRDSS-------------VSIYNKHGKL---IDKIT---LPGLCIVMDWDSEGDLLGIISSNSS 77 (1324)
Q Consensus 17 ~~~~~sp~~g~~l~~~~~~~~-------------v~v~~~~~~~---~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~ 77 (1324)
..++|+| ||+.|++++.+.. |++|++.+.. ...+. +...+.++.|||||++|++++. ++
T Consensus 171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~-~~ 248 (695)
T 2bkl_A 171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL-RG 248 (695)
T ss_dssp CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE-ET
T ss_pred cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe-CC
Confidence 6899999 9999999988766 9999984322 22222 3357889999999999988876 44
Q ss_pred ----eEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE--------EEEEEeCCCCe----EEEEec--CCcEEEEE
Q psy12365 78 ----AVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL--------SVSIYNKHGKL----IDKITL--PGLCIVMD 139 (1324)
Q Consensus 78 ----~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~~----~~~~~~--~~~i~~~~ 139 (1324)
.|++|+..++....+. .+.+.+....| ++|.+++. .|.+||..+.. ...+.+ ...+..++
T Consensus 249 ~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFRLLV-KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEE-ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred CCceEEEEEcCCCCceEEee-cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence 6777776556555443 45555667767 56664333 78999986322 233333 34578888
Q ss_pred EcCCCCEEEEEEcCCCcEEEeecc-cC-----------CCeeEEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q psy12365 140 WDSEGDLLGIISSNSSAVNVWTLL-TY-----------TLGERISWSDDGQLLAVTTS----GGSVKIYLSKLP 197 (1324)
Q Consensus 140 ~~~~g~~l~~~~~~~~~i~iwd~~-~~-----------~~i~~~~~s~~~~~l~~~~~----dg~i~~~~~~~~ 197 (1324)
|+ ++.++++ ...++..+||..+ .. ..+..+.++|+++.+++... .+.+++|++...
T Consensus 327 ~~-~~~lv~~-~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 327 IV-GGHLSLE-YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EE-TTEEEEE-EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EE-CCEEEEE-EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 88 5666666 8888888887554 11 34566788899987775433 367888887553
No 341
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=7.5e-07 Score=88.48 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=95.5
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|.++...|++++|...|.++. .. .+....++..+|.++...|++++|+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-------------------~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~ 68 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAI-------------------EL-----NPSNAIYYGNRSLAYLRTECYGYALG 68 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HH-----STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-------------------Hh-----CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 3456778888888899998888775532 11 23446778899999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHHH--HHHHHHHHHccCHHHHHHHHH
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVLK--NECADILQQFNKLNDAVTLYE 842 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~~--~~l~~~~~~~g~~~~A~~~y~ 842 (1324)
+|++++...|. +...+..+|.++.+.|++++|++.+++.. . ..++ ...+..+...|++++|+..|+
T Consensus 69 ~~~~a~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 69 DATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999886 45566778999999999999999887762 2 4455 344455778888888888887
Q ss_pred Hhc
Q psy12365 843 SAG 845 (1324)
Q Consensus 843 ~~~ 845 (1324)
+..
T Consensus 142 ~~~ 144 (166)
T 1a17_A 142 HKR 144 (166)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 342
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.40 E-value=2.6e-05 Score=86.02 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=113.2
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CC-----CCEEEEEEcCCCCEEEEEEcC----------C
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LP-----GLCIVMDWDSEGDLLGIISSN----------S 76 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~-----~~i~~i~~~~d~~~l~~~~~~----------d 76 (1324)
...+.+++++| +|+++++ . ++.|.+||.++.....+. .. ..+.+++++|+|+++++.... .
T Consensus 53 ~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 53 DAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 45688999999 9996554 4 567999998654444433 21 347899999999966654321 1
Q ss_pred CeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCC---CCeE--EEEe----cCCcEEEEEEc
Q psy12365 77 SAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH---GKLI--DKIT----LPGLCIVMDWD 141 (1324)
Q Consensus 77 ~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~---g~~~--~~~~----~~~~i~~~~~~ 141 (1324)
+.|+.++.. ++..... ........++|+|+++.+.+ .|..|+.+ |... ..+. ..+....++++
T Consensus 130 ~~l~~~d~~-g~~~~~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 130 GALYSLFPD-HHVKKYF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEEEECTT-SCEEEEE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred cEEEEEECC-CCEEEEe-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 344444443 3333332 23344689999999987755 78999853 4432 1121 23567889999
Q ss_pred CCCCEEEEEEcCCCcEEEeecccC----------CCeeEEEEc-CCCCEEEEEeCC
Q psy12365 142 SEGDLLGIISSNSSAVNVWTLLTY----------TLGERISWS-DDGQLLAVTTSG 186 (1324)
Q Consensus 142 ~~g~~l~~~~~~~~~i~iwd~~~~----------~~i~~~~~s-~~~~~l~~~~~d 186 (1324)
++|++.+. ....+.|..||..+. ..+++++|. ||++.|++++..
T Consensus 208 ~~G~lwva-~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 208 AEGKLWVA-CYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TTSCEEEE-EETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCEEEE-EcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99987777 667788999998632 468889998 888888776653
No 343
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=1.3e-06 Score=84.67 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
+.....+..+|..+...|+|++|+..|++++..+|. +...+..+|.++...|++++|++.++++ |+ ..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 334567788999999999999999999999999997 5666778999999999999999999886 33 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+++.+|.++..+|++++|+..|+++..
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999988864
No 344
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.38 E-value=6.1e-06 Score=86.37 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=122.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHHHHHHH-hCChh----hHHHHHHHHHhhc
Q psy12365 1093 VARDEAARGSYRNCHETLYSTIQELKKHKLQ---VGNDLMAGLMIIHSYLLARYHVR-NANHS----LAAPLLIRVAENI 1164 (1324)
Q Consensus 1093 ~a~~~~~~g~~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~y~l~~~~~~-~g~~~----~A~~~l~~~~~~~ 1164 (1324)
.|......|.+.+|.+.+.+....+.-.-.. ..++..+.+.+...|++|....- ..... +-.+..++++.|.
T Consensus 108 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYF 187 (320)
T 3mkr_B 108 LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYF 187 (320)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHh
Confidence 3444667889999999998887765432211 23456677778889998855432 22221 2234466777774
Q ss_pred cCC---CcchhHHHHHHHHHHHHhcChHHHHHHHHHhcChhhhhhccHHHhHHHHHHhcCCCCCCCCCCCccCCCCCCCC
Q psy12365 1165 SFF---PLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNLEDKYRKQIELIVRKAPRKDIASPEEAHVLPCPYC 1241 (1324)
Q Consensus 1165 ~~~---p~~~~~~l~~~~~~~~~~~~~~~A~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c 1241 (1324)
-.. |.|....|..|+..+.+.++...|-.||+||+++.-. ++...+..++...+.+++.++. +.
T Consensus 188 T~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~----~~~~~qArkil~~ce~~~~da~-ei-------- 254 (320)
T 3mkr_B 188 THSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK----PEVAQQTRKILSACEKNPTDAY-QL-------- 254 (320)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC----HHHHHHHHHHHHHHHHSCCBSS-CC--------
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHhcCCCCcc-cc--------
Confidence 333 9999999999999999999999999999999975222 3333334444333311122222 11
Q ss_pred CCcccccccccccccCCCcceeecCcccc-ccCcccCCCCCcccchHHHHHHHhcCCCCCCccc
Q psy12365 1242 DTMVPDMMLHCASCARIIPFCIASGKHIT-RNELTKCLECNFPAIHRHLVLIVDQEGFCPLCRT 1304 (1324)
Q Consensus 1242 ~~~~~~~~~~c~~c~~~~~~c~~tg~~i~-~~~~~~C~~c~~~a~~~~~~~~~~~~~~Cp~C~~ 1304 (1324)
.. .-.++|.+|.+|-.||. ..+...||.||.....++ ++..||.|+-
T Consensus 255 ---------dy-D~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 302 (320)
T 3mkr_B 255 ---------NY-DMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTV 302 (320)
T ss_dssp ---------SC-CTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSS
T ss_pred ---------CC-CCCCccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 00 01367899999999998 467889999999888876 7889999976
No 345
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.6e-05 Score=76.14 Aligned_cols=118 Identities=8% Similarity=0.101 Sum_probs=91.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHH
Q psy12365 797 RTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTF 876 (1324)
Q Consensus 797 ~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 876 (1324)
......|+++.|.+++++..+...|..+|+.....|+++-|...|.+++++.++.-+|...|+-++-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~k----------- 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSK----------- 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH-----------
T ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH-----------
Confidence 455689999999999999988999999999999999999999999999999999999998887765553
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy12365 877 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK 956 (1324)
Q Consensus 877 ~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~ 956 (1324)
+++.-...|++.-|...|-. +|++++++++|.+.+
T Consensus 82 --la~iA~~~g~~n~af~~~l~-------------------------------------------lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 --MQNIAQTREDFGSMLLNTFY-------------------------------------------NNSTKERSSIFAEGG 116 (177)
T ss_dssp --HHHHHHHTTCHHHHHHHHHH-------------------------------------------HTCHHHHHHHHHHTT
T ss_pred --HHHHHHHCccHHHHHHHHHH-------------------------------------------cCCHHHHHHHHHHCC
Confidence 34555566666665555444 555666666666666
Q ss_pred CHHHHHHHHHhccc
Q psy12365 957 CYQDAFNLSQQHKK 970 (1324)
Q Consensus 957 ~~~~A~~l~~~~~~ 970 (1324)
++++|..+++.++.
T Consensus 117 r~~eA~~~A~t~g~ 130 (177)
T 3mkq_B 117 SLPLAYAVAKANGD 130 (177)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCc
Confidence 66666666665554
No 346
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.37 E-value=2.1e-06 Score=89.58 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHH
Q psy12365 649 TWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRD 728 (1324)
Q Consensus 649 ~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~ 728 (1324)
.+..+|..+...|+++.|+..|.++.+. ....+..+|.++...|++++|+..|.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------ 63 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP------------HSRICFNIGCMYTILKNMTEAEKAFTRS------------ 63 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 4678899999999999999999877422 2456788999999999999999977553
Q ss_pred HhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC---------CChhhHHhhhchHHHHH
Q psy12365 729 LRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDI---------QDPECQRKCKEGIARTS 799 (1324)
Q Consensus 729 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~---------~~~~~~~~~~~~la~~~ 799 (1324)
+.. .+....++..+|.++...|++++|++.|++++...|... .........+..+|.++
T Consensus 64 -------l~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 64 -------INR-----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp -------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred -------HHh-----CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 221 245577889999999999999999999999999887621 00011346677899999
Q ss_pred HhcCCHHHHHHHHHhcCC
Q psy12365 800 IRVGDFRLGIRLAAESNS 817 (1324)
Q Consensus 800 ~~~g~~~~A~~~~~~~~~ 817 (1324)
.+.|++++|++.++++..
T Consensus 132 ~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999988733
No 347
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=1.2e-06 Score=82.12 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..+..+|.++...|+|++|+..|.+ |+.+ .|....++..+|.++..+|+|++|++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~-------------------Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDK-------------------AIEL-----DPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 3456789999999999999998755 3322 345577899999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
|++++...|...........++..+|.++...|++++|++.+++.
T Consensus 65 ~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999877522222233456778999999999999999998876
No 348
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=9.7e-07 Score=99.26 Aligned_cols=138 Identities=16% Similarity=0.037 Sum_probs=102.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHh--hHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLR--QWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQA 767 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~--~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 767 (1324)
...+..+|.++...|++++|+..|.++. .+.-... ..+++... .+....++..+|.++...|+|++|
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al------~~~p~~~~~~~~~~~~~-----~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIV------SWLEYESSFSNEEAQKA-----QALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHTTTCCCCCSHHHHHH-----HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHhhccccCChHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456778999999999999999886532 1100000 00000000 001147889999999999999999
Q ss_pred HHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHH-HHHH
Q psy12365 768 LSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDA-VTLY 841 (1324)
Q Consensus 768 ~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A-~~~y 841 (1324)
+.+|++++..+|. +..++..+|.+|..+|++++|++.++++ ++ ..++..+|.++..+|++++| ..+|
T Consensus 216 ~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~ 288 (336)
T 1p5q_A 216 IESCNKALELDSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288 (336)
T ss_dssp HHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 5667778999999999999999998887 22 78899999999999999998 4466
Q ss_pred HHhc
Q psy12365 842 ESAG 845 (1324)
Q Consensus 842 ~~~~ 845 (1324)
+++.
T Consensus 289 ~~~~ 292 (336)
T 1p5q_A 289 ANMF 292 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 349
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.34 E-value=1.9e-06 Score=81.55 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=82.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
+.....+..+|..+...|++++|+..|++++...|. +...+..+|.++...|++++|++.++++ ++ ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 445678899999999999999999999999999886 4566778999999999999999988876 22 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
++..+|.++...|++++|..+|+++..
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 899999999999999999999988753
No 350
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=2e-06 Score=84.82 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=101.8
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcC-CCCchHHHHHHHHHHHHcCCHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLG-SNQTPIISCDYAQQLEMTGQHAQAL 768 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~ 768 (1324)
...+..+|.++...|++++|+..|.+ |+.++.... +.....++..+|..+...|++++|+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQ-------------------RLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34567889999999999999997755 333333211 1222357788999999999999999
Q ss_pred HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHH
Q psy12365 769 SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDA 837 (1324)
Q Consensus 769 ~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A 837 (1324)
++|++++...+... ++......+..++.++...|++++|++++++... ..++..+|.++...|++++|
T Consensus 70 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 70 EYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 99999987654310 1233356677889999999999999988877632 45677888899999999999
Q ss_pred HHHHHHhcC
Q psy12365 838 VTLYESAGN 846 (1324)
Q Consensus 838 ~~~y~~~~~ 846 (1324)
..+|+++.+
T Consensus 149 ~~~~~~a~~ 157 (164)
T 3ro3_A 149 MHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887753
No 351
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=1.9e-06 Score=82.84 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLK 821 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~ 821 (1324)
....+..+|..+...|+|++|+..|++++..+|. +...+..+|.++.+.|++++|++.++++ ++ ..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3466788999999999999999999999999997 5666778999999999999999998886 22 7889
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
..+|.++..+|++++|+..|+++..
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 352
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.32 E-value=5.9e-06 Score=92.69 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=96.3
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCC-cEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHG-KLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~-~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
.+.. |..++| |+++|+++ .++.|++||... ....... +...+.++.|.+.. ++++.. ||.+.+||+.++.
T Consensus 86 ~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~-dG~L~v~dl~~~~ 157 (388)
T 1xip_A 86 EIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNS-VNDLSALDLRTKS 157 (388)
T ss_dssp ECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEET-TSEEEEEETTTCC
T ss_pred eCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEEC-CCCEEEEEccCCc
Confidence 3556 999999 67888888 789999999732 2222233 66678888877643 788877 9999999998776
Q ss_pred EEEEecCCCCCceEEEEecCCCEEEE---EEEEEeCCCCe---EEEE------e----cCCcEEEEEEcCCCCEEEE
Q psy12365 89 RTIVDSGLRDPLTCLVWCKQCSMLQL---SVSIYNKHGKL---IDKI------T----LPGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~---~i~v~d~~g~~---~~~~------~----~~~~i~~~~~~~~g~~l~~ 149 (1324)
... +...|++++|||+|..+.. ++++|+..+.. ...+ . ++..|.++.|.+++.++++
T Consensus 158 ~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 158 TKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEE----EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 654 3357999999999944434 89999988766 4455 1 5678999999999998887
No 353
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.5e-06 Score=86.12 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC----C-hHH
Q psy12365 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN----S-SVL 820 (1324)
Q Consensus 746 ~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~-~~~ 820 (1324)
.....+..+|..+...|+|++|+.+|++++..+|. +...+..++.+|.+.|++++|++.++++. + ..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 34577889999999999999999999999999997 56677789999999999999999988872 2 789
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 821 KNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+..+|.++..+|++++|+..|+++..
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 354
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=1.2e-05 Score=79.22 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=102.3
Q ss_pred hhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHH
Q psy12365 786 ECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----------SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCY 854 (1324)
Q Consensus 786 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~ 854 (1324)
......+..++.++...|++++|++.+++... ..++..+|..+..+|++++|..+|+++.....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----- 80 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR----- 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----
Confidence 33456667789999999999999998887633 24788899999999999999999888764221
Q ss_pred HHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHH
Q psy12365 855 IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 934 (1324)
Q Consensus 855 ~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 934 (1324)
..++... ...++..+|.++...|++++|++.|.+ ++.+... .+++... ......
T Consensus 81 -~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~~~-~~~~~~~---------~~~~~~ 134 (164)
T 3ro3_A 81 -QLKDRAV---------EAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQE-LKDRIGE---------GRACWS 134 (164)
T ss_dssp -HTTCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH-TTCHHHH---------HHHHHH
T ss_pred -HhCCcHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHH-ccchHhH---------HHHHHH
Confidence 1121110 134667789999999999999999998 4444443 2222211 233678
Q ss_pred HHHHHHHcCCHHHHHHHHHHc
Q psy12365 935 IADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 935 la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
+|.++...|++++|++++.++
T Consensus 135 la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999998876
No 355
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.30 E-value=3.6e-06 Score=98.30 Aligned_cols=142 Identities=8% Similarity=-0.050 Sum_probs=102.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhh-ccC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 823 ECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIK-SATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 823 ~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~~-~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
..+..+..+|+|++|+.+|+++.... .+++. .++ ....+..+|.+|..+|+|++|+.+|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~---------------~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-- 376 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQ---------------EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR-- 376 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH---------------TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH---------------HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--
Confidence 34456778899999988887765311 11111 111 345677799999999999999999999
Q ss_pred ChHHHHHHHHhccC--CHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhccchhHhhhhc
Q psy12365 901 DYDNVVRVDLDHLN--DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 978 (1324)
Q Consensus 901 ~~~~a~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~~~~~~~~~l 978 (1324)
++.+..+.++ .|+.|.. +.+||.+|..+|+|++|+.+|.++ ++.+...
T Consensus 377 ----aL~i~~~~lG~~Hp~~a~~----------l~nLa~~~~~~G~~~eA~~~~~~A---------------l~i~~~~- 426 (490)
T 3n71_A 377 ----MVDGYMKLYHHNNAQLGMA----------VMRAGLTNWHAGHIEVGHGMICKA---------------YAILLVT- 426 (490)
T ss_dssp ----HHHHHHHHSCTTCHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHH-
T ss_pred ----HHHHHHHHcCCCCHHHHHH----------HHHHHHHHHHCCCHHHHHHHHHHH---------------HHHHHHH-
Confidence 5556655444 5665555 578999999999999999999988 4444455
Q ss_pred cCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 979 LEE--DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 979 ~l~--~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
++ .|...+....++..+.+++.+.+|...|.++
T Consensus 427 -lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 427 -HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp -TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3345667778888888888888888888776
No 356
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.30 E-value=1.6e-05 Score=90.68 Aligned_cols=181 Identities=17% Similarity=0.134 Sum_probs=120.4
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEC-CCcEEEEEeCC--------CCEEEEEEcCCCCEEEEEEcC-CC
Q psy12365 18 YVCWQRRTGELLATTG----------RDSSVSIYNK-HGKLIDKITLP--------GLCIVMDWDSEGDLLGIISSN-SS 77 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~----------~~~~v~v~~~-~~~~~~~~~~~--------~~i~~i~~~~d~~~l~~~~~~-d~ 77 (1324)
.+.+|| ||+++.++. .++.|.++|. +++.+..+..+ .....+.++|||+++.++... ++
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 899999 999988876 3678999997 67777777643 345678999999999998753 57
Q ss_pred eEEEEEcCCCeEEEEecCCC-------CCceEEEEecCCCEEEE------------------------------------
Q psy12365 78 AVNVWNTYTKKRTIVDSGLR-------DPLTCLVWCKQCSMLQL------------------------------------ 114 (1324)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~------------------------------------ 114 (1324)
.|.+.|..+++....+.--. +....+.++++|+++.+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE
T ss_pred eEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE
Confidence 89999999887765443210 11123455566655443
Q ss_pred ------EEEEEeCCCCeEEE---Ee-----------cCCcEEEEEEcCCCCEEEEEEc---------CCCcEEEeecccC
Q psy12365 115 ------SVSIYNKHGKLIDK---IT-----------LPGLCIVMDWDSEGDLLGIISS---------NSSAVNVWTLLTY 165 (1324)
Q Consensus 115 ------~i~v~d~~g~~~~~---~~-----------~~~~i~~~~~~~~g~~l~~~~~---------~~~~i~iwd~~~~ 165 (1324)
.+.+.|..+..... +. .++....++++|+|..+.+... .++.|.+.|..+.
T Consensus 281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~ 360 (426)
T 3c75_H 281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG 360 (426)
T ss_dssp EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence 23333332211110 00 0111122688999887776222 1357999998844
Q ss_pred ---------CCeeEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCce
Q psy12365 166 ---------TLGERISWSDDGQ-LLAVTT-SGGSVKIYLSKLPKL 199 (1324)
Q Consensus 166 ---------~~i~~~~~s~~~~-~l~~~~-~dg~i~~~~~~~~~~ 199 (1324)
...+.+.|+|||+ ++++.. .++.|.++|......
T Consensus 361 kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 361 ERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred eEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 4578899999999 888887 489999999876554
No 357
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=1.4e-06 Score=97.87 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCC-C-------hhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC---
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ-D-------PECQRKCKEGIARTSIRVGDFRLGIRLAAESN--- 816 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~-~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--- 816 (1324)
...+..+|..+...|+|++|+..|++++...|.... . ......++.++|.+|.+.|++++|++.++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455688999999999999999999999999987210 0 00114677778889999999999998888762
Q ss_pred -C-hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHH-
Q psy12365 817 -S-SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV- 893 (1324)
Q Consensus 817 -~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~- 893 (1324)
+ ..+++.+|.+|..+|++++|+..|+++... .-.++.++..+|.++...|++++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------------------~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------------------YPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 778888888888888888888888776531 0114667778899999999999884
Q ss_pred HHHHH
Q psy12365 894 GAYER 898 (1324)
Q Consensus 894 ~~y~~ 898 (1324)
..|.+
T Consensus 286 ~~~~~ 290 (336)
T 1p5q_A 286 KLYAN 290 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45555
No 358
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=2.3e-06 Score=81.20 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCC----C-hhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC-------
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ----D-PECQRKCKEGIARTSIRVGDFRLGIRLAAESN------- 816 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~------- 816 (1324)
..+...|..+...|+|++|+..|++++..+|+.+. . ...+..++.+++.++.++|+|++|+..+.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44578899999999999999999999999986210 0 01234588899999999999999998876642
Q ss_pred --C---hHHH----HHHHHHHHHccCHHHHHHHHHHhcCH
Q psy12365 817 --S---SVLK----NECADILQQFNKLNDAVTLYESAGNY 847 (1324)
Q Consensus 817 --~---~~~~----~~l~~~~~~~g~~~~A~~~y~~~~~~ 847 (1324)
+ ..+| +..|..+..+|++++|+..|+++...
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2 6688 99999999999999999999998753
No 359
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=2.2e-06 Score=79.46 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHH
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNEC 824 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l 824 (1324)
....+|..+...|++++|+..|++++..+|. +...+..+|.++.+.|++++|+..++++ |+ ..++..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3578899999999999999999999999997 5666778999999999999999999887 33 7899999
Q ss_pred HHHHHHccCHHHHHHHHHHhcC
Q psy12365 825 ADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 825 ~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
|.++...|++++|+..|+++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 360
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.27 E-value=2e-05 Score=87.31 Aligned_cols=171 Identities=11% Similarity=-0.026 Sum_probs=115.1
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC-C----CCEEEEEEcCCCCEEEE----EEc--------
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL-P----GLCIVMDWDSEGDLLGI----ISS-------- 74 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~-~----~~i~~i~~~~d~~~l~~----~~~-------- 74 (1324)
+...+..+.++| +|+++++...++.|.+|+.+|+....... . ..+.+++++|+|..+++ +..
T Consensus 84 ~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 84 ATAFTNGNAVDA-QQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp SCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CCCccceeeECC-CCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 345688999999 99977665556789999988764332221 1 34678999999987775 221
Q ss_pred ----CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-----------EEEEEeCCCCeEE---EEe--cCCc
Q psy12365 75 ----NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----------SVSIYNKHGKLID---KIT--LPGL 134 (1324)
Q Consensus 75 ----~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----------~i~v~d~~g~~~~---~~~--~~~~ 134 (1324)
..+.|+.||..+++..... .......++|+|+++.|.+ .|.+|+..+.... .+. ..+.
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL 240 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence 0256777887666655443 3345788999999987655 2677776532221 111 2344
Q ss_pred EEEEEEcCCCCEEEEEEcCCCcEEEeecccC--------CCeeEEEEcCCCCEEEEEeCCCc
Q psy12365 135 CIVMDWDSEGDLLGIISSNSSAVNVWTLLTY--------TLGERISWSDDGQLLAVTTSGGS 188 (1324)
Q Consensus 135 i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~--------~~i~~~~~s~~~~~l~~~~~dg~ 188 (1324)
...+.++++|++.+ ++. +.|.+|+.+.. ..+.+++|+|+++.|.+++.++.
T Consensus 241 pdgi~~d~~G~lwv--~~~-~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 241 PDGFCVDRGGWLWS--SSG-TGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CCSEEECTTSCEEE--CCS-SEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred CCeEEECCCCCEEE--ecC-CcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 55688999999554 344 44888887621 45788999999999998887643
No 361
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.27 E-value=3.2e-05 Score=87.31 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=117.5
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeC-----CCcEEEEEC-CCcEEEEEeCC-------CCEEEEEEcCCCCEEEEEEc---
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTGR-----DSSVSIYNK-HGKLIDKITLP-------GLCIVMDWDSEGDLLGIISS--- 74 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~~-----~~~v~v~~~-~~~~~~~~~~~-------~~i~~i~~~~d~~~l~~~~~--- 74 (1324)
+|...+..++++| +|+++++-.. ++.|.+||. +|+.+..+..+ ..+..++++|++..+.++..
T Consensus 64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 4556899999999 9887665433 578999998 47767766632 34689999987666655543
Q ss_pred CCCeEEEEEcCCCeEEEEecCCC-----------------------------CCceEEEEecCCCEEEE------EEEEE
Q psy12365 75 NSSAVNVWNTYTKKRTIVDSGLR-----------------------------DPLTCLVWCKQCSMLQL------SVSIY 119 (1324)
Q Consensus 75 ~d~~i~iw~~~~~~~~~~~~~~~-----------------------------~~v~~~~~s~~~~~l~~------~i~v~ 119 (1324)
.++.|.+||..+++......+|. ..+..++|+|+|+.|.+ .+..+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 47899999998887766654421 23577999999987766 44444
Q ss_pred eCC----CC--------eEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeec-c-c---------CCCeeEEEEcCC
Q psy12365 120 NKH----GK--------LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL-L-T---------YTLGERISWSDD 176 (1324)
Q Consensus 120 d~~----g~--------~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~-~-~---------~~~i~~~~~s~~ 176 (1324)
+.. +. ........+....++++++|.++++ ...++.|.+||. . + ...+..++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va-~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG-DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE-EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE-ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 421 11 0111122344556889999988887 778888999998 3 1 134677888887
Q ss_pred CCEEEEEeCCC
Q psy12365 177 GQLLAVTTSGG 187 (1324)
Q Consensus 177 ~~~l~~~~~dg 187 (1324)
|.++++.+..+
T Consensus 302 g~l~v~~~~~~ 312 (343)
T 2qe8_A 302 GYLYFDCNQLH 312 (343)
T ss_dssp SCEEEEECCGG
T ss_pred CcEEEEeCccc
Confidence 77666555433
No 362
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=2.2e-06 Score=81.21 Aligned_cols=113 Identities=10% Similarity=-0.011 Sum_probs=91.4
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|.++...|++++|+..|.++. ...+....++..+|.++...|++++|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI------------------------KRNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 3456788889999999999998776532 1233446788999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHHHHccC
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADILQQFNK 833 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~~~~g~ 833 (1324)
+|++++...|. +...+..+|.++.+.|++++|++.+++... ..++..++.++..+|+
T Consensus 72 ~~~~a~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 72 DCEECIQLEPT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999886 456677799999999999999999887632 6778888888877664
No 363
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.26 E-value=0.00012 Score=81.79 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=112.6
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CC-----CCEEEEEEcCCCCEEEEEEcC-----CCeEEE
Q psy12365 13 GPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LP-----GLCIVMDWDSEGDLLGIISSN-----SSAVNV 81 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~-----~~i~~i~~~~d~~~l~~~~~~-----d~~i~i 81 (1324)
...+.++.|+| +|+++++. .+ .|.+||..+.....+. .. ..+.++.++|+|+.+++.... .+.|..
T Consensus 89 ~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 35688999999 99887654 44 4999998443333333 21 358899999999876654321 245666
Q ss_pred EEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCC---C-CeE--EEEe----cCCcEEEEEEcCCCC
Q psy12365 82 WNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKH---G-KLI--DKIT----LPGLCIVMDWDSEGD 145 (1324)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~---g-~~~--~~~~----~~~~i~~~~~~~~g~ 145 (1324)
++ +++..... ........++|+|+|+.+.+ .|.+||.+ | ... ..+. ..+....+.++++|.
T Consensus 166 ~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 166 VA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp EE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred Ee--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 66 46554432 23335689999999987655 79999974 4 321 1221 235677899999998
Q ss_pred EEEEEEcCCCcEEEeecccC---------CCeeEEEEc-CCCCEEEEEeCCC
Q psy12365 146 LLGIISSNSSAVNVWTLLTY---------TLGERISWS-DDGQLLAVTTSGG 187 (1324)
Q Consensus 146 ~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~s-~~~~~l~~~~~dg 187 (1324)
+.+. ...++.|..||.... ..+++++|+ +++..|++++..+
T Consensus 243 lwva-~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 243 IWNA-RWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEE-EETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEE-EeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 7776 556678999987521 357889998 8888777665443
No 364
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=3.6e-06 Score=80.28 Aligned_cols=96 Identities=6% Similarity=-0.005 Sum_probs=85.1
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
+..+..+..+|..+...|+|++|+..|++++..+|. +...+..+|.++...|++++|+..+++. ++ ..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 445678899999999999999999999999999997 4567778999999999999999998876 22 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcCH
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGNY 847 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~~ 847 (1324)
++..+|.++..+|++++|+..|+++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 365
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=3.6e-06 Score=79.27 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHH
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKN 822 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~ 822 (1324)
...+..+|..+...|++++|+.+|++++...|. +...+..++.++...|++++|++.+++. ++ ..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 466788999999999999999999999999886 4566777899999999999999988876 22 77889
Q ss_pred HHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 823 ECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 823 ~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
.+|.++...|++++|...|+++..
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999887753
No 366
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.23 E-value=2.9e-05 Score=98.14 Aligned_cols=175 Identities=11% Similarity=-0.023 Sum_probs=116.2
Q ss_pred eEEEEecCCCCEEEEEeCCCc--------------EEEEECCCcE---EEEEeC---CCCEEEEEEcCCCCEEEEEEcC-
Q psy12365 17 VYVCWQRRTGELLATTGRDSS--------------VSIYNKHGKL---IDKITL---PGLCIVMDWDSEGDLLGIISSN- 75 (1324)
Q Consensus 17 ~~~~~sp~~g~~l~~~~~~~~--------------v~v~~~~~~~---~~~~~~---~~~i~~i~~~~d~~~l~~~~~~- 75 (1324)
..++|+| | +.|++++.++. |++|++.+.. ...+.. +..+.++.|||||++|++.+..
T Consensus 212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 5789999 9 99998876554 8899973321 222332 2358899999999999988751
Q ss_pred ---CCeEEEEEcCCC--e-EEEEecCCCCCceEEEEecCCCEEEE---------EEEEEeCCC--CeEEEEe--cCCcEE
Q psy12365 76 ---SSAVNVWNTYTK--K-RTIVDSGLRDPLTCLVWCKQCSMLQL---------SVSIYNKHG--KLIDKIT--LPGLCI 136 (1324)
Q Consensus 76 ---d~~i~iw~~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~---------~i~v~d~~g--~~~~~~~--~~~~i~ 136 (1324)
...|++||..++ + ...+ ..+.+.+... ++|+|..|++ .|.+||..+ .....+. +...+.
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~ 367 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTAL-IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLE 367 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEE-ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEE
T ss_pred CCCcceEEEEECCCCCCcccEEe-cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEE
Confidence 238999999876 4 4444 3444445555 4588888776 599999875 2334433 233466
Q ss_pred EEEEcCCCCEEEEEEcCCCcEEEeecc--c----------CCCeeEEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q psy12365 137 VMDWDSEGDLLGIISSNSSAVNVWTLL--T----------YTLGERISWSDDGQLLAVTTS----GGSVKIYLSKLP 197 (1324)
Q Consensus 137 ~~~~~~~g~~l~~~~~~~~~i~iwd~~--~----------~~~i~~~~~s~~~~~l~~~~~----dg~i~~~~~~~~ 197 (1324)
.+.|+ ++.++++ ...++..+||..+ . ...+..+.|+|+++.+++... .+.+++|++...
T Consensus 368 ~~~~~-~~~lv~~-~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 368 SVGIA-GNRLFAS-YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEE-BTEEEEE-EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEE-CCEEEEE-EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77887 4555555 7778877777543 1 134677889999886664432 367888887543
No 367
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=5.3e-06 Score=78.77 Aligned_cols=118 Identities=17% Similarity=0.013 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhh---cccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHH
Q psy12365 646 QSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVE---EEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMA 722 (1324)
Q Consensus 646 ~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a 722 (1324)
....|...|..+.+.|++++|+.+|.++..+.....-..... .....+..+|.++..+|+|++|+..|.+ |
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k------A 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK------A 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------H
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH------H
Confidence 345678999999999999999999998754322100000000 0122788999999999999999997654 2
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCchHHH----HHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 723 LTLRRDLRQWREALALATSLGSNQTPIIS----CDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 723 ~~~~~~~~~~~~Al~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
+++ |++++ ...++...++ +..|.++..+|++++|+..|+++++..|+
T Consensus 84 L~l------~n~~~-----e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 84 LHY------FNRRG-----ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHH------HHHHC-----CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHh------hhccc-----cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 332 12221 2245566788 99999999999999999999999999886
No 368
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.21 E-value=2e-05 Score=84.47 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=115.0
Q ss_pred HHHHHHhcCC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHH
Q psy12365 735 ALALATSLGS--NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLA 812 (1324)
Q Consensus 735 Al~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 812 (1324)
|+..+++... +........+|.++...|++++|++.+.+.+..++. .....++..++.++.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-----EGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555554332 233555679999999999999999999999888762 236677777899999999999999999
Q ss_pred Hhc---CC------hHHHHHHHHH--HHHcc--CHHHHHHHHHHhcC-------HHHHHHHHHHcCCHHHHHhhhhcc--
Q psy12365 813 AES---NS------SVLKNECADI--LQQFN--KLNDAVTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPHI-- 870 (1324)
Q Consensus 813 ~~~---~~------~~~~~~l~~~--~~~~g--~~~~A~~~y~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~-- 870 (1324)
+++ .+ ..+...++.. ....| ++++|..+|+++.+ ...+..++.++|+|++|.+.++..
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 765 33 3455555544 44445 99999999999754 223445889999999999987542
Q ss_pred ------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 871 ------------K-SATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 871 ------------~-~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
+ ++.++.+++.+....|+ +|.+++.++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 2 55666666667777776 777777663
No 369
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.21 E-value=3.2e-05 Score=84.05 Aligned_cols=181 Identities=8% Similarity=-0.040 Sum_probs=138.6
Q ss_pred ccchhhHHHHHHHHcC--CHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHH----HHc-
Q psy12365 689 EEDTSILCGHVAALLG--NHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQL----EMT- 761 (1324)
Q Consensus 689 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~----~~~- 761 (1324)
....+...+.+...+| ++++|+.++.++ + ...+....++...+.++ ...
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~-------------------L-----~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEI-------------------A-----LDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHH-------------------H-----HHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHH-------------------H-----HHCcccHHHHHHHHHHHHHHHHhcc
Confidence 3456778888888888 788887766442 1 12345566777777777 666
Q ss_pred --CCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHH--HHHHHHHhcCC-----hHHHHHHHHHHHHcc
Q psy12365 762 --GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFR--LGIRLAAESNS-----SVLKNECADILQQFN 832 (1324)
Q Consensus 762 --g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~-----~~~~~~l~~~~~~~g 832 (1324)
++++++++.+++++..+|. +..++..-+.+..+.|.++ ++++++.++.+ -.+|...+.++...|
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred ccCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999998 5666666777888899988 99998887732 778999999999998
Q ss_pred C------HHHHHHHHHHhcC--------HHHHHHHHHHcCCHHH-HHhhhhc--------cCCHHHHHHHHHHHHHcCCH
Q psy12365 833 K------LNDAVTLYESAGN--------YEKAATCYIQLKNWTK-IGQLLPH--------IKSATTFIQYAKAKEAMGSY 889 (1324)
Q Consensus 833 ~------~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~~-A~~~~~~--------~~~~~~~~~~a~~~~~~g~~ 889 (1324)
+ ++++++++.++.. +.....++.+.|+..+ +..++.+ ..++.++..+|.++...|+.
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 8 9999999998864 5555667777777444 3334433 23778899999999999999
Q ss_pred HHHHHHHHHhh
Q psy12365 890 RESVGAYERAE 900 (1324)
Q Consensus 890 ~~A~~~y~~a~ 900 (1324)
++|+++|.++.
T Consensus 275 ~~A~~~~~~l~ 285 (306)
T 3dra_A 275 NESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999955
No 370
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.6e-06 Score=76.64 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|++++|+..|.++.. .... ....+..+|.++..+|++++|+..|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--------~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------- 64 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--------RAPE-DARGYSNRAAALAKLMSFPEAIADCNKA---------- 64 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHH----------
Confidence 45789999999999999999999987632 2222 4567789999999999999999977553
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELA 778 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~ 778 (1324)
+++ .+....++..+|.++...|++++|+..|++++..+
T Consensus 65 ---------l~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 65 ---------IEK-----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------HHh-----CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 221 34557888999999999999999999999999988
No 371
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=4.1e-06 Score=82.93 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...|+++.|+.+|.++.. .... ....+..+|.++..+|++++|+..|.++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------- 71 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--------IAPA-NPIYLSNRAAAYSASGQHEKAAEDAELA---------- 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHH----------
Confidence 56789999999999999999999987632 2222 4567789999999999999999977553
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
+.+ .+....++..+|.++...|++++|+..|++++..+|+
T Consensus 72 ---------l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 72 ---------TVV-----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp ---------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred ---------HHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 221 2445788899999999999999999999999999997
No 372
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=5.1e-06 Score=97.04 Aligned_cols=131 Identities=8% Similarity=-0.040 Sum_probs=97.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCC---CCchHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12365 696 CGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGS---NQTPIISCDYAQQLEMTGQHAQALSFYQ 772 (1324)
Q Consensus 696 ~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~y~ 772 (1324)
.+..+..+|+|++|+.+|.+ ||...++... +....++.++|.+|..+|+|++|+.+|+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~-------------------aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRE-------------------CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHH-------------------HHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH-------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34455677888888886643 5555555332 2345788999999999999999999999
Q ss_pred HhcccCCCC-CCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-------------hHHHHHHHHHHHHccCHHHHH
Q psy12365 773 KSMELATPD-IQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-------------SVLKNECADILQQFNKLNDAV 838 (1324)
Q Consensus 773 ~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~ 838 (1324)
+++...... +.+.......+++||.+|..+|++++|+.+++++.+ .++...++..+..++++++|.
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998763210 002234567788899999999999999998887632 556678888899999999999
Q ss_pred HHHHHhc
Q psy12365 839 TLYESAG 845 (1324)
Q Consensus 839 ~~y~~~~ 845 (1324)
.+|.++.
T Consensus 456 ~~~~~~~ 462 (490)
T 3n71_A 456 FMYHKMR 462 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998873
No 373
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=4.1e-06 Score=95.14 Aligned_cols=132 Identities=9% Similarity=0.012 Sum_probs=99.2
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHh---hHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLR---QWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQ 766 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~---~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 766 (1324)
...+..+|..+...|++++|+..|.++. ++..... ..+++.. ..+....++..+|.++..+|+|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~g~~~~ 291 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVL------RYVEGSRAAAEDADGAK-----LQPVALSCVLNIGACKLKMSDWQG 291 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHHHHSCHHHHGG-----GHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHhhcCccccChHHHHH-----HHHHHHHHHHHHHHHHHhccCHHH
Confidence 3446678999999999999999886643 2221110 1111110 123345788999999999999999
Q ss_pred HHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHH
Q psy12365 767 ALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVT 839 (1324)
Q Consensus 767 A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~ 839 (1324)
|+++|++++..+|. +..++..+|.+|.++|++++|++.++++ ++ ..++..++.++..++++++|.+
T Consensus 292 A~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 292 AVDSCLEALEIDPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHTTCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 5666777899999999999999988876 22 7788888888888888887754
No 374
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=7.8e-06 Score=76.14 Aligned_cols=96 Identities=14% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-h
Q psy12365 744 SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-S 818 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~ 818 (1324)
+......+..+|..+...|++++|++.|++++...|. ....+..++.++.+.|++++|+.+++++ ++ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 3344677888999999999999999999999998886 3456667899999999999999988776 22 7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 819 VLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
.++..+|.++...|++++|..+|+++..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7888899999999999999998887753
No 375
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.19 E-value=3.1e-05 Score=82.97 Aligned_cols=215 Identities=9% Similarity=0.021 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhhcHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCHH---------HHHHHHHHccchhHHHHHHHhhh
Q psy12365 620 TLDISLHKVLKLLNWKEAWNICAVLN---QSETWRSFAEACLQNLEFS---------WAIRAYQSLDEAGMVWCLESLVE 687 (1324)
Q Consensus 620 ~~~~~~~~~l~~~~~~~A~~~~~~~~---~~~~~~~l~~~~l~~~~~~---------~A~~~~~~~~~~~~~~~l~~~~~ 687 (1324)
+.+-.++..+-.|.|..++.-+..+. ....-..+..+++..|++. .|.+.|.....-.....+++...
T Consensus 15 ~~lf~ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~ 94 (310)
T 3mv2_B 15 MDYFNIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLK 94 (310)
T ss_dssp CCTHHHHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 33567888888999999998666552 2334444456666666542 35555443322222333443332
Q ss_pred ---cccchhhHHHHHHHHcCCHHHHHHHHHhC-------CChH---HHHHHHHHHhhHHHHHHHHHhcCCCCc------h
Q psy12365 688 ---EEEDTSILCGHVAALLGNHDTAQQRYLTS-------DIPT---MALTLRRDLRQWREALALATSLGSNQT------P 748 (1324)
Q Consensus 688 ---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-------~~~~---~a~~~~~~~~~~~~Al~~~~~~~~~~~------~ 748 (1324)
........+|.++...|++++|++.+.+. +..+ .+++++..+|+.+.|.+.++++...+. .
T Consensus 95 ~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d 174 (310)
T 3mv2_B 95 DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN 174 (310)
T ss_dssp TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch
Confidence 01233467888888888888888888776 2222 456677777777777777765432221 3
Q ss_pred HHHHHHHHH--HHHcC--CHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc---------
Q psy12365 749 IISCDYAQQ--LEMTG--QHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES--------- 815 (1324)
Q Consensus 749 ~~~~~~~~~--~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------- 815 (1324)
.+...++.. ....| ++.+|...|+++....|+ ......+ +. ++.++|++++|.+.++.+
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-----~~~~~lL--ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-----WKTQLGL--LN-LHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-----HHHHHHH--HH-HHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-----cccHHHH--HH-HHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 444444444 34444 777888888877666553 1111111 11 666777777777766432
Q ss_pred -----CC-hHHHHHHHHHHHHccCHHHHHHHHHHh
Q psy12365 816 -----NS-SVLKNECADILQQFNKLNDAVTLYESA 844 (1324)
Q Consensus 816 -----~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~ 844 (1324)
++ ++++.+++.+...+|+ +|.++++++
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 11 4444444444444554 555555444
No 376
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.18 E-value=7.6e-06 Score=76.98 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLR 726 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~ 726 (1324)
...|..+|..+...++++.|+..|.++... ... ....+..+|.++...|++++|+..|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------- 72 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPA-NAVYFCNRAAAYSKLGNYAGAVQDCERA---------- 72 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCC-CHHHHHHHHHHHHHhhchHHHHHHHHHH----------
Confidence 457889999999999999999998865321 222 3456788899999999999999877553
Q ss_pred HHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH
Q psy12365 727 RDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805 (1324)
Q Consensus 727 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 805 (1324)
+. . .+....++..+|.++...|++++|+.+|++++...|. +...+..++.++.+.|++
T Consensus 73 ---------~~----~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ---------IC----I-DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---------HH----H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHHTTC
T ss_pred ---------Hh----c-CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-------chHHHHHHHHHHHHHhcC
Confidence 22 1 2344678899999999999999999999999999886 334455566666666654
No 377
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.17 E-value=0.00034 Score=73.63 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=120.9
Q ss_pred CCCC--CeeEEEEecCCCCEEEEEeC--CCcEEEEEC-CCcEEEEEeCCCC--EEEEEEcCCCCEEEEEEcCCCeEEEEE
Q psy12365 11 PHGP--GDVYVCWQRRTGELLATTGR--DSSVSIYNK-HGKLIDKITLPGL--CIVMDWDSEGDLLGIISSNSSAVNVWN 83 (1324)
Q Consensus 11 ~h~~--~i~~~~~sp~~g~~l~~~~~--~~~v~v~~~-~~~~~~~~~~~~~--i~~i~~~~d~~~l~~~~~~d~~i~iw~ 83 (1324)
.|+. ....+.|+| +|.+.++.+. ++.|.++|. +|+.+..+..+.. ...+++ +|+.+.++...++.+.++|
T Consensus 16 p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp ECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEE
T ss_pred ECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEE
Confidence 4553 467999999 8865555553 578999998 7888888774433 334455 4678888887789999999
Q ss_pred cCCCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecCC------cEEEEEEcCCCCEEEEEE
Q psy12365 84 TYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLPG------LCIVMDWDSEGDLLGIIS 151 (1324)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~------~i~~~~~~~~g~~l~~~~ 151 (1324)
..+.+....+..... ....+++||..+.+ .|.++|.. .+....+.... .+..+.|. +|...+. .
T Consensus 93 ~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn-~ 168 (266)
T 2iwa_A 93 RRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN-I 168 (266)
T ss_dssp TTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-E
T ss_pred CCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe-c
Confidence 998887766542211 22345667776666 89999976 46666665321 35678887 7765555 5
Q ss_pred cCCCcEEEeecccC--------C---------------CeeEEEEcCCCCEEEEEe-CCCcEEEEEc
Q psy12365 152 SNSSAVNVWTLLTY--------T---------------LGERISWSDDGQLLAVTT-SGGSVKIYLS 194 (1324)
Q Consensus 152 ~~~~~i~iwd~~~~--------~---------------~i~~~~~s~~~~~l~~~~-~dg~i~~~~~ 194 (1324)
..++.|.+.|..+. . ..+.++|+|+++.+++++ ..+.+...++
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 56788888888733 1 347899999988766655 5566666554
No 378
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=4e-06 Score=86.12 Aligned_cols=123 Identities=7% Similarity=-0.027 Sum_probs=94.3
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCC-----------chHHHHHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQ-----------TPIISCDYAQQL 758 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~-----------~~~~~~~~~~~~ 758 (1324)
...+..+|..+...|++++|+..|.++. .+........ ...++..+|.++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 98 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEAL-------------------DFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999876532 1110000000 136788999999
Q ss_pred HHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccC
Q psy12365 759 EMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNK 833 (1324)
Q Consensus 759 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~ 833 (1324)
...|+|++|+.+|++++..+|. +..++..+|.+|...|++++|++.++++ ++ ..++..++.++...++
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4566777999999999999999988876 22 7788889999888888
Q ss_pred HHHHH
Q psy12365 834 LNDAV 838 (1324)
Q Consensus 834 ~~~A~ 838 (1324)
..++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87776
No 379
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.16 E-value=8.5e-05 Score=80.64 Aligned_cols=205 Identities=8% Similarity=-0.052 Sum_probs=140.0
Q ss_pred HHHHcCCH-HHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC--CHHHHHHHHHhc----CC-hHHHHHHHHHH
Q psy12365 757 QLEMTGQH-AQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG--DFRLGIRLAAES----NS-SVLKNECADIL 828 (1324)
Q Consensus 757 ~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~----~~-~~~~~~l~~~~ 828 (1324)
.....|++ ++|++.+.+++..+|+ ...+++.-+.++..+| +++++++++.++ |+ ..+|+.-+.++
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~-------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELAS-------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcH-------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 33445555 6899999999999998 4556666788888888 999999888776 33 77888888887
Q ss_pred ----HHc---cCHHHHHHHHHHhcC--------HHHHHHHHHHcCCHH--HHHhhhhccC-----CHHHHHHHHHHHHHc
Q psy12365 829 ----QQF---NKLNDAVTLYESAGN--------YEKAATCYIQLKNWT--KIGQLLPHIK-----SATTFIQYAKAKEAM 886 (1324)
Q Consensus 829 ----~~~---g~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~--~A~~~~~~~~-----~~~~~~~~a~~~~~~ 886 (1324)
... +++++++.+++++.. +..-.-++...+.|+ +++++.+++. +-.++.+.+.++...
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 666 789999999988865 333445566677887 8877776654 555677677777777
Q ss_pred CC------HHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHH-HHHHcCCHH
Q psy12365 887 GS------YRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH-FLILSKCYQ 959 (1324)
Q Consensus 887 g~------~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~-~~~~~~~~~ 959 (1324)
|. ++++++++.++- .+ ...+..+...++.++.+.|+..+++. +..+.-
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI------~~----------------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~--- 248 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKI------VK----------------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV--- 248 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHH------HH----------------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE---
T ss_pred cccchhhhHHHHHHHHHHHH------Hh----------------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH---
Confidence 76 777777777622 11 12444556667777777877544333 333330
Q ss_pred HHHHHHHhccchhHhhhhccCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy12365 960 DAFNLSQQHKKLHEFGKFLLEE--DEPNPVELKRLAIHFEEDKDMFRAAQYYYHA 1012 (1324)
Q Consensus 960 ~A~~l~~~~~~~~~~~~~l~l~--~~~~~~~~~~la~~~~~~g~~~~A~~~y~~~ 1012 (1324)
.++ .+..+.++..+|.+|.++|+..+|.+.|.++
T Consensus 249 -------------------~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 249 -------------------DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp -------------------EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------------hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 011 2467788888888888766666666665543
No 380
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=4.2e-06 Score=82.63 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhccc--------CCCCC---CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc-
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMEL--------ATPDI---QDPECQRKCKEGIARTSIRVGDFRLGIRLAAES- 815 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~--------~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~- 815 (1324)
...+...|..+...|+|++|+..|.+++.. .|... ........++.++|.+|.++|+|++|+..+.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456688999999999999999999999987 22100 001225567888999999999999999988887
Q ss_pred ---CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 816 ---NS-SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 816 ---~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+. ..+++.+|.++..+|++++|+..|+++..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 22 78999999999999999999999988764
No 381
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=2.4e-06 Score=85.90 Aligned_cols=94 Identities=9% Similarity=0.016 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHH-HHhcCCH--HHHHHHHHhc----CC
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIART-SIRVGDF--RLGIRLAAES----NS 817 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~----~~ 817 (1324)
+..+.++..+|.++...|++++|+.+|++++...|. +...+..++.+ +...|++ ++|++.+++. +.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 455688899999999999999999999999999887 45566778888 7799998 9999988876 22
Q ss_pred -hHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 818 -SVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 818 -~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
..++..+|.++..+|++++|...|+++.
T Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 114 EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7889999999999999999999998875
No 382
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.15 E-value=1.5e-05 Score=94.06 Aligned_cols=144 Identities=9% Similarity=0.042 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC---------HHHHHHHHHhc----
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD---------FRLGIRLAAES---- 815 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~---- 815 (1324)
.++...-..+.+.|++++|+++|+++....- .++...++.|..++.+.+. +++|.++++++
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv------~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGV------QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC------CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 3455666888899999999999999987654 2356777778877776554 68899999887
Q ss_pred --CChHHHHHHHHHHHHccCHHHHHHHHHHhcC---------HHHHHHHHHHcCCHHHHHhhhhccC------CHHHHHH
Q psy12365 816 --NSSVLKNECADILQQFNKLNDAVTLYESAGN---------YEKAATCYIQLKNWTKIGQLLPHIK------SATTFIQ 878 (1324)
Q Consensus 816 --~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~~---------~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~ 878 (1324)
|+..+++.+...|.+.|++++|..+|+++.. |..++..|++.|++++|.++++++. +...+..
T Consensus 101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4588899999999999999999999998753 8889999999999999999998875 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy12365 879 YAKAKEAMGSYRESVGAYER 898 (1324)
Q Consensus 879 ~a~~~~~~g~~~~A~~~y~~ 898 (1324)
+-..+...|+.++|.++|.+
T Consensus 181 Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHH
Confidence 77888888888888888776
No 383
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.14 E-value=9.4e-06 Score=95.79 Aligned_cols=104 Identities=8% Similarity=0.002 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc------CChHHHHHHHHHHHHccCHH
Q psy12365 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES------NSSVLKNECADILQQFNKLN 835 (1324)
Q Consensus 762 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 835 (1324)
|+.++|.+.|+++....- .++...++.+...|.+.|++++|+++++++ |+...++.+-..|.+.|+.+
T Consensus 84 ~~l~~A~~lf~~M~~~G~------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKV------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHHHHTTC------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 347899999999877654 235788889999999999999999999987 34788999999999999999
Q ss_pred HHHHHHHHhcC---------HHHHHHHHHHcCCHHHHHhhhhccC
Q psy12365 836 DAVTLYESAGN---------YEKAATCYIQLKNWTKIGQLLPHIK 871 (1324)
Q Consensus 836 ~A~~~y~~~~~---------~~~~~~~~~~~~~~~~A~~~~~~~~ 871 (1324)
+|.++|+++.. |..++.+|.+.|++++|.++++++.
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 99999999854 8889999999999999999998875
No 384
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=4.7e-06 Score=80.55 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.++.+|.++...|++++|+..|.++. . ..+..+.++..+|.++...|+|++|+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-------------------~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALC-------------------V-----LDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------H-----cCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456788999999999999999775532 1 234557788999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
.|++++..+|+ +...+..+|.+|...|++++|++.+++.
T Consensus 77 ~~~~al~l~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 77 SYSYGAVMDIX-------EPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHSTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-------CchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999997 4556677999999999999999988876
No 385
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=8e-07 Score=105.05 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.+..+|.++...|++++|++.|.++ +++ .+....++..+|..+..+|+|++|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~A-------------------l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQA-------------------IEL-----NPSNAIYYGNRSLAYLRTECYGYALG 61 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHH-------------------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-------------------HHh-----CCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 344566777788889999998877552 222 34557888999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHH--HHHccCHHHHHHHHH
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADI--LQQFNKLNDAVTLYE 842 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~--~~~~g~~~~A~~~y~ 842 (1324)
+|+++++.+|. +...+..+|.+|.++|++++|++.++++ ++ ..++..++.. +..+|++++|+..|+
T Consensus 62 ~~~~al~l~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999997 4667778999999999999999998886 22 6677778877 888899999999988
Q ss_pred Hhc
Q psy12365 843 SAG 845 (1324)
Q Consensus 843 ~~~ 845 (1324)
+..
T Consensus 135 ~~~ 137 (477)
T 1wao_1 135 HKR 137 (477)
T ss_dssp -CC
T ss_pred ccc
Confidence 543
No 386
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.14 E-value=0.00081 Score=72.53 Aligned_cols=180 Identities=13% Similarity=0.003 Sum_probs=121.4
Q ss_pred CeeEEEEecCCCCEEEEEe-CCCcEEEEECCCcEEEEEe-C-CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 15 GDVYVCWQRRTGELLATTG-RDSSVSIYNKHGKLIDKIT-L-PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~~~~~~~-~-~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
.+..++|+| ++..|.++. .++.|.+++.+|.....+. . .....+++++|++..+.++...++.|.+++.++.....
T Consensus 37 ~~~gi~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 37 VIIGLAFDC-VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEET-TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cEEEEEEec-CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356899999 776666555 4678999999776544443 2 25788999999888888877667899999987654333
Q ss_pred EecCCCCCceEEEEecCCCEEEE--------EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEEee
Q psy12365 92 VDSGLRDPLTCLVWCKQCSMLQL--------SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWT 161 (1324)
Q Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd 161 (1324)
...........++++|++..|.+ .|..++.+|.....+. .-.....++++|++..|.+.....+.|..++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 33322345789999997555443 5667788876655443 2235788999998877766466778899988
Q ss_pred cccC---------CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q psy12365 162 LLTY---------TLGERISWSDDGQLLAVTT-SGGSVKIYLSKLP 197 (1324)
Q Consensus 162 ~~~~---------~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~~ 197 (1324)
.... ..+..++.. +..|.++. .++.|..++....
T Consensus 196 ~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 196 PAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred cCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 8621 234455543 44555554 4467777776543
No 387
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=9.6e-06 Score=74.59 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHH
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKN 822 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~ 822 (1324)
...+..+|..+...|++++|+..|++++...|. +...+..+|.++...|++++|++.+++. ++ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 356788899999999999999999999999887 4566777999999999999999998876 22 78889
Q ss_pred HHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 823 ECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 823 ~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
.+|.++...|++++|...|+++..
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 388
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=4.7e-06 Score=77.26 Aligned_cols=95 Identities=7% Similarity=-0.048 Sum_probs=79.4
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
+.++.+|..+...|++++|+..|.++. + ..++...++..+|.++...|++++|+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al-------------------~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 73 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVC-------------------Q-----KEPEREEAWRSLGLTQAENEKDGLAIIA 73 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH-------------------H-----HCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 446778888999999999988775532 1 2355678889999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN 816 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 816 (1324)
|++++..+|+ +...+..++.++.+.|++++|++.+++..
T Consensus 74 ~~~al~l~P~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 74 LNHARMLDPK-------DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999997 45567789999999999999999998763
No 389
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=6.7e-06 Score=78.98 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=78.5
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
+.++.+|..+...|++++|+..|.++. . ..+..+.++..+|.++...|+|++|+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al-------------------~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALC-------------------M-----LDHYDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHH-------------------H-----hCCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455778889999999999999775522 1 2345577889999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
|++++..+|. +...+..+|.+|...|++++|++.+++.
T Consensus 75 ~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 75 YSYGALMDIN-------EPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHCTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCC-------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999997 4556677999999999999999998876
No 390
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=6.7e-06 Score=96.74 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCC-C-------hhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC---
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ-D-------PECQRKCKEGIARTSIRVGDFRLGIRLAAESN--- 816 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~-~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--- 816 (1324)
...+..+|..+...|+|++|+..|++++...|.... . ......++.++|.+|.++|+|++|+..++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345678899999999999999999999998886100 0 01115677788999999999999998888762
Q ss_pred -C-hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHH
Q psy12365 817 -S-SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 894 (1324)
Q Consensus 817 -~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 894 (1324)
+ ..+++.+|.+|..+|++++|+..|+++..... .+..++..++.++...|++++|.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---------------------~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---------------------QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 77888899999999999999888888764210 134566677888888888887765
Q ss_pred H
Q psy12365 895 A 895 (1324)
Q Consensus 895 ~ 895 (1324)
.
T Consensus 407 ~ 407 (457)
T 1kt0_A 407 R 407 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 391
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=6.3e-06 Score=84.64 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCCh---------hhHHhhhchHHHHHHhcCCHHHHHHHHHhc----
Q psy12365 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDP---------ECQRKCKEGIARTSIRVGDFRLGIRLAAES---- 815 (1324)
Q Consensus 749 ~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---- 815 (1324)
..+..+|..+...|+|++|+.+|++++...|...... .....++..+|.++.+.|++++|++.++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4457889999999999999999999999887611000 001256677888888999999998888776
Q ss_pred CC-hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHH
Q psy12365 816 NS-SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV 893 (1324)
Q Consensus 816 ~~-~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 893 (1324)
++ ..++..+|.++..+|++++|+..|+++.... -.++.++..++.++...+++.++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---------------------PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---------------------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 7788888888888888888888887765310 013455566666666666666655
No 392
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=6.5e-06 Score=74.94 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----C---ChH
Q psy12365 747 TPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----N---SSV 819 (1324)
Q Consensus 747 ~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~---~~~ 819 (1324)
...++..+|..+...|++++|+.+|++++...|. +...+..+|.++...|++++|++.+++. + ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence 3456678899999999999999999999999887 3556677899999999999999988776 2 367
Q ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHhcC
Q psy12365 820 LKNECADILQQF-NKLNDAVTLYESAGN 846 (1324)
Q Consensus 820 ~~~~l~~~~~~~-g~~~~A~~~y~~~~~ 846 (1324)
++..+|.++... |++++|..+|+++..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 888999999999 999999999988753
No 393
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=7.1e-06 Score=93.14 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccCCCCC---------CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC----
Q psy12365 751 SCDYAQQLEMTGQHAQALSFYQKSMELATPDI---------QDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS---- 817 (1324)
Q Consensus 751 ~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---- 817 (1324)
+..+|..+...|+|++|+..|++++...+... ........++.++|.+|.++|++++|++.++++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 47788999999999999999999998322100 00022567778889999999999999998888732
Q ss_pred -hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHH
Q psy12365 818 -SVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 894 (1324)
Q Consensus 818 -~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 894 (1324)
..+++.+|.+|..+|++++|+..|+++.+.. -.++.++..++.++...+++++|.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---------------------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA---------------------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999998888775311 0134555566666666666666654
No 394
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.07 E-value=1.3e-05 Score=74.68 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=87.0
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..+..+|.++...|++++|++.|.++. . . .+....++..+|..+...|++++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-------------------~----~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKAL-------------------E----L-DPNNAEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----H-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------H----H-CcCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445678888888999999988775531 1 1 234467788999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHcc
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFN 832 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g 832 (1324)
|++++...|. +...+..++.++...|++++|++.++++ ++ ..++..+|.++..+|
T Consensus 66 ~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 66 YQKALELDPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999998886 3455667899999999999999998876 22 677788888776543
No 395
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.07 E-value=0.00016 Score=81.06 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=115.5
Q ss_pred CeeEEEEecCCCCEEEEEeCC------CcEEEEEC-CCcEEEEEeCC----CCEEEEEEcCCCCEEEEEE----------
Q psy12365 15 GDVYVCWQRRTGELLATTGRD------SSVSIYNK-HGKLIDKITLP----GLCIVMDWDSEGDLLGIIS---------- 73 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~~------~~v~v~~~-~~~~~~~~~~~----~~i~~i~~~~d~~~l~~~~---------- 73 (1324)
....+..+| +| +++++..+ |.|.++|. +++.+..+... +..+.+.|+|+++.++++.
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence 345677889 99 66665444 78999997 57888877622 2345688999999888875
Q ss_pred --------cCCCeEEEEEcCCCeEEEEecCC-C-CCceEEEE--ecCCCEEEE-----------EEEEEeCC-CCe--EE
Q psy12365 74 --------SNSSAVNVWNTYTKKRTIVDSGL-R-DPLTCLVW--CKQCSMLQL-----------SVSIYNKH-GKL--ID 127 (1324)
Q Consensus 74 --------~~d~~i~iw~~~~~~~~~~~~~~-~-~~v~~~~~--s~~~~~l~~-----------~i~v~d~~-g~~--~~ 127 (1324)
..+.+|.+||+.+++....+.-- . .....+.| +|+|+++.+ +|.+|..+ |.. .+
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 22689999999988766655321 1 23455656 999987665 45554433 221 11
Q ss_pred EEe---------c----------CCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc-c--C--------C-----------
Q psy12365 128 KIT---------L----------PGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL-T--Y--------T----------- 166 (1324)
Q Consensus 128 ~~~---------~----------~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~-~--~--------~----------- 166 (1324)
.+. . .+....+.+||||++|.+..-..+.|.++|+. . . +
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 110 0 24567899999999998845677899999974 1 1 2
Q ss_pred -----CeeEEEEcCCCCEEEEEe
Q psy12365 167 -----LGERISWSDDGQLLAVTT 184 (1324)
Q Consensus 167 -----~i~~~~~s~~~~~l~~~~ 184 (1324)
....+.++|||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 257899999999999887
No 396
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=2.6e-06 Score=95.72 Aligned_cols=141 Identities=9% Similarity=0.011 Sum_probs=85.1
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..+..+|..+...|+|++|+..|.++.....-...+...++++++...+. ..++..+|.++...|+|++|+.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK-------NPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH-------THHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 44567788899999999999999875322111112333455555554432 24789999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHH-HHccCHHHHHHHHHHh
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADIL-QQFNKLNDAVTLYESA 844 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~-~~~g~~~~A~~~y~~~ 844 (1324)
|++++..+|. +..++..+|.+|..+|++++|++.++++.. ..++..++.+. ...++.++|..+|.++
T Consensus 253 ~~~al~~~p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 253 CNIVLTEEEK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997 466677788999999999999998888744 55666677663 3445566666666665
Q ss_pred c
Q psy12365 845 G 845 (1324)
Q Consensus 845 ~ 845 (1324)
.
T Consensus 326 l 326 (338)
T 2if4_A 326 F 326 (338)
T ss_dssp -
T ss_pred h
Confidence 4
No 397
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.7e-05 Score=76.59 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hH
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SV 819 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~ 819 (1324)
+.....+..+|..+...|+|++|+++|++++...|. .......+..++.+|...|++++|++.+++. ++ ..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 345678899999999999999999999999999886 1112667778999999999999999988776 22 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
++..+|.++..+|++++|...|+++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999999999988753
No 398
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.02 E-value=8.2e-06 Score=81.96 Aligned_cols=115 Identities=9% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHH-HHHc
Q psy12365 758 LEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADI-LQQF 831 (1324)
Q Consensus 758 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~-~~~~ 831 (1324)
+...|++++|+..|++++..+|. +...+..+|.+|...|++++|++.++++ ++ ..++..+|.+ +...
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 34568999999999999999987 4566677899999999999999888876 22 7788888888 7788
Q ss_pred cCH--HHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 832 NKL--NDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 832 g~~--~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
|++ ++|+..|+++... .-.++.++..+|.++...|++++|+..|.++.
T Consensus 93 ~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALAL---------------------DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp TTCCCHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHh---------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766521 01156778889999999999999999999843
No 399
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=1.7e-05 Score=74.55 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC----hHHH
Q psy12365 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS----SVLK 821 (1324)
Q Consensus 750 ~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~----~~~~ 821 (1324)
.++.+|..+...|+|++|+..|++++...|.. ......+..+|.++.+.|++++|++.+++. ++ ..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 35778899999999999999999999988861 111245667899999999999999988776 22 5678
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 822 NECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
..+|.++..+|++++|...|+++..
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999988753
No 400
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=2e-05 Score=74.01 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC----------
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS---------- 817 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------- 817 (1324)
+..+..+|..+...|++++|+.+|++++...|. +...+..+|.++...|++++|+.++++...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 456788899999999999999999999998886 456667789999999999999998877622
Q ss_pred --hHHHHHHHHHHHHccCHHHHHHHHHHhcC
Q psy12365 818 --SVLKNECADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 818 --~~~~~~l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
..++..+|.++...|++++|...|+++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678889999999999999888887753
No 401
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=2e-05 Score=72.37 Aligned_cols=107 Identities=19% Similarity=0.111 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
+.+..+|.++...|++++|...|.++. . . .+..+.++..+|..+...|++++|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-------------------~----~-~~~~~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAI-------------------K----L-DPHNHVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----H-CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-------------------H----H-CCCcHHHHHHHHHHHHhhccHHHHHHH
Confidence 445677888888999999988775532 1 1 234467888999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-----hHHHHHHHHHH
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-----SVLKNECADIL 828 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~l~~~~ 828 (1324)
|++++...|. +...+..++.++...|++++|++.+++... ..++..++.+.
T Consensus 61 ~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 61 GCKTVDLKPD-------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999886 455667789999999999999999887632 56666666553
No 402
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.00 E-value=5e-05 Score=85.02 Aligned_cols=178 Identities=13% Similarity=0.003 Sum_probs=110.2
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEC-CCcEEEEEeCC--------CCEEEEEEcCCCCEEEEEEcC-CC
Q psy12365 18 YVCWQRRTGELLATTG----------RDSSVSIYNK-HGKLIDKITLP--------GLCIVMDWDSEGDLLGIISSN-SS 77 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~----------~~~~v~v~~~-~~~~~~~~~~~--------~~i~~i~~~~d~~~l~~~~~~-d~ 77 (1324)
.+.++| ||+++.++. .++.|.+||. +++.+.++..+ .....+.++|||++++++... +.
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 799999 999998886 3678999997 77888888733 246689999999999998753 46
Q ss_pred eEEE--EEcCCCeEEEEecCCC------CCceEEEEecCCCEEEE-----------------------------------
Q psy12365 78 AVNV--WNTYTKKRTIVDSGLR------DPLTCLVWCKQCSMLQL----------------------------------- 114 (1324)
Q Consensus 78 ~i~i--w~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~----------------------------------- 114 (1324)
.|.+ +|..+ ...+-.+.. +.-..+.++++|+.+.+
T Consensus 148 ~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 148 AAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred eEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 7888 88755 222211100 00011222333332222
Q ss_pred ------EEEEEeCCCCe---EEEEec-----------CCcEEEEEEcCCCCEEEEEEcC---------CCcEEEeecccC
Q psy12365 115 ------SVSIYNKHGKL---IDKITL-----------PGLCIVMDWDSEGDLLGIISSN---------SSAVNVWTLLTY 165 (1324)
Q Consensus 115 ------~i~v~d~~g~~---~~~~~~-----------~~~i~~~~~~~~g~~l~~~~~~---------~~~i~iwd~~~~ 165 (1324)
.+.+.|..+.. ...+.. +.....+.++|||+.+.+ +.. ++.+.++|..+.
T Consensus 226 ~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV-~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI-LTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE-EEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE-EeccccCcccccCCCEEEEECCCC
Confidence 23334433211 111110 011112679999998876 432 235669999843
Q ss_pred ---------CCeeEEEEcCCCCEE-EEEe-CCCcEEEEEcCCCce
Q psy12365 166 ---------TLGERISWSDDGQLL-AVTT-SGGSVKIYLSKLPKL 199 (1324)
Q Consensus 166 ---------~~i~~~~~s~~~~~l-~~~~-~dg~i~~~~~~~~~~ 199 (1324)
...+.+.|+|||+.+ ++.. .++.|.++|+.....
T Consensus 305 ~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 305 QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 457889999999854 4555 489999999876544
No 403
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=2.2e-05 Score=92.40 Aligned_cols=110 Identities=8% Similarity=-0.052 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHH------HHHHhhhcccchhhHHHHHHHHcCCHHHHHHHHHhCCChH
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVW------CLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPT 720 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 720 (1324)
...|..+|..+.+.++++.|+.+|.++....... ............+..+|.++..+|++++|+..|.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a---- 343 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA---- 343 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----
Confidence 4567889999999999999999998764321100 000000001345567777777777777777755442
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 721 MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 721 ~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
+.+ .+....+++.+|.++..+|+|++|+..|++++..+|.
T Consensus 344 ---------------l~~-----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 344 ---------------LGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp ---------------HHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred ---------------Hhc-----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 221 2334566777788888888888888888888777775
No 404
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=1.4e-05 Score=76.09 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|.++...|++++|+..|.++. . ..+..+.++..+|.++...|++++|+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-------------------~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAI-------------------T-----RNPLVAVYYTNRALCYLKMQQPEQALA 64 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H-----HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH-------------------h-----hCcCcHHHHHHHHHHHHHhcCHHHHHH
Confidence 4566888999999999999999775532 2 124457788999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
.|++++..+|. +...+..+|.++...|++++|++.++++
T Consensus 65 ~~~~al~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 65 DCRRALELDGQ-------SVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999997 4667778999999999999999988876
No 405
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=3.5e-05 Score=72.32 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCC--chHHHHHHHHHHHHcCCHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQ--TPIISCDYAQQLEMTGQHAQAL 768 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~ 768 (1324)
+.++.+|..+...|++++|+..|.+.. . ..|.. .+.++..+|..+...|+|++|+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------------~----~~p~~~~~~~~~~~lg~~~~~~~~~~~A~ 59 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFL-------------------E----LYPNGVYTPNALYWLGESYYATRNFQLAE 59 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHH-------------------H----HCSSSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------H----HCCCCcccHHHHHHHHHHHHHhccHHHHH
Confidence 456778888999999999988775521 1 12322 2378899999999999999999
Q ss_pred HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 769 SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 769 ~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
..|++++...|+. ......+..+|.++.+.|++++|++.+++.
T Consensus 60 ~~~~~~~~~~p~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 60 AQFRDLVSRYPTH----DKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998861 111455677999999999999999988876
No 406
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=1.7e-05 Score=78.11 Aligned_cols=109 Identities=11% Similarity=-0.039 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHH---------HH-hhhcccchhhHHHHHHHHcCCHHHHHHHHHhC
Q psy12365 647 SETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCL---------ES-LVEEEEDTSILCGHVAALLGNHDTAQQRYLTS 716 (1324)
Q Consensus 647 ~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l---------~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 716 (1324)
...|...|..+++.|+++.|+..|.++......... .. -.. ....+..+|.++..+|++++|+..+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~~- 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSSE- 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 456889999999999999999999987543111000 00 111 235678889999999999999986644
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCC
Q psy12365 717 DIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780 (1324)
Q Consensus 717 ~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~ 780 (1324)
|+.+ .+....++..+|.++...|+|++|+..|++++..+|.
T Consensus 89 ------------------al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 89 ------------------VLKR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp ------------------HHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred ------------------HHhc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 3322 3556788999999999999999999999999999996
No 407
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.97 E-value=0.00092 Score=69.24 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=114.3
Q ss_pred CCCCC--eeEEEEecCCCCEEEEEeCCC--cEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 11 PHGPG--DVYVCWQRRTGELLATTGRDS--SVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 11 ~h~~~--i~~~~~sp~~g~~l~~~~~~~--~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
+|+.. ...+.|+ ++.+..+++.+| .|+++|. +|+.+..+..+.........++++.|..+...++.+.+||..
T Consensus 38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 45544 4788887 466777777765 8999998 788888888665554443445577888888778999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecC------CcEEEEEEcCCCCEEEEEEcC
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLP------GLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~------~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
+.+....+.-.. .-+.+ ++++..|.+ .|.++|.. .+....+... ..+..+.|. +|...+. .-.
T Consensus 116 t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan-~w~ 190 (262)
T 3nol_A 116 NLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN-VWQ 190 (262)
T ss_dssp TCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred cCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE-Ecc
Confidence 988777664322 22334 456666666 89999976 6777776632 234557776 6765554 445
Q ss_pred CCcEEEeecccC----------------------CCeeEEEEcCCCCEEEEEeC
Q psy12365 154 SSAVNVWTLLTY----------------------TLGERISWSDDGQLLAVTTS 185 (1324)
Q Consensus 154 ~~~i~iwd~~~~----------------------~~i~~~~~s~~~~~l~~~~~ 185 (1324)
++.|.+.|..+. ...+.++|+|+++.|++.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 666766666532 14578999999888877664
No 408
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=1.3e-06 Score=103.32 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHH
Q psy12365 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECAD 826 (1324)
Q Consensus 752 ~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~ 826 (1324)
..+|..+...|+|++|+++|+++++.+|. +...+..+|.+|.+.|++++|++.++++ ++ ..+++.+|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567778899999999999999999997 5677788999999999999999999887 22 788999999
Q ss_pred HHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHH--HHHcCCHHHHHHHHHHh
Q psy12365 827 ILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKA--KEAMGSYRESVGAYERA 899 (1324)
Q Consensus 827 ~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~y~~a 899 (1324)
+|..+|++++|+..|+++... - -.++.++..++.+ +..+|++++|++.|.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~-------------------~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKV-------------------K--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-------------------S--TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHcCCHHHHHHHHHHHHHh-------------------C--CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999887531 0 0133445555555 77888999999999853
No 409
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.95 E-value=0.0012 Score=71.30 Aligned_cols=169 Identities=7% Similarity=-0.066 Sum_probs=114.6
Q ss_pred CCEEEEEeCCCcEEEEECCCcEE------EEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCC
Q psy12365 26 GELLATTGRDSSVSIYNKHGKLI------DKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRD 98 (1324)
Q Consensus 26 g~~l~~~~~~~~v~v~~~~~~~~------~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 98 (1324)
|.+|..+.. +.|+.++++|... ..+. ....+.+++|+|++..|.++...++.|..++..++...........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 345555553 4788888876432 1122 1245789999998888888876678999999987655444433335
Q ss_pred CceEEEEecCCCEEEE------EEEEEeCCCCeEEEEec-C-CcEEEEEEcCCCCEEEEEEcC--CCcEEEeeccc-C--
Q psy12365 99 PLTCLVWCKQCSMLQL------SVSIYNKHGKLIDKITL-P-GLCIVMDWDSEGDLLGIISSN--SSAVNVWTLLT-Y-- 165 (1324)
Q Consensus 99 ~v~~~~~s~~~~~l~~------~i~v~d~~g~~~~~~~~-~-~~i~~~~~~~~g~~l~~~~~~--~~~i~iwd~~~-~-- 165 (1324)
.+..++++|++..+.+ .|.+++.+|+....+.. . .....++++|++..+.+.... .+.|..++.+. .
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 6799999997655554 89999998765544432 2 467889999976666551333 46777777651 1
Q ss_pred -------CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q psy12365 166 -------TLGERISWSDDGQLLAVTTS-GGSVKIYLSK 195 (1324)
Q Consensus 166 -------~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~ 195 (1324)
.....+++++++..|+++.. .+.|.+++..
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 45778999998877766654 5678877764
No 410
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.94 E-value=0.00071 Score=76.13 Aligned_cols=177 Identities=12% Similarity=0.032 Sum_probs=110.3
Q ss_pred CCeeEEEEecCCCCEEEEEe--CCC--cEEEEECCCcEEEEEe--------CCCCEEEEEEcCCCCEEEEEEcC----CC
Q psy12365 14 PGDVYVCWQRRTGELLATTG--RDS--SVSIYNKHGKLIDKIT--------LPGLCIVMDWDSEGDLLGIISSN----SS 77 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~--~~~--~v~v~~~~~~~~~~~~--------~~~~i~~i~~~~d~~~l~~~~~~----d~ 77 (1324)
..+..++++| +|+.+++.. .++ +|...+ +|+. ..+. +-..+.+++++++|+++++-... ++
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5688999999 999988864 234 454445 5543 2221 22468999999998755543221 47
Q ss_pred eEEEEEcCCCeEEEEecC------CCCCceEEEEecCCCEE-EE--------EEEEEeCC-CCeEEEEec----------
Q psy12365 78 AVNVWNTYTKKRTIVDSG------LRDPLTCLVWCKQCSML-QL--------SVSIYNKH-GKLIDKITL---------- 131 (1324)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l-~~--------~i~v~d~~-g~~~~~~~~---------- 131 (1324)
.|.+||..+++....+.. +...+..++++|++..+ ++ .|.+||.. |+....+..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999998886544432 22356899999864443 33 68899976 544333311
Q ss_pred --------------------CCcEEEEEEcCCCCEEEEEEcCCC-cEEEeecc---c-----------------CCCeeE
Q psy12365 132 --------------------PGLCIVMDWDSEGDLLGIISSNSS-AVNVWTLL---T-----------------YTLGER 170 (1324)
Q Consensus 132 --------------------~~~i~~~~~~~~g~~l~~~~~~~~-~i~iwd~~---~-----------------~~~i~~ 170 (1324)
...+..++|+|||+.+++ +...+ .+..++.. . ...+..
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYL-SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEE-EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCCCEEEE-EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 012466888888877776 44333 44333321 0 013445
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 171 ISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 171 ~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
++++++|.++++...++.|.+|+.
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEET
T ss_pred EEECCCCCEEEEccCCCeEEEEEC
Confidence 777888777777667777777776
No 411
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.94 E-value=1.1e-08 Score=111.39 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=177.0
Q ss_pred ccchhhHHHHHHHHcCCHHHHHHHHHhCCChH---HHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHH
Q psy12365 689 EEDTSILCGHVAALLGNHDTAQQRYLTSDIPT---MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHA 765 (1324)
Q Consensus 689 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~---~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 765 (1324)
.++.|..+|......++..+|++.|.++.+|. ..++... +.|+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~--------------------------------~~~~~e 100 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAAN--------------------------------TSGNWE 100 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTT--------------------------------TSSCCT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHH--------------------------------hCCCHH
Confidence 57889999999999999999999999998664 3333322 335555
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCChHHHHHHHHHHHHccCHHHHHHHHHHhc
Q psy12365 766 QALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAG 845 (1324)
Q Consensus 766 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~y~~~~ 845 (1324)
+=+.+++-+.+.-.+ ...-..|+.+|.+.++..+-.+++..... .-...+|+-+...|.|+.|..+|....
T Consensus 101 dLv~yL~MaRk~~ke--------~~IDteLi~ayAk~~rL~elEefl~~~N~-A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 101 ELVKYLQMARKKARE--------SYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp THHHHHHTTSTTCCS--------TTTTHHHHHHHHTSCSSSTTTSTTSCCSS-SCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred HHHHHHHHHHHHhcc--------cccHHHHHHHHHhhCcHHHHHHHHcCCCc-ccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 555555554443332 12222377788888887665554443322 223578999999999999999999999
Q ss_pred CHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHH-----------------HHHHHHhhChHHHHHH
Q psy12365 846 NYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRES-----------------VGAYERAEDYDNVVRV 908 (1324)
Q Consensus 846 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A-----------------~~~y~~a~~~~~a~~~ 908 (1324)
+|.+++.++..+|+|..|.+.+++..++..|...-.+....+.+.-| +..|+..|-+++.+.+
T Consensus 172 N~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 172 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999887777755555554444333 5566666666665555
Q ss_pred HHhccC-------------------CHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHhcc
Q psy12365 909 DLDHLN-------------------DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 969 (1324)
Q Consensus 909 ~~~~~~-------------------~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~~l~~~~~ 969 (1324)
+...++ .|++..+-++--.+.--.-.+.+.+.+..-|.+++-+|.+...||.|.....+|.
T Consensus 252 lEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~ 331 (624)
T 3lvg_A 252 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 331 (624)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCC
Confidence 544332 2222222221100000001455667778889999999999999999976665553
Q ss_pred c----hhHhhhhccCCCCCCHHHHHHHHHHHHhcC
Q psy12365 970 K----LHEFGKFLLEEDEPNPVELKRLAIHFEEDK 1000 (1324)
Q Consensus 970 ~----~~~~~~~l~l~~~~~~~~~~~la~~~~~~g 1000 (1324)
. -+.+.++ +..-.+.+.+++-...|.+..
T Consensus 332 ~~Aw~h~~Fkdi--i~KVaN~EiyYKAi~FYL~e~ 364 (624)
T 3lvg_A 332 TDAWKEGQFKDI--ITKVANVELYYRAIQFYLEFK 364 (624)
T ss_dssp HHHCCGGGGTTT--GGGCSCSHHHHHHHHHHTTSC
T ss_pred hhhccHHHHHHH--HHHcchHHHHHHHHHHHHHhC
Confidence 2 1233343 223366777777776665543
No 412
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.94 E-value=0.0015 Score=73.22 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=118.3
Q ss_pred cCCCCEEEEEe-CCCcEEEEECC-C----cEEEEEe-------CC-CCEEEEEEcCCCCEEEEEEcCC------CeEEEE
Q psy12365 23 RRTGELLATTG-RDSSVSIYNKH-G----KLIDKIT-------LP-GLCIVMDWDSEGDLLGIISSNS------SAVNVW 82 (1324)
Q Consensus 23 p~~g~~l~~~~-~~~~v~v~~~~-~----~~~~~~~-------~~-~~i~~i~~~~d~~~l~~~~~~d------~~i~iw 82 (1324)
+ +++++.+.+ .++.|.++|.. . +..+.+. .. .....+..+||| .++++.. + +.|.++
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g-~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALG-NEEGEGPGGILML 169 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEE-ETTSCSCCEEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCC-CcCCCCCCeEEEE
Confidence 7 888877654 57889999973 2 4556662 11 245677889999 5554443 4 789999
Q ss_pred EcCCCeEEEEecCC--C-CCceEEEEecCCCEEEE------------------------EEEEEeCC-CCeEEEEecC--
Q psy12365 83 NTYTKKRTIVDSGL--R-DPLTCLVWCKQCSMLQL------------------------SVSIYNKH-GKLIDKITLP-- 132 (1324)
Q Consensus 83 ~~~~~~~~~~~~~~--~-~~v~~~~~s~~~~~l~~------------------------~i~v~d~~-g~~~~~~~~~-- 132 (1324)
|..+.+++...... . ..-..+.|+|+++.+++ +|.+||.. ++...++...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 99998887776422 1 22345888999988776 58999986 5666777654
Q ss_pred -CcEEEEEE--cCCCCEEEEEEc-----CCCcEEEeec-------------cc-----------------CCCeeEEEEc
Q psy12365 133 -GLCIVMDW--DSEGDLLGIISS-----NSSAVNVWTL-------------LT-----------------YTLGERISWS 174 (1324)
Q Consensus 133 -~~i~~~~~--~~~g~~l~~~~~-----~~~~i~iwd~-------------~~-----------------~~~i~~~~~s 174 (1324)
.....+.| +|+|++..+++. .+++|.+|.. .+ ...+..+.+|
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23344555 999998887444 5667755332 11 1236779999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCC
Q psy12365 175 DDGQLLAVTTS-GGSVKIYLSKL 196 (1324)
Q Consensus 175 ~~~~~l~~~~~-dg~i~~~~~~~ 196 (1324)
+||++|.++.. .+.|.+|++..
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEeCCCCEEEEEEecC
Confidence 99999998876 57899999753
No 413
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.93 E-value=0.0029 Score=66.08 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=120.2
Q ss_pred CCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEECCCcEEEEEeCC--CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC
Q psy12365 11 PHGPGDVYVCWQRRTGE-LLATTGRDSSVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK 87 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~-~l~~~~~~~~v~v~~~~~~~~~~~~~~--~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~ 87 (1324)
+-...+..++|+| +++ ++++...++.|...|.+|+.+..+... ....++++.+++. ++++.++++.+.++++...
T Consensus 24 g~~~~lSGla~~~-~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSA-QSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEET-TTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeC-CCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCC
Confidence 3345699999999 765 555577788999999999998888743 5688999998886 5455665789999987543
Q ss_pred eE---EEEec------CCCCCceEEEEecCCCEEEE-------EEEEEe--CCCCeEEEEe--------cCCcEEEEEEc
Q psy12365 88 KR---TIVDS------GLRDPLTCLVWCKQCSMLQL-------SVSIYN--KHGKLIDKIT--------LPGLCIVMDWD 141 (1324)
Q Consensus 88 ~~---~~~~~------~~~~~v~~~~~s~~~~~l~~-------~i~v~d--~~g~~~~~~~--------~~~~i~~~~~~ 141 (1324)
.. ..... ........++|+|.+..|.+ .|..|+ ..+.....+. .-..+..++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 31 11111 12334689999999876665 455555 1122222221 12356789999
Q ss_pred CCCCEEEEEEcCCCcEEEeecccC------------------CCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy12365 142 SEGDLLGIISSNSSAVNVWTLLTY------------------TLGERISWSDDGQLLAVTTSGGSVKIYL 193 (1324)
Q Consensus 142 ~~g~~l~~~~~~~~~i~iwd~~~~------------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~ 193 (1324)
|....+.+++..+..+..+|.+.. .....++|+++|+ |++.++.+.++.|.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 966555554777777777776511 2568899999997 55557777666654
No 414
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=1.3e-05 Score=75.42 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=87.4
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.+..+|.++...|++++|+..|.++. .. .+....++..+|.++...|++++|+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------~~-----~~~~~~~~~~la~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAK-------------------EL-----DPTNMTYITNQAAVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HH-----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------hc-----CCccHHHHHHHHHHHHHhccHHHHHH
Confidence 3456778888999999999998775532 11 23446788999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CChHHHHHHHHHHHHc
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NSSVLKNECADILQQF 831 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~~~~~~~l~~~~~~~ 831 (1324)
+|++++...|............+..+|.++.+.|++++|++.+++. ++......++.+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999998876411111112567778999999999999999998876 3366666666665443
No 415
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.92 E-value=0.011 Score=71.71 Aligned_cols=64 Identities=2% Similarity=-0.107 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHccchhHHHHHHHhhhcccchhhHHHHHHHHcCC---HHHHHHHHHhCC
Q psy12365 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGN---HDTAQQRYLTSD 717 (1324)
Q Consensus 645 ~~~~~~~~l~~~~l~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~~ 717 (1324)
.+...|..+.....+.++++.|..+|.++ +..... ....|...+..-...|. ++.+..+|.++-
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEra--------L~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKL--------HDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHH--------HHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 56889999999999999999999998865 333333 44556666666666677 888888877653
No 416
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.1e-05 Score=74.76 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=84.1
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHcCCHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQT---PIISCDYAQQLEMTGQHAQA 767 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A 767 (1324)
..+..+|..+...|++++|+..|.++.+ . .+.. ..++..+|..+...|++++|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----------------------~-~~~~~~~~~~~~~~a~~~~~~~~~~~A 84 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG-----------------------L-DATPQDQAVLHRNRAACHLKLEDYDKA 84 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT-----------------------S-CCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------H-cccchHHHHHHHHHHHHHHHHccHHHH
Confidence 4567788899999999999988765321 1 2222 57788999999999999999
Q ss_pred HHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHH
Q psy12365 768 LSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQ 829 (1324)
Q Consensus 768 ~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~ 829 (1324)
+..|++++...|. +...+..++.++...|++++|++.+++. ++ ..++..++.+..
T Consensus 85 ~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 85 ETEASKAIEKDGG-------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTSC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCcc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999887 4566677999999999999999998876 22 566666666543
No 417
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=1.3e-05 Score=90.13 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 820 LKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
.+..+|..+...|+|++|+..|+++......-..+...++++++...+. ..++..+|.++...|+|++|+..|.++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~----~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK----NPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH----THHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777777777777777776643322223333444444443332 247788999999999999999999884
Q ss_pred hChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 900 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 900 ~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
. .+ ...+..+++.+|.+|..+|+|++|+..|.++
T Consensus 257 l------~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 257 L------TE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp H------HH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred H------Hh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 11 1134566788999999999999999999988
No 418
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.88 E-value=3e-05 Score=70.38 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=79.6
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
.+.+..+|.++...|++++|...|.++. + . .+....++..+|.++...|++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~-------------------~----~-~~~~~~~~~~~a~~~~~~~~~~~A~~ 61 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAI-------------------Q----L-DPEESKYWLMKGKALYNLERYEEAVD 61 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHH-------------------H----H-CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------H----h-CcCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4567889999999999999999775532 1 1 23446788999999999999999999
Q ss_pred HHHHhcccCCCCCCChhhHHhhhchHHHHHHhc-CCHHHHHHHHHhcC
Q psy12365 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRV-GDFRLGIRLAAESN 816 (1324)
Q Consensus 770 ~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~ 816 (1324)
.|++++...|. ......+..++.++.+. |++++|++.+++..
T Consensus 62 ~~~~a~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 62 CYNYVINVIED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHTSCC-----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHhCcc-----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999998874 22356677799999999 99999999988763
No 419
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=1.1e-05 Score=74.30 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=66.7
Q ss_pred HcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCH
Q psy12365 760 MTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKL 834 (1324)
Q Consensus 760 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~ 834 (1324)
..|++++|+.+|++++...+. .......+.++|.+|.+.|++++|++.++++ |+ ..++..+|.++..+|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 368999999999999998532 1225677888999999999999999999887 33 88999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy12365 835 NDAVTLYESAGN 846 (1324)
Q Consensus 835 ~~A~~~y~~~~~ 846 (1324)
++|+..|+++..
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 420
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.85 E-value=0.0073 Score=68.84 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=61.7
Q ss_pred CCEEEEEeCCCcEEEEEC-CCcEEEEEeCC----------CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 26 GELLATTGRDSSVSIYNK-HGKLIDKITLP----------GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 26 g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~----------~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
+..+.+++.++.|..+|. +|+.+...... ..+.+. ...++..+.+++. ++.|..+|..+++..-...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSE-KAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEET-TSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcC-CCEEEEEECCCCCEEEEEe
Confidence 456777888899999998 78888777642 223221 2224567777777 8999999998887643332
Q ss_pred CCCCCceEEEEecCCCEEEE----EEEEEeC-CCCeEEEEec
Q psy12365 95 GLRDPLTCLVWCKQCSMLQL----SVSIYNK-HGKLIDKITL 131 (1324)
Q Consensus 95 ~~~~~v~~~~~s~~~~~l~~----~i~v~d~-~g~~~~~~~~ 131 (1324)
............ ++..++. .+..+|. +|+.......
T Consensus 131 ~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 131 VAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp CSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 222211222222 3433333 6778885 4666655543
No 421
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.84 E-value=0.0022 Score=78.06 Aligned_cols=185 Identities=8% Similarity=0.014 Sum_probs=138.2
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHH-HHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC------
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQAL-SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS------ 817 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~-~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------ 817 (1324)
+..+.++..++..+...|+.++|+ +.|++|+...|. ....+...+....+.|++++|.++++++..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~ 412 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL 412 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 557899999999999999999997 999999998886 345555678888899999999988877632
Q ss_pred ---------------------hHHHHHHHHHHHHccCHHHHHHHHHHhcC---------HHHHHHHHHHc-CCHHHHHhh
Q psy12365 818 ---------------------SVLKNECADILQQFNKLNDAVTLYESAGN---------YEKAATCYIQL-KNWTKIGQL 866 (1324)
Q Consensus 818 ---------------------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~---------~~~~~~~~~~~-~~~~~A~~~ 866 (1324)
..+|...+.+....|..+.|..+|.+|.+ +...+.+-.+. ++.+.|.++
T Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 413 AALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 23677888888899999999999999853 22333333444 448888888
Q ss_pred hhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHH
Q psy12365 867 LPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK 941 (1324)
Q Consensus 867 ~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~ 941 (1324)
++... ++.++..|+......|+.+.|-..|+++... ..+++....+ ......+-.+
T Consensus 493 fe~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~----------~~~~~~~~~l---------w~~~~~fE~~ 553 (679)
T 4e6h_A 493 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK----------ISDSHLLKMI---------FQKVIFFESK 553 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT----------SSSTTHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----------cCCHHHHHHH---------HHHHHHHHHH
Confidence 77664 6778888999998999999999999996531 1111222222 3456667777
Q ss_pred cCCHHHHHHHHHHc
Q psy12365 942 HGDFGAAIHFLILS 955 (1324)
Q Consensus 942 ~g~~~~Ai~~~~~~ 955 (1324)
.|+.+.+.+++.++
T Consensus 554 ~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 554 VGSLNSVRTLEKRF 567 (679)
T ss_dssp TCCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 88888888777665
No 422
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.82 E-value=0.00027 Score=82.28 Aligned_cols=151 Identities=15% Similarity=0.040 Sum_probs=108.1
Q ss_pred CCCCCeeEEEE-e-cCCCCEEEEEe------------------CCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEE
Q psy12365 11 PHGPGDVYVCW-Q-RRTGELLATTG------------------RDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLL 69 (1324)
Q Consensus 11 ~h~~~i~~~~~-s-p~~g~~l~~~~------------------~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l 69 (1324)
+.+.++..+++ + | +++++.+++ .++.+.++|. +.+...++...+....++.+|||+++
T Consensus 131 p~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~ 209 (595)
T 1fwx_A 131 PNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWA 209 (595)
T ss_dssp SSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEE
T ss_pred CCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEE
Confidence 34456889998 5 8 999998874 2357888997 55777777755567788899999999
Q ss_pred EEEEcCC-------------------------------------CeEEEEEcCC--CeE-EEEecCCCCCceEEEEecCC
Q psy12365 70 GIISSNS-------------------------------------SAVNVWNTYT--KKR-TIVDSGLRDPLTCLVWCKQC 109 (1324)
Q Consensus 70 ~~~~~~d-------------------------------------~~i~iw~~~~--~~~-~~~~~~~~~~v~~~~~s~~~ 109 (1324)
++++.++ +.|.|.|..+ ++. ..... ......++.++|||
T Consensus 210 ~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDG 288 (595)
T 1fwx_A 210 FSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDK 288 (595)
T ss_dssp EEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTS
T ss_pred EEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCC
Confidence 9988532 1356666655 322 22221 22346789999999
Q ss_pred CEEEE------EEEEEeCCCC-------------eEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeeccc
Q psy12365 110 SMLQL------SVSIYNKHGK-------------LIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLT 164 (1324)
Q Consensus 110 ~~l~~------~i~v~d~~g~-------------~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~ 164 (1324)
+++++ +|.++|.... ....+........++|+|+| .+.+...-++.|..||+..
T Consensus 289 k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 289 KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 99888 8999997622 33444456678899999999 5555478899999999874
No 423
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.76 E-value=0.0042 Score=68.40 Aligned_cols=178 Identities=12% Similarity=-0.003 Sum_probs=113.3
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCC-eEEEEEcCCCeEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSS-AVNVWNTYTKKRTIV 92 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~-~i~iw~~~~~~~~~~ 92 (1324)
.....++|+| +|+++++-..++.|..||.+++....+...+.+.+++++++|+.+++....++ .|..++..+++....
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 5578899999 99977766678899999998877666666678899999999996555433122 477778777766543
Q ss_pred ec-CCCCCceEEEEecCCCEEEE-----EEEEEeCCCCeEEEE---------ec-C--CcEEEEEEcCCCCEEEEEEcCC
Q psy12365 93 DS-GLRDPLTCLVWCKQCSMLQL-----SVSIYNKHGKLIDKI---------TL-P--GLCIVMDWDSEGDLLGIISSNS 154 (1324)
Q Consensus 93 ~~-~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~g~~~~~~---------~~-~--~~i~~~~~~~~g~~l~~~~~~~ 154 (1324)
.. ........++..+++..+++ .|.++|..+...... .. . .....+ +|+|..+.+.-+..
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 32 12223345555555544444 788888653211111 00 1 123445 78888776646677
Q ss_pred CcEEEeeccc-C-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 155 SAVNVWTLLT-Y-----------TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 155 ~~i~iwd~~~-~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
+.|..++... . ..+..++++++|.+.++....+.|.+++.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred CEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 8899998762 1 23445777778766555445566666654
No 424
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.76 E-value=0.00075 Score=73.92 Aligned_cols=180 Identities=4% Similarity=-0.121 Sum_probs=129.7
Q ss_pred ccchhhHHHHHHHHcC-CHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHc-C-CHH
Q psy12365 689 EEDTSILCGHVAALLG-NHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMT-G-QHA 765 (1324)
Q Consensus 689 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~~ 765 (1324)
....+...+.+...+| .+++++.++.++. ...+....++...+.++... + +++
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L------------------------~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFA------------------------VQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------------HTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3455677778887777 4777777654321 24566678888889888888 8 999
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHH--------HHHHHHHhcCC-----hHHHHHHHHHHHHcc
Q psy12365 766 QALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFR--------LGIRLAAESNS-----SVLKNECADILQQFN 832 (1324)
Q Consensus 766 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~-----~~~~~~l~~~~~~~g 832 (1324)
++++++.+++..+|. +..++.....+..+.|.++ ++++++.++.+ ..+|+..+.++...+
T Consensus 143 ~EL~~~~k~L~~dpk-------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHTSSCTT-------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 999999999999998 4555555566666666666 88888776622 789999999999998
Q ss_pred C-------HHHHHHHHHHhcC--------HHHHHHHHHHcCC------------------------HHHHHhhhhcc---
Q psy12365 833 K-------LNDAVTLYESAGN--------YEKAATCYIQLKN------------------------WTKIGQLLPHI--- 870 (1324)
Q Consensus 833 ~-------~~~A~~~y~~~~~--------~~~~~~~~~~~~~------------------------~~~A~~~~~~~--- 870 (1324)
+ ++++++++.++.. +.....++.+.|+ .+.+.+++...
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 7 7899999988764 3333344444443 22334444432
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 871 ----KSATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 871 ----~~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
.++.++..+|.+|..+|+.++|+++|...
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36778888999999999999999999884
No 425
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.75 E-value=0.0018 Score=67.01 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=108.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
...+.|+ ++.+..+.+.+|.|+++|. +|+.+..+ .+.........++++.|..+...++.+.+||..+.+....+.
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4678887 4667777788889999998 77777777 555443333344566777777668999999999998877765
Q ss_pred CCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecC------CcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 95 GLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLP------GLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 95 ~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~------~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
.. ..-+.++ +++..|.+ .|.++|.. .+...++... ..++.+.|. +|...+. .-.++.|.+.|.
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw~s~~I~vIDp 208 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IWHSSDVLEIDP 208 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTCSEEEEECT
T ss_pred CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-ECCCCeEEEEeC
Confidence 32 2234554 55666655 89999976 5666666632 144667776 6765544 445566766666
Q ss_pred ccC-----------------------CCeeEEEEcCCCCEEEEEe
Q psy12365 163 LTY-----------------------TLGERISWSDDGQLLAVTT 184 (1324)
Q Consensus 163 ~~~-----------------------~~i~~~~~s~~~~~l~~~~ 184 (1324)
.+. ...+.|+|+|+++.|++.+
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 532 2457899999877766655
No 426
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.3e-05 Score=72.84 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC----------
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS---------- 817 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------- 817 (1324)
...+..+|..+...|+|++|++.|++++...|. +...+..+|.++.+.|++++|++.+++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 356788999999999999999999999999997 455666788888888888888888877622
Q ss_pred -hHHHHHHHHHHHHccCHHHHHHHHH
Q psy12365 818 -SVLKNECADILQQFNKLNDAVTLYE 842 (1324)
Q Consensus 818 -~~~~~~l~~~~~~~g~~~~A~~~y~ 842 (1324)
..++..+|..+..+|++++|+..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 3345566666666665555544433
No 427
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.73 E-value=0.0076 Score=61.88 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCCC--CeeEEEEecCCCCEEEEEeCC--CcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 11 PHGP--GDVYVCWQRRTGELLATTGRD--SSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 11 ~h~~--~i~~~~~sp~~g~~l~~~~~~--~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
+|.. ....+.|++ +.+..+.+.+ +.|+.+|. +|+.+..+..+.........++++.|......++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 4544 466899985 5566666664 48999998 788888888665544444444567777777778999999999
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecC------CcEEEEEEcCCCCEEEEEEcC
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLP------GLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~------~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
+.+....+... ..-+.++ +++..|.+ .|.++|.. .+...++... ..++.+.|. +|...+. .-.
T Consensus 94 tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan-vw~ 168 (243)
T 3mbr_X 94 TLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN-VWL 168 (243)
T ss_dssp TTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred cCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE-ECC
Confidence 99887776532 2235555 45555544 99999976 5666666532 244556665 5554444 334
Q ss_pred CCcEEEeecccC-----------------------CCeeEEEEcCCCCEEEEEeC
Q psy12365 154 SSAVNVWTLLTY-----------------------TLGERISWSDDGQLLAVTTS 185 (1324)
Q Consensus 154 ~~~i~iwd~~~~-----------------------~~i~~~~~s~~~~~l~~~~~ 185 (1324)
+..|.+.|..+. ...+.++|+|+++.|.+.+.
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 455555555421 24577999998887776653
No 428
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.69 E-value=0.0017 Score=71.15 Aligned_cols=136 Identities=5% Similarity=-0.060 Sum_probs=99.7
Q ss_pred HHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC-CHHHHHHHHHhc----CC-hHHHHHHHHHHH
Q psy12365 756 QQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG-DFRLGIRLAAES----NS-SVLKNECADILQ 829 (1324)
Q Consensus 756 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~----~~-~~~~~~l~~~~~ 829 (1324)
.++...+..++|++++++++..+|+ +..+++.-+.++..+| +++++++++.++ ++ ..+|+.-+.++.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445567899999999999998 4555666777888888 599999888776 33 788998898888
Q ss_pred Hc-c-CHHHHHHHHHHhcC--------HHHHHHHHHHcCCHH--------HHHhhhhccC-----CHHHHHHHHHHHHHc
Q psy12365 830 QF-N-KLNDAVTLYESAGN--------YEKAATCYIQLKNWT--------KIGQLLPHIK-----SATTFIQYAKAKEAM 886 (1324)
Q Consensus 830 ~~-g-~~~~A~~~y~~~~~--------~~~~~~~~~~~~~~~--------~A~~~~~~~~-----~~~~~~~~a~~~~~~ 886 (1324)
.. + ++++++.+++++.+ +..-.-++.+.+.++ +++++.++.. +..++.+.+.++...
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 87 7 88999999999876 333333444444455 7777766544 667888888888887
Q ss_pred CC-------HHHHHHHHHH
Q psy12365 887 GS-------YRESVGAYER 898 (1324)
Q Consensus 887 g~-------~~~A~~~y~~ 898 (1324)
+. ++++++++.+
T Consensus 215 ~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILK 233 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHH
Confidence 76 6777777766
No 429
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.68 E-value=0.011 Score=66.18 Aligned_cols=97 Identities=15% Similarity=-0.101 Sum_probs=69.4
Q ss_pred CCCEEEEEEcCCC----eEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE-E--------------EEEEeCC-CC
Q psy12365 65 EGDLLGIISSNSS----AVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL-S--------------VSIYNKH-GK 124 (1324)
Q Consensus 65 d~~~l~~~~~~d~----~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~--------------i~v~d~~-g~ 124 (1324)
+...+.+...+++ .|.+.|..+++....+..-..+ .+.++|||+.+.+ + |.+||.. ++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3345556555455 8889999999887666443444 7999999998877 2 8899976 77
Q ss_pred eEEEEecC--------CcEEEEEEcCCCCEEEEEEcC--CCcEEE--eeccc
Q psy12365 125 LIDKITLP--------GLCIVMDWDSEGDLLGIISSN--SSAVNV--WTLLT 164 (1324)
Q Consensus 125 ~~~~~~~~--------~~i~~~~~~~~g~~l~~~~~~--~~~i~i--wd~~~ 164 (1324)
...++..+ .....+.++|||+++++ +.. +..+.+ +|..+
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyV-an~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLF-FLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE-EECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEE-EccCCCCeEEEEEEchhh
Confidence 77777644 23557889999988887 542 456777 88764
No 430
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=1.5e-05 Score=73.43 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
+....++..+|.++...|+|++|+..|++++..+|+ +...+..+|.++.+.|++++|++.+++.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-------HQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344578899999999999999999999999999997 4566777999999999999999988876
No 431
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=7.9e-05 Score=64.54 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-h
Q psy12365 744 SNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-S 818 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~ 818 (1324)
++.....+..+|..+...|++++|+.+|++++...|. +...+..++.++.+.|++++|++.+++. +. .
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 3445577889999999999999999999999999886 3455667888888899999988887775 22 6
Q ss_pred HHHHHHHHHHHHcc
Q psy12365 819 VLKNECADILQQFN 832 (1324)
Q Consensus 819 ~~~~~l~~~~~~~g 832 (1324)
.++..+|.++..+|
T Consensus 78 ~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 77777887776543
No 432
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=1.5e-05 Score=72.49 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
+.+..+|.++...|++++|+..|.++ +.. .+..+.++..+|.++...|++++|++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~a-------------------l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQL-------------------ITA-----QPQNPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHH-------------------HHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-------------------Hhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45677889999999999999977553 221 344578889999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN 816 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 816 (1324)
|++++..+|+.. ........+..++.++...|+++.|++.+++.+
T Consensus 61 ~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 61 CQQGLRYTSTAE-HVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHTSCSSTT-SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 999999999710 001114556668888888888888777666554
No 433
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.65 E-value=2.5e-05 Score=88.96 Aligned_cols=166 Identities=11% Similarity=0.005 Sum_probs=88.7
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCcEEEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCC-Cc-e
Q psy12365 25 TGELLATTGRDSSVSIYNK-HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRD-PL-T 101 (1324)
Q Consensus 25 ~g~~l~~~~~~~~v~v~~~-~~~~~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~v-~ 101 (1324)
++..+++++.||.|..||. +|+.+..+.. +.+.+..+.+++..+++++. |+.|+.||..+++.......+.. .+ .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~-dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPN-DGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTT-TCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCC-CCEEEEEECCCCceeeeeeccCcccccc
Confidence 5778899999999999996 8898888776 55555556667777776656 99999999977765333322210 01 0
Q ss_pred EEEEecCCCEEEE-----EEEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccCCCeeEEE---
Q psy12365 102 CLVWCKQCSMLQL-----SVSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERIS--- 172 (1324)
Q Consensus 102 ~~~~s~~~~~l~~-----~i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~~~i~~~~--- 172 (1324)
......++ .+++ .+..||.. |+....+...+ ...++|++..+++ ++.++.|..||..+...++...
T Consensus 86 sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYL-GRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-------------------------EEE-EEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEE-EecCCEEEEEECCCCCEEEeEeccc
Confidence 11111233 3333 78899976 77766665433 2345678888888 8889999999998654444432
Q ss_pred -----EcCCC---CEEEEEeCCCcEEEEEcCCC
Q psy12365 173 -----WSDDG---QLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 173 -----~s~~~---~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+++++ ..+++++.+|.+..||....
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 22222 46777889999999987654
No 434
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.00013 Score=69.14 Aligned_cols=83 Identities=11% Similarity=-0.015 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHh----cCCHHHHHHHHHhcC---ChHHHHHHHH
Q psy12365 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR----VGDFRLGIRLAAESN---SSVLKNECAD 826 (1324)
Q Consensus 754 ~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~---~~~~~~~l~~ 826 (1324)
+|.+|...+.+++|+++|+++.+... ..+...|+.+|.. .+++++|+++++++. ...+.+.+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~ 101 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88888888888889999999877533 4556678888887 788999998888873 3788888999
Q ss_pred HHHH----ccCHHHHHHHHHHhc
Q psy12365 827 ILQQ----FNKLNDAVTLYESAG 845 (1324)
Q Consensus 827 ~~~~----~g~~~~A~~~y~~~~ 845 (1324)
+|.. .+++++|..+|+++.
T Consensus 102 ~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 102 KQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHCCCCCCcCHHHHHHHHHHHH
Confidence 9888 888999988888875
No 435
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.63 E-value=0.00066 Score=84.71 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=92.3
Q ss_pred CCCCeeEEEEecCCCCEEEEEeC----CCcEEEEECCCc--EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCC---CeEEE
Q psy12365 12 HGPGDVYVCWQRRTGELLATTGR----DSSVSIYNKHGK--LIDKIT-LPGLCIVMDWDSEGDLLGIISSNS---SAVNV 81 (1324)
Q Consensus 12 h~~~i~~~~~sp~~g~~l~~~~~----~~~v~v~~~~~~--~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d---~~i~i 81 (1324)
|......+.||| ||++|+.... ++.|+++|.++. ....+. +.+..... |+++|..|++.+..+ +.|..
T Consensus 232 ~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 232 QHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp GCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred CCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 455578899999 9999876543 248999997432 344454 44444444 788888888776533 67999
Q ss_pred EEcCCCeE--EEEecCCCCCceEEEEecCCCEEEE--------EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEE
Q psy12365 82 WNTYTKKR--TIVDSGLRDPLTCLVWCKQCSMLQL--------SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGI 149 (1324)
Q Consensus 82 w~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~ 149 (1324)
+++.++.. .+.+..|...+. .|++++..|+. .|.+||.+|.....+.. .+.+..+.++|++..+++
T Consensus 310 ~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~ 387 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387 (693)
T ss_dssp EETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred EeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEE
Confidence 99987643 223446666554 89999988876 68899988877766653 345666777777776655
No 436
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.62 E-value=0.0016 Score=75.74 Aligned_cols=177 Identities=8% Similarity=-0.061 Sum_probs=123.6
Q ss_pred eEEEE---ecCCCCEEEEEeC-CCcEEEEECC-CcEEEEEe--CCCCEEEEEE-c-CCCCEEEEEEc-------------
Q psy12365 17 VYVCW---QRRTGELLATTGR-DSSVSIYNKH-GKLIDKIT--LPGLCIVMDW-D-SEGDLLGIISS------------- 74 (1324)
Q Consensus 17 ~~~~~---sp~~g~~l~~~~~-~~~v~v~~~~-~~~~~~~~--~~~~i~~i~~-~-~d~~~l~~~~~------------- 74 (1324)
..+++ .| ||+++.+... ++.|.+.|.. .+....+. ....+..+++ + |++.++.+++.
T Consensus 90 ~~~s~t~g~~-DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKY-DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCc-CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 34555 34 7788777654 5569999984 46555444 3456889998 5 99999988852
Q ss_pred ----CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE--------------------E---------------
Q psy12365 75 ----NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL--------------------S--------------- 115 (1324)
Q Consensus 75 ----~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--------------------~--------------- 115 (1324)
.++.+.+.|..+.+......- .+....+..+|+|+++.+ .
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 145899999998876544331 124567889999988776 1
Q ss_pred --------EEEEeCC---CCe-EEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC------------------
Q psy12365 116 --------VSIYNKH---GKL-IDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY------------------ 165 (1324)
Q Consensus 116 --------i~v~d~~---g~~-~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~------------------ 165 (1324)
|.+.|.. ++. +..+.......++.++|||+++++.+..+.+|.++|..+.
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 3444433 222 3444444456789999999988885678899999998821
Q ss_pred ---CCeeEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q psy12365 166 ---TLGERISWSDDGQLLA-VTTSGGSVKIYLSKL 196 (1324)
Q Consensus 166 ---~~i~~~~~s~~~~~l~-~~~~dg~i~~~~~~~ 196 (1324)
..+..++|+||| .+. +..-|+.|.+|+...
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 467889999999 554 455689999999754
No 437
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.00028 Score=66.87 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcC---ChHHHHHHHHHHHH----ccCH
Q psy12365 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN---SSVLKNECADILQQ----FNKL 834 (1324)
Q Consensus 762 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~l~~~~~~----~g~~ 834 (1324)
+++++|+++|+++.+.... ... |+.+|...+.+++|+++++++. +..+.+.+|.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-------~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-------FGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-------THH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCH-------hhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccH
Confidence 5789999999999887654 122 8899999999999999998873 38899999999998 8999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhh
Q psy12365 835 NDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEA----MGSYRESVGAYERAE 900 (1324)
Q Consensus 835 ~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~y~~a~ 900 (1324)
++|..+|+++.+ ..++.....+|.+|.. .+++++|+.+|++|-
T Consensus 78 ~~A~~~~~~Aa~-----------------------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 78 RKAAQYYSKACG-----------------------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHHHHH-----------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 999999988731 1356778889999998 899999999999964
No 438
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00012 Score=64.91 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=48.3
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
++.+.++..+|.++...|+|++|+..|++++..+|. +...+..+|.+|.+.|++++|++.+++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-------YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455678899999999999999999999999999997 3334555666666666666666655544
No 439
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.55 E-value=0.0051 Score=68.31 Aligned_cols=168 Identities=11% Similarity=0.013 Sum_probs=108.5
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC---------------------CCCEEEEEEcCCCCEEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---------------------PGLCIVMDWDSEGDLLGII 72 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~---------------------~~~i~~i~~~~d~~~l~~~ 72 (1324)
....+++|++ +|+++.++..++.|..|+..+..+..+.. .+.+.++++++++..|.++
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 4567899999 99977778888999999987654444431 1357899999843456566
Q ss_pred EcCCCeEEEEEcCCCeEEEEecC----CCCCceEEEEec-CCCEEEE----------------------EEEEEeCCCCe
Q psy12365 73 SSNSSAVNVWNTYTKKRTIVDSG----LRDPLTCLVWCK-QCSMLQL----------------------SVSIYNKHGKL 125 (1324)
Q Consensus 73 ~~~d~~i~iw~~~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~----------------------~i~v~d~~g~~ 125 (1324)
.. .+.|..+|..++........ ....+..+.+.| +|.+.++ .|..||..+..
T Consensus 98 d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 55 45588888776644332211 113468899999 8987664 26667765333
Q ss_pred EEEEe-cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEcCCCCEEEEE
Q psy12365 126 IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWSDDGQLLAVT 183 (1324)
Q Consensus 126 ~~~~~-~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~ 183 (1324)
...+. .-.....++|+|+|+.+.+.-+..+.|..++.... ..+..++++++|.+.++.
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSCEEEEE
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCCEEEEe
Confidence 33221 11234578999999977662466788888887621 115667788888755443
No 440
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.54 E-value=0.00023 Score=81.63 Aligned_cols=96 Identities=8% Similarity=-0.035 Sum_probs=71.4
Q ss_pred HcCCHHHHHHHHHHhhChHHHHHHHHhccC--CHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q psy12365 885 AMGSYRESVGAYERAEDYDNVVRVDLDHLN--DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF 962 (1324)
Q Consensus 885 ~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~~~~~~A~ 962 (1324)
..|+|++|+.+|++ ++.+..+.++ ++..+.. +.+||.+|..+|+|++|+.+|.++
T Consensus 310 ~~g~~~eA~~~~~~------~L~i~~~~lg~~Hp~~a~~----------~~nLa~~y~~~g~~~eA~~~~~~a------- 366 (433)
T 3qww_A 310 HYKSPSELLEICEL------SQEKMSSVFEDSNVYMLHM----------MYQAMGVCLYMQDWEGALKYGQKI------- 366 (433)
T ss_dssp TTSCHHHHHHHHHH------HHHHHTTTBCTTSHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred hccCHHHHHHHHHH------HHHHhhCccChhchHHHHH----------HHHHHHHHHhhcCHHHHHHHHHHH-------
Confidence 46789999999988 5555555444 4444433 578999999999999999999988
Q ss_pred HHHHhccchhHhhhhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12365 963 NLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYH 1011 (1324)
Q Consensus 963 ~l~~~~~~~~~~~~~l~l~~~~~~~~~~~la~~~~~~g~~~~A~~~y~~ 1011 (1324)
++.+.+.+....|.....++.||..|..+|++++|..+|.+
T Consensus 367 --------L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 367 --------IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp --------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 55555662222445577889999998888888888887765
No 441
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.51 E-value=0.027 Score=63.02 Aligned_cols=180 Identities=7% Similarity=-0.099 Sum_probs=122.2
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIV 92 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~ 92 (1324)
++..|.+..+ ++ +|+.+ ....|+..+.+|.....+. ....+..++|++.+..|..+....+.|..++..++....+
T Consensus 34 d~~~C~~~~~-~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSS-CC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCccccccc-Cc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 4456666665 44 44333 3456888888776554443 4456889999998888887776578999999987765554
Q ss_pred ecCCCCCceEEEEecCCCEEE-E-----EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEcCC-CcEEEeecc
Q psy12365 93 DSGLRDPLTCLVWCKQCSMLQ-L-----SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISSNS-SAVNVWTLL 163 (1324)
Q Consensus 93 ~~~~~~~v~~~~~s~~~~~l~-~-----~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~~~-~~i~iwd~~ 163 (1324)
.......+..+++.+.+..|. + .|.+.+.+|.....+.. -.....++++|.+..|...-... +.|...+++
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 443334568899998655544 4 89999998876555542 24578899999776666524444 678777766
Q ss_pred -cC---------CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q psy12365 164 -TY---------TLGERISWSDDGQLLAVTTS-GGSVKIYLSKL 196 (1324)
Q Consensus 164 -~~---------~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~~ 196 (1324)
+. .....++|+|++..|.++.. .+.|..++...
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 11 45788999987777776654 46677777543
No 442
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.49 E-value=0.0022 Score=80.45 Aligned_cols=139 Identities=10% Similarity=0.017 Sum_probs=87.0
Q ss_pred CCCC-CeeEEEEe-cCCCCEEEEEeC-CC----cEEEEECCCc-E-EE-EEeCCCCEEEEEEcCCCCEEEEEEcCC----
Q psy12365 11 PHGP-GDVYVCWQ-RRTGELLATTGR-DS----SVSIYNKHGK-L-ID-KITLPGLCIVMDWDSEGDLLGIISSNS---- 76 (1324)
Q Consensus 11 ~h~~-~i~~~~~s-p~~g~~l~~~~~-~~----~v~v~~~~~~-~-~~-~~~~~~~i~~i~~~~d~~~l~~~~~~d---- 76 (1324)
+|+- .+..++|| | ||++||.+.. +| .|+++|+.+. . +. .+ +....++.|+|||+.|+.+.. +
T Consensus 170 ~~~~~~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~-d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTK-DETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEE-CTTCC
T ss_pred CCCeEEEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEE-CCCCC
Confidence 3443 57789999 9 9999987654 22 4999998543 2 11 11 112346889999998888775 3
Q ss_pred -CeEEEEEcCCCe--EEEEec-CCCCCceEEEEecCCCEEEE--------EEEEEeCCCC--eE--EEEe--cCCcEEEE
Q psy12365 77 -SAVNVWNTYTKK--RTIVDS-GLRDPLTCLVWCKQCSMLQL--------SVSIYNKHGK--LI--DKIT--LPGLCIVM 138 (1324)
Q Consensus 77 -~~i~iw~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~--------~i~v~d~~g~--~~--~~~~--~~~~i~~~ 138 (1324)
..|+.+++.++. ...++. ........+.|||||++|+. .|.++|..+. .. ..+. ..+...++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 268888887663 123332 23344678899999999877 6888887642 22 3332 22344555
Q ss_pred EEcCCCCEEEEEEcCC
Q psy12365 139 DWDSEGDLLGIISSNS 154 (1324)
Q Consensus 139 ~~~~~g~~l~~~~~~~ 154 (1324)
.|+. |..|++.+..+
T Consensus 326 ~~~~-g~~l~~~t~~~ 340 (751)
T 2xe4_A 326 QMHG-TSHLVILTNEG 340 (751)
T ss_dssp EEET-TTEEEEEECTT
T ss_pred eeee-CCEEEEEeCCC
Confidence 5543 66555524443
No 443
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.48 E-value=0.011 Score=67.24 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=104.9
Q ss_pred CCeeEEEEecCCCCEEEEEe-CCCcEEEEECCCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 14 PGDVYVCWQRRTGELLATTG-RDSSVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
..+..++|++ .+..|..+. ..+.|..++.+|.....+. .......+++++.+..|..+....+.|.+.+..+....
T Consensus 116 ~~~~gl~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 116 ENAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CccEEEEEec-CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3477899998 665555554 5678999999876554443 22356778899877777777665788999988766544
Q ss_pred EEecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEecC--CcEEEEEEcCCCCEEEEEEcCCCcEEEee
Q psy12365 91 IVDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWT 161 (1324)
Q Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~~--~~i~~~~~~~~g~~l~~~~~~~~~i~iwd 161 (1324)
............++++|.+..|.. .|..++.+|.....+... .....++|+|++..|.+.-+..+.|..++
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 444444456899999997665544 678888888766655432 34688999988777776356667788887
Q ss_pred cc
Q psy12365 162 LL 163 (1324)
Q Consensus 162 ~~ 163 (1324)
.+
T Consensus 275 ~d 276 (386)
T 3v65_B 275 LD 276 (386)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 444
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.47 E-value=0.019 Score=64.27 Aligned_cols=148 Identities=11% Similarity=-0.024 Sum_probs=104.3
Q ss_pred CeeEEEEecCCCCEEEEEe-CCCcEEEEECCCcEEEEEe--CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 15 GDVYVCWQRRTGELLATTG-RDSSVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~~~~~~~--~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
.+..++|++ .+..|..+. ..+.|..++.+|.....+. ......++++++.+..|..+....+.|.+.+.++.....
T Consensus 74 ~~~~l~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 74 NAIALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp CEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ceEEEEEec-cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 467899998 666655554 5678999998776544443 224567899998777777776657899999988765444
Q ss_pred EecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 92 VDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
...........++++|.+..|.. .|..++.+|.....+.. -.....++|+|++..|.+.-+..+.|..+++
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 44444456799999996555544 67788888876555532 2356889999988777763556677888877
Q ss_pred c
Q psy12365 163 L 163 (1324)
Q Consensus 163 ~ 163 (1324)
+
T Consensus 233 d 233 (349)
T 3v64_C 233 D 233 (349)
T ss_dssp T
T ss_pred C
Confidence 6
No 445
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.0002 Score=82.08 Aligned_cols=88 Identities=6% Similarity=-0.026 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHhcccCCCCC-CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-------------hHHHHHHH
Q psy12365 760 MTGQHAQALSFYQKSMELATPDI-QDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-------------SVLKNECA 825 (1324)
Q Consensus 760 ~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~l~ 825 (1324)
..|+|++|+.+|++++....... .........+.+||.+|..+|+|++|+.+++++.+ ...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45899999999999987643311 12234567788899999999999999999888632 55788999
Q ss_pred HHHHHccCHHHHHHHHHHhcCH
Q psy12365 826 DILQQFNKLNDAVTLYESAGNY 847 (1324)
Q Consensus 826 ~~~~~~g~~~~A~~~y~~~~~~ 847 (1324)
.+|..+|++++|+.+|+++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 446
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.45 E-value=0.035 Score=61.15 Aligned_cols=149 Identities=11% Similarity=-0.091 Sum_probs=101.9
Q ss_pred CCeeEEEEecCCCCEEEEEe-CCCcEEEEECCC----cEEEE-Ee-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 14 PGDVYVCWQRRTGELLATTG-RDSSVSIYNKHG----KLIDK-IT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~----~~~~~-~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+..+.|++ .++.|..+. .++.|..++.+| ..... +. .-....++++++.+..|..+...++.|.+.+..+
T Consensus 30 ~~p~g~~~d~-~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 30 RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEe-CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 4567899998 766665554 468899999876 33222 22 2245678999987777777766578999999987
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
.....+..........++++|.+..|.. .|..++.+|.....+.. -.....++|+|++..|.++-+..+.|
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 6554444434456799999996555443 67778888877665532 24567899999888777635566788
Q ss_pred EEeecc
Q psy12365 158 NVWTLL 163 (1324)
Q Consensus 158 ~iwd~~ 163 (1324)
..+|.+
T Consensus 189 ~~~d~d 194 (316)
T 1ijq_A 189 SSIDVN 194 (316)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 888876
No 447
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.00054 Score=62.45 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
+..+.++..+|.++...|++++|+..|++++..+|. ....+..+|.+|...|++++|+..+++.
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-------YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677788888888888888888888888888776 2334445666666666666666655544
No 448
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.37 E-value=0.045 Score=62.18 Aligned_cols=101 Identities=7% Similarity=0.042 Sum_probs=62.3
Q ss_pred EEecCcceEEEEEecCcEEEEEeCCceeeeeec-CCC-CeeEEeeCCCccEEEEEEeCCCeEEEecCCCceeccCCC-CC
Q psy12365 455 TQAMSEEFLFFATSEYELKIFSLSEWKFVSGYK-HSD-KIKSIYPDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEF-PP 531 (1324)
Q Consensus 455 ~i~~~~~~li~~~~~g~i~~~~l~~~~~~~~~~-~~~-~i~~i~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 531 (1324)
.....++.+++++.+|.|..++..+++.+.... ... .+....+ .+.+|.+.+.+|.++++++.+++..-.... ..
T Consensus 272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~ 349 (376)
T 3q7m_A 272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS 349 (376)
T ss_dssp EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT
T ss_pred CceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence 344557778888888999999998888776654 211 1111112 356788888889999999988876422111 11
Q ss_pred CcceEEEecCCCCCcEEEEEeCCeEEEEE
Q psy12365 532 ATEEVLWDTVPVDRNVFVCCSKTSVVTYL 560 (1324)
Q Consensus 532 ~~~~~~w~~~~~~~~l~v~~~~~~i~v~~ 560 (1324)
.+.. .....+..+++...++.++.|.
T Consensus 350 ~~~~---~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 350 GFQT---EPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CBCS---CCEEETTEEEEEBTTSCEEEEE
T ss_pred ccee---CCEEECCEEEEEeCCCEEEEEe
Confidence 1111 0011456777777777777764
No 449
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.00026 Score=64.66 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc----CC-hHHHHHHHHHHHHccCHHHHHH
Q psy12365 765 AQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES----NS-SVLKNECADILQQFNKLNDAVT 839 (1324)
Q Consensus 765 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~ 839 (1324)
++|++.|++++..+|. +...+..+|.+|...|++++|++.+++. ++ ..++..+|.++..+|++++|..
T Consensus 2 ~~a~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3688999999999997 4567778999999999999999998886 22 7889999999999999999999
Q ss_pred HHHHhcC
Q psy12365 840 LYESAGN 846 (1324)
Q Consensus 840 ~y~~~~~ 846 (1324)
.|+++..
T Consensus 75 ~~~~al~ 81 (115)
T 2kat_A 75 AWESGLA 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 450
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00076 Score=77.51 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=71.6
Q ss_pred HHHHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccC------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12365 826 DILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK------SATTFIQYAKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 826 ~~~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~a~~~~~~g~~~~A~~~y~~a 899 (1324)
.-+..+|+|++|+.+|+++.. ..++.. -...+..+|.+|..+|+|++|+.+|++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~-------------------~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~- 354 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIIS-------------------SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR- 354 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT-------------------CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHhhccHHHHHHHHHHHHH-------------------hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH-
Confidence 345577888888888776642 222222 234667789999999999999999999
Q ss_pred hChHHHHHHHHhcc--CCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 900 EDYDNVVRVDLDHL--NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 900 ~~~~~a~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
++.++.+.+ ..|+.+.. +++||.+|..+|+|++|+.+|.++
T Consensus 355 -----~L~i~~~~lg~~Hp~~a~~----------l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 355 -----TMEPYRIFFPGSHPVRGVQ----------VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp -----HHHHHHHHSCSSCHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHhHHHHcCCCChHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 556665544 45666555 578999999999999999999988
No 451
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.33 E-value=0.058 Score=59.31 Aligned_cols=167 Identities=10% Similarity=-0.107 Sum_probs=109.9
Q ss_pred EEEEEeCCCcEEEEECCCcE-EEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC----CeEEEEecCCCCCceE
Q psy12365 28 LLATTGRDSSVSIYNKHGKL-IDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT----KKRTIVDSGLRDPLTC 102 (1324)
Q Consensus 28 ~l~~~~~~~~v~v~~~~~~~-~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~ 102 (1324)
+|+.+. ...|+..|.++.. ...+.....+.+++|++++..|..+...++.|..++..+ .....+.......+..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 444444 4568889986643 333344567889999998888887776578999999876 2323333323345689
Q ss_pred EEEecCCCEE-EE-----EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEcCC-CcEEEeecc-cC-------
Q psy12365 103 LVWCKQCSML-QL-----SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISSNS-SAVNVWTLL-TY------- 165 (1324)
Q Consensus 103 ~~~s~~~~~l-~~-----~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~~~-~~i~iwd~~-~~------- 165 (1324)
+++.+.+..| .+ .|.+++.+|+....+.. -.....++.+|.+..+....... +.|...+++ +.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~ 161 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC
Confidence 9999765544 44 89999998876655542 34678899999777666523333 677777665 11
Q ss_pred --CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy12365 166 --TLGERISWSDDGQLLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 166 --~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~ 195 (1324)
.....++|++++..|+++. ..+.|..++..
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 4567899998877777665 44677777765
No 452
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.32 E-value=0.00043 Score=59.73 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q psy12365 691 DTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSF 770 (1324)
Q Consensus 691 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 770 (1324)
..+..+|.++...|++++|+..|.++ +. . .+....++..+|.++...|++++|+.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a-------------------~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKA-------------------LE----L-DPNNAEAWYNLGNAYYKQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH----H-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH-------------------Hh----c-CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45677888999999999999977553 22 1 234467889999999999999999999
Q ss_pred HHHhcccCCCCCCChhhHHhhhchHHHHHHhcC
Q psy12365 771 YQKSMELATPDIQDPECQRKCKEGIARTSIRVG 803 (1324)
Q Consensus 771 y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 803 (1324)
|++++..+|. +...+..++.++.+.|
T Consensus 66 ~~~a~~~~p~-------~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPN-------NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTT-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCC-------CHHHHHHHHHHHHhcC
Confidence 9999999987 3455566777776543
No 453
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.32 E-value=0.029 Score=63.70 Aligned_cols=177 Identities=7% Similarity=-0.089 Sum_probs=118.3
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
..|.+..+ .+ +|+.+ ....|+.++.++.....+. ....+..++|++.+..|..+....+.|..++..++....+..
T Consensus 79 ~~C~~~~~-~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSS-CC-EEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccc-cc-eeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 44555544 33 44433 3456888888775544443 446688999999887887777657899999998776555544
Q ss_pred CCCCCceEEEEecCCCEEEE------EEEEEeCCCCeEEEEecC--CcEEEEEEcCCCCEEEEEEcCC-CcEEEeeccc-
Q psy12365 95 GLRDPLTCLVWCKQCSMLQL------SVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNS-SAVNVWTLLT- 164 (1324)
Q Consensus 95 ~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g~~~~~~~~~--~~i~~~~~~~~g~~l~~~~~~~-~~i~iwd~~~- 164 (1324)
........+++.+.+..|.. .|.+.+.+|.....+... .....++++|.+..|.+.-... +.|...+++.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 33345678999986555544 788889888765555422 4578899999777666623344 6777777661
Q ss_pred C---------CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q psy12365 165 Y---------TLGERISWSDDGQLLAVTTS-GGSVKIYLSK 195 (1324)
Q Consensus 165 ~---------~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~ 195 (1324)
. .....++|+|++..|+++.. .+.|..++..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1 34678999987777776644 4556666654
No 454
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.00082 Score=77.26 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=71.4
Q ss_pred HHHcCCHHHHHHHHHHhcccCCCCC-CChhhHHhhhchHHHHHHhcCCHHHHHHHHHhcCC-------------hHHHHH
Q psy12365 758 LEMTGQHAQALSFYQKSMELATPDI-QDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNS-------------SVLKNE 823 (1324)
Q Consensus 758 ~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~ 823 (1324)
+..+|+|++|+++|++++....... .........+.+|+.+|..+|+|++|+.+++++.+ ...+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4467999999999999987754311 12234566778899999999999999999887632 557889
Q ss_pred HHHHHHHccCHHHHHHHHHHhcC
Q psy12365 824 CADILQQFNKLNDAVTLYESAGN 846 (1324)
Q Consensus 824 l~~~~~~~g~~~~A~~~y~~~~~ 846 (1324)
+|.+|..+|++++|+.+|+++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999988875
No 455
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00018 Score=68.13 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=65.8
Q ss_pred HHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCH----------HHHHHHHHhc----CC-hHHHHH
Q psy12365 759 EMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF----------RLGIRLAAES----NS-SVLKNE 823 (1324)
Q Consensus 759 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~----~~-~~~~~~ 823 (1324)
.+.+.|++|++.|++++..+|. +...+..++.++...+++ ++|+..++++ |+ .++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4567899999999999999998 455666678888887765 5999988887 22 889999
Q ss_pred HHHHHHHcc-----------CHHHHHHHHHHhcC
Q psy12365 824 CADILQQFN-----------KLNDAVTLYESAGN 846 (1324)
Q Consensus 824 l~~~~~~~g-----------~~~~A~~~y~~~~~ 846 (1324)
+|..|..+| ++++|+.+|+++.+
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 999999875 78888888888764
No 456
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.27 E-value=0.026 Score=62.55 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=86.4
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe--CC----CCEEEEEEcC-CCCEEEEEEc-------------
Q psy12365 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT--LP----GLCIVMDWDS-EGDLLGIISS------------- 74 (1324)
Q Consensus 15 ~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~--~~----~~i~~i~~~~-d~~~l~~~~~------------- 74 (1324)
.+..+++.+ ++..|.++...+.|..+|.++..+..+. .. .....++++| +|...++...
T Consensus 81 ~p~gi~~~~-~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNL-QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEET-TTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcC-CCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 477899986 5445556655556888898755444433 11 3478899999 9976655321
Q ss_pred ---CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------EEEEEeCCCC---eEEEE-ecCCcEEEEEEc
Q psy12365 75 ---NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVSIYNKHGK---LIDKI-TLPGLCIVMDWD 141 (1324)
Q Consensus 75 ---~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g~---~~~~~-~~~~~i~~~~~~ 141 (1324)
.++.|..||..+++......+ ......++|+|+|..|.+ .|.+|+..+. ....+ ...+ ...++++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 136788999877765443322 234578999999986655 8999997742 11222 2345 7789999
Q ss_pred CCCCEEEE
Q psy12365 142 SEGDLLGI 149 (1324)
Q Consensus 142 ~~g~~l~~ 149 (1324)
++|++.++
T Consensus 238 ~~G~l~va 245 (322)
T 2fp8_A 238 ADGHFWVS 245 (322)
T ss_dssp TTSCEEEE
T ss_pred CCCCEEEE
Confidence 99986665
No 457
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.27 E-value=0.00025 Score=67.15 Aligned_cols=82 Identities=9% Similarity=0.082 Sum_probs=64.4
Q ss_pred HHhhHHHHHHHHHh--cCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHhcccCCCCCCChhhHHhhhchH
Q psy12365 728 DLRQWREALALATS--LGSNQTPIISCDYAQQLEMTGQH----------AQALSFYQKSMELATPDIQDPECQRKCKEGI 795 (1324)
Q Consensus 728 ~~~~~~~Al~~~~~--~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l 795 (1324)
+.+.|++|++.+++ ...++.++++..+|.++...|++ ++|+..|++++..+|+ ...++.++
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-------~~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-------KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-------cHHHHHHH
Confidence 44556666665555 23466678899999999888775 5999999999999998 55667778
Q ss_pred HHHHHhcC-----------CHHHHHHHHHhcC
Q psy12365 796 ARTSIRVG-----------DFRLGIRLAAESN 816 (1324)
Q Consensus 796 a~~~~~~g-----------~~~~A~~~~~~~~ 816 (1324)
+.+|..+| ++++|++.++++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 99998774 8999999998873
No 458
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.25 E-value=0.013 Score=61.50 Aligned_cols=147 Identities=13% Similarity=0.013 Sum_probs=94.2
Q ss_pred CcEEEEEeCCC--CEEEEEEcCCCCEEEEEE-cCCCeEEEEEcCCCeEEEEecC-CCCCceEEEEecCCCEEEE------
Q psy12365 45 GKLIDKITLPG--LCIVMDWDSEGDLLGIIS-SNSSAVNVWNTYTKKRTIVDSG-LRDPLTCLVWCKQCSMLQL------ 114 (1324)
Q Consensus 45 ~~~~~~~~~~~--~i~~i~~~~d~~~l~~~~-~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~------ 114 (1324)
.+.+.++.|+. ....+.|+||+..+++.+ .+++.|.+.|..+++......- .......++++ +..|.+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 34566777764 368999999974444433 2357999999999987766432 11122345554 445544
Q ss_pred EEEEEeCC-CCeEEEEecC-CcEEEEEEcCCCCEEEEEEcCCCcEEEeecccCC---------------CeeEEEEcCCC
Q psy12365 115 SVSIYNKH-GKLIDKITLP-GLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYT---------------LGERISWSDDG 177 (1324)
Q Consensus 115 ~i~v~d~~-g~~~~~~~~~-~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~~---------------~i~~~~~s~~~ 177 (1324)
.+.++|.. ++.+.++... +. ....++||..+++ +..++.|.++|..+.. .++.+.|. +|
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg 162 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG 162 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence 89999976 6677777654 32 2335568887777 6678999999988541 24566776 66
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q psy12365 178 QLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 178 ~~l~~~~~dg~i~~~~~~~~ 197 (1324)
...+....++.|.+.|....
T Consensus 163 ~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp EEEEEETTSSEEEEEETTTC
T ss_pred EEEEecCCCCeEEEEECCCC
Confidence 43333334677777776554
No 459
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.11 E-value=0.11 Score=59.27 Aligned_cols=150 Identities=10% Similarity=-0.113 Sum_probs=104.1
Q ss_pred CCCeeEEEEecCCCCEEEEEe-CCCcEEEEECCCc-----EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcC
Q psy12365 13 GPGDVYVCWQRRTGELLATTG-RDSSVSIYNKHGK-----LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTY 85 (1324)
Q Consensus 13 ~~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~-----~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~ 85 (1324)
...+..++|++ .+..|..+. .++.|..++.+|. ....+. ......++++++.+..|..+....+.|.+.+.+
T Consensus 111 ~~~~~~l~~d~-~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 111 LRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp CSCEEEEEEET-TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred cCcceEEeeee-ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34678999998 666665554 4678888888662 222333 335678999998777777777657899999998
Q ss_pred CCeEEEEecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEecC--CcEEEEEEcCCCCEEEEEEcCCCc
Q psy12365 86 TKKRTIVDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSA 156 (1324)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~~--~~i~~~~~~~~g~~l~~~~~~~~~ 156 (1324)
+.............+..+++.|.+..|.. .|...+.+|.....+... .....++++|++..|.++-+..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 77655555444455789999996555544 577888888766655432 467889999988877773456677
Q ss_pred EEEeecc
Q psy12365 157 VNVWTLL 163 (1324)
Q Consensus 157 i~iwd~~ 163 (1324)
|...|++
T Consensus 270 I~~~d~d 276 (400)
T 3p5b_L 270 ISSIDVN 276 (400)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 8777776
No 460
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.10 E-value=0.00049 Score=60.63 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHh-hhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRK-CKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 752 ~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
...|..+...|+|++|+..|++++..+|. +.. .+..+|.+|...|++++|++.++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-------GKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-------THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788889999999999999999999987 344 6667888888888888888877776
No 461
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.09 E-value=1.2 Score=56.17 Aligned_cols=173 Identities=9% Similarity=0.067 Sum_probs=108.5
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC---------CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEc
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---------PGLCIVMDWDSEGDLLGIISSNSSAVNVWNT 84 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~---------~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~ 84 (1324)
..|.++.-.+ +|.+- .|+.+| +..|| |.....+.+ ...|.++..+++|... +++. + -+..||.
T Consensus 43 n~v~~I~qD~-~G~lW-igT~~G-L~ryD--G~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lW-igT~-~-Gl~~yd~ 114 (795)
T 4a2l_A 43 STVFSIDQDK-RGNMW-FATYDG-VNKYD--GYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVW-IGTR-D-GLSRYDE 114 (795)
T ss_dssp SCEEEEEECT-TSCEE-EEETTE-EEEEC--SSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEE-EEES-S-CEEEEET
T ss_pred ceeEEEEEcC-CCCEE-EeecCc-CcccC--CCceEEEeCCCCCCCcccccceeEEEECCCCCEE-EEeC-C-chheeCC
Confidence 4688888887 77544 566666 55565 444555542 2458999999988655 4444 4 4789998
Q ss_pred CCCeEEEEecCCCC---CceEEEEecCCCEEEE---EEEEEeCCCCeEEEEecC---Cc-EEEEEEcCCCCEEEEEEcCC
Q psy12365 85 YTKKRTIVDSGLRD---PLTCLVWCKQCSMLQL---SVSIYNKHGKLIDKITLP---GL-CIVMDWDSEGDLLGIISSNS 154 (1324)
Q Consensus 85 ~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~---~i~v~d~~g~~~~~~~~~---~~-i~~~~~~~~g~~l~~~~~~~ 154 (1324)
.+++.......... .|.++...++|.+.+. .+..||........+... .. |.++...++|.+.+ ++.+
T Consensus 115 ~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi--gt~~ 192 (795)
T 4a2l_A 115 EKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI--GTST 192 (795)
T ss_dssp TTTEEEEECCEETTEECCCCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE--EESS
T ss_pred CCCeEEeccccccCCCceEEEEEECCCCCEEEEECCceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE--EECC
Confidence 87765443211111 2888988888876655 788898764433322211 12 78888888887555 4554
Q ss_pred CcEEEeecccC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 155 SAVNVWTLLTY-----------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 155 ~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+.+..|+..+. ..|.++..+++|. |.+++.++.+..|+....
T Consensus 193 ~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 193 DGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTK 245 (795)
T ss_dssp SCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTT
T ss_pred CCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCC
Confidence 45777775421 3467777777775 555665545888886554
No 462
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.08 E-value=0.019 Score=59.43 Aligned_cols=144 Identities=8% Similarity=-0.006 Sum_probs=90.1
Q ss_pred cEEEEEeCCCC--EEEEEEcCCCCEEEEEEcCCC--eEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------E
Q psy12365 46 KLIDKITLPGL--CIVMDWDSEGDLLGIISSNSS--AVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------S 115 (1324)
Q Consensus 46 ~~~~~~~~~~~--i~~i~~~~d~~~l~~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~ 115 (1324)
+.+.++.|+.. ...+.|+ ++.++.+++. +| .|+++|..+++......- .......-..+++..|.. .
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~-~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGL-NGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEE-TTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCC-CCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCE
Confidence 45666777644 4889998 6655555555 55 899999999988766543 333433333444555544 8
Q ss_pred EEEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccCCC---------------eeEEEEcCCCCE
Q psy12365 116 VSIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTL---------------GERISWSDDGQL 179 (1324)
Q Consensus 116 i~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~~~---------------i~~~~~s~~~~~ 179 (1324)
+.+||.. .+.+.++...+.-+.+ ++||..++. +..++.|.++|..+... ++.+.|. +|.+
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~-SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIM-SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCE--EECSSCEEE-CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECccCcEEEEEECCCCceEE--ecCCCEEEE-ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999976 7888888765532333 357777777 66678899999885422 2335555 5543
Q ss_pred EEEEeCCCcEEEEEcCC
Q psy12365 180 LAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 180 l~~~~~dg~i~~~~~~~ 196 (1324)
.+..-.++.|.+.|...
T Consensus 185 yan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 185 FANVWQTNKIVRIDPET 201 (262)
T ss_dssp EEEETTSSEEEEECTTT
T ss_pred EEEEccCCeEEEEECCC
Confidence 33333455566655544
No 463
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.08 E-value=1.2 Score=56.11 Aligned_cols=174 Identities=12% Similarity=0.092 Sum_probs=116.6
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe---CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEE
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT---LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIV 92 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~---~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~ 92 (1324)
|.++...+ +|.+.+ ++.++.|..|+..+.....+. ....|.++..+++|... +++. ++-+..||..+++....
T Consensus 175 i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~-~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQ-GDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VATE-GAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEE-TTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEEB-SSCEEEEETTTTEEEEE
T ss_pred eEEEEECC-CCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEEC-CCCeEEEeCCCCeEEEe
Confidence 77888888 786655 555545888997544333332 24568888888877654 4544 44588899887766554
Q ss_pred ecCC-------CCCceEEEEecCCCEEEE---EEEEEeCCCCeEEEEe---------cCCcEEEEEEcCCCCEEEEEEcC
Q psy12365 93 DSGL-------RDPLTCLVWCKQCSMLQL---SVSIYNKHGKLIDKIT---------LPGLCIVMDWDSEGDLLGIISSN 153 (1324)
Q Consensus 93 ~~~~-------~~~v~~~~~s~~~~~l~~---~i~v~d~~g~~~~~~~---------~~~~i~~~~~~~~g~~l~~~~~~ 153 (1324)
.... ...|.++...++|.+.+. .|.+||........+. ....|.++...++|.+.+ |+.
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi--gt~ 328 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL--GTY 328 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE--EES
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE--EEC
Confidence 3221 345889988888886655 6888887755555543 124689999999988665 566
Q ss_pred CCcEEEeeccc----------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy12365 154 SSAVNVWTLLT----------------YTLGERISWSDDGQLLAVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 154 ~~~i~iwd~~~----------------~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~ 196 (1324)
++-|..++..+ ...|.++..+++|. |.+|+.+|.+..|+...
T Consensus 329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 66677776541 13478888888875 55678777788877654
No 464
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.0012 Score=79.30 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=81.9
Q ss_pred CCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC--CHHHHHHH
Q psy12365 744 SNQTPIISCDYAQQLEMTGQ----------HAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG--DFRLGIRL 811 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 811 (1324)
.+....++...+.++...|+ +++|++.|++++..+|+ +..++..-+.++.+.| +|++|++.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-------~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------SYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcccccHHHHHHH
Confidence 45667888889999999988 99999999999999998 5566666788888899 77999999
Q ss_pred HHhcCC-----hHHHHHHHHHHHHcc-CHHHHHHHHHHhcC
Q psy12365 812 AAESNS-----SVLKNECADILQQFN-KLNDAVTLYESAGN 846 (1324)
Q Consensus 812 ~~~~~~-----~~~~~~l~~~~~~~g-~~~~A~~~y~~~~~ 846 (1324)
+.++.+ ..+|+.-+.++...| .+++|+++++++.+
T Consensus 132 ~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 888733 778999999999999 89999999888875
No 465
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.00038 Score=61.54 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=54.5
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q psy12365 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALS 769 (1324)
Q Consensus 690 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 769 (1324)
...+..+|.++...|++++|+..|.++ ++ . .+..+.++..+|.++...|++++|++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------l~----~-~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEEL-------------------VE----T-DPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------HH----H-STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HH----h-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999999999977553 22 1 34456789999999999999999999
Q ss_pred HHHHhcccCCC
Q psy12365 770 FYQKSMELATP 780 (1324)
Q Consensus 770 ~y~~al~~~~~ 780 (1324)
.|++++...+.
T Consensus 63 ~~~~al~l~~~ 73 (100)
T 3ma5_A 63 TYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99999877653
No 466
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.05 E-value=0.12 Score=56.70 Aligned_cols=147 Identities=11% Similarity=-0.076 Sum_probs=100.5
Q ss_pred eeEEEEecCCCCEEEEE-eCCCcEEEEECCCcE--EEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEE
Q psy12365 16 DVYVCWQRRTGELLATT-GRDSSVSIYNKHGKL--IDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTI 91 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~-~~~~~v~v~~~~~~~--~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~ 91 (1324)
+..+.|++ .+..|..+ ...+.|..++.+|.. ...+. .-....++++++.+..|..+....+.|.+++.++.....
T Consensus 37 ~~~ld~d~-~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 37 AAAVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cEEEEEEe-CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 56788998 65555544 456788889986642 12222 224567889998777777776657899999998765444
Q ss_pred EecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEecC--CcEEEEEEcCCCCEEEEEEcCCCcEEEeec
Q psy12365 92 VDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~~--~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
...........+++.|.+..|.. .|..++.+|.....+... .....++|+|++..|.++-+..+.|..+|.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 44444556789999997554443 678888888765555322 346789999988777763556677888877
Q ss_pred c
Q psy12365 163 L 163 (1324)
Q Consensus 163 ~ 163 (1324)
+
T Consensus 196 d 196 (318)
T 3sov_A 196 D 196 (318)
T ss_dssp T
T ss_pred C
Confidence 6
No 467
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.04 E-value=0.017 Score=62.92 Aligned_cols=134 Identities=4% Similarity=-0.051 Sum_probs=97.0
Q ss_pred HHcCCHH-HHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC----------HHHHHHHHHhc----CC-hHHHH
Q psy12365 759 EMTGQHA-QALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD----------FRLGIRLAAES----NS-SVLKN 822 (1324)
Q Consensus 759 ~~~g~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~----~~-~~~~~ 822 (1324)
...|++. +|+.++.+++..+|+ +..+++.-..++...+. ++++++++..+ |. ..+|+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3456665 899999999999998 34444444555555444 67888877665 33 88999
Q ss_pred HHHHHHHHccC--HHHHHHHHHHhcC--------HHHHHHHHHHcCC-HHHHHhhhhccC-----CHHHHHHHHHHHHHc
Q psy12365 823 ECADILQQFNK--LNDAVTLYESAGN--------YEKAATCYIQLKN-WTKIGQLLPHIK-----SATTFIQYAKAKEAM 886 (1324)
Q Consensus 823 ~l~~~~~~~g~--~~~A~~~y~~~~~--------~~~~~~~~~~~~~-~~~A~~~~~~~~-----~~~~~~~~a~~~~~~ 886 (1324)
.-+.++...|+ +++++.++.++.+ +..-.-++...|. ++++++.+.+.. +..++.+.+.++...
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999999994 9999999999875 3344455666777 688888776554 677787777777765
Q ss_pred --------------CCHHHHHHHHHHh
Q psy12365 887 --------------GSYRESVGAYERA 899 (1324)
Q Consensus 887 --------------g~~~~A~~~y~~a 899 (1324)
+.++++++++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHH
Confidence 4577777777773
No 468
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.03 E-value=0.0087 Score=65.19 Aligned_cols=148 Identities=9% Similarity=-0.026 Sum_probs=108.6
Q ss_pred CCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcC--CHHHHHHH
Q psy12365 744 SNQTPIISCDYAQQLEMTGQ----------HAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVG--DFRLGIRL 811 (1324)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 811 (1324)
.|....++...+.++...|. +++++.++++++..+|+ +..++..-+.++.+.| ++++++++
T Consensus 60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-------ny~aW~hR~wlL~~l~~~~~~~EL~~ 132 (331)
T 3dss_A 60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------SYGTWHHRCWLLSRLPEPNWARELEL 132 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHhccCcccHHHHHHH
Confidence 45556777777777777665 79999999999999998 4556666677777888 59999999
Q ss_pred HHhcCC-----hHHHHHHHHHHHHccC-HHHHHHHHHHhcC--------HHHHHHHHHHc--------------CCHHHH
Q psy12365 812 AAESNS-----SVLKNECADILQQFNK-LNDAVTLYESAGN--------YEKAATCYIQL--------------KNWTKI 863 (1324)
Q Consensus 812 ~~~~~~-----~~~~~~l~~~~~~~g~-~~~A~~~y~~~~~--------~~~~~~~~~~~--------------~~~~~A 863 (1324)
+.++.+ -.+|..-+.++...|. +++++.++.++.+ +.....++... +.++++
T Consensus 133 ~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE 212 (331)
T 3dss_A 133 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 212 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHH
Confidence 888733 7799999999999998 6999999999865 33334444443 457888
Q ss_pred HhhhhccC-----CHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q psy12365 864 GQLLPHIK-----SATTFIQYAKAKEAM-----------GSYRESVGAYER 898 (1324)
Q Consensus 864 ~~~~~~~~-----~~~~~~~~a~~~~~~-----------g~~~~A~~~y~~ 898 (1324)
++++.+.. +..++..+.-++... +.++++++++.+
T Consensus 213 le~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 213 LELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 88877654 667776555555443 346677777666
No 469
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.02 E-value=0.0028 Score=75.94 Aligned_cols=158 Identities=4% Similarity=-0.095 Sum_probs=119.9
Q ss_pred cCCH-HHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC----------HHHHHHHHHhc----CC-hHHHHHH
Q psy12365 761 TGQH-AQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD----------FRLGIRLAAES----NS-SVLKNEC 824 (1324)
Q Consensus 761 ~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~----~~-~~~~~~l 824 (1324)
.|++ ++|++.|.+++..+|+ ...+++.-+.++.+.|+ +++|++.+.++ +. ..+|+.-
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~-------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPD-------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444 6889999999999998 45666667778888887 99999988877 33 8899999
Q ss_pred HHHHHHcc--CHHHHHHHHHHhcC--------HHHHHHHHHHcC-CHHHHHhhhhccC-----CHHHHHHHHHHHHHc--
Q psy12365 825 ADILQQFN--KLNDAVTLYESAGN--------YEKAATCYIQLK-NWTKIGQLLPHIK-----SATTFIQYAKAKEAM-- 886 (1324)
Q Consensus 825 ~~~~~~~g--~~~~A~~~y~~~~~--------~~~~~~~~~~~~-~~~~A~~~~~~~~-----~~~~~~~~a~~~~~~-- 886 (1324)
+.++...| ++++|+.+++++.+ |..-..++...+ .+++++++..+.. +..++.+.+.++...
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 99999999 77999999999976 444556667788 8999999887776 677888888888774
Q ss_pred ------------CCHHHHHHHHHHhhChHHHHHHHHhccCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHH
Q psy12365 887 ------------GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGA 947 (1324)
Q Consensus 887 ------------g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~la~~~~~~g~~~~ 947 (1324)
+.+++|+++|.+|- .+ .+.+..+.+.++.++.+.+++++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai------~~----------------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAF------FT----------------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHH------HH----------------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHH------hh----------------CCCCccHHHHHHHHHhcCCCccc
Confidence 55788888887732 21 12344556667777777777554
No 470
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.02 Score=66.03 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=68.9
Q ss_pred CCeeEEEEecCC-CCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCC----eEEEEEcCCC
Q psy12365 14 PGDVYVCWQRRT-GELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSS----AVNVWNTYTK 87 (1324)
Q Consensus 14 ~~i~~~~~sp~~-g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~----~i~iw~~~~~ 87 (1324)
..+..++|+| + +..|.++...+.|+.+|.++..+..+. .......++|+++|+.|.++...++ .+.+.+..+.
T Consensus 137 ~~P~~lavdp-~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDP-KNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEET-TEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECC-CCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3567899997 4 334444544478999999876665554 4456889999999997777764222 3444554432
Q ss_pred eE-EEEecCCCCCceEEEEec-CCCEEEE-----EEEEEeCCCCe
Q psy12365 88 KR-TIVDSGLRDPLTCLVWCK-QCSMLQL-----SVSIYNKHGKL 125 (1324)
Q Consensus 88 ~~-~~~~~~~~~~v~~~~~s~-~~~~l~~-----~i~v~d~~g~~ 125 (1324)
.. ...+.. ......++++| +|.++++ .|..|+.++..
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 21 112221 23367889999 6766555 67777766543
No 471
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.98 E-value=0.012 Score=65.55 Aligned_cols=169 Identities=8% Similarity=-0.061 Sum_probs=84.1
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec
Q psy12365 16 DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS 94 (1324)
Q Consensus 16 i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~ 94 (1324)
+.++...+ +|.. .+++.++.|..+|.+|+....+. ....+.++..+++|...+.+ +.+..+| .+++......
T Consensus 139 ~~~~~~~~-~g~l-~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t----~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 139 YATPIVSE-DGTI-YVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS----DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CSCCEECT-TSCE-EEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES----SSEEEEC-TTSCEEEEEC
T ss_pred eeeeEEcC-CCEE-EEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe----CEEEEEC-CCCcEEEEEc
Confidence 33444444 5543 34555566777776665555554 22344555566666544322 4566666 3333332223
Q ss_pred CCCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEecCCc-EEEEEEcCCCCEEEEEEcCCCcEEEeecccC----
Q psy12365 95 GLRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITLPGL-CIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---- 165 (1324)
Q Consensus 95 ~~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~~~~-i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---- 165 (1324)
.....+.++...++|.+.+. .+..+|.+|+....+..... +..+...++|.+. + ++.++.+..+|....
T Consensus 212 ~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v-~t~~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 212 AGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY-F-GSYDGHLYAINPDGTEKWN 289 (330)
T ss_dssp CSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEE-E-ECTTCEEEEECTTSCEEEE
T ss_pred cCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEE-E-ecCCCCEEEECCCCcEEEE
Confidence 33344666666666655444 56666665655554443222 2234444444433 3 455555655554311
Q ss_pred -----CCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy12365 166 -----TLGERISWSDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 166 -----~~i~~~~~s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
..+.++..+++|. |.+++.+|.+.+...
T Consensus 290 ~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred EEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 2234444445553 445666666665543
No 472
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.91 E-value=0.14 Score=58.25 Aligned_cols=168 Identities=10% Similarity=-0.103 Sum_probs=112.6
Q ss_pred CEEEEEeCCCcEEEEECCCcEEEEE-eCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC----eEEEEecCCCCCce
Q psy12365 27 ELLATTGRDSSVSIYNKHGKLIDKI-TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK----KRTIVDSGLRDPLT 101 (1324)
Q Consensus 27 ~~l~~~~~~~~v~v~~~~~~~~~~~-~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~ 101 (1324)
.+|+.+. ...|+..++++.....+ .....+..++|++.+..|..+...++.|+.++..+. ....+.......+.
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3454444 46788888876544333 355678999999988888877765789999998752 23334443445678
Q ss_pred EEEEecCCCEE-EE-----EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEc--CCCcEEEeecc-cC-----
Q psy12365 102 CLVWCKQCSML-QL-----SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISS--NSSAVNVWTLL-TY----- 165 (1324)
Q Consensus 102 ~~~~s~~~~~l-~~-----~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~--~~~~i~iwd~~-~~----- 165 (1324)
.+++.+.+..| .+ .|.+.+.+|+....+.. -.....++++|.+..|.. +. ..+.|...+++ +.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~-td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-TDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE-EECSSSCCEEEEETTSCSCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE-EeCCCCCEEEEEeCCCCccEEEE
Confidence 99999854444 44 88999998876655542 235788999997766665 33 23677777766 11
Q ss_pred ----CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q psy12365 166 ----TLGERISWSDDGQLLAVTTS-GGSVKIYLSKL 196 (1324)
Q Consensus 166 ----~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~~ 196 (1324)
..+..+++++++..|+++.. .+.|..++.+.
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 45788999988888777654 46677777543
No 473
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.88 E-value=0.093 Score=57.40 Aligned_cols=169 Identities=17% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCeeEEEEecCCCCEEEEEeCC-C-cEEEEEC-CCcEEEEEeCC--CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCe
Q psy12365 14 PGDVYVCWQRRTGELLATTGRD-S-SVSIYNK-HGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKK 88 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~-~-~v~v~~~-~~~~~~~~~~~--~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~ 88 (1324)
..+..++++| +|+++++.... + .|..++. +|+........ .....++..+++. +.+....++.|+++|..++.
T Consensus 72 ~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCc
Confidence 3477899999 99976654432 2 4666674 56544333322 2345555555554 44444337899999987653
Q ss_pred EEEE-ec---------CCCCCceEEEEecCCCEEEE------EEEEEeCCC--Ce--EEEEecCCcEEEEEEcCCCCEEE
Q psy12365 89 RTIV-DS---------GLRDPLTCLVWCKQCSMLQL------SVSIYNKHG--KL--IDKITLPGLCIVMDWDSEGDLLG 148 (1324)
Q Consensus 89 ~~~~-~~---------~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g--~~--~~~~~~~~~i~~~~~~~~g~~l~ 148 (1324)
.... .. +.-.....+ +|++..|.+ .|..|+.++ +. ...+........++++++|++.+
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE
Confidence 2111 11 111234556 888876655 899999763 22 11221123345688999998766
Q ss_pred EEEcCCCcEEEeecccC-----------CCeeEEEEc---CCCCEEEEEeCCC
Q psy12365 149 IISSNSSAVNVWTLLTY-----------TLGERISWS---DDGQLLAVTTSGG 187 (1324)
Q Consensus 149 ~~~~~~~~i~iwd~~~~-----------~~i~~~~~s---~~~~~l~~~~~dg 187 (1324)
+ ....+.|.+++.... ..+++++|. ||+..|++++..+
T Consensus 228 a-~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 228 A-THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp E-CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred E-eCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 6 666778888876510 457888888 7888887776543
No 474
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.87 E-value=0.068 Score=61.58 Aligned_cols=147 Identities=13% Similarity=0.158 Sum_probs=89.8
Q ss_pred CCeeEEEEecCC--CCEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCC---Ce-EEEEEcCC
Q psy12365 14 PGDVYVCWQRRT--GELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNS---SA-VNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~--g~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d---~~-i~iw~~~~ 86 (1324)
.....++|+| + +..|.++...+.|+.++..+..+..+. ......+++|+++|+ |.++...+ .. +...+..+
T Consensus 139 ~~P~gvavd~-~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDP-NSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECT-TTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEcc-ccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4577999998 6 334444544488999998444444444 345689999999999 55554311 12 33333322
Q ss_pred CeE-EEEecCCCCCceEEEEec-CCCEEEE-----EEEEEeCC-CCeEEEEe-c--CCcEEEEEEcCCCCEEEEEEcCCC
Q psy12365 87 KKR-TIVDSGLRDPLTCLVWCK-QCSMLQL-----SVSIYNKH-GKLIDKIT-L--PGLCIVMDWDSEGDLLGIISSNSS 155 (1324)
Q Consensus 87 ~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~-----~i~v~d~~-g~~~~~~~-~--~~~i~~~~~~~~g~~l~~~~~~~~ 155 (1324)
+.. ...+. .......++++| +|.+.++ .|..+|.. |.....+. . ......++|+|+|+.|.++-...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 11111 223467789999 6766555 78889987 65523332 1 122346999999996666366678
Q ss_pred cEEEeecc
Q psy12365 156 AVNVWTLL 163 (1324)
Q Consensus 156 ~i~iwd~~ 163 (1324)
.|..++.+
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 88887754
No 475
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.80 E-value=0.16 Score=54.93 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCcEEEEEeCCCCEEEEEEcCC----CCE--EEEEE-cC--CCeEEEEEc--CCCeEEEEe
Q psy12365 25 TGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSE----GDL--LGIIS-SN--SSAVNVWNT--YTKKRTIVD 93 (1324)
Q Consensus 25 ~g~~l~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~i~~~~d----~~~--l~~~~-~~--d~~i~iw~~--~~~~~~~~~ 93 (1324)
..++++.....+-+.+||++|+.+..+.. +.++.+...|+ |+. ++.++ .. +++|.+|++ .++.+..+-
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 44667667777889999999999988754 67777777773 222 44444 43 578999977 444443331
Q ss_pred c---C--CC-CCceEEEE--ecC-CC-EEEE-----EEEEEeC--------CCCeEEEEecCCcEEEEEEcCCCCEEEEE
Q psy12365 94 S---G--LR-DPLTCLVW--CKQ-CS-MLQL-----SVSIYNK--------HGKLIDKITLPGLCIVMDWDSEGDLLGII 150 (1324)
Q Consensus 94 ~---~--~~-~~v~~~~~--s~~-~~-~l~~-----~i~v~d~--------~g~~~~~~~~~~~i~~~~~~~~g~~l~~~ 150 (1324)
. + .. ..+..+++ +|. +. ++++ .+..|++ .++.+.++...+.+..+...+....|.+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv- 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI- 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE-
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE-
Confidence 1 0 11 45677887 674 44 2333 6666654 1455677778889999999998888888
Q ss_pred EcCCCcEEEeecc--c---C------------CCeeEEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q psy12365 151 SSNSSAVNVWTLL--T---Y------------TLGERISW--SDDGQ-LLAVTT-SGGSVKIYLSK 195 (1324)
Q Consensus 151 ~~~~~~i~iwd~~--~---~------------~~i~~~~~--s~~~~-~l~~~~-~dg~i~~~~~~ 195 (1324)
+-++..|+.++.+ . . ..+..++. .++|+ +|++++ .++++.+|+..
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8888666666633 1 1 35666776 45666 666666 46789999985
No 476
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.80 E-value=0.026 Score=58.42 Aligned_cols=144 Identities=6% Similarity=-0.056 Sum_probs=89.5
Q ss_pred cEEEEEeCCC--CEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------EEE
Q psy12365 46 KLIDKITLPG--LCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SVS 117 (1324)
Q Consensus 46 ~~~~~~~~~~--~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i~ 117 (1324)
+.+.++.|+. ....+.|+. ..|..++..+|.|+++|..+++..... ........-..+++..|.. .+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence 4556666654 357888873 455555544889999999998765554 2223333223334444444 899
Q ss_pred EEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------------CCeeEEEEcCCCCEEE
Q psy12365 118 IYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------------TLGERISWSDDGQLLA 181 (1324)
Q Consensus 118 v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------------~~i~~~~~s~~~~~l~ 181 (1324)
+||.. .+.+.++...+.-+.++ +||..|+. +..++.|.++|..+. ..++.+.|. +|.+.+
T Consensus 120 V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~v-SdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEGWGLC--YWNGKLVR-SDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECSSCCCCEE--EETTEEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCCceeEEe--cCCCEEEE-ECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 99976 77788887654434444 56888877 667899999998854 234455665 554333
Q ss_pred EEeCCCcEEEEEcCCC
Q psy12365 182 VTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 182 ~~~~dg~i~~~~~~~~ 197 (1324)
....++.|.+.|....
T Consensus 196 nvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG 211 (268)
T ss_dssp EETTCSEEEEECTTTC
T ss_pred EECCCCeEEEEeCCCC
Confidence 3334556666665443
No 477
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.77 E-value=0.29 Score=52.54 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=99.3
Q ss_pred CEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCC-----C--CCceEEEE---ecCCCEEEE-----------
Q psy12365 56 LCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGL-----R--DPLTCLVW---CKQCSMLQL----------- 114 (1324)
Q Consensus 56 ~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~-----~--~~v~~~~~---s~~~~~l~~----------- 114 (1324)
...++.|++....|.+++--.++|..|+..++....+.... . ..+.++.| .|++.++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34578999977777777754899999999866444332222 1 13579999 688888774
Q ss_pred -------EEEEEeCC----CCeEEEEecC--------------CcEEEEEEcCCCCEEEEEEcCC-CcE----------E
Q psy12365 115 -------SVSIYNKH----GKLIDKITLP--------------GLCIVMDWDSEGDLLGIISSNS-SAV----------N 158 (1324)
Q Consensus 115 -------~i~v~d~~----g~~~~~~~~~--------------~~i~~~~~~~~g~~l~~~~~~~-~~i----------~ 158 (1324)
.|..||+. |+....+... +....++..++|+..++ ++.. +.| .
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSADGKTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTTSCCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCCCCEEe
Confidence 27889977 7766655521 24789999999998877 5544 444 3
Q ss_pred Eeeccc-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 159 VWTLLT-----YTLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 159 iwd~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
.|.... ....+.++++|||..|++....|.+.-+|+..+
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 343321 134678999999999998877999999998743
No 478
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.71 E-value=0.3 Score=60.54 Aligned_cols=149 Identities=10% Similarity=-0.104 Sum_probs=103.5
Q ss_pred CCeeEEEEecCCCCEEEEEe-CCCcEEEEECCCc-----EEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 14 PGDVYVCWQRRTGELLATTG-RDSSVSIYNKHGK-----LIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~-----~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+..++|++ .+..|..+. ..+.|+.++++|. ....+. .-....+|++++.+..|..+....+.|.+.+..+
T Consensus 424 ~~~~gl~~d~-~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 424 RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp SSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEeecc-cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567889988 655555444 4577888888663 222333 2355678999998888888877688999999987
Q ss_pred CeEEEEecCCCCCceEEEEecCCCEEEE-------EEEEEeCCCCeEEEEecC--CcEEEEEEcCCCCEEEEEEcCCCcE
Q psy12365 87 KKRTIVDSGLRDPLTCLVWCKQCSMLQL-------SVSIYNKHGKLIDKITLP--GLCIVMDWDSEGDLLGIISSNSSAV 157 (1324)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-------~i~v~d~~g~~~~~~~~~--~~i~~~~~~~~g~~l~~~~~~~~~i 157 (1324)
.....+.......+..|++.|.+..|.. .|...+++|.....+... .....+++++.+..|.++-...+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 7655555445556899999997555544 688888888877666533 3678899998877777734555677
Q ss_pred EEeecc
Q psy12365 158 NVWTLL 163 (1324)
Q Consensus 158 ~iwd~~ 163 (1324)
...+++
T Consensus 583 ~~~d~d 588 (791)
T 3m0c_C 583 SSIDVN 588 (791)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 777765
No 479
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.64 E-value=0.052 Score=66.81 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=99.3
Q ss_pred eEEEEecCCCCEEEEEeCCC-------------------cEEEEEC-CCcEEEEEeC---C-------CCEEEEEEcCCC
Q psy12365 17 VYVCWQRRTGELLATTGRDS-------------------SVSIYNK-HGKLIDKITL---P-------GLCIVMDWDSEG 66 (1324)
Q Consensus 17 ~~~~~sp~~g~~l~~~~~~~-------------------~v~v~~~-~~~~~~~~~~---~-------~~i~~i~~~~d~ 66 (1324)
..++++| ++..+.+++.++ .|..+|. +|+.+..++. + ....-+....||
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 4688999 888888876654 4888997 6888887772 1 112233344477
Q ss_pred ---CEEEEEEcCCCeEEEEEcCCCeEEEEecCCC----------CC-------------------------ceEEEEecC
Q psy12365 67 ---DLLGIISSNSSAVNVWNTYTKKRTIVDSGLR----------DP-------------------------LTCLVWCKQ 108 (1324)
Q Consensus 67 ---~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~----------~~-------------------------v~~~~~s~~ 108 (1324)
..+++++. +|.++++|..+++.+....... +. -..++++|+
T Consensus 325 ~~~~~l~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPK-NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred cEeeEEEEECC-CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 46666665 9999999999987754332110 00 024678888
Q ss_pred CCEEEE------------------------------------------------EEEEEeCC-CCeEEEEecCCcEEEEE
Q psy12365 109 CSMLQL------------------------------------------------SVSIYNKH-GKLIDKITLPGLCIVMD 139 (1324)
Q Consensus 109 ~~~l~~------------------------------------------------~i~v~d~~-g~~~~~~~~~~~i~~~~ 139 (1324)
+..+.+ .|..||.. |+...++.+..++....
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~ 483 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT 483 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc
Confidence 776654 25567754 67666666655555555
Q ss_pred EcCCCCEEEEEEcCCCcEEEeecccCCCee
Q psy12365 140 WDSEGDLLGIISSNSSAVNVWTLLTYTLGE 169 (1324)
Q Consensus 140 ~~~~g~~l~~~~~~~~~i~iwd~~~~~~i~ 169 (1324)
+..+|..+++ ++.++.+++||..+...++
T Consensus 484 ~~~~g~~v~~-g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 484 LTTAGNVVFQ-GTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp EEETTTEEEE-ECTTSEEEEEETTTCCEEE
T ss_pred eEeCCCEEEE-ECCCCcEEEEECCCCceee
Confidence 6667778877 8889999999988553333
No 480
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.63 E-value=0.74 Score=53.87 Aligned_cols=29 Identities=14% Similarity=-0.060 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12365 927 KCTEGAKRIADYCNKHGDFGAAIHFLILS 955 (1324)
Q Consensus 927 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~~ 955 (1324)
...+.....|.++.+.|+.++|...|.++
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555678888899999999998888765
No 481
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.62 E-value=0.035 Score=61.66 Aligned_cols=162 Identities=9% Similarity=-0.044 Sum_probs=97.1
Q ss_pred CEEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEE
Q psy12365 27 ELLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVW 105 (1324)
Q Consensus 27 ~~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 105 (1324)
..+.+++.++.|..+|..|+...... ....+.++...++|. +.+++. ++.|..+|.. ++...........+.++..
T Consensus 108 ~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSN-DNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECT-TSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcC-CCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 45556667778888887776665555 333455666677776 444544 6888888887 5443333334445666777
Q ss_pred ecCCCEEEE--EEEEEeCCCCeEEEEec-CCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccC---------CCeeEEEE
Q psy12365 106 CKQCSMLQL--SVSIYNKHGKLIDKITL-PGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTY---------TLGERISW 173 (1324)
Q Consensus 106 s~~~~~l~~--~i~v~d~~g~~~~~~~~-~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~---------~~i~~~~~ 173 (1324)
.++|.+.+. .+..||.+|+....... ...+.++...++|.+.+ ++.++.+..+|.... ..+..+..
T Consensus 185 d~~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v--~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (330)
T 3hxj_A 185 GKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV--TSLDGHLYAINPDGTEKWRFKTGKRIESSPVI 262 (330)
T ss_dssp CTTCCEEEESSSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE--EETTTEEEEECTTSCEEEEEECSSCCCSCCEE
T ss_pred cCCCEEEEEeCEEEEECCCCcEEEEEccCCcceeceEECCCCeEEE--EcCCCeEEEECCCCCEeEEeeCCCCccccceE
Confidence 777776555 67777766666555543 24466677777776544 445555655554311 22233445
Q ss_pred cCCCCEEEEEeCCCcEEEEEc
Q psy12365 174 SDDGQLLAVTTSGGSVKIYLS 194 (1324)
Q Consensus 174 s~~~~~l~~~~~dg~i~~~~~ 194 (1324)
.++| .|.+++.+|.+..++.
T Consensus 263 ~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 263 GNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CTTS-CEEEECTTCEEEEECT
T ss_pred cCCC-eEEEecCCCCEEEECC
Confidence 5455 4566777777777764
No 482
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.61 E-value=3.2 Score=53.92 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCeEEEEEecCCCCCCCccccccccccccCCCCCcceeEEecCcceEEEEEecCcEEEEEeCCceeee-eecCCCCeeEE
Q psy12365 417 NSRIQLHYLGDNQKTIPDAFVDKESKLFPESGEKYTIMTQAMSEEFLFFATSEYELKIFSLSEWKFVS-GYKHSDKIKSI 495 (1324)
Q Consensus 417 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~li~~~~~g~i~~~~l~~~~~~~-~~~~~~~i~~i 495 (1324)
.|++.++.+... +.++......++.+++++.-+.+|++|.. .+|++|++...+.+. ...+-..+..+
T Consensus 863 ~Gri~vf~v~~~-----------kL~lv~~~~v~g~v~al~~~~g~Lla~ig-~~l~vy~l~~~~~L~~~~~~~~~i~~~ 930 (1158)
T 3ei3_A 863 QGRIVVFQYSDG-----------KLQTVAEKEVKGAVYSMVEFNGKLLASIN-STVRLYEWTTEKELRTECNHYNNIMAL 930 (1158)
T ss_dssp CEEEEEEEEETT-----------EEEEEEEEEESSCEEEEEEETTEEEEEET-TEEEEEEECTTSCEEEEEEECCCSCEE
T ss_pred ceEEEEEEEECC-----------EEEEEEEEEcCCcCEEEeeeCCEEEEEcC-CEEEEEECCCCceEEEEeeccccEEEE
Confidence 477888887632 22333333345678888877777777765 489999997654222 11111113333
Q ss_pred eeCCCccEEEEEEeCCCeEEEec--CCCceeccC-CCC-CCcceEEEecCCCCCcEEEEEeCCeEEEEEEcccc
Q psy12365 496 YPDIYGICLVLIEMNNTGFLYHT--AMDYLLPIP-EFP-PATEEVLWDTVPVDRNVFVCCSKTSVVTYLFMPNY 565 (1324)
Q Consensus 496 ~~~~~~~~l~~~~~~~~l~~~~~--~~~~~~~~~-~~~-~~~~~~~w~~~~~~~~l~v~~~~~~i~v~~~~~~~ 565 (1324)
.+...|.++++.|....+.++.. ..+++..+. ++. ..+..+.+- ++..++++...+.++++.++++.
T Consensus 931 ~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~l---d~~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 931 YLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL---DDDNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp EEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEE---ETTEEEEEETTSEEEEEEECTTC
T ss_pred EEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEE---ccCcEEEEcCCCcEEEEecCCCC
Confidence 34445789999998877777654 334443321 111 122222222 45566667778899999998754
No 483
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.037 Score=63.86 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=94.3
Q ss_pred CEEEEEEcC-CCCEEEEEEcCCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE----------EEEEEeCCCC
Q psy12365 56 LCIVMDWDS-EGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL----------SVSIYNKHGK 124 (1324)
Q Consensus 56 ~i~~i~~~~-d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----------~i~v~d~~g~ 124 (1324)
....++|+| ++..|.++.. .+.|+.+|..++....+.. .......++|+++|+.|.+ .+.+++.+|.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 356899998 4667777766 4889999998877765544 4456889999999995554 2444555544
Q ss_pred eE--EEEecCCcEEEEEEcC-CCCEEEEEEcCCCcEEEeecccC-----------CCeeEEEEcCCCCEEEEEe-CCCcE
Q psy12365 125 LI--DKITLPGLCIVMDWDS-EGDLLGIISSNSSAVNVWTLLTY-----------TLGERISWSDDGQLLAVTT-SGGSV 189 (1324)
Q Consensus 125 ~~--~~~~~~~~i~~~~~~~-~g~~l~~~~~~~~~i~iwd~~~~-----------~~i~~~~~s~~~~~l~~~~-~dg~i 189 (1324)
.. ..+........++++| +|.++++ -..++.|..++.... .....++|+|+|++|+++. ..+.|
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~-d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFN-SWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEE-ETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEE-ECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 32 2332233456788999 6776666 667788888887621 2467899999999666554 55677
Q ss_pred EEEEcC
Q psy12365 190 KIYLSK 195 (1324)
Q Consensus 190 ~~~~~~ 195 (1324)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 777654
No 484
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.52 E-value=0.18 Score=51.72 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred cEEEEEeCC--CCEEEEEEcCCCCEEEEEEc-CCCeEEEEEcCCCeEEEEecCCCCCceEEEEecCCCEEEE------EE
Q psy12365 46 KLIDKITLP--GLCIVMDWDSEGDLLGIISS-NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQL------SV 116 (1324)
Q Consensus 46 ~~~~~~~~~--~~i~~i~~~~d~~~l~~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~------~i 116 (1324)
+.+.++.|+ ....++.|++ +.++.+++. ++..|+++|..+++......- ..........+.+..|.. .+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-CCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 455666766 4577999986 444444433 135899999999988766532 223333333334455544 89
Q ss_pred EEEeCC-CCeEEEEecCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecccCC---------------CeeEEEEcCCCCEE
Q psy12365 117 SIYNKH-GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYT---------------LGERISWSDDGQLL 180 (1324)
Q Consensus 117 ~v~d~~-g~~~~~~~~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~~~~---------------~i~~~~~s~~~~~l 180 (1324)
.+||.. .+.+.++...+.-+.++ +||..+.. +..++.|.++|..+.. .++.+.|. +|...
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~v-Sdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALT--SDDSHLYM-SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEE--ECSSCEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEe--eCCCEEEE-ECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 999976 77788887655444454 56777766 6678899999988542 23344444 44433
Q ss_pred EEEeCCCcEEEEEcCC
Q psy12365 181 AVTTSGGSVKIYLSKL 196 (1324)
Q Consensus 181 ~~~~~dg~i~~~~~~~ 196 (1324)
+..-.+..|.+.|...
T Consensus 164 anvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 164 ANVWLTSRIARIDPAS 179 (243)
T ss_dssp EEETTTTEEEEECTTT
T ss_pred EEECCCCeEEEEECCC
Confidence 3333455566555544
No 485
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=3 Score=52.30 Aligned_cols=177 Identities=10% Similarity=0.000 Sum_probs=116.1
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC---------CCCEEEEEEcC--CCCEEEEEEcCCCeEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL---------PGLCIVMDWDS--EGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~---------~~~i~~i~~~~--d~~~l~~~~~~d~~i~iw 82 (1324)
..|.++.-.+ +|..|-+++.++-+..||........+.+ ...|.++.-++ +|. +.+++. ++.+..|
T Consensus 66 n~I~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~-~~gl~~~ 142 (781)
T 3v9f_A 66 NELNEVYTDP-VQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTY-YRGIEYL 142 (781)
T ss_dssp SCEEEEEECS-SSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEES-SSCEEEE
T ss_pred cccceEEEcC-CCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEEC-CCCeeEE
Confidence 4588888887 88734456666458999986555555521 13588888877 665 555654 4568889
Q ss_pred EcCCCeEEEEecC-----CCCCceEEEEecCCCEEEE----EEEEEeCCCCeEEEEec---------CCcEEEEEEcCCC
Q psy12365 83 NTYTKKRTIVDSG-----LRDPLTCLVWCKQCSMLQL----SVSIYNKHGKLIDKITL---------PGLCIVMDWDSEG 144 (1324)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~----~i~v~d~~g~~~~~~~~---------~~~i~~~~~~~~g 144 (1324)
|..+++....... ....|.++...++|.+.+. .+..||........+.+ ...|.++...++|
T Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 143 DIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp ETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC
T ss_pred ECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC
Confidence 9887776544221 1245788888778776554 68888877554444421 3468888888888
Q ss_pred CEEEEEEcCCCcEEEeecccC-----------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 145 DLLGIISSNSSAVNVWTLLTY-----------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 145 ~~l~~~~~~~~~i~iwd~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
.+.+. +.+ -+.+||..+. ..|.++..+++|. |.+|+..+.|.+++....
T Consensus 223 ~lwig--t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 223 NIWIG--TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp CEEEE--ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred CEEEE--eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 86654 444 5777776411 3477788877774 666777566788886544
No 486
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.0058 Score=53.49 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=49.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHhcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Q psy12365 694 ILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPI-ISCDYAQQLEMTGQHAQALSFYQ 772 (1324)
Q Consensus 694 ~~~a~~~~~~g~~~~A~~~~~~~~~~~~a~~~~~~~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~y~ 772 (1324)
+..|..+...|++++|+..|.++ ++ .. +.... ++..+|.++...|++++|++.|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~a-------------------l~----~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEF-------------------LQ----TE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-------------------HH----HC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-------------------HH----HC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777778888887766442 11 22 34455 88999999999999999999999
Q ss_pred HhcccCCC
Q psy12365 773 KSMELATP 780 (1324)
Q Consensus 773 ~al~~~~~ 780 (1324)
+++..+|.
T Consensus 60 ~al~~~p~ 67 (99)
T 2kc7_A 60 SAIELNPD 67 (99)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 99999997
No 487
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.34 E-value=0.24 Score=51.61 Aligned_cols=141 Identities=7% Similarity=0.061 Sum_probs=91.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeEEEEec-CCCCCceEEEEecCCCEEEE-----EEEEEeCC--CC-
Q psy12365 54 PGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDS-GLRDPLTCLVWCKQCSMLQL-----SVSIYNKH--GK- 124 (1324)
Q Consensus 54 ~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~-----~i~v~d~~--g~- 124 (1324)
.+.+..++|+|++..|.+..++++.|...|.. ++...... +-......+++.+++.++++ .+.+++.. +.
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35699999999888777666558899999998 55544432 22245789999999987666 77787754 32
Q ss_pred -eEEEEe-------cCCcEEEEEEcCCCCEEEEEEcCCCcEEEeecc----c----------------CCCeeEEEEcCC
Q psy12365 125 -LIDKIT-------LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLL----T----------------YTLGERISWSDD 176 (1324)
Q Consensus 125 -~~~~~~-------~~~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~----~----------------~~~i~~~~~s~~ 176 (1324)
...... .+.....++|+|+++.|.+ +.......||..+ . ...+..++++|.
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 122222 2345689999999987777 5544444444332 0 035678899986
Q ss_pred CCEEEEEe-CCCcEEEEEcCC
Q psy12365 177 GQLLAVTT-SGGSVKIYLSKL 196 (1324)
Q Consensus 177 ~~~l~~~~-~dg~i~~~~~~~ 196 (1324)
...+.+.+ .+..+..+|.+.
T Consensus 184 tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTC
T ss_pred CCeEEEEECCCCeEEEEcCCC
Confidence 65555444 455566666544
No 488
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.33 E-value=2.2 Score=49.85 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=89.3
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCC-HHHHHHHH---Hh----c-
Q psy12365 745 NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD-FRLGIRLA---AE----S- 815 (1324)
Q Consensus 745 ~~~~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~---~~----~- 815 (1324)
+..+.++..++..+...|+.++|...|++|+.. |. ...... ..+.. ...++ +++..+.+ .. .
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-----~~~l~~--~y~~~-~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-----GMFLSL--YYGLV-MDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-----SSHHHH--HHHHH-TTCTHHHHHHHHHTC----------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-----cHHHHH--HHHhh-cchhHHHHHHHHHHHhhccchhhhh
Confidence 344788999999999999999999999999999 86 111111 11111 01111 11111110 00 0
Q ss_pred CC---hHHHHHHHHHHHHccCHHHHHHHHHHhcC-------HHHHHHHHHHc-CCHHHHHhhhhccC-----CHHHHHHH
Q psy12365 816 NS---SVLKNECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQL-KNWTKIGQLLPHIK-----SATTFIQY 879 (1324)
Q Consensus 816 ~~---~~~~~~l~~~~~~~g~~~~A~~~y~~~~~-------~~~~~~~~~~~-~~~~~A~~~~~~~~-----~~~~~~~~ 879 (1324)
.. ..+|...+..+...+..+.|..+|+++.. +-..+.+-... ++.+.|..+++... .+..+..|
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 00 46778888888888889999999999831 11112222222 35777777776543 46666667
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q psy12365 880 AKAKEAMGSYRESVGAYERA 899 (1324)
Q Consensus 880 a~~~~~~g~~~~A~~~y~~a 899 (1324)
+......|+.+.|...|.++
T Consensus 361 id~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777877777777774
No 489
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.29 E-value=0.21 Score=54.70 Aligned_cols=167 Identities=8% Similarity=-0.081 Sum_probs=108.6
Q ss_pred EEEEEeCCCcEEEEECCCcE---EEEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE-EEEecCCCCCceEE
Q psy12365 28 LLATTGRDSSVSIYNKHGKL---IDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR-TIVDSGLRDPLTCL 103 (1324)
Q Consensus 28 ~l~~~~~~~~v~v~~~~~~~---~~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~~ 103 (1324)
+|+.+ ....|+.++.++.. ...+.....+.+++|++.+..|..+...++.|..++..++.. ..+....-..+.++
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 44433 34678889986642 222222245678999997777777776578999999876632 11222222346789
Q ss_pred EEecCCCEE-EE-----EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEc--CCCcEEEeecc-cC-------
Q psy12365 104 VWCKQCSML-QL-----SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISS--NSSAVNVWTLL-TY------- 165 (1324)
Q Consensus 104 ~~s~~~~~l-~~-----~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~--~~~~i~iwd~~-~~------- 165 (1324)
++.+.+..| .+ .|.+++.+|.....+. .-.....++++|.+..|.. +. ..+.|...+++ +.
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~-td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW-TDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE-EECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE-EecCCCCEEEEEEcCCCCeEEEEEC
Confidence 999855544 44 8999999987655553 2345788999997666665 43 35677777665 11
Q ss_pred --CCeeEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q psy12365 166 --TLGERISWSDDGQLLAVTT-SGGSVKIYLSKL 196 (1324)
Q Consensus 166 --~~i~~~~~s~~~~~l~~~~-~dg~i~~~~~~~ 196 (1324)
...+.++|+|++..|+.+. ..+.|..++...
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 4567899999777777664 456677777653
No 490
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.27 E-value=0.27 Score=52.72 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=102.2
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEECCCcEEEEEeCCC---------CEEEEEE---cCCCCEEEEEEc---
Q psy12365 11 PHGPGDVYVCWQRRTGELLATTG-RDSSVSIYNKHGKLIDKITLPG---------LCIVMDW---DSEGDLLGIISS--- 74 (1324)
Q Consensus 11 ~h~~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~~~~~~~~~~---------~i~~i~~---~~d~~~l~~~~~--- 74 (1324)
...-...+++|++ +...+.+++ .+++|..|+..+.....+..++ .+.++.| +|++.++++...
T Consensus 10 ~~~~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CcccCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3445567899998 666666666 6899999999754443444222 3689999 799777775441
Q ss_pred ---------CCCeEEEEEcC---CCeEE-EEe-cC-----------CCCCceEEEEecCCCEEEE------EEEEEeCCC
Q psy12365 75 ---------NSSAVNVWNTY---TKKRT-IVD-SG-----------LRDPLTCLVWCKQCSMLQL------SVSIYNKHG 123 (1324)
Q Consensus 75 ---------~d~~i~iw~~~---~~~~~-~~~-~~-----------~~~~v~~~~~s~~~~~l~~------~i~v~d~~g 123 (1324)
++..|..+|.. +++.. ... .. -......++..++|+..++ .|..++.+|
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999988 55432 221 11 1124788999999998876 466667778
Q ss_pred CeEEEEe-cC------CcEEEEEEcCCCCEEEEEEcCCCcEEEeecc
Q psy12365 124 KLIDKIT-LP------GLCIVMDWDSEGDLLGIISSNSSAVNVWTLL 163 (1324)
Q Consensus 124 ~~~~~~~-~~------~~i~~~~~~~~g~~l~~~~~~~~~i~iwd~~ 163 (1324)
+....+. .. ...+.++++|+|+.|++ ....+.+.-+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv-~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIA-FGGPRALTAFDVS 214 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEE-ESSSSSEEEEECS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEE-EcCCCeEEEEcCC
Confidence 7544332 11 13568999999998888 5558888888876
No 491
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.22 E-value=0.059 Score=58.76 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHh---cC--------CHHHHHHHHHhc---C-ChHHHHHHHHH
Q psy12365 763 QHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR---VG--------DFRLGIRLAAES---N-SSVLKNECADI 827 (1324)
Q Consensus 763 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g--------~~~~A~~~~~~~---~-~~~~~~~l~~~ 827 (1324)
.+.+|+.+|+++++.+|+ ...++.+++.+|.. .+ ...+|++..... + +..++..++..
T Consensus 214 ~~~~A~~l~e~Al~lDP~-------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~ 286 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPE-------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVS 286 (372)
T ss_dssp HHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHH
Confidence 458999999999999998 45555556665541 11 011222221111 1 15666677777
Q ss_pred HHHccCHHHHHHHHHHhcCHHHHHHHHHHcCCHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy12365 828 LQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 900 (1324)
Q Consensus 828 ~~~~g~~~~A~~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~a~ 900 (1324)
+...|++++|...++++...+ ++...+..+|.++.-.|++++|++.|.+|-
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln----------------------~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLE----------------------MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcC----------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777788888888877765311 234455678999999999999999999954
No 492
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.20 E-value=0.15 Score=62.79 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=50.3
Q ss_pred EEEEecCCCCEEEEEeCCCc-------------------EEEEEC-CCcEEEEEeC---C-------CCEEEEEEcCCCC
Q psy12365 18 YVCWQRRTGELLATTGRDSS-------------------VSIYNK-HGKLIDKITL---P-------GLCIVMDWDSEGD 67 (1324)
Q Consensus 18 ~~~~sp~~g~~l~~~~~~~~-------------------v~v~~~-~~~~~~~~~~---~-------~~i~~i~~~~d~~ 67 (1324)
.++++| ++.++.+++.++. |..+|. +|+.+..++. + ..+.......+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 678999 8889888877753 899997 7888887762 1 1122222233564
Q ss_pred ---EEEEEEcCCCeEEEEEcCCCeEE
Q psy12365 68 ---LLGIISSNSSAVNVWNTYTKKRT 90 (1324)
Q Consensus 68 ---~l~~~~~~d~~i~iw~~~~~~~~ 90 (1324)
.++.++. +|.++++|..+++++
T Consensus 318 ~~~~v~~~~~-~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 318 PRKVLMQAPK-NGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEEECCT-TSEEEEEETTTCCEE
T ss_pred EEEEEEEECC-CCeEEEEECCCCCEe
Confidence 5666665 999999999998875
No 493
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.19 E-value=0.016 Score=51.30 Aligned_cols=68 Identities=4% Similarity=-0.017 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCCCCCChhhHHhhhchHHHHHHhcCCHHHHHHHHHhc
Q psy12365 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAES 815 (1324)
Q Consensus 748 ~~~~~~~~~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 815 (1324)
+..++.+|..+...|+|..|+..|++|+...+............+..++.++.++|++++|+.+++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 35578999999999999999999999987642200000123444556777777777777777766665
No 494
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.19 E-value=0.15 Score=62.78 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=106.5
Q ss_pred CCcEEEEEC-CCcEEEEEeCCC-C--------------------------------EEEEEEcCCCCEEEEEEcCCC---
Q psy12365 35 DSSVSIYNK-HGKLIDKITLPG-L--------------------------------CIVMDWDSEGDLLGIISSNSS--- 77 (1324)
Q Consensus 35 ~~~v~v~~~-~~~~~~~~~~~~-~--------------------------------i~~i~~~~d~~~l~~~~~~d~--- 77 (1324)
++.|+.+|. +|+.+..+.... . ...++++|++..+.++.. ++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~-~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG-NGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC-CEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC-CCccc
Confidence 688999997 889888876211 1 125788999888888765 43
Q ss_pred ----------------eEEEEEcCCCeEEEEecC--CC-------CCceEEEEecCC---CEEEE-----EEEEEeCC-C
Q psy12365 78 ----------------AVNVWNTYTKKRTIVDSG--LR-------DPLTCLVWCKQC---SMLQL-----SVSIYNKH-G 123 (1324)
Q Consensus 78 ----------------~i~iw~~~~~~~~~~~~~--~~-------~~v~~~~~s~~~---~~l~~-----~i~v~d~~-g 123 (1324)
.|..+|..+++..-.++. |. .....+....+| ..+++ .+.++|.. |
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999998876544332 21 112233334466 44555 89999965 8
Q ss_pred CeEEEEecC-----------CcE-------------------------EEEEEcCCCCEEEEEEcC--------------
Q psy12365 124 KLIDKITLP-----------GLC-------------------------IVMDWDSEGDLLGIISSN-------------- 153 (1324)
Q Consensus 124 ~~~~~~~~~-----------~~i-------------------------~~~~~~~~g~~l~~~~~~-------------- 153 (1324)
+.+..+... +.. ..++++|++.++++ .+.
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv-~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL-PAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE-EEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE-eChhcceeeeccccccc
Confidence 777665421 111 14678898887776 432
Q ss_pred -----------------------------CCcEEEeecccC---------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy12365 154 -----------------------------SSAVNVWTLLTY---------TLGERISWSDDGQLLAVTTSGGSVKIYLSK 195 (1324)
Q Consensus 154 -----------------------------~~~i~iwd~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~ 195 (1324)
.+.|..||..+. .+++...++.++.++++++.+|.+++||..
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 167888888754 223334455677788889999999999987
Q ss_pred CCce
Q psy12365 196 LPKL 199 (1324)
Q Consensus 196 ~~~~ 199 (1324)
....
T Consensus 507 tG~~ 510 (677)
T 1kb0_A 507 TGEK 510 (677)
T ss_dssp TCCE
T ss_pred CCce
Confidence 6543
No 495
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.16 E-value=3.5 Score=49.64 Aligned_cols=149 Identities=11% Similarity=-0.072 Sum_probs=103.2
Q ss_pred CCeeEEEEecCCCCEEEEEe-CCCcEEEEECCCcE--EEEEeCC-CCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCCeE
Q psy12365 14 PGDVYVCWQRRTGELLATTG-RDSSVSIYNKHGKL--IDKITLP-GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKR 89 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~-~~~~v~v~~~~~~~--~~~~~~~-~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~~~ 89 (1324)
..+..++|++ .+..|..+. .++.|..++.+|.. ...+... ....++++++.+..|..+....+.|.+.+..+...
T Consensus 40 ~~~~~ld~~~-~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 40 EDAAAVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp SCEEEEEEET-TTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEEe-CCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 4577999999 777766665 46778889987753 2233322 57889999998888888877688999999987655
Q ss_pred EEEecCCCCCceEEEEecCCCEE-EE------EEEEEeCCCCeEEEEe--cCCcEEEEEEcCCCCEEEEEEcCCCcEEEe
Q psy12365 90 TIVDSGLRDPLTCLVWCKQCSML-QL------SVSIYNKHGKLIDKIT--LPGLCIVMDWDSEGDLLGIISSNSSAVNVW 160 (1324)
Q Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l-~~------~i~v~d~~g~~~~~~~--~~~~i~~~~~~~~g~~l~~~~~~~~~i~iw 160 (1324)
..+....-.....+++.|.+..| .+ .|...+.+|.....+. .-.....+++++++..|..+-+..+.|...
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 44444445567899999975444 44 5666677777655554 223578899999877777635566778777
Q ss_pred ecc
Q psy12365 161 TLL 163 (1324)
Q Consensus 161 d~~ 163 (1324)
|.+
T Consensus 199 ~~d 201 (619)
T 3s94_A 199 NLD 201 (619)
T ss_dssp SSS
T ss_pred cCC
Confidence 776
No 496
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.16 E-value=4.4 Score=50.79 Aligned_cols=174 Identities=9% Similarity=0.056 Sum_probs=109.8
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEECCCcEEEEEeC-----------CCCEEEEEEcCCCCEEEEEEcCCCeEEEE
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITL-----------PGLCIVMDWDSEGDLLGIISSNSSAVNVW 82 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~~v~v~~~~~~~~~~~~~-----------~~~i~~i~~~~d~~~l~~~~~~d~~i~iw 82 (1324)
..|.++.-.+ +|. |-.|+.+| +..|| |.....+.+ ...|.++.-+++|..|-+++. ++-+..|
T Consensus 19 n~V~~I~qD~-~G~-lWigT~~G-L~ryD--G~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~-~~Gl~~~ 92 (781)
T 3v9f_A 19 NYVLSITQDK-QGF-LWFATEEG-LNKFD--GTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQ-RAGLNAY 92 (781)
T ss_dssp SBEEEEEECT-TSC-EEEEESSC-EEEEC--SSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEES-SSCEEEE
T ss_pred CEeEEEEECC-CCC-EEEccCCc-Ccccc--CCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeC-CCCcceE
Confidence 5688888887 775 44567777 66676 333444432 134889988888874666665 5468999
Q ss_pred EcCCCeEEEEecC-------CCCCceEEEEec--CCCEEEE----EEEEEeCCCCeEEEEec-------CCcEEEEEEcC
Q psy12365 83 NTYTKKRTIVDSG-------LRDPLTCLVWCK--QCSMLQL----SVSIYNKHGKLIDKITL-------PGLCIVMDWDS 142 (1324)
Q Consensus 83 ~~~~~~~~~~~~~-------~~~~v~~~~~s~--~~~~l~~----~i~v~d~~g~~~~~~~~-------~~~i~~~~~~~ 142 (1324)
|..+++....... ....|.++.-.+ +|.+.+. .+..||........+.. ...|.++...+
T Consensus 93 d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 172 (781)
T 3v9f_A 93 NYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE 172 (781)
T ss_dssp ETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEE
T ss_pred CCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECC
Confidence 9987776544211 123578888777 6665444 58888876555554432 24577887777
Q ss_pred CCCEEEEEEcCCCcEEEeecccC-----------------CCeeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy12365 143 EGDLLGIISSNSSAVNVWTLLTY-----------------TLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197 (1324)
Q Consensus 143 ~g~~l~~~~~~~~~i~iwd~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~~~~~~~~ 197 (1324)
+|.+.+ ++.++-+..+|..+. ..|.++..+++|.+. +++.+ .+..|+....
T Consensus 173 ~g~lwi--gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 173 DGKLYI--GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTE 240 (781)
T ss_dssp TTEEEE--EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTT
T ss_pred CCCEEE--EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCC
Confidence 777655 454544666664421 347778888887644 45655 5788886544
No 497
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.13 E-value=0.87 Score=56.37 Aligned_cols=167 Identities=10% Similarity=-0.100 Sum_probs=110.3
Q ss_pred EEEEEeCCCcEEEEECCCcEEEEEe-CCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCCC----eEEEEecCCCCCceE
Q psy12365 28 LLATTGRDSSVSIYNKHGKLIDKIT-LPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTK----KRTIVDSGLRDPLTC 102 (1324)
Q Consensus 28 ~l~~~~~~~~v~v~~~~~~~~~~~~-~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~ 102 (1324)
+|+.+ ....|+..+..+.....+. ....+.+++|++.+..|..+....+.|+.+++.+. ....+.......+..
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 44333 3456888887654443333 45678899999977777777765788999998753 223344434456789
Q ss_pred EEEecCCCEEEE------EEEEEeCCCCeEEEEec--CCcEEEEEEcCCCCEEEEEEc-CC-CcEEEeecc-cC------
Q psy12365 103 LVWCKQCSMLQL------SVSIYNKHGKLIDKITL--PGLCIVMDWDSEGDLLGIISS-NS-SAVNVWTLL-TY------ 165 (1324)
Q Consensus 103 ~~~s~~~~~l~~------~i~v~d~~g~~~~~~~~--~~~i~~~~~~~~g~~l~~~~~-~~-~~i~iwd~~-~~------ 165 (1324)
|++.+.+..|.. .|.+.+++|+....+.. -.....++++|.+..|++ +. .. +.|...+++ +.
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw-tD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-TDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE-EECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE-ecCCCCCeEEEEecCCCceEEEEe
Confidence 999988766555 89999999887666642 235788999998666666 33 22 667777766 11
Q ss_pred ---CCeeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q psy12365 166 ---TLGERISWSDDGQLLAVTTS-GGSVKIYLSKL 196 (1324)
Q Consensus 166 ---~~i~~~~~s~~~~~l~~~~~-dg~i~~~~~~~ 196 (1324)
..+..|++++.+..|+++.. .+.|..+++..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 46778899887777776643 45566666543
No 498
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.03 E-value=0.056 Score=50.71 Aligned_cols=76 Identities=14% Similarity=-0.008 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhChHHHHHHHHhccCCHHH--HHHH-------HHHhcChHHHHHHHHHHHHcCC
Q psy12365 874 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH--AVDI-------VKAKKCTEGAKRIADYCNKHGD 944 (1324)
Q Consensus 874 ~~~~~~a~~~~~~g~~~~A~~~y~~a~~~~~a~~~~~~~~~~~~~--a~~~-------~~~~~~~~~~~~la~~~~~~g~ 944 (1324)
.++..+|..+..+|+|..|...|.+|.+ +.......+.. .... .....+.+..+.+|.+|.+.++
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq------~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~ 137 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQ------QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence 3667789999999999999999999543 33221111100 0000 0011223567899999999999
Q ss_pred HHHHHHHHHHc
Q psy12365 945 FGAAIHFLILS 955 (1324)
Q Consensus 945 ~~~Ai~~~~~~ 955 (1324)
+++|+..+...
T Consensus 138 ~~~Ai~~Le~I 148 (167)
T 3ffl_A 138 DKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999877643
No 499
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.96 E-value=0.17 Score=58.26 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=83.7
Q ss_pred CCeeEEEEecCCCCEEEEEeCCC-----cEEEEECCCcEE--EEEeCCCCEEEEEEcCCCCEEEEEEcCCCeEEEEEcCC
Q psy12365 14 PGDVYVCWQRRTGELLATTGRDS-----SVSIYNKHGKLI--DKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYT 86 (1324)
Q Consensus 14 ~~i~~~~~sp~~g~~l~~~~~~~-----~v~v~~~~~~~~--~~~~~~~~i~~i~~~~d~~~l~~~~~~d~~i~iw~~~~ 86 (1324)
..+..++|+| +|+++ ++...+ .+..++..+... ..+..-.....++++|++..|.++...++.|+.++..+
T Consensus 182 ~~P~giavd~-dG~ly-Vad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 182 GQCADVNFTL-NGDMV-VVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp SCEEEEEECT-TCCEE-EEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCccEEEECC-CCCEE-EEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 4588999999 99944 444321 244444332211 12222244567889994444555544478999999886
Q ss_pred CeE-EEEec-CCCCCceEEEEecCCCEEEE------EEEEEeCCC---CeE--EEEec----------------CCcEEE
Q psy12365 87 KKR-TIVDS-GLRDPLTCLVWCKQCSMLQL------SVSIYNKHG---KLI--DKITL----------------PGLCIV 137 (1324)
Q Consensus 87 ~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~------~i~v~d~~g---~~~--~~~~~----------------~~~i~~ 137 (1324)
+.. ..... +.......++|+|+|..|.+ .|..++.++ ... ..+.. -.....
T Consensus 260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~g 339 (433)
T 4hw6_A 260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQ 339 (433)
T ss_dssp CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEE
T ss_pred CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCcc
Confidence 665 33322 22222357999999985554 788877652 111 11110 013556
Q ss_pred EEE---------cCCCCEEEEEEcCCCcEEEeec
Q psy12365 138 MDW---------DSEGDLLGIISSNSSAVNVWTL 162 (1324)
Q Consensus 138 ~~~---------~~~g~~l~~~~~~~~~i~iwd~ 162 (1324)
+++ .++|.+.++ -...+.|+.++.
T Consensus 340 iav~~n~~y~~dd~~g~lyva-D~~n~~I~~~~~ 372 (433)
T 4hw6_A 340 GIFVKNEAYAGEEDEYDFYFC-DRDSHTVRVLTP 372 (433)
T ss_dssp EEEEECGGGTTSSCCEEEEEE-ETTTTEEEEECT
T ss_pred EEEEccccccccCCCCcEEEE-ECCCCEEEEECC
Confidence 888 667766665 566677776664
No 500
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.96 E-value=0.025 Score=53.05 Aligned_cols=109 Identities=13% Similarity=-0.036 Sum_probs=65.7
Q ss_pred hHHhhhchHHHHHHhcCCHHHHHHHHHhc-------CC-------hHHHHHHHHHHHHccCHHHHHHHHHHhcCHHHHHH
Q psy12365 787 CQRKCKEGIARTSIRVGDFRLGIRLAAES-------NS-------SVLKNECADILQQFNKLNDAVTLYESAGNYEKAAT 852 (1324)
Q Consensus 787 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~-------~~~~~~l~~~~~~~g~~~~A~~~y~~~~~~~~~~~ 852 (1324)
...+++..-.+.+...|.|+.|+-++..+ ++ ..++..+|+.+...|+|..|...|+++.+..+.+.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34455555677788889999998766553 11 34778999999999999999999999876444321
Q ss_pred HHH----HcC---CHHHHHhhhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12365 853 CYI----QLK---NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 898 (1324)
Q Consensus 853 ~~~----~~~---~~~~A~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~y~~ 898 (1324)
=.- ..+ ..... .....+.++.+.+|.++.+.|++++|+..++.
T Consensus 98 k~~s~~~~~~~~ss~p~s---~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQS---QCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCccccccccCCCccc---ccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 000 00000 00111335666677777777777777776654
Done!