RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12365
(1324 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 4e-13
Identities = 86/601 (14%), Positives = 177/601 (29%), Gaps = 165/601 (27%)
Query: 702 LLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMT 761
LL + Q+++ LR + ++ L Q +++ Y +Q +
Sbjct: 71 LLSKQEEMVQKFVEE-------VLRINY-KF---LMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR---------LA 812
Q + Y + + K ++ + +R + I +A
Sbjct: 120 YNDNQVFAKYN---------VSRLQPYLKLRQAL--LELRPAKN-VLIDGVLGSGKTWVA 167
Query: 813 AESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS 872
+ V + + + + + + + N T L+ LL I
Sbjct: 168 LD----VCLSY--KVQCKMD---FKI-FWLNLKNCNSPETVLEMLQK------LLYQIDP 211
Query: 873 ATTFIQYAKAKEAMGSYR---ESVGAYER----AEDYDNVVRVDLDHLNDIRH--AVDIV 923
+ + + + S+ A R ++ Y+N + V L ++ + + A ++
Sbjct: 212 -----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNL- 264
Query: 924 KAKKC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL- 978
C T K++ D+ AA I + + K L K+L
Sbjct: 265 ---SCKILLTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEV-KSL--LLKYLD 312
Query: 979 -LEEDEP------NPVELKRLAIHFEEDKDMFRAAQYY--YHAKEYGRAMKLLL-----V 1024
+D P NP L +A E +D + + + ++ L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 1025 TARQ--------DKDSD------ENLWLGVSIVSDSHDEKLVETF--KTLLEGKLDGVKR 1068
R+ + +W V S +V +L+E K+
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KSDVMVVVNKLHKYSLVE------KQ 420
Query: 1069 NPKFLYRVLMNTGDYVAASSCALDVARDEAARGSYRNCHETL---YSTIQELKKHKLQV- 1124
+ + S L++ H ++ Y+ + L
Sbjct: 421 PKESTISIP----------SIYLELKVKLENE---YALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 1125 GNDLMAGLMIIHSYLLARYHVRNANHSLAAPLLIRVAENISFFPLHATSILTSTVIECKK 1184
D +S++ +H++N H L V + F L ST
Sbjct: 468 YLD-----QYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASG 518
Query: 1185 ANLQESALKFATLLLRPEYRSNLED---KYRKQIELIVRKAPRKDIASPEEAHVLPCPYC 1241
+ L TL Y+ + D KY + + I+ P+ E +++ Y
Sbjct: 519 SIL-------NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI------EENLICSKYT 565
Query: 1242 D 1242
D
Sbjct: 566 D 566
Score = 60.6 bits (146), Expect = 3e-09
Identities = 89/686 (12%), Positives = 178/686 (25%), Gaps = 224/686 (32%)
Query: 264 NQVSVYLRSIERKGTPWTNFIIETE-IEPSFLNMGPCHVAVGMNNRVWVYGLNPSVNNKS 322
V ++ + R + I+TE +PS M R+++ + N+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPS------------MMTRMYIEQRDRLYNDNQ 124
Query: 323 HTLVYKPQLLGDKEHLGTITSLLLNANYSSALVNSRIQLHYLGDNQKTIPDAFIKNRNYF 382
V+ + + + LL + + + + KT
Sbjct: 125 ---VFAKYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKT------------ 164
Query: 383 AHTLVYKPQLLGDKEYLGTITSLLLNANYSSALVNSRIQL------HYLGDNQKTIPDAF 436
+ ++ ++Q +L P+
Sbjct: 165 --WVA------------------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 437 VDKESKLFPESGEKYTIMTQAMSEEFLFFATSEYELKIFSLSEWKFVSGYKHSDKIKSIY 496
++ KL + +T + S L + + EL+ L Y
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKP--------------Y 243
Query: 497 PDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEFPPATEEVLWDTVPVDRNVF-VCCSKT- 554
+ CL L+ + V + + F + C K
Sbjct: 244 EN----CL-LV------------LL-------------NV-QNAKAWN--AFNLSC-KIL 269
Query: 555 ------SVVTYLFMPNYYEGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLE 608
V +L T + LL K L +P DL E
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYL------DCRPQDLPRE 321
Query: 609 THKTTMHNPKQTLDISLHKVLKLL-NWKEAWNICAVLNQSETWR--------SFAEACLQ 659
T NP +S+ + + + + W + W+ + E+ L
Sbjct: 322 VLTT---NP---RRLSI--IAESIRDGLATW---------DNWKHVNCDKLTTIIESSLN 364
Query: 660 NLEFSWAIRAYQSL----DEA-------GMVWCLESLVEEEEDTSILCGHVAALLGNHDT 708
LE + + + L A ++W + + + ++ L
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-DVIKSDVMV--VVNKLHKYSLVEKQP 421
Query: 709 AQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQAL 768
+ IP++ L L+ + L H +
Sbjct: 422 KESTI---SIPSIYLELKV-----------------------KLENEYAL-----HRSIV 450
Query: 769 SFYQKSMELATPDIQDP---------------ECQRKCKEGIARTSIRVGDFR-LGIRLA 812
Y + D+ P + + + R DFR L ++
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIR 508
Query: 813 AESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS 872
+S + + LQQ + ++ YE+ L KI + L K
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAI--LDFLPKIEENLICSKY 564
Query: 873 ATTFIQYAKAKEAMGSYRESVGAYER 898
T ++ A E + E+ +R
Sbjct: 565 -TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 56.8 bits (136), Expect = 5e-08
Identities = 104/680 (15%), Positives = 203/680 (29%), Gaps = 219/680 (32%)
Query: 446 ESGE-KYT------IMTQAMSEEFLFFATSEYELKIFSLSEWKFVSGYKHSDKIKSIY-- 496
E+GE +Y + A + F + I S E + D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRL 67
Query: 497 --------PDIYGICLVLIEMNNTGFLYHTAMDYLLPIPEFPP----ATEEVLWDTVP-- 542
++ + + N FL + + P + L++
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 543 ----VDR------------------NVFVC----CSKTSVV--------TYLFMPN--YY 566
V R NV + KT V M ++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 567 EGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLETHKTTMHNPKQTLDISLH 626
+++ SP + + L L+ +D + N K +
Sbjct: 187 ----------LNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 627 KVLKLLNWKEAWNICAVL---NQSETWRSFAEAC--------LQNLEF-SWAIRAYQSLD 674
++ +LL K N VL ++ W +F +C Q +F S A + SLD
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 675 EAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWRE 734
+L +E V +LL YL DL RE
Sbjct: 293 HH-----SMTLTPDE---------VKSLLLK-------YLDCRPQ--------DLP--RE 321
Query: 735 ALA---LATSL--GSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQR 789
L S+ S + + + D + + + + + S+ + +P R
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV----NCDKLTTIIESSLN-----VLEPAEYR 372
Query: 790 KCKEGIARTSIRVGDFRLGIRLAAESNSSVL--------KNECADILQQFNKLNDAVTLY 841
K + ++ + F + +L K++ ++ + +K +L
Sbjct: 373 KMFDRLS---V----FPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKY----SLV 417
Query: 842 ESAGNYEKAATCYI---QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 898
E K +T I L+ L +++ +YA + + Y +
Sbjct: 418 EK---QPKESTISIPSIYLE-------LKVKLEN-----EYALHRSIVDHYN-----IPK 457
Query: 899 AEDYDNVVRVDLD---------HLNDIRHA----------VDI--VKAKKCTEGAKRIAD 937
D D+++ LD HL +I H +D ++ K + A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 938 YCNKHGDFGAAIHFLILSKCYQDAF--NLSQQHKKLHEFGKFLLEEDEPNPVELK----- 990
G+ ++ L K Y+ N + + ++ FL + E N + K
Sbjct: 518 --------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLL 568
Query: 991 RLAIHFEED---KDMFRAAQ 1007
R+A+ E++ ++ + Q
Sbjct: 569 RIALMAEDEAIFEEAHKQVQ 588
Score = 39.5 bits (91), Expect = 0.009
Identities = 39/253 (15%), Positives = 79/253 (31%), Gaps = 78/253 (30%)
Query: 21 WQRRTGELLATTGRDSSV---------------SIYNKHGKLIDKITLPGLCIVMDW--D 63
W+ + L T +SS+ S++ I L ++ W
Sbjct: 347 WKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLI--WFDV 399
Query: 64 SEGDLLGIISS--NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNK 121
+ D++ +++ S V K+ TI + + + Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQP---KESTISIPSI-----------YLELKVKLENEYAL 445
Query: 122 HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYT---LGERISWSDDGQ 178
H ++D +P +DS+ DL+ Y +G + + +
Sbjct: 446 HRSIVDHYNIP-----KTFDSD-DLIPPYLDQ-----------YFYSHIGHHLKNIEHPE 488
Query: 179 LLAVTTSGGSVKIYL------SKLPKLVVANNGKIAILSSLNQVSVYLRSI-------ER 225
+ + ++L K+ A N +IL++L Q+ Y I ER
Sbjct: 489 RMTLFR-----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 226 KGTPWTNFIIETE 238
+F+ + E
Sbjct: 544 LVNAILDFLPKIE 556
Score = 39.5 bits (91), Expect = 0.009
Identities = 60/414 (14%), Positives = 121/414 (29%), Gaps = 134/414 (32%)
Query: 962 FNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKL 1021
F + +++ +L E F ++ D ++ K
Sbjct: 9 FETGEHQ---YQYKD-ILSVFEDA----------FVDNFD-------CKDVQDM---PKS 44
Query: 1022 LLVTARQDKDSDENLWLGVSIVSDSHD-EKLVETFKTLLEGKLDGVKRNPKFLYRVLMNT 1080
+L ++ D I+ + F TLL + + V++ F+ VL
Sbjct: 45 IL----SKEEIDH-------IIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRIN 90
Query: 1081 GDYVAASSCALDVARDEAARGSYRNCHETLYSTIQELKKH----------------KLQV 1124
++ S + + Y + LY+ Q K+ +L+
Sbjct: 91 YKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 1125 GNDL----MAG-------LMIIHSYLLARY--------HVRNAN--HSLAAP---LLIRV 1160
++ + G L + SY + +++N N ++ LL ++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 1161 AENISFFPLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNL---EDKYRK---- 1213
N + H+++I K + + LL Y + L +
Sbjct: 210 DPNWTSRSDHSSNI---------KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 1214 ------QIELIVRKAPRKDIASPEEA-HVLPCPYCDTMVPD----MMLHCASCA------ 1256
+I L R D S H+ + T+ PD ++L C
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 1257 ---RIIPFCIAS-G-------------KHITRNELTK----CLECNFPAIHRHL 1289
P ++ KH+ ++LT L PA +R +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 1e-08
Identities = 94/591 (15%), Positives = 169/591 (28%), Gaps = 223/591 (37%)
Query: 322 SHTLVYKPQLLGDKEHLGTI-TSLLL-NANYSSALVNSRIQLHYLGDNQKTIPDAFIKNR 379
+++ +P L H G++ LL+ A++ A QL +
Sbjct: 3 AYST--RPLTL---SH-GSLEHVLLVPTASFFIAS-----QL-----------------Q 34
Query: 380 NYFAHTLVYKPQ----LLGDKE----------YLGTITSLLLNANYSS-----ALVNSRI 420
F L P+ D E +LG ++SL+ + L +
Sbjct: 35 EQFNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 421 QLHYLGDNQKTIPD--AFVDKESKLFPESGEK----------YTIMTQAMSEEF------ 462
+ YL N D A +KL E+ Y F
Sbjct: 92 ENCYLEGN-----DIHALA---AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 463 -LFFATSEYELKIFSL------SEWKFVSGYKHSDKIKSIYPDIYGICLVLIEMNNTGFL 515
LF A E ++ ++ ++ F ++++ +Y Y LV G L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYF-------EELRDLY-QTYH-VLV-------GDL 187
Query: 516 YHTAMDYLLPIPEFPPATEEVL--------W----DTVPVDRNVFVCCSKTSVVTYLFMP 563
+ + L + E+V W P D++ + ++
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIP----ISC---- 238
Query: 564 NYYEGPKIELVGATTIQSGQSPVLLTKGLLTLVTSSNKPLDLTLETHKTTMHNPKQTLDI 623
P I ++ Q V T P +L T H+ Q L +
Sbjct: 239 -----PLIGVI-----QLAHYVVTAKLLGFT-------PGELRSYLKGATGHS--QGL-V 278
Query: 624 SLHKVLKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFS-W-AIRAYQ-----SLD-- 674
+ A + ++++W SF + + + + +R Y+ SL
Sbjct: 279 T------------A----VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 675 ------EAG------MVWC-------LESLVEEEEDTSILCGHVAALLGNHDTAQQRYLT 715
E M+ ++ V + V L N A+ ++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVS 380
Query: 716 SDIPTMALT-LRRDLRQWREALALATSLGSNQT----------------PIIS---CDY- 754
P +L L LR+ + A S G +Q+ P+ S
Sbjct: 381 G--PPQSLYGLNLTLRKAK-----APS-GLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 755 --AQQLEMTGQHAQALSFYQKSMELATP--DIQDPECQRKCKEGIARTSIR 801
A L +SF K ++ P D D R I+ +
Sbjct: 433 VPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 55.8 bits (134), Expect = 9e-08
Identities = 112/678 (16%), Positives = 198/678 (29%), Gaps = 244/678 (35%)
Query: 515 LYHTAMDYLLPIPE--FPPATEEVLWDTVPVDRNVFVCCSKTSVVTYLFMPNYYEGP--- 569
L H +++++L +P F A+ L + F +K +P EG
Sbjct: 11 LSHGSLEHVLLVPTASFFIAS--QLQEQ-------F---NKI-------LPEPTEGFAAD 51
Query: 570 -----KIELVG------ATTIQ---SGQSPVLLTKGL-------L------TLVTSSNKP 602
ELVG ++ ++ GQ +L L L L +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 603 LDLTLETHKTTMHN---PKQTLDISLHK-----VLKLLNWKEAWNICAVLN-Q--SETWR 651
D TL K + N + K + + + A + A+ Q ++ +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFGGQGNTDDY- 169
Query: 652 SFAEACLQNLEFSWAIRAYQSL-----DEAGMVWCLESLVEEEEDTSILCGH---VAALL 703
F E L++L + Y L + L L+ D + + L
Sbjct: 170 -FEE--LRDL---YQT--YHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWL 219
Query: 704 GNHDTA-QQRYLTS---DIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLE 759
N + YL S P + + L + + A LG TP + L+
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVI---QLAHY---VVTAKLLG--FTP---GELRSYLK 268
Query: 760 -MTGQHAQAL-------------SFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805
TG H+Q L SF+ R +I V F
Sbjct: 269 GATG-HSQGLVTAVAIAETDSWESFFV----------------------SVRKAITVL-F 304
Query: 806 RLGIRLAAESNSSVLKNECADILQQFNKLN-DAVTLYESAGNYEKAATCYIQLKNWTKIG 864
+G+R C + + + L +S N E + + + N T+
Sbjct: 305 FIGVR-------------C---YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-E 347
Query: 865 QLLPHIKSATTFIQYAKAKEAMGSYRESV--GAYERAEDYDNVV----RVDLDHLN-DIR 917
Q+ ++ + + K E S+ GA N+V L LN +R
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEI------SLVNGA-------KNLVVSGPPQSLYGLNLTLR 394
Query: 918 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDA-FNLSQQHKK-LHEFG 975
KA + ++ + + F FL ++ + F H L
Sbjct: 395 K----AKAPSGLDQSR--IPFSERKLKFSNR--FLPVA-----SPF-----HSHLLVPAS 436
Query: 976 KFLLEEDEPNPVEL--KRLAI---HFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDK 1030
+ ++ N V K + I + D+ R + + ++
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RV-----LSGSISERIVDCIIRLPVK- 489
Query: 1031 DSDENLWLGVSIVSDSH--D---------EKLVETFKTLLEGKLDGVKRNPKFLYRVLMN 1079
W + +H D L +G GV RV
Sbjct: 490 ------WETTTQFKATHILDFGPGGASGLGVLT---HRNKDGT--GV--------RV--- 527
Query: 1080 TGDYVAASSCALDVARDE 1097
+ A + LD+ D+
Sbjct: 528 ----IVAGT--LDINPDD 539
Score = 55.1 bits (132), Expect = 2e-07
Identities = 84/536 (15%), Positives = 157/536 (29%), Gaps = 171/536 (31%)
Query: 651 RSFAEACLQ--NLEFSWAI------RAYQ-------SLDEAGMVWCLESLVEEEEDTSI- 694
R L +LE + A Q L E E ++E T+
Sbjct: 7 RPLT---LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP-----TEGFAADDEPTTPA 58
Query: 695 -LC----GHVAALLGNHDTAQ-------------QRYL-TSDIPTMALTLRRD------- 728
L G+V++L+ Q YL +DI +A L ++
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 729 ----LRQWREAL-------------ALATSLGSNQTPIISC--------DYAQQLEMTGQ 763
++ + A AL ++G +++ DY ++L
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----- 173
Query: 764 HAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGD-FRLGIRLAAESNSSVLKN 822
+ L YQ L I+ E + RT++ F G+ + L+N
Sbjct: 174 --RDL--YQTYHVLVGDLIK--FSAETLSE-LIRTTLDAEKVFTQGLNIL-----EWLEN 221
Query: 823 ECADILQQFNKLNDA------VTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATT- 875
+ + L + + +Y T +L +T G+L ++K AT
Sbjct: 222 PSNTPDKDY--LLSIPISCPLIGVI-QLAHY--VVTA--KLLGFTP-GELRSYLKGATGH 273
Query: 876 --------FIQYAKAKEAMGSYRESVGAYE-------RAEDYDNVVRVDLDHLNDIRHAV 920
I + E+ + A R + + L D
Sbjct: 274 SQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED----- 326
Query: 921 DIVKAKKCTEGA----------------KRIADYCNKHGDFGAAIHF-LILSKCYQDAFN 963
+ + EG + + N H G + L+
Sbjct: 327 ----SLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGA---KNLV 378
Query: 964 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYY-----YHAKEYGRA 1018
+S + L+ L + P+ ++ R I F E K F ++ +H+ A
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKLKFS-NRFLPVASPFHSHLLVPA 435
Query: 1019 MKLLLVTARQDKDSDENLWLGVSI---VSDSHDEKLVETFKTLLEGKL-DGVKRNP 1070
L+ +D + + I V D+ D + + ++ D + R P
Sbjct: 436 SDLIN----KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 48.9 bits (116), Expect = 2e-05
Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 91/223 (40%)
Query: 1016 GRAMKLLLVTARQDKDSDENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRNPKFL-- 1073
G M L + + +++W + D +T+ + LD V NP L
Sbjct: 1630 GMGMDL-----YKTSKAAQDVW-------NRADNHFKDTYGFSI---LDIVINNPVNLTI 1674
Query: 1074 -------------YRVLM--NTGDYVAASSCALDVARDEAARGSYRNCHETLYST----- 1113
Y ++ D + + + ++R+ L +T
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 1114 ---------IQELKKHKLQVGNDLMAGLMIIHSYLLARYHVRNANHSLAAPLLIRVAENI 1164
++LK L + AG HS L Y A LA+ +A+ +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAG----HS--LGEY---AA---LAS-----LADVM 1777
Query: 1165 SFFPLHATSILTSTVIECKKANLQESALKFATLLLRPEYRSNL 1207
S ES ++ ++ YR
Sbjct: 1778 SI----------------------ESLVE----VVF--YRGMT 1792
Score = 47.0 bits (111), Expect = 6e-05
Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 86/292 (29%)
Query: 1034 ENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRN--P--------KFLYRVLMNTGDY 1083
E++ L V S +L E F +L +G + P KFL Y
Sbjct: 17 EHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL--------GY 67
Query: 1084 VAASSCALDVARDEAARGSYRNCHETLYSTIQELKKHKLQVGND---LMAGLM------- 1133
V++ + + G + + L + E + L+ GND L A L+
Sbjct: 68 VSSL-------VEPSKVGQFD---QVLNLCLTEFENCYLE-GNDIHALAAKLLQENDTTL 116
Query: 1134 -----IIHSYLLARYHVRNANHSLAAPLLIRVAE---------------NISFFP----L 1169
+I +Y+ AR + + L R +F L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 1170 HATSILTSTVIECKKANLQESALKFATLLLRPEYRSNLEDK--YRKQIELIVRKAPRKDI 1227
+ T L +KF+ L R+ L+ + + + + ++ +
Sbjct: 177 YQTY-----------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL--EWLENPS 223
Query: 1228 ASPEEAHVLPCPYCDTMVPDMMLHCASCARIIPFCIASGKHITRNELTKCLE 1279
+P++ ++L P P ++ A + G T EL L+
Sbjct: 224 NTPDKDYLLSIPIS---CP--LIGVIQLAHYVVTAKLLG--FTPGELRSYLK 268
Score = 44.7 bits (105), Expect = 2e-04
Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 75/236 (31%)
Query: 955 SKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKE 1014
SK QD +N + H K +G +L+ NP L IHF +K + + Y A
Sbjct: 1639 SKAAQDVWNRADNHFK-DTYGFSILDIVINNP---VNLTIHFGGEKG--KRIRENYSAMI 1692
Query: 1015 YGRAMKLLLVTARQDKDSDENLWLGVSIVSDSHD-EKLVET--------------FKTLL 1059
+ + L T + K+ +E+ + + + L T F+ L
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHS----TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 1060 EGKLDGVKRNPKF-----LYRVLMNTGDYVAASSCA--LD------------------VA 1094
G+ L G+Y A +S A + V
Sbjct: 1749 S---KGLIPADATFAGHSL-------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 1095 RDEAARGSYR----N--------CHETLYSTIQELKKHK---LQVGNDLMAGLMII 1135
RDE R +Y N E L ++ + K +++ N + +
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Score = 37.3 bits (86), Expect = 0.040
Identities = 52/328 (15%), Positives = 88/328 (26%), Gaps = 118/328 (35%)
Query: 486 YKHSDKIKSI-------YPDIYGICLVLIEMNNTGFLY-HTAMDYLLPIPE-FPPATEEV 536
YK S + + + D YG ++ I +NN L H + I E + E
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 537 LWDTVPVDRNVFVCCS-KTSVVTYLFMPNYYEGPKIELVGATTIQSGQSPVLLTKGLLTL 595
+ D +F + ++ T + K L AT Q P L
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT-------FRSEKGLL-SATQFT--Q-PALTL------ 1738
Query: 596 VTSSNKPLDLTLETHKTTMHNPKQTLDISLHKVLKLLNWKEAWNI---CAVLNQSETWRS 652
+ + LK + + A
Sbjct: 1739 -ME------------------------KAAFEDLK------SKGLIPADAT--------- 1758
Query: 653 FA-----E----ACLQN-LEFSWAIR-------AYQSL---DEAG-----MVWCLESLVE 687
FA E A L + + + Q DE G M+ V
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 688 ---EEEDTSILCGHVAALLG------NHDTAQQRYLTS-DIPTMALTLRRDLRQWREALA 737
+E + V G N++ Q+Y+ + D+ AL + +
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR--AL----------DTVT 1866
Query: 738 -LATSLGSNQTPIISCDYAQQLEMTGQH 764
+ + + II + LE H
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 35.4 bits (81), Expect = 0.15
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 28/116 (24%)
Query: 396 KEYLG-TITSLLLNANYSSALVNS-----RIQLHYLGDNQKTIPDAFVDKESKLFPESGE 449
K+ G +I +++N + + RI+ +Y +TI D + E K+F E E
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE-KIFKEINE 1712
Query: 450 KYTIMTQAMSEEFLF---------FATSEYELKIFS-LSEW------KFVSGYKHS 489
T T + L F L +G HS
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLKSKGLIPADATFAG--HS 1763
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 53.1 bits (128), Expect = 4e-07
Identities = 40/258 (15%), Positives = 74/258 (28%), Gaps = 57/258 (22%)
Query: 666 AIRAY-QSL-------DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSD 717
A + L D L +L G+V G H +
Sbjct: 145 AAICCERHLTLARQLGDRLSEGRALYNL-----------GNVYHAKGKHLGQRNPGKFG- 192
Query: 718 IPTMALTLRRDLRQWREALALATSLGSNQTPIISCD-----YAQQLEMTGQHAQALSFYQ 772
+ L R + ++E L L LG +C Y G A+ +Q
Sbjct: 193 -DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL----GDFQAAIEHHQ 247
Query: 773 KSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFN 832
+ + +A + D +R+ + + I +G F + L
Sbjct: 248 ERLRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT------------LALAV 294
Query: 833 KLND----AVTL------YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAK 881
+L + A + Y + A + + L ++G I A
Sbjct: 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD---RIGEARACWSLGN 351
Query: 882 AKEAMGSYRESVGAYERA 899
A A+G + ++ E+
Sbjct: 352 AHSAIGGHERALKYAEQH 369
Score = 44.6 bits (106), Expect = 2e-04
Identities = 21/199 (10%), Positives = 54/199 (27%), Gaps = 40/199 (20%)
Query: 726 RRDLRQWREALALATSLGSNQTPIISCDY-AQQLEMTGQHAQALSFYQKSMELATPDIQD 784
+ + + ++L G ++F+Q +++ T +D
Sbjct: 25 GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT---ED 81
Query: 785 PECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLND----AVTL 840
+ +GD+ ++ L +ND A +
Sbjct: 82 LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD------------LTLAKSMNDRLGEAKSS 129
Query: 841 ------YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFI----------QYAKAK 883
+ G +++AA C + L ++G + ++ +
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQR 186
Query: 884 EAMGSYRESVGAYERAEDY 902
+ A RA ++
Sbjct: 187 NPGKFGDDVKEALTRAVEF 205
Score = 42.7 bits (101), Expect = 7e-04
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 9/139 (6%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
G + + + + + GD R G+ + ++
Sbjct: 22 GSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA----IQ 76
Query: 822 NECADILQQFNKLNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYA 880
D+ + Y G+Y KA + L + + A +
Sbjct: 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RLGEAKSSGNLG 133
Query: 881 KAKEAMGSYRESVGAYERA 899
+ MG + E+ ER
Sbjct: 134 NTLKVMGRFDEAAICCERH 152
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 41/143 (28%)
Query: 666 AIRAY-QSL-------DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTS- 716
AI + + L D A +L G+ LG + A + Y +
Sbjct: 242 AIEHHQERLRIAREFGDRAAERRANSNL-----------GNSHIFLGQFEDAAEHYKRTL 290
Query: 717 -------DIPTMALTLR------RDLRQWREA-------LALATSLGSNQTPIISCDY-A 755
+ A + L ++ A LA+A LG +C
Sbjct: 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350
Query: 756 QQLEMTGQHAQALSFYQKSMELA 778
G H +AL + ++ ++LA
Sbjct: 351 NAHSAIGGHERALKYAEQHLQLA 373
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat,
response regulator helix-turn-HELX binding, 3-helix
bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 51.4 bits (123), Expect = 1e-06
Identities = 33/281 (11%), Positives = 82/281 (29%), Gaps = 42/281 (14%)
Query: 760 MTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSV 819
++ A+ F++K+ ++D + + ++ + + + A
Sbjct: 115 DQREYLSAIKFFKKAESKL-IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA------- 166
Query: 820 LKNECADILQQFN--KLNDAVTL------YESAGNYEKAATCYIQ-LKNWTKIGQLLPHI 870
+ +I ++ + + YE A + + + Q
Sbjct: 167 --RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQ 221
Query: 871 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV---------- 920
T K + Y +++ ++RA + + L + A
Sbjct: 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV----FEESNILPSLPQAYFLITQIHYKL 277
Query: 921 -DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL 979
I KA + K GD F L Y + +L
Sbjct: 278 GKIDKAHEYHSKGMAY---SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334
Query: 980 EEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMK 1020
D + +A ++ E K+ +A+ Y+ ++ + ++
Sbjct: 335 YADLED--FAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373
Score = 37.1 bits (86), Expect = 0.031
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 44/189 (23%)
Query: 697 GHVAALLGNHDTAQQRYLTS--------DIPTMALTLR------RDLRQWREAL-----A 737
L ++ A + + M TL Q+ +A+ A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 738 LATSLGSNQTPIISCDY---AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEG 794
+A SN P + Y Q G+ +A ++ K M + D +
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ-KAGDVIYLSE---- 305
Query: 795 IARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTL-------YESAGNY 847
F L D L+ D Y N+
Sbjct: 306 ----------FEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF 355
Query: 848 EKAATCYIQ 856
+KA+ +++
Sbjct: 356 QKASAYFLK 364
Score = 31.3 bits (71), Expect = 2.4
Identities = 33/278 (11%), Positives = 75/278 (26%), Gaps = 58/278 (20%)
Query: 841 YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
Y A + + + I+ A F + +++ M S+ +A
Sbjct: 113 ELDQREYLSAIKFFKKAESKLIFVKD---RIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169
Query: 900 -----EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL 954
E +R+ H A + AI
Sbjct: 170 YEIYKEHEAYNIRLLQCHSL--------------------FATNFLDLKQYEDAI----- 204
Query: 955 SKCYQDAFNLSQQHKK-------LHEFGKFLLEEDEPNPVE---LKRLAIHFEEDKDMFR 1004
+Q A+++++ K+ L+ G + + + +A+ E +
Sbjct: 205 -SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263
Query: 1005 AAQY------YYHAKEYGRAMKLL-----LVTARQDKDSDENLWLGVSIVSDSHDEKLVE 1053
Y +Y + +A + D S+ DE+ ++
Sbjct: 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323
Query: 1054 TFKTLLE--GKLDGVKRNPKFLYRVLMNTGDYVAASSC 1089
F LE ++ + + ++ AS+
Sbjct: 324 GFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAY 361
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 49.1 bits (117), Expect = 5e-06
Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 48/239 (20%)
Query: 827 ILQQFNKLNDAVTLYESAGN--------------YEKAATCYIQLKNWTKIGQLLPHIKS 872
++ + A + Y A Y + A + ++ +
Sbjct: 25 FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA-- 82
Query: 873 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 932
+ EA+ ++ Y D LD + +D+ KA + A
Sbjct: 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA-LDRAGKLMEPLDLSKAVHLYQQA 141
Query: 933 -----------------KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFG 975
+ + + F A Q ++ ++ +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAA------ASLQKEKSMYKEMENYPTCY 195
Query: 976 KFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQ---YYYHAKEYGRAMKLLLVTARQDKD 1031
K + V ++ + + R + + +++ LL QD++
Sbjct: 196 KKCI-----AQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEE 249
Score = 45.3 bits (107), Expect = 7e-05
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 15/194 (7%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAE 814
A + Q QA Y + E + + K E + ++
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI-- 99
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSA 873
+SV+ E L+ A L E + KA Y Q + + ++A
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAA 155
Query: 874 TTFIQYAKAKEAMGSYRESVGAYERA-------EDYDNVVRVDLDHLNDIRHAVDIVKAK 926
+ ++ + E+ + ++ E+Y + + + H D V A+
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 927 KCTEGAKRIADYCN 940
KC + I +
Sbjct: 216 KCVRESYSIPGFSG 229
Score = 37.2 bits (86), Expect = 0.033
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 3/123 (2%)
Query: 732 WREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKC 791
+A + G+ T ++ D A +L ++A+ YQ++ + + + +
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFE-NEERLRQAAEL 157
Query: 792 KEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAA 851
+R +R F + S + E + + K V + +Y A
Sbjct: 158 IGKASRLLVRQQKFDEAAASLQKEKS--MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 852 TCY 854
C
Sbjct: 216 KCV 218
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 45.7 bits (109), Expect = 3e-05
Identities = 20/181 (11%), Positives = 43/181 (23%), Gaps = 23/181 (12%)
Query: 729 LRQWREALALATSLGSNQTPIISCDY-AQQLEMTGQHAQALSFYQKSMELATPDIQDPEC 787
L T + + +A + +Q + A D
Sbjct: 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-KSGDHTA 64
Query: 788 QRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQF--NKLNDAVTL----- 840
+ + + G++ R E ++L + L +
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCF---------LEERELLASLPEDPLAASANAYEVAT 115
Query: 841 -YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 898
G+ A Y + L + + A F + + E+ + R
Sbjct: 116 VALHFGDLAGARQEYEKSLVYAQQADD---QVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172
Query: 899 A 899
A
Sbjct: 173 A 173
Score = 45.0 bits (107), Expect = 4e-05
Identities = 29/209 (13%), Positives = 55/209 (26%), Gaps = 49/209 (23%)
Query: 666 AIRAYQSL-DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALT 724
+A L A L G+V A + D A+ +
Sbjct: 12 ERQAQALLAHPATASGARFML-----------GYVYAFMDRFDEARASFQA------LQQ 54
Query: 725 LRRDLR-QWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ 783
+ E AL +G G A + + EL +
Sbjct: 55 QAQKSGDHTAEHRALH-QVGMV--------ERMA----GNWDAARRCFLEERELLASLPE 101
Query: 784 DPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQF-NKLNDAVTL-- 840
DP +A ++ GD + +S L QQ +++ A
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKS----LV-----YAQQADDQVAIACAFRG 152
Query: 841 ----YESAGNYEKAATCYIQ-LKNWTKIG 864
+ N +A +++ + ++
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELE 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 44.8 bits (107), Expect = 3e-05
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 21/146 (14%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
G A+ +++ + +A + D +R + I +G+F ++ L
Sbjct: 23 GNFRDAVIAHEQRLLIAK-EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT----LL 77
Query: 822 NECADILQQF-NKLNDAVTL------YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSA 873
+ +Q ++ +A + Y +YEKA +++ L ++ I
Sbjct: 78 -----LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD---RIGEG 129
Query: 874 TTFIQYAKAKEAMGSYRESVGAYERA 899
A A+G++ +++ E+
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKH 155
Score = 34.4 bits (80), Expect = 0.093
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 49/147 (33%)
Query: 666 AIRAY-QSL-------DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTS- 716
A+ A+ Q L D+A +L G+ LG +TA + Y +
Sbjct: 28 AVIAHEQRLLIAKEFGDKAAERIAYSNL-----------GNAYIFLGEFETASEYYKKTL 76
Query: 717 -------DIPTMALTLR------RDLRQWREA-------LALATSLGSNQTPIISCD--- 753
D A + L+ + +A LA+A L +C
Sbjct: 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136
Query: 754 --YAQQLEMTGQHAQALSFYQKSMELA 778
Y G H QA+ F +K +E++
Sbjct: 137 NAYTAL----GNHDQAMHFAEKHLEIS 159
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 47.3 bits (112), Expect = 4e-05
Identities = 71/438 (16%), Positives = 137/438 (31%), Gaps = 72/438 (16%)
Query: 630 KLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEE 689
+ N A+ N+ W A+A LQ AI +Y D+ +V+
Sbjct: 1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---SSYMEVVQAA 1144
Query: 690 EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPI 749
+ V L A++ Y+ +++ AL L + E + G N I
Sbjct: 1145 NTSGNWEELVKYLQMARKKARESYVETELI-FALAKTNRLAELEEFIN-----GPNNAHI 1198
Query: 750 ISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGI 809
+ + A Y +A T + +G+++ +
Sbjct: 1199 QQV--GDRCYDEKMYDAAKLLYNNVSNFGR---------------LASTLVHLGEYQAAV 1241
Query: 810 RLAAESNSS----------------VLKNECA-DILQQFNKLNDAVTLYESAGNYEKAAT 852
A ++NS+ L C I+ ++L + + Y+ G +E+ T
Sbjct: 1242 DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301
Query: 853 CYIQLKNWT-----------------KIGQLLPHIKSATTFIQYAK---AKEAMGSYRES 892
K ++ H++ + + K A E + E
Sbjct: 1302 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 1361
Query: 893 VGAYERAEDYDNVVRVDLDHLND-IRHAV---DIVKAKKCTEGAKRIADYCNKHGDFGAA 948
V Y++ E+YDN + ++H D + I K + I Y
Sbjct: 1362 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLND 1421
Query: 949 IHFLILSKC-YQDAFNLSQQHKKLHEFGKFLLEEDEPNPVE----LKRLAIHFEEDKDMF 1003
+ ++ + + A N + K+L +L N L L I E+ + +
Sbjct: 1422 LLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 1481
Query: 1004 RAAQYYYHAKEYGRAMKL 1021
+ Y + A +L
Sbjct: 1482 TSIDAYDNFDNISLAQRL 1499
Score = 34.2 bits (78), Expect = 0.35
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 880 AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC 939
A + + E+ + + + + V+V ++H+ ++ A + + ++A
Sbjct: 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQ 1115
Query: 940 NKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLHEFGKFLLEEDE 983
+ G AI I + Y + + E K+L +
Sbjct: 1116 LQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 46.1 bits (110), Expect = 4e-05
Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 31/217 (14%)
Query: 697 GHVAALLGNHDTAQQRYLTSDIPTMAL-TLRRDLRQWREALALATSLGSNQTPIISCD-- 753
G+V G T + P L+ + + E L+L T+LG +
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 754 ---YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR 810
+ G A+ +++ + +A + D +R+ + I +G+F
Sbjct: 190 GNTHYLL----GNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 811 LAAESNSSVLKNECADILQQF-NKLNDAVTL------YESAGNYEKAATCYIQ-LKNWTK 862
+ + +Q ++ +A + Y +YEKA +++ L +
Sbjct: 245 YY---------KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295
Query: 863 IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ I A A+G++ +++ E+
Sbjct: 296 LKD---RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329
Score = 43.8 bits (104), Expect = 3e-04
Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 35/219 (15%)
Query: 697 GHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWR-EALAL------ATSLGSNQTPI 749
G+ +LGN D A L + R+L EA AL + G +
Sbjct: 90 GNTLKVLGNFDEAIVCCQR------HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143
Query: 750 ISCDYAQQL-EMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLG 808
D + ++ A+ Y++++ L T + D Q + + T +G+FR
Sbjct: 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVT-ALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Query: 809 IRLAAESNSSVLKNECADILQQF-NKLNDAVTL------YESAGNYEKAATCYIQ-LKNW 860
+ + L I ++F +K + Y G +E A+ Y + L
Sbjct: 203 VIAHEQR----LL-----IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253
Query: 861 TKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
++ A + + Y +++ + +
Sbjct: 254 RQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Score = 35.3 bits (82), Expect = 0.12
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 43/166 (25%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
G +SF++ ++++ T +D + + + D+ +
Sbjct: 19 GDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------ 69
Query: 822 NECADILQQFNKLND----AVTL------YESAGNYEKAATCYIQ-------LKNWTKIG 864
L + D A + GN+++A C + L +
Sbjct: 70 ------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Query: 865 QLLPHI-----------KSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ L ++ ++ + + +V YE
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Score = 34.1 bits (79), Expect = 0.24
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 37/121 (30%)
Query: 666 AIRAY-QSL-------DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSD 717
A Y ++L D A SL G+ LL +++ A +L
Sbjct: 242 ASEYYKKTLLLARQLKDRAVEAQSCYSL-----------GNTYTLLQDYEKAIDYHL--- 287
Query: 718 IPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMEL 777
L + ++L+ + S + Y G H QA+ F +K +E+
Sbjct: 288 ---KHLAIAQELKDRIG---EGRACWS-----LGNAYTAL----GNHDQAMHFAEKHLEI 332
Query: 778 A 778
+
Sbjct: 333 S 333
Score = 29.1 bits (66), Expect = 9.9
Identities = 6/67 (8%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRES 892
L +G+ + + ++ T+ + + Q A + Y ++
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTED-----LKTLSAIYSQLGNAYFYLHDYAKA 62
Query: 893 VGAYERA 899
+ +
Sbjct: 63 LEYHHHD 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 45.8 bits (109), Expect = 8e-05
Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 37/220 (16%)
Query: 697 GHVAALLGNHDTAQQRYLTSDIPTMAL-TLRRDLRQWREALALATSLGSNQTPIISCD-- 753
G+V G + P L+ + + E L+L T+LG +
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193
Query: 754 ---YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR 810
+ G A+ +++ + +A + D +R+ + I +G+F
Sbjct: 194 GNTHYLL----GNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 811 LAAESNSSVLKNECADILQQFNKLND----AVTL------YESAGNYEKAATCYIQ-LKN 859
++ L +L D A + Y +YEKA +++ L
Sbjct: 249 YYKKT------------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
Query: 860 WTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
++ I A A+G++ +++ E+
Sbjct: 297 AQELND---RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333
Score = 38.4 bits (90), Expect = 0.015
Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 40/193 (20%)
Query: 697 GHVAALLGNHDTAQQRYLTS--------DIPTMALTLR------RDLRQWREA------- 735
G+ LLGN A + D L ++ A
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253
Query: 736 LALATSLGSNQTPIISCD-----YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRK 790
L LA L SC Y + +A+ ++ K + +A ++ D + +
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLL----QDYEKAIDYHLKHLAIAQ-ELNDRIGEGR 308
Query: 791 CKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLND-AVTL------YES 843
+ +G+ + A + + E D + + + Y +
Sbjct: 309 ACWSLGNAYTALGNHDQAMHFAEKHLE--ISREVGDKSGELTARLNLSDLQMVLGLSYST 366
Query: 844 AGNYEKAATCYIQ 856
+ T
Sbjct: 367 NNSIMSENTEIDS 379
Score = 36.9 bits (86), Expect = 0.039
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 43/166 (25%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
G +SF++ ++++ T +D + + + D+ +
Sbjct: 23 GDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------ 73
Query: 822 NECADILQQFNKLND----AVTL------YESAGNYEKAATCYIQ-------LKNWTKIG 864
L + D A + GN+++A C + L +
Sbjct: 74 ------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127
Query: 865 QLLPHI-----------KSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ L ++ +E + + +V YE
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173
Score = 36.5 bits (85), Expect = 0.061
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 50/167 (29%)
Query: 666 AIRAY-QSL-------DEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTS- 716
A+ A+ Q L D+A +L G+ LG +TA + Y +
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNL-----------GNAYIFLGEFETASEYYKKTL 254
Query: 717 -------DIPTMALTLR------RDLRQWREA-------LALATSLGSNQTPIISCD--- 753
D A + L+ + +A LA+A L +C
Sbjct: 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314
Query: 754 --YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIART 798
Y G H QA+ F +K +E++ ++ D + + ++
Sbjct: 315 NAYTAL----GNHDQAMHFAEKHLEISR-EVGDKSGELTARLNLSDL 356
Score = 29.6 bits (67), Expect = 7.9
Identities = 6/67 (8%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRES 892
L +G+ + + ++ T+ + + Q A + Y ++
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTED-----LKTLSAIYSQLGNAYFYLHDYAKA 66
Query: 893 VGAYERA 899
+ +
Sbjct: 67 LEYHHHD 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat,
protein transport; 2.90A {Saccharomyces cerevisiae} SCOP:
a.118.8.1
Length = 292
Score = 45.0 bits (106), Expect = 9e-05
Identities = 33/269 (12%), Positives = 74/269 (27%), Gaps = 43/269 (15%)
Query: 832 NKLNDAVTLYESAGN--------------YEKAATCYIQLKNWTKIGQLLPHIKSATTFI 877
K +A L A + KAA + N + G F
Sbjct: 31 YKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA--YKCFK 88
Query: 878 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI--RHAVDIVKAKKCTEGAKRI 935
+ A+ S ++ + + + ++ D+ K + +
Sbjct: 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGA----NFKFELGEILENDLHDYAKAIDCYELA 144
Query: 936 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIH 995
++ + + +KC+ +L + E + + +
Sbjct: 145 GEWYAQDQSVALS------NKCFIKCADLKALDGQYIEASDIYSKLIK---SSMGNRLSQ 195
Query: 996 FEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQD---KDSDENLWLGVSIVSDSHDEKLV 1052
+ + A + A + L +D DS E+ +L + D+ +E
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL--KSLIDAVNEGDS 253
Query: 1053 ETFKTLLE-----GKLDGVKRNPKFLYRV 1076
E + +LD K L ++
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKI--TILNKI 280
Score = 42.7 bits (100), Expect = 5e-04
Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 36/222 (16%)
Query: 822 NECADILQQFNKLNDAVTLYESAGN-------YEKAATCYIQLKN-WTKIGQLLPHIKSA 873
+ AD ++ ++A Y A A +T GQ + A
Sbjct: 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGA 117
Query: 874 TTFIQYAKAKEA-MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 932
+ + E + Y +++ YE A + + K
Sbjct: 118 NFKFELGEILENDLHDYAKAIDCYELA----------GEWYAQDQSVALSNKCF------ 161
Query: 933 KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRL 992
+ AD G + A LSQ K + K L + + V R
Sbjct: 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221
Query: 993 AIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDE 1034
+ + F ++E L+ A + DS++
Sbjct: 222 LQEGQSEDPNF------ADSRESNFLKSLI--DAVNEGDSEQ 255
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 44.4 bits (105), Expect = 2e-04
Identities = 23/245 (9%), Positives = 61/245 (24%), Gaps = 53/245 (21%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
Q ++ +++++ + IA + + +
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA------ 208
Query: 822 NECADILQQFNKLND----AVTL------YESAGNYEKAATCYIQLKNWTKIGQLLPHIK 871
L+ + + A++L Y+ +G+ + A + + K+ +
Sbjct: 209 ------LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF---QKAAKVSREKVPDL 259
Query: 872 SATTFIQYAKAKEAMGSYRESVGAYERA---------EDYDNVVRV------DLDHLNDI 916
+ G +++ E + Y + + I
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 917 RHAVDIVKAKK----CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK-- 970
+ + K A+ A F A F Y+ + K
Sbjct: 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF------YRKVLKAQEDILKGE 373
Query: 971 -LHEF 974
L+ +
Sbjct: 374 CLYAY 378
Score = 39.8 bits (93), Expect = 0.006
Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 734 EALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCK- 792
+A ++ + P + + L GQ +A F ++ ++ T +
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT-ARSHKFYKELFLF 305
Query: 793 -EGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAA 851
+ + + ++ + + N L A ++ES+ ++E+AA
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKN---LHAYIEAC------ARSAAAVFESSCHFEQAA 356
Query: 852 TCYIQ 856
Y +
Sbjct: 357 AFYRK 361
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 43.6 bits (102), Expect = 3e-04
Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 53/281 (18%)
Query: 25 TGELLATTGRDSSVSIYN-KHGKLIDKITLP-----GLCIVMDWDSEGDLLGIISSNSSA 78
+ D ++ K K I IT P G + + L ++ +
Sbjct: 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRL-LLLYPGNQ 105
Query: 79 VNVWNTYTKKRT-IVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLCIV 137
+ + ++ T K ++ + + + + + +
Sbjct: 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF------------ 153
Query: 138 MDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKIYLSKLP 197
E D I+ S S V + D LLA+ + G + +Y P
Sbjct: 154 --QSYEDDSQYIVHSAKSDVEYSS---------GVLHKDSLLLALYSPDGILDVYNLSSP 202
Query: 198 KLVV----------------ANNGKIAILSSLNQVSVY-LRSIERKGTPWTNFIIETEIE 240
A+NG ++ V + LR T I E +
Sbjct: 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262
Query: 241 PSWREYHGLVVANNGKIAILSSLNQVSVYLRSIERKGTPWT 281
+ ++GK I S S+ + ++K WT
Sbjct: 263 TV-----TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 41.9 bits (99), Expect = 0.001
Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 58/216 (26%)
Query: 694 ILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCD 753
I GH A+ HD A Y T A L + L + +G
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFT------AAQLMKGC-----HLPM-LYIG---------- 166
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPEC----------QRKCKEGIARTSIRVG 803
+ +T A F+ +++ +A P+ DP + K
Sbjct: 167 --LEYGLTNNSKLAERFFSQALSIA-PE--DPFVMHEVGVVAFQNGEWKTAEK------- 214
Query: 804 DFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKI 863
F + + V ++ +L N + Y +A + Q
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLL--NNL---GHVCRKL-KKYAEALDYHRQAL----- 263
Query: 864 GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
L+P ++A+T+ MG++ +V + A
Sbjct: 264 -VLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTA 296
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 39.7 bits (92), Expect = 0.002
Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 4/158 (2%)
Query: 629 LKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEE 688
L+ N A + LN S TW + L S A YQ+ + L + +
Sbjct: 16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD 75
Query: 689 EEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTP 748
S + ++A + + ++ ++ + A A+A + G
Sbjct: 76 VNKLSKMQ-NIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAA 134
Query: 749 IISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPE 786
+ +Q E+ Q S + P I P
Sbjct: 135 SA---FLEQAEVDEQDVTLPDQMDASNFVQRPVISKPL 169
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 40.8 bits (95), Expect = 0.002
Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 42/221 (19%)
Query: 8 LEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPG--LCIVMDWDS 64
+ V RT + TG V I++ + + +I + + + +
Sbjct: 53 IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF 112
Query: 65 EGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCL------------VWCKQCSML 112
I+ S ++V+ + I D + + + L
Sbjct: 113 ------IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL 166
Query: 113 QLSVSIYNKHGKLIDKITLPGLCIV---------MDWDSEGDLLGIISSNSSAVNVWTLL 163
Q S S + + K L ++ + + + D++ S + + + V+
Sbjct: 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226
Query: 164 TYTL------GER------ISWSDDGQLLAVTTSGGSVKIY 192
L G + WS DG LAV + ++ ++
Sbjct: 227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 39.9 bits (93), Expect = 0.005
Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 48/293 (16%)
Query: 3 KLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLC-IVM 60
+L + G V EL + + ++V +++ K + L G ++
Sbjct: 158 RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217
Query: 61 DWDSEGDLLGIISSNSSAVNVWNTYTKKRT-IVDSGLR------DP-----LTCLVWCKQ 108
+D DL+ + S ++V + TK D
Sbjct: 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASN 277
Query: 109 CSMLQLSVSIYN-KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTL 167
+ IY+ KLID I PG + + + + + S + V+ L +
Sbjct: 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337
Query: 168 GERIS---------WSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSV 218
+ I S DG+ L V+ G + + ++ GK+ ++
Sbjct: 338 QKSIPVFDKPNTIALSPDGKYLYVSCRGPN---HPTEGYLKKGLVLGKVYVID------- 387
Query: 219 YLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAILSSL--NQVSVY 269
+ K E +P GL V+ + + ++S +Q+ VY
Sbjct: 388 -TTTDTVKEF------WEAGNQP-----TGLDVSPDNRYLVISDFLDHQIRVY 428
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 39.9 bits (92), Expect = 0.005
Identities = 16/187 (8%), Positives = 45/187 (24%), Gaps = 31/187 (16%)
Query: 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPG-----LCIVMDWDSEG 66
+ + + + ++ V+ ++ + L + +
Sbjct: 263 SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322
Query: 67 DLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLI 126
D + + ++N +D T + L +Y
Sbjct: 323 DTVVSTVAVDGYFYIFN------------PKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370
Query: 127 DKITLPGLCIVMDWD-SEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTS 185
I G + + + S + + I S ++ ++
Sbjct: 371 --IYSDGASSLRAVPSRAAFAVHPLVSRETTIT-----------AIGVSRLHPMVLAGSA 417
Query: 186 GGSVKIY 192
GS+ I
Sbjct: 418 DGSLIIT 424
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 39.1 bits (90), Expect = 0.013
Identities = 19/199 (9%), Positives = 59/199 (29%), Gaps = 23/199 (11%)
Query: 6 FTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIVMDWDS 64
++ + + G L +V + + K++ + +PG +D D+
Sbjct: 51 VVIKLEDRSAIKEMRF--VKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA 108
Query: 65 EGDLLGIISSNSSAVNVWNTYT-----------KKRTIVDSGLRDPLTCLVWCKQCSMLQ 113
D + +I + ++ V++ +K + + P+ + W + +
Sbjct: 109 SLDWM-LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-DIGT 166
Query: 114 LSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISW 173
+ +S Y + + G S ++ ++ +
Sbjct: 167 VLIS-YEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ------SLY 219
Query: 174 SDDGQLLAVTTSGGSVKIY 192
+ + S+ +
Sbjct: 220 HPNSLHIITIHEDNSLVFW 238
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 38.0 bits (88), Expect = 0.018
Identities = 45/356 (12%), Positives = 100/356 (28%), Gaps = 47/356 (13%)
Query: 686 VEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSN 745
+++ + ++ AL Q + P A L + AL
Sbjct: 4 IKDIREDTMH-AEFNALRA------QVAINDGNPDEAERL------AKLALEELPPGWFY 50
Query: 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDF 805
+ + + L G+ ++L+ Q++ ++A + G
Sbjct: 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFAQGFL 109
Query: 806 RLGIRLAAESNSSVLKNECADI-LQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIG 864
+ ++ + + + + +F A L+ ++A ++
Sbjct: 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSG---IEVL 165
Query: 865 QLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK 924
+ + A G + R E+ + D +++
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR---- 221
Query: 925 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP 984
Y GD AA ++L + + A N Q + + + E
Sbjct: 222 -----------VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-QWRNIARAQILLGEF 269
Query: 985 NPVE--LKRLAIHFEEDKDMFRA-------AQYYYHAKEYGRAMKLL---LVTARQ 1028
P E L+ L + + M Q Y+ A A ++L L A +
Sbjct: 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 37.0 bits (85), Expect = 0.022
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 1217 LIVRKAPRKDIAS--PEEAHVLPCPYCDTMVPDMM-------LHCASCARII 1259
++ R++ K P VL CP C P ++ + CA C ++
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52
Score = 30.0 bits (67), Expect = 3.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 1272 NELTKCLECNFPAIHRHLVLIVDQE-G--FCPLC 1302
N + C EC ++ G C LC
Sbjct: 19 NIVLTCPECK----VYPPKIVERFSEGDVVCALC 48
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 37.9 bits (88), Expect = 0.023
Identities = 34/216 (15%), Positives = 49/216 (22%), Gaps = 60/216 (27%)
Query: 694 ILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCD 753
I H A+ G HD A Y T A L + L LG
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTT------AARLFQGT-----HLPY-LFLG---------- 448
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPEC----------QRKCKEGIARTSIRVG 803
Q G A + Q S L DP + + I
Sbjct: 449 --MQHMQLGNILLANEYLQSSYALF-QY--DPLLLNELGVVAFNKSDMQTAIN------- 496
Query: 804 DFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKI 863
F+ + L ++ S+ N + Y Y+ A Q
Sbjct: 497 HFQNALLLVKKTQSNEKPWAAT----WANLGH----AYRKLKMYDAAIDALNQGL----- 543
Query: 864 GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
L A A ++ +
Sbjct: 544 -LLST--NDANVHTAIALVYLHKKIPGLAITHLHES 576
Score = 33.7 bits (77), Expect = 0.51
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 728 DLRQWREALALATSLGS-NQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPE 786
+Q++ A + + P + AQ TG +A+A K
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR------- 148
Query: 787 CQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFN---KLNDAV----- 838
C+ A +++ D++ + L E+N + A+ L + KL ++
Sbjct: 149 -SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 839 TLYESAGNYEKAATCYIQ 856
+Y + N+++A CY +
Sbjct: 208 QVYTNLSNFDRAKECYKE 225
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 37.8 bits (88), Expect = 0.023
Identities = 43/259 (16%), Positives = 70/259 (27%), Gaps = 75/259 (28%)
Query: 697 GHVAALLGNHDTAQQRY-----LTSDIPT---MALTLRRDLRQWREALA---LATSLGSN 745
G L + A + L + + MAL + D E A L SN
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA-DRNDSTEYYNYFDKALKLDSN 302
Query: 746 QTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQR--------KCKEGIAR 797
+ Q + + QA + K+ EL P+ P Q K +
Sbjct: 303 -NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET- 359
Query: 798 TSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESA------------- 844
F R + + N A+IL N + A+ Y+ A
Sbjct: 360 ------LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411
Query: 845 -----------------GNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKE 884
N+ +A +L +S I A+ K
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-----------RSEQAKIGLAQMKL 460
Query: 885 AMGSYRESVGAYERAEDYD 903
E++ +E + D
Sbjct: 461 QQEDIDEAITLFEESADLA 479
Score = 34.3 bits (79), Expect = 0.27
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 32/189 (16%)
Query: 841 YESAGNYEKAATCY---IQLK-NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 896
Y S G+ +K ++LK +++K+ ++ A A E +G + +++
Sbjct: 49 YVSVGDLKKVVEMSTKALELKPDYSKV------------LLRRASANEGLGKFADAMFDL 96
Query: 897 ERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI-LS 955
+ + I ++ K + ++ K GD A LS
Sbjct: 97 SVLSLNGD------FNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELS 144
Query: 956 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRA--AQYYYHAK 1013
Q++ +P E DK++ Y +
Sbjct: 145 TQPAKERKDKQENLPSVTSMASFFGIFKPEL-TFANYDESNEADKELMNGLSNLYKRSPE 203
Query: 1014 EYGRAMKLL 1022
Y +A +
Sbjct: 204 SYDKADESF 212
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 37.7 bits (88), Expect = 0.023
Identities = 29/253 (11%), Positives = 72/253 (28%), Gaps = 45/253 (17%)
Query: 727 RDLRQWREALALAT---SLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ 783
+ A+A + + A+ G+ +A+S + + +L D
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELREL-RAECFIKEGEPRKAISDLKAASKLK-NDNT 211
Query: 784 DPECQR-KCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYE 842
+ + + + + + R ++L + + + + A L
Sbjct: 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIR 269
Query: 843 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQY--AKAKEAMGSYRESVGAYERAE 900
G Y A + Y + + P I T + E++
Sbjct: 270 -DGRYTDATSKY------ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI------R 316
Query: 901 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQD 960
V++++ D+ K A+ + AI + Y+
Sbjct: 317 VCSEVLQMEPDN----------------VNALKDRAEAYLIEEMYDEAI------QDYET 354
Query: 961 AFNLSQQHKKLHE 973
A ++ +++ E
Sbjct: 355 AQEHNENDQQIRE 367
Score = 33.9 bits (78), Expect = 0.36
Identities = 21/187 (11%), Positives = 48/187 (25%), Gaps = 53/187 (28%)
Query: 825 ADILQQFNKLNDAVTLYE----------SAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874
L N ++ E +AG A + + P +
Sbjct: 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQF------HAAVDGDP--DNYI 61
Query: 875 TFIQYAKAKEAMGSYRESVGAYERA----------------------------EDYDNVV 906
+ + A AMG + ++ + +D+ V+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
Query: 907 RVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQ 966
+ + + ++K+ + + + GD+ AAI +
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAI------AFLDKILEVCV 174
Query: 967 QHKKLHE 973
+L E
Sbjct: 175 WDAELRE 181
Score = 33.5 bits (77), Expect = 0.51
Identities = 49/344 (14%), Positives = 95/344 (27%), Gaps = 74/344 (21%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR---- 810
A G+ AL K ++L D QR ++ G
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQR------GHLLLKQGKLDEAEDDFKK 119
Query: 811 -LAAESNSSVLKNECADIL--QQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLL 867
L + + + K + ++ + +L +G+Y A KI ++
Sbjct: 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL------DKILEVC 173
Query: 868 PHIKSATTFIQYAKAKEAMGSYRESVGAYERA---------------------------- 899
A A+ G R+++ + A
Sbjct: 174 V--WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231
Query: 900 EDYDNVVRVDLDH---LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI-----HF 951
+ +++D DH + + K + E R Y + + + +
Sbjct: 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291
Query: 952 LILSKCYQDAFNLSQQHKKLHEFGKFL------LEEDEPNPVELKRLAIHFEEDKDMFRA 1005
+ + K + + + L+ + N LK A + ++ A
Sbjct: 292 EYTVRSK---ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348
Query: 1006 AQYYYHAKE----YGRAMKLLLVTARQDKDS---DENLWLGVSI 1042
Q Y A+E + + L R K S D LGV
Sbjct: 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 37.3 bits (86), Expect = 0.039
Identities = 70/427 (16%), Positives = 134/427 (31%), Gaps = 80/427 (18%)
Query: 645 NQSETWRSFAEACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLG 704
N+ W A+A LQ AI +Y D+ +V+ + V L
Sbjct: 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP---SSYMEVVQAANTSGNWEELVKYLQM 108
Query: 705 NHDTAQQRYLTSDIPTMALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQH 764
A++ Y+ +++ AL L + E + G N I + +
Sbjct: 109 ARKKARESYVETEL-IFALAKTNRLAELEEFIN-----GPNNAHIQQV--GDRCYDEKMY 160
Query: 765 AQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSS------ 818
A Y +A T + +G+++ + A ++NS+
Sbjct: 161 DAAKLLYNNVSNFGR---------------LASTLVHLGEYQAAVDGARKANSTRTWKEV 205
Query: 819 ----------VLKNECA-DILQQFNKLNDAVTLYESAGNYEKA----------------- 850
L C I+ ++L + + Y+ G +E+
Sbjct: 206 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265
Query: 851 ----ATCYIQLKNWTKIGQLLPHIKSATTFIQYAK---AKEAMGSYRESVGAYERAEDYD 903
A Y + K ++ H++ + + K A E + E V Y++ E+YD
Sbjct: 266 FTELAILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321
Query: 904 NVVRVDLDHLNDIRHAVD----IVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC-Y 958
N + ++H D I K + I Y + ++ + +
Sbjct: 322 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDH 381
Query: 959 QDAFNLSQQHKKLHEFGKFLLEEDEPNPVE----LKRLAIHFEEDKDMFRAAQYYYHAKE 1014
A N + K+L +L N L L I E+ + + + Y +
Sbjct: 382 TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDN 441
Query: 1015 YGRAMKL 1021
A +L
Sbjct: 442 ISLAQRL 448
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 36.4 bits (84), Expect = 0.063
Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 36/201 (17%)
Query: 25 TGELLATTGRDSSVSIYN-----KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAV 79
+ LL T D S+++Y K+ L+ + + ++ DL + + +
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 80 NVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLID-------KITLP 132
+ + L CK ++ S ++ ++ID I +
Sbjct: 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS-WDGLIEVIDPRNYGDGVIAVK 140
Query: 133 GLCIVMDW--------DSEGDLLGIISSNSSAVNVWTLLTYTLGERIS------------ 172
L D+ L I+ N+S V + L
Sbjct: 141 NLNSNNTKVKNKIFTMDTNSSRL-IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199
Query: 173 --WSDDGQLLAVTTSGGSVKI 191
+ + A ++ G V +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAV 220
Score = 29.4 bits (66), Expect = 8.3
Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 51/187 (27%)
Query: 26 GELLATTGRDSSVSIYN----------KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSN 75
+ L D + + + + + MD +S ++G+ +S
Sbjct: 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ 171
Query: 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLC 135
+ TI +SGL+ + V++ K + ++ G
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRD-------------VALLPKEQEGYACSSIDGRV 218
Query: 136 IVMDWDSEGDLLGII--------------SSNSSAVNVWTLLTYTLGERISWSDDGQLLA 181
V +D +GD ++ + VN I +S + L
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN-----------SIEFSPRHKFLY 267
Query: 182 VTTSGGS 188
+ GS
Sbjct: 268 ---TAGS 271
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear
pore complex, nucleus, phosphoprotein, protein transport;
3.20A {Saccharomyces cerevisiae}
Length = 525
Score = 36.2 bits (83), Expect = 0.071
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 1136 HSYLLARYHVRNANHSLAAPLLIRVAENISFFPLHATSILTSTVIECKKANLQESALKFA 1195
S +L Y+ R + +A +L R+A + L S + S +
Sbjct: 219 ISNILWVYYSRRSKFFESAEILYRLATSNFDITLFERIEFLSRANGFCNSVSPLSQKQRI 278
Query: 1196 TLLLRPEYRSNLEDK---YRKQIELI--VRKAPRKDIASPEEA 1233
L ++D Q +++ V R D A +E
Sbjct: 279 VQLAS-----RIQDACEVAGIQGDILSLVYTDARIDSAIKDEL 316
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 35.4 bits (82), Expect = 0.13
Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 52/199 (26%)
Query: 15 GDVY-VCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLP-------GLCIVMDWDSE 65
+V + W + + A+ G + SI++ K K + ++ V++W +
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 66 GDLLGIISSNSSA---VNVWNTYTKKRTI--VDSGLRDPLTCLVWCKQCSMLQLSVSIYN 120
++ S + +W+ + ++ G + + L WC Q
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ------------ 273
Query: 121 KHGKLI-----DKITLPGLCIVMDWDSE-GDLLGIISSNSSAVNVWTLLTYTLGERISWS 174
L+ D L W+ E + L + + + ++
Sbjct: 274 -DEHLLLSSGRDNTV---LL----WNPESAEQLSQFPARGNWCF-----------KTKFA 314
Query: 175 DDGQLLAVTTSG-GSVKIY 192
+ L S +++
Sbjct: 315 PEAPDLFACASFDNKIEVQ 333
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 35.3 bits (82), Expect = 0.14
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 117 SIYNKHGKLIDKIT-----LPGL-----CIVMDWDSEGDLLGIIS-SNSSAVNVW----- 160
+ + + PG+ ++DW + +++ + V VW
Sbjct: 68 PVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLN----VVAVALERNVYVWNADSG 123
Query: 161 -TLLTYTLGER-----ISWSDDGQLLAVTTSGGSVKIY 192
E + WS DG L+V G V IY
Sbjct: 124 SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 34.9 bits (79), Expect = 0.17
Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 20/181 (11%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGII-- 72
+ + + G D + + G L+ + + + L
Sbjct: 56 ASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP---MKFPIHHLALSCDNLTLSACMM 112
Query: 73 -SSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITL 131
S S + ++ T + P K + + + ++
Sbjct: 113 SSEYGSIIAFFDVRTFSNEAKQQ--KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170
Query: 132 PGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKI 191
G V+ +E + ++ AV + WS G+ LAV G+V
Sbjct: 171 DGSIAVLQ-VTETVKVCATLPSTVAVT-----------SVCWSPKGKQLAVGKQNGTVVQ 218
Query: 192 Y 192
Y
Sbjct: 219 Y 219
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 35.0 bits (81), Expect = 0.18
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 33/192 (17%)
Query: 10 EPHGPGDVYVCWQ--RRTGELLATTGRDSSVSI-YNKHGKLIDKITLPG-LCIVMD--W- 62
H D + W R + E LA + + ++ K GKL LPG ++ W
Sbjct: 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA 223
Query: 63 -DSEGDLLGIIS-SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYN 120
I + + ++ K + M +
Sbjct: 224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD-AQGRSDS 282
Query: 121 KHGKLIDKITLPGLCIVMDWD-SEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQL 179
+ + + +LL ++ V +SW+ G +
Sbjct: 283 NTEEKAEL-----------QSNLQVELLSEHDDHNGEVW-----------SVSWNLTGTI 320
Query: 180 LAVTTSGGSVKI 191
L+ G V++
Sbjct: 321 LSSAGDDGKVRL 332
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA
processing, nucleus, spliceosome, RNA binding protein;
NMR {Saccharomyces cerevisiae}
Length = 109
Score = 32.6 bits (74), Expect = 0.20
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 1212 RKQIELIV-RKAPRKDIASPEEAHVLPCPYCDTMV-PDMMLH-CASCA--RIIPFCIASG 1266
R Q +LI+ K P E CP CD+ V P + C +C+ + CI
Sbjct: 5 RHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICN 64
Query: 1267 KHITRNELTKCLEC 1280
++ N+ C EC
Sbjct: 65 LNVGVNDAFYCWEC 78
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 34.6 bits (79), Expect = 0.20
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 30/276 (10%)
Query: 5 IFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIVMDWD 63
+F GDV R G + + K + +IT + +
Sbjct: 33 VFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92
Query: 64 SEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCL----------VWCKQCSMLQ 113
S+ + + + N T + T + C Q
Sbjct: 93 SDEKAY-VTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQ 151
Query: 114 LSVSIYN-KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERIS 172
+ + + K++D++T+ + D + I+ + + +L RI
Sbjct: 152 NRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW-TITDGGYEGSPYGYEAPSL-YRI- 208
Query: 173 WSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKGTPWTN 232
D + V K L P V N + + N + +E P
Sbjct: 209 ---DAETFTVEK---QFKFKLGDWPSEVQLNGTRDTLYWINNDIWRM--PVEADRVPVRP 260
Query: 233 FIIETEIEPSWREYHGLVV-ANNGKIAILSSLNQVS 267
F+ + + +GL V NNG++ + +++
Sbjct: 261 FLEFRDTKY-----YGLTVNPNNGEVYVADAIDYQQ 291
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 31.5 bits (72), Expect = 0.29
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 1277 CLECNFPAIHRHLVLIVDQEG--FCPLCRTDLRGRPLPTDIHINEFV 1321
C C + + + +G CP+CR + + + H+ V
Sbjct: 42 CQAC----LTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 34.1 bits (78), Expect = 0.39
Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 8/118 (6%)
Query: 731 QWREALAL---ATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPEC 787
L A + A G Q+ + L P +
Sbjct: 4 DGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVA 61
Query: 788 QR-KCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESA 844
+ + + R + + A E + + L+ + A Y A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALW-LGHALEDAGQAEAAAAAYTRA 117
Score = 30.2 bits (68), Expect = 4.8
Identities = 22/145 (15%), Positives = 36/145 (24%), Gaps = 33/145 (22%)
Query: 760 MTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR-----LAAE 814
MT + L + ++ P D +A + +GD G LA
Sbjct: 1 MTADGPRELLQLRAAVRHR-PQ--DFVAWL----MLADAELGMGDTTAGEMAVQRGLALH 53
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874
+ + +A L + A P +
Sbjct: 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQA----------SDAA---------P--EHPG 92
Query: 875 TFIQYAKAKEAMGSYRESVGAYERA 899
+ A E G + AY RA
Sbjct: 93 IALWLGHALEDAGQAEAAAAAYTRA 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 32.2 bits (73), Expect = 0.48
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Query: 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRL 811
+ GQ+ A+ Y + + + P +C + L L
Sbjct: 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Query: 812 AAE-SNSSVLKNECADILQQFNKLNDA 837
A L + +L+ +
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKEM 145
Score = 31.8 bits (72), Expect = 0.71
Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 828 LQQFNKLND---------AVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ 878
+ N+++ A Y+ +G YE A + L + + F+
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQAL--------CVLDHYDSRFFLG 60
Query: 879 YAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI-RHAVDIVKAKKCTEGAKRIAD 937
++AMG Y ++ +Y D H + ++ +A+ A+ +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 938 YCNKHGDFGAAI 949
+ + +
Sbjct: 121 NXPEFXELSTRV 132
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 31.3 bits (71), Expect = 0.52
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRPLPTDIHINEFV 1321
C C I + L + CP C + L + ++E V
Sbjct: 46 CSLC----IRKFL----SYKTQCPTCCVTVTEPDLKNNRILDELV 82
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 33.4 bits (76), Expect = 0.56
Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 40/249 (16%)
Query: 841 YESAGNYEKAATCY---IQLK----NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV 893
Y G+ A TC+ + + + +L +++ + +++ + +V
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 894 --------GAYERAEDYDNVVRVDLDHLNDIRHAVD-IVKAKKCTEGAKRIAD-YCNK-- 941
Y Y ++ + + A+ +A+K A D + N+
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266
Query: 942 ----HGDFGAAIHFLILSKCYQDA-----------FNLSQQHKKLHEFGKFLLEEDEPNP 986
+G A+ + + A Q + L L + + P
Sbjct: 267 LHKYEESYGEAL------EGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320
Query: 987 VELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDENLWLGVSIVSDS 1046
+L+ + Y A ++L ++ Q + + LG + S +
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLT 380
Query: 1047 HDEKLVETF 1055
+EK+ TF
Sbjct: 381 TEEKVPFTF 389
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 31.6 bits (72), Expect = 0.77
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 28/93 (30%)
Query: 833 KLNDAVTLYESA-----GNYEKA------ATCYIQLKNWTKIGQLLPHIKSATTFIQ--- 878
A+ Y A ++A A C+++L+++ K A+ I+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA------ETEASKAIEKDG 96
Query: 879 -YAKA-------KEAMGSYRESVGAYERAEDYD 903
KA E +G ++V +R +
Sbjct: 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 32.9 bits (75), Expect = 0.78
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 138 MDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERIS---WSDDGQLLAVTTSGGSVKIYL 193
M W+ ++ + + TLL E I+ W+ DG L+ T G ++
Sbjct: 212 MPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVATDRTGWWNLHR 269
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 32.6 bits (75), Expect = 0.90
Identities = 18/191 (9%), Positives = 48/191 (25%), Gaps = 41/191 (21%)
Query: 727 RDLRQWREALALAT---SLGSNQTPIISCDYAQQ---LEMTGQHAQALSFYQKSMELATP 780
D + A+ + + + G+ +A+S + + +L
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAEL----RELRAECFIKEGEPRKAISDLKAASKL--- 183
Query: 781 DIQDPEC----------QRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQ 830
+ E + ++ + R ++L + + + +
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLS-------EVRECLKL--DQDHKRCFAHYKQVKKL 234
Query: 831 FNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQY--AKAKEAMGS 888
+ A L G Y A + Y + + P + T +
Sbjct: 235 NKLIESAEELIR-DGRYTDATSKY------ESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 889 YRESVGAYERA 899
E++
Sbjct: 288 PVEAIRICSEV 298
Score = 32.2 bits (74), Expect = 1.1
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 19/170 (11%)
Query: 734 EALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKE 793
E + L A + A++F K +E+ + +E
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV------CVWD-AELRE 158
Query: 794 GIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATC 853
A I+ G+ R I +S LK++ + + Y+ G++E + +
Sbjct: 159 LRAECFIKEGEPRKAISDL--KAASKLKSDNTEAF-----YKISTLYYQL-GDHELSLSE 210
Query: 854 Y---IQLK-NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
++L + + +K I+ A+ G Y ++ YE
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260
Score = 31.5 bits (72), Expect = 1.7
Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 30/153 (19%)
Query: 758 LEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR-----LA 812
G+ AL K + L D QR ++ G L
Sbjct: 47 FLAMGKSKAALPDLTKVIALK-MDFTAARLQR------GHLLLKQGKLDEAEDDFKKVLK 99
Query: 813 AESNSSVLKNECADILQ---QFNKLNDAVTLYESAGNYEKAATCY---IQLKNWTKIGQL 866
+ + K + +++ + A+ ++ +Y A T +++ W
Sbjct: 100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVW------ 152
Query: 867 LPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
A A+ G R+++ + A
Sbjct: 153 -----DAELRELRAECFIKEGEPRKAISDLKAA 180
Score = 31.5 bits (72), Expect = 1.8
Identities = 22/168 (13%), Positives = 44/168 (26%), Gaps = 44/168 (26%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV 893
L L AG A + + P + + + A AMG + ++
Sbjct: 7 LELGKKLLA-AGQLADALSQF------HAAVDGDP--DNYIAYYRRATVFLAMGKSKAAL 57
Query: 894 GAYERA----------------------------EDYDNVVRVDLDHLNDIRHAVDIVKA 925
+ +D+ V++ + + +VKA
Sbjct: 58 PDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 926 KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 973
+ + D + D+ AAI + +L E
Sbjct: 118 DEMQRLRSQALDAFDG-ADYTAAI------TFLDKILEVCVWDAELRE 158
Score = 29.5 bits (67), Expect = 7.4
Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 30/156 (19%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPEC----------QRKCKEGIARTSIRVGD 804
++L GQ A ALS + +++ PD + K K + D
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGD-PD--NYIAYYRRATVFLAMGKSKAALP-------D 59
Query: 805 FRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYE-KAATCYIQLKNWTKI 863
I L + ++ +L + KL++A ++ K
Sbjct: 60 LTKVIALKMD-FTAARLQR-GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 864 GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
++ A Y ++ ++
Sbjct: 118 DEMQRLRSQAL-------DAFDGADYTAAITFLDKI 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.91
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 829 QQFNKLNDAVTLY--ESA 844
Q KL ++ LY +SA
Sbjct: 20 QALKKLQASLKLYADDSA 37
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE CIT PEG; 1.35A
{Bacteroides caccae}
Length = 276
Score = 32.1 bits (72), Expect = 0.92
Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 33/230 (14%)
Query: 6 FTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIV--MDWD 63
+ LE+ V + GE+L + + + + G+ + I P C +
Sbjct: 31 YPLEKGWECNSV---AATKAGEILFSYSKG--AKMITRDGRELWNIAAPAGCEMQTARIL 85
Query: 64 SEGDLLGIISSNSSAVNVWNTYTK--KRTIVDSGLRDPLTCLVWCKQ--------CSMLQ 113
+G+ L + S + N + +T ++G+ P +
Sbjct: 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT 145
Query: 114 LSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAV--------NVWTLLTY 165
V +G+L++ + L G + GD L V V +
Sbjct: 146 SEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205
Query: 166 TL-GERISW------SDDGQLLAVTTSGGSVKIYLSKLPKLV-VANNGKI 207
+ G ++ + +G L G + K P+LV + + GK+
Sbjct: 206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV 255
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 32.2 bits (74), Expect = 0.94
Identities = 37/285 (12%), Positives = 91/285 (31%), Gaps = 107/285 (37%)
Query: 8 LEEPHG------PGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIV-- 59
L P+ GD+ V + IYN++G+ + K L
Sbjct: 76 LLYPNRVAVVRNSGDIIVT----------ERSPTHQIQIYNQYGQFVRKFGATILQHPRG 125
Query: 60 MDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIY 119
+ D++G ++ +V+ + V I+
Sbjct: 126 VTVDNKGRII---------------------VVECK-----------------VMRVIIF 147
Query: 120 NKHGKLIDKITLPG-----LCIVMDWDSEGDLLGIIS-SNSSAVNVWTLLTYTLGERI-S 172
+++G ++ K +V++ + ++ IS + + V V+ G+ +
Sbjct: 148 DQNGNVLHKFGCSKHLEFPNGVVVN--DKQEI--FISDNRAHCVKVFN----YEGQYLRQ 199
Query: 173 WSDDGQL-----LAVTTSGGSVKIYLSKLPKLVVA---NNGKIAILSSLNQVSVYLRSIE 224
+G + + ++G +I +A NN + I + Q + ++E
Sbjct: 200 IGGEGITNYPIGVGINSNG---EIL--------IADNHNNFNLTIFTQDGQ---LISALE 245
Query: 225 RKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAILSSLNQVSVY 269
K + + + ++G + + S ++ +Y
Sbjct: 246 SKVKHA---------QC-----FDVALMDDGSVVLASKDYRLYIY 276
Score = 31.4 bits (72), Expect = 1.7
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 247 HGLVVANNGKIAILSSLNQ-VSVYLRSIERKGTPWTNFIIETEIEPSFLNMGPCHVAVGM 305
G+ V I + + N + ++ +++G F + + + P VAV
Sbjct: 33 SGVAVNAQNDIIVADTNNHRIQIF----DKEGRFKFQFGECGKRDSQL--LYPNRVAVVR 86
Query: 306 NNRVWVYG 313
N+ +
Sbjct: 87 NSGDIIVT 94
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 32.6 bits (75), Expect = 0.98
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 29/123 (23%)
Query: 74 SNSSAVNVWNTYTKKRTIVD--SGLRDPLTCLVWCKQCSMLQLSVS-IYNKHGKLIDKIT 130
V +W+T + P+ + W + + +V + G +
Sbjct: 78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI-AAVGEGRERFGHVFL--- 133
Query: 131 LPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSG-GSV 189
+D+ G G ++ + A+N + + ++ S +V
Sbjct: 134 ---------FDT-GTSNGNLTGQARAMN-----------SVDFKPSRPFRIISGSDDNTV 172
Query: 190 KIY 192
I+
Sbjct: 173 AIF 175
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 32.1 bits (74), Expect = 1.2
Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 24/150 (16%)
Query: 762 GQHAQALSFYQKSMELAT-------PDIQDPECQRKCKEGIARTSIRVGDFR----LGIR 810
G++ + +YQ+++E+ P++ K K +A ++ G F+ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVA------KTKNNLASCYLKQGKFKQAETLYKE 220
Query: 811 LAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKI-GQLLPH 869
+ ++ + + + E G + + + W K P
Sbjct: 221 ILTRAHEREFGSVDDENKPIWMHA---EEREECKGKQKDGTSFG-EYGGWYKACKVDSPT 276
Query: 870 IKSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ TT G + + E A
Sbjct: 277 V--TTTLKNLGALYRRQGKFEAAETLEEAA 304
Score = 30.2 bits (69), Expect = 5.1
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQ-LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMGSYRE 891
L++ V Y S G YE A Q L++ K G P + AT A Y++
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKD 87
Query: 892 SVGAYERA 899
+ A
Sbjct: 88 AANLLNDA 95
Score = 29.8 bits (68), Expect = 5.2
Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 35/202 (17%)
Query: 721 MALTLRRDLRQWREAL-----ALATS---LGSNQTPIISC--DYAQQLEMTGQHAQALSF 770
+AL R D ++++A ALA LG + + + + A G++ +A
Sbjct: 75 LALVYR-DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 133
Query: 771 YQKSMELAT-------PDIQDPECQRKCKEGIARTSIRVGDFRLGIRL---AAESNSSVL 820
++++E+ PD+ K +A G + A E + L
Sbjct: 134 CKRALEIREKVLGKDHPDVA------KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187
Query: 821 KNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQ--LKNWTKI-GQLLPHIKSATTFI 877
+ ++ + N L + Y G +++A T Y + + + G + ++
Sbjct: 188 GPDDPNVAKTKNNL---ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN--KPIWM 242
Query: 878 QYAKAKEAMGSYRESVGAYERA 899
+ +E G ++ E
Sbjct: 243 HAEEREECKGKQKDGTSFGEYG 264
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 30.5 bits (69), Expect = 1.2
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 760 MTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR-----LAAE 814
+ G AQA+ +Y+K++ EC G+ T +G++R +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYL----GLGSTFRTLGEYRKAEAVLANGVKQF 57
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESA----------GNYEKAATCYIQ 856
N L+ A +L + V L +Y++A Y
Sbjct: 58 PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 32.2 bits (72), Expect = 1.2
Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 17/138 (12%)
Query: 200 VVANNGKIAILSSLNQVSVYLRSIERKGTPWTNFIIETEIEPSWREYHGLVVANNGKIAI 259
+ NG+I + + L ++ I R Y ++G++
Sbjct: 249 SMDGNGQIVVTGGNDAKKTSLY------DSSSDSWIPGPDMQVARGYQSSATMSDGRVFT 302
Query: 260 LSSLNQVSVYLRSIER---KGTPWTNFIIETEIEPSFLNMGPCHVAVGMNNRVWVYGLN- 315
+ V+ ++ E WT+ + + + +N W++G
Sbjct: 303 IGGSWSGGVFEKNGEVYSPSSKTWTSL---PNAKVNPMLTADKQGLYRSDNHAWLFGWKK 359
Query: 316 ----PSVNNKSHTLVYKP 329
+ + + Y
Sbjct: 360 GSVFQAGPSTAMNWYYTS 377
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 29.9 bits (67), Expect = 1.2
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 812 AAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK 871
+ S +L++ AV ++ Y++A CY + I LL +K
Sbjct: 3 SGSSGQDSDSTAAVAVLKR------AVE-LDAESRYQQALVCYQE-----GIDMLLQVLK 50
Query: 872 SATTFIQYAKAKEAMGSYRESVGAYERAED 901
+ + + Y +RAE+
Sbjct: 51 GTKESSKRCVLRTKISGYM------DRAEN 74
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 32.1 bits (74), Expect = 1.3
Identities = 19/174 (10%), Positives = 43/174 (24%), Gaps = 47/174 (27%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIR---- 810
A + G A + +P+ ++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLL-LLSSIHFQCRRLDRSAHFSTL 58
Query: 811 -LAAESNSSVLKNECADILQQFNKLNDAVTLYESA---------------------GNYE 848
+ + + ++ ++ +L +A+ Y A G+ E
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 849 KAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
A Y +Q P + +A+G E+ Y +A
Sbjct: 119 GAVQAYVSALQYN---------PDL--YCVRSDLGNLLKALGRLEEAKACYLKA 161
Score = 31.0 bits (71), Expect = 3.0
Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 57/176 (32%)
Query: 758 LEMTGQHAQALSFYQKSMELATPDIQDPEC----------QRKCKEGIARTSIRVGDFRL 807
L+ G+ +A + Y K++E P+ Q + I F
Sbjct: 145 LKALGRLEEAKACYLKAIETQ-PN--FAVAWSNLGCVFNAQGEIWLAIH-------HFEK 194
Query: 808 GIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESA---------------------GN 846
+ L + N ++L++ + AV Y A G
Sbjct: 195 AVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 847 YEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ A Y I+L+ PH + A A + GS E+ Y A
Sbjct: 253 IDLAIDTYRRAIELQ---------PH--FPDAYCNLANALKEKGSVAEAEDCYNTA 297
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.7 bits (73), Expect = 1.5
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV 893
A ES +A + P + TT G +
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV--NTTLRSLGALYRRQGKLEAAH 272
Query: 894 GAYERA 899
+ A
Sbjct: 273 TLEDCA 278
Score = 29.8 bits (68), Expect = 5.3
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQ--LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMGSYR 890
N+ + Y G Y+ A T Y + + K G + ++ + +E+ R
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDN--KPIWMHAEEREESKDKRR 229
Query: 891 ESVGAYERA 899
+S E
Sbjct: 230 DSAPYGEYG 238
Score = 29.0 bits (66), Expect = 8.6
Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 58/192 (30%)
Query: 721 MALTLRRDLRQWREAL-----ALA---TSLGSNQTPIISCDY---AQQLEMTGQHAQALS 769
+AL R D +++EA ALA +LG + P ++ A G++ +A
Sbjct: 49 LALVYR-DQNKYKEAAHLLNDALAIREKTLGKDH-PAVAATLNNLAVLYGKRGKYKEAEP 106
Query: 770 FYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQ 829
++++E IR VL D+ +
Sbjct: 107 LCKRALE--------------------------------IRE------KVLGKFHPDVAK 128
Query: 830 QFNKLNDAVTLYESAGNYEKAATCYIQ-LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMG 887
Q N L L ++ G E+ Y + L+ + G P++ A T A G
Sbjct: 129 QLNNL---ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--AKTKNNLASCYLKQG 183
Query: 888 SYRESVGAYERA 899
Y+++ Y+
Sbjct: 184 KYQDAETLYKEI 195
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I*
3l7z_C
Length = 251
Score = 31.6 bits (71), Expect = 1.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 297 GPCHVAVGMNNRVWVYGLNPS 317
C + V N R+W +
Sbjct: 184 SGCSIFVANNGRIWATCPSRF 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 31.6 bits (71), Expect = 1.7
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 721 MALTLRRDLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780
++ ++ + +A+ L + + + EM G + +A Y + L P
Sbjct: 285 VSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR-P 341
Query: 781 DIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAE 814
+ GI +TS+ L LA+E
Sbjct: 342 GANTL---YWIENGIFQTSVPYVVPYLDKFLASE 372
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 31.7 bits (71), Expect = 1.8
Identities = 31/245 (12%), Positives = 73/245 (29%), Gaps = 26/245 (10%)
Query: 832 NKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRE 891
+ + + +EK+ T + I + I K ++ + +
Sbjct: 105 SSAQKGLKYTQHTLAFEKSCTLF-------NIAVIFTQIARENI---NEDYKNSIANLTK 154
Query: 892 SVGAYER-AEDYDNVVRVDLD-HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 949
+ +E +E++ N VDL + +A++ +K + +
Sbjct: 155 AFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKL 214
Query: 950 HFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYY 1009
+Q + ++ + E V K +++ Y
Sbjct: 215 SRAT-CNLFQKCHDFMKEID---DDVAIYGEPKWKTTVTCK---------LHFYKSLSAY 261
Query: 1010 YHAKEYGRAMKLLLVTARQDKDSDENLWLGVSIVSDSHDEKLVETFKTLLEGKLDGVKRN 1069
YH ++ A S + L + + + + FK LE K + ++
Sbjct: 262 YHGLHLEEENRVGEAIAFL-DFSMQQLISSLPFKTWLVEFIDFDGFKETLEKKQKELIKD 320
Query: 1070 PKFLY 1074
F+Y
Sbjct: 321 NDFIY 325
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 31.8 bits (73), Expect = 1.8
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 139 DWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSG-GSVKIY 192
WDS G+ LG +S +S +N + ++T GSV Y
Sbjct: 146 SWDS-GNSLGEVSGHSQRIN-----------ACHLKQSRPMRSMTVGDDGSVVFY 188
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 28.8 bits (64), Expect = 1.9
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 1235 VLPCPYCDTMVP--DMMLHCASCARIIPFCIASG--KHITRNELTK 1276
PC YC + H C R+ C + R +L
Sbjct: 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPG 55
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 29.7 bits (67), Expect = 1.9
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGF--CPLCRTDLRGRPLPTDIHINEFV 1321
C C + + L ++G CPLC+ D+ R L ++ V
Sbjct: 44 CKFC----MLKLLN---QKKGPSQCPLCKNDITKRSLQESTRFSQLV 83
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 30.4 bits (69), Expect = 2.1
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 851 ATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAK-------AKEAMGSYRESVGAYERA 899
+ Y++ + + + AT I+ Y K + A+G +R ++ YE
Sbjct: 54 SLAYLRTECYGYA------LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 107
Query: 900 EDYD---NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH 942
++ N I +A E + + D +
Sbjct: 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 29.9 bits (68), Expect = 2.1
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 851 ATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAKA-------KEAMGSYRESVGAYERA 899
A +L ++ + I I+ + +A + A+ Y ++ + A
Sbjct: 45 AAALAKLMSFPEA------IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
Query: 900 EDYD 903
D
Sbjct: 99 RTKD 102
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 30.0 bits (67), Expect = 2.1
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 841 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY-ERA 899
+ AGNYE+A Y + L +K Q KAK++ R Y +RA
Sbjct: 28 EDKAGNYEEALQLYQH-----AVQYFLHVVKYEA---QGDKAKQS---IRAKCTEYLDRA 76
Query: 900 E 900
E
Sbjct: 77 E 77
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA
degradation, exoribonuclease, S1domain, KH domain,
archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5
b.84.4.2 d.51.1.1
Length = 229
Score = 30.8 bits (69), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 297 GPCHVAVGMNNRVWVYGLNPSVNNKSHTL 325
+ VG N +WV G V+ +
Sbjct: 165 LDVQIVVGQNGLIWVNGDRRKVSIAEEAI 193
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 29.9 bits (68), Expect = 2.1
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 26/89 (29%)
Query: 841 YESAGNYEKAATCY---IQLK--------N----WTKIGQLLPHIKSATTFIQ----YAK 881
N+E A Y I+L N ++K+G ++ I Y+K
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 882 A-------KEAMGSYRESVGAYERAEDYD 903
A ++ + E+V Y++A + D
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELD 110
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 31.2 bits (70), Expect = 2.2
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 21 WQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEG 66
W ++ L +T + +++ +G LI I L + D E
Sbjct: 34 WSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVK-----DLET 74
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 30.0 bits (68), Expect = 2.5
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 17/64 (26%)
Query: 851 ATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAKA-------KEAMGSYRESVGAYERA 899
A CY++++ + + ++ KA + M SY E++ +RA
Sbjct: 50 ALCYLKMQQPEQA------LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103
Query: 900 EDYD 903
Sbjct: 104 YSLA 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 30.1 bits (68), Expect = 2.5
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 9/67 (13%)
Query: 837 AVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 896
A Y G E+A + L + + + A + ++++ Y
Sbjct: 43 AYDFYN-KGRIEEAEVFFRFL--------CIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93
Query: 897 ERAEDYD 903
A
Sbjct: 94 AVAFALG 100
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 29.6 bits (66), Expect = 2.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGF-CPLCRTDLRGRP-LPTDIHINEFV 1321
C +C + R + F CP CR DL + + + +
Sbjct: 75 CKDC----LDRSF----RAQVFSCPACRYDLGRSYAMQVNQPLQTVL 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.5 bits (69), Expect = 2.9
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 829 QQFNKLNDAVTLYESAGNYEKAATCY---IQLK-----NWTKIGQLLPHIKSATTFIQYA 880
Q +++ V+ AG +A + + I L + S+ + A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 881 KAKEAMGSYRESVGAYERA 899
A + +Y ++ Y+
Sbjct: 62 LAYKKNRNYDKAYLFYKEL 80
Score = 29.7 bits (67), Expect = 4.8
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 50/172 (29%)
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAA 813
GQ+ QA+S++++++ L +I E + + +
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMY----------------YWTNVDKNS 50
Query: 814 ESNSSVLKNECADILQQFNKLNDAVTLYESA---------------------GNYEKAAT 852
E +S + E A ++ + A Y+ G + A
Sbjct: 51 EISSKLA-TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109
Query: 853 CYIQLKNWTKIGQLLPHIKSATTFIQYAKA-KEAMGSYRESVGAYERAEDYD 903
Y KI QL + I ++ + +
Sbjct: 110 MY------EKILQLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 1277 CLECNFPAIHRHLVLIVDQEG--FCPLCRTDLRGRPLPTDIHINEFV 1321
C C I + + +G CP+CR L ++H+ V
Sbjct: 42 CRAC----ITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 31.2 bits (71), Expect = 3.1
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 660 NLEFSWAIRAY---QSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTS 716
N F+ A+ + Q D + L + + + LL +HDTA R LT
Sbjct: 373 NYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASE--VMFNLLDSHDTA--RLLT- 427
Query: 717 DIPTMALTLRRDLRQWREALAL 738
D R+ + A+
Sbjct: 428 -------QADGDKRKMKLAVLF 442
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 29.5 bits (67), Expect = 3.1
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 30/95 (31%)
Query: 835 NDAVTLYESAGNYEKAATCY---IQL--KN----------WTKIGQLLPHIKSATTFIQ- 878
N A+ S GN + A CY I+L N + K G + +
Sbjct: 12 NKAL----SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 879 ---YAK-------AKEAMGSYRESVGAYERAEDYD 903
+ K A E + + E+ YE ++
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 30.8 bits (70), Expect = 3.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 629 LKLLNWKEAWNICAVLNQSETWRSFAEACLQNLEFSWAIRAYQ 671
LK+ A ++ + WR+ +A LQ F AI A+
Sbjct: 663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFT 705
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 29.6 bits (66), Expect = 3.4
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGF-CPLCRTDLRGRP 1310
C +C + R + F CP CR DL
Sbjct: 101 CKDC----LQRSF----KAQVFSCPACRHDLGQNY 127
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1
domain, KH domain, hydrolase, RNA-binding, nuclear
protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5
d.51.1.1
Length = 175
Score = 30.0 bits (67), Expect = 3.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 297 GPCHVAVGMNNRVWVYGLNPS 317
VA+G+N ++WV S
Sbjct: 121 TKFEVAIGLNGKIWVKCEELS 141
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 30.6 bits (68), Expect = 3.7
Identities = 26/251 (10%), Positives = 64/251 (25%), Gaps = 50/251 (19%)
Query: 748 PIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRL 807
++ YA E ++ + S Y + + + D + + R +
Sbjct: 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT------LVYIQYMKFARRAEGIKS 374
Query: 808 GIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLL 867
G + ++ + A+ Y + + A +
Sbjct: 375 GRMIFKKAREDARTRHHVYVTA-------ALMEYYCSKDKSVAFKIFELGLKK------- 420
Query: 868 PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK 927
+ + Y + + +ER + +K
Sbjct: 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV------------------LTSGSLPPEK 461
Query: 928 CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL-----LEED 982
E R + + GD + + K + F ++ + E + ++
Sbjct: 462 SGEIWARFLAFESNIGDLASIL------KVEKRRFTAFREEYEGKETALLVDRYKFMDLY 515
Query: 983 EPNPVELKRLA 993
+ ELK L
Sbjct: 516 PCSASELKALG 526
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 30.6 bits (70), Expect = 4.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 924 KAKKCTEGAKRIADYCNKHG 943
KA+ C G + +YC G
Sbjct: 63 KARLCVRGKHLLYEYCAARG 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 30.5 bits (69), Expect = 4.0
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 140 WDSEGDLLGIISSNSSAVNVWTLLTYTLGERI---SWSDDGQLLAVTTSGGSVKI 191
W+ + ++G + S + LTY + + + AV++ G + +
Sbjct: 91 WNLKEIIVGEVYS--------SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 28.0 bits (62), Expect = 4.1
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 1236 LPCPYCDTMVP--DMMLHCASCARIIPFCIASGKHITRNELTK 1276
C +CD + + H C C G+++ +L
Sbjct: 18 AVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKT 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 30.3 bits (69), Expect = 4.2
Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 50/178 (28%)
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAA 813
YA L +A+A+ + K P + A + + L +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNR----RAVCYYELAKYDLAQKDIE 61
Query: 814 ESNSSV-LKNECAD-------ILQQFNKLNDAVTLYESA--------------------- 844
S V + IL + + + A+ Y++A
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121
Query: 845 GNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
GN+ A I+ F + +A Y ++ ++ +
Sbjct: 122 GNFPLAIQYMEKQIRPTT-----------TDPKVFYELGQAYYYNKEYVKADSSFVKV 168
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.6 bits (69), Expect = 4.3
Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 49/177 (27%)
Query: 26 GELLATTGRDSSVSIYN-KHGKLIDKITLPG-----LCIVMDWDSEGDLLGIISSNSSAV 79
E +A D ++ I + ++ + G I + ++G L I SS S +
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFS--SGVGHKKAVRHIQ--FTADGKTL-ISSSEDSVI 1027
Query: 80 NVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLI----DKITLPGLC 135
VWN T + ++ + + +L+ D +
Sbjct: 1028 QVWNWQTGDYVFLQ-AHQETVKDFRL--------------LQDSRLLSWSFDGT----VK 1068
Query: 136 IVMDWDSE-GDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKI 191
+ W+ G + + + V + S D + T++ + KI
Sbjct: 1069 V---WNVITGRIERDFTCHQGTVL-----------SCAISSDATKFSSTSADKTAKI 1111
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.8 bits (69), Expect = 4.3
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 346 LNANYSSALVNSRIQLHYLGDNQKTIPD----AFIKNRNYFAHTLVYKPQLLGDKEYLGT 401
L + A+ ++ L Q+ +P + A Q L + L
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLP 416
Query: 402 IT--SLLLNANYSSALVNSRIQLHYLGDNQKTIPD 434
+ + L + A+ + L Q+ +P
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPV 451
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 30.4 bits (69), Expect = 4.3
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 650 WRSFA-EACLQNLEFSWAIRAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDT 708
EA ++L + + L LE L + LL +HDT
Sbjct: 259 LGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRPEVVR--AQMNLLTSHDT 316
Query: 709 AQQRYLTSDIPTMALTLRRDLRQWREALAL 738
R L+ +R + + R ALAL
Sbjct: 317 P--RLLS--------LMRGSVERARLALAL 336
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 28.4 bits (63), Expect = 4.4
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 17/73 (23%)
Query: 834 LNDAVTL------YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG 887
L + L ++A YE+A T Y + L+ +K +
Sbjct: 10 LTKGIELVQKAIDLDTATQYEEAYTAYYN-----GLDYLMLALKYEKNPKSKDLIRAKFT 64
Query: 888 SYRESVGAYERAE 900
Y RAE
Sbjct: 65 EYL------NRAE 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 29.1 bits (66), Expect = 4.4
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 30/95 (31%)
Query: 835 NDAVTLYESAGNYEKAATCY---IQL--KN----------WTKIGQLLPHIKSATTFIQ- 878
N+ G+Y A Y ++ +N TK+ + + T I+
Sbjct: 21 NEYF----KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 879 ---YAKA-------KEAMGSYRESVGAYERAEDYD 903
+ K AM + ++ AYE A D
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR repeat,
ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A 3lca_A
Length = 537
Score = 30.5 bits (69), Expect = 4.5
Identities = 25/222 (11%), Positives = 54/222 (24%), Gaps = 31/222 (13%)
Query: 835 NDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 894
N + A N+ +A Y +L P + + + G + +
Sbjct: 30 NRGNHFFT-AKNFNEAIKYY------QYAIELDP--NEPVFYSNISACYISTGDLEKVIE 80
Query: 895 AYERA--------EDYDN--VVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD 944
+A + L + D + ++ +GA
Sbjct: 81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK 140
Query: 945 FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFR 1004
+ LSK + + L F E + V +++ +
Sbjct: 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS---SNYDTAYALLS 197
Query: 1005 AA---------QYYYHAKEYGRAMKLLLVTARQDKDSDENLW 1037
A + Y A + + + D+ L
Sbjct: 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239
Score = 30.5 bits (69), Expect = 4.5
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 38/164 (23%)
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAA 813
+A+ L G A+ Y + L + + + +G L
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRL------EEVQ--------EKIHVGIGP------LIG 423
Query: 814 ESNSSVLKNECADILQQFNKLNDAVTLYESA----GNYEKA----ATCYIQLKNWTK--- 862
++ ++ K N A+ L A E+A A +Q++ +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 863 -------IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
+ + + ATTF + AK ++ + + E
Sbjct: 484 LFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELT 527
Score = 30.1 bits (68), Expect = 5.4
Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 31/256 (12%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLG-IRLAAESNSSVL 820
G H + L+ P + + G F A + +
Sbjct: 1 GSHMNGEPDIAQLKGLS-PSQRQAYAVQLKNRGNHF-------FTAKNFNEAIKYYQYAI 52
Query: 821 KNECADILQQFNKLNDAVTLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFI 877
+ + + + N + Y S G+ EK +++K P A +
Sbjct: 53 ELDPNEPVFYSNI---SAC-YISTGDLEKVIEFTTKALEIK---------PDHSKA--LL 97
Query: 878 QYAKAKEAMGSYRESVGAYERAE---DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 934
+ A A E++G++ +++ D+D + N + A+ ++ + ++ R
Sbjct: 98 RRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLN-ENLSKDEGR 156
Query: 935 IADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAI 994
+ + + S L
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216
Query: 995 HFEEDKDMFRAAQYYY 1010
+ DM+ +
Sbjct: 217 LLTKSTDMYHSLLSAN 232
Score = 30.1 bits (68), Expect = 6.3
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 35/99 (35%)
Query: 825 ADILQQFNKLNDAVTLYESA---------------------GNYEKAATCY---IQLKNW 860
A L + ++ A +Y+ A + L
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-- 340
Query: 861 TKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
P ++ +IQ A G + ES +
Sbjct: 341 -------P--ENVYPYIQLACLLYKQGKFTESEAFFNET 370
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 30.7 bits (69), Expect = 4.5
Identities = 33/255 (12%), Positives = 74/255 (29%), Gaps = 31/255 (12%)
Query: 2 DKLIFTLEEPHG-PGDVY-VCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGL--- 56
TL + P ++ W +G +LA +G D+ V+++ ++ + +
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASW-SLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGG 299
Query: 57 -------CIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQC 109
++D + + + N + + T +
Sbjct: 300 GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTA---SYTFAKFSTGS 356
Query: 110 SMLQLSVSIYNKHGKLIDKITLPGLCIVMDW--DSEGDLLGIISSNSSAVNVWTLLTYTL 167
+L + + L + D D E + + I + S+ +
Sbjct: 357 MLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQIS------ 410
Query: 168 GERISWSDDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKG 227
S + S L KL ++ + + +QV + L ER
Sbjct: 411 ----ESSLLFKDALDYMEKTSSDYNLWKLSS-ILFDPVSYPYKTDNDQVKMALLKKERHC 465
Query: 228 TPWTNFIIETEIEPS 242
+ I ++I P
Sbjct: 466 RLTSW--IVSQIGPE 478
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 29.8 bits (68), Expect = 4.8
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 835 NDAVTLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRE 891
N A YE G YE A + ++ +++ + +K+ +G+
Sbjct: 43 NRAAAEYEK-GEYETAISTLNDAVEQG---------REMRAD--YKVISKSFARIGNAYH 90
Query: 892 SVGAYERAEDYDN 904
+G ++ +Y
Sbjct: 91 KLGDLKKTIEYYQ 103
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Length = 289
Score = 30.2 bits (67), Expect = 4.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 297 GPCHVAVGMNNRVWVYGLNPS 317
P + GMN R+WV
Sbjct: 239 YPLEIVFGMNGRIWVKAKTIQ 259
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 28.9 bits (65), Expect = 4.9
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 837 AVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 896
Y+ AG ++ A + L L A F+ ++++G Y +++ +Y
Sbjct: 25 GFNQYQ-AGKWDDAQKIFQALC------MLDH--YDARYFLGLGACRQSLGLYEQALQSY 75
Query: 897 ERA 899
Sbjct: 76 SYG 78
Score = 28.6 bits (64), Expect = 8.0
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 727 RDLRQWREALA---LATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATPDIQ 783
+ L + +AL + N P A+ G A S + + LA
Sbjct: 63 QSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
Query: 784 DPECQRKCK 792
+
Sbjct: 122 HEALAARAG 130
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 29.7 bits (66), Expect = 5.0
Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 13/125 (10%)
Query: 1210 KYRKQ-IELIVRKAPRKDIASPEEAHVLPCPYCDTMV-------PDMMLH--CASCARII 1259
+YR+Q + AP + +P+ P P H C C + +
Sbjct: 30 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 89
Query: 1260 PFCIASGKHITRNELTKCLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRPLPTDIHINE 1319
P + R +C C P HL + G C C L
Sbjct: 90 PDRRVEREQDPRVAPQQCAVCLQP--FCHLYWGCTRTG-CYGCLAPFCELNLGDKCLDGV 146
Query: 1320 FVFNE 1324
N
Sbjct: 147 LNNNS 151
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 30.3 bits (68), Expect = 5.0
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 1228 ASPEEAHVLP---CPYCDTMVPDMMLHCASCARIIPFCIASGKH 1268
+ + C YC ++ C SC + FC
Sbjct: 1 GAASMSPSASDNSCAYCGIDSAKCVIKCNSCKKW--FCNTKNGT 42
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 30.1 bits (67), Expect = 5.2
Identities = 20/204 (9%), Positives = 59/204 (28%), Gaps = 32/204 (15%)
Query: 19 VCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCI-----VMDWDSEGDLLGIIS 73
V +Q+ + + R + L L I + W + + +
Sbjct: 53 VIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112
Query: 74 -SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVS-----IYNKHGKLID 127
+N + +W + + L++ + L++ V + + I
Sbjct: 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172
Query: 128 KITLPGLCIVMDWDSEGDLLGIISSNSSAVNVW------------TLLTYTLGERISW-- 173
+ +S+ + +S++ +N+W + + E
Sbjct: 173 ANAHTYHINSISINSDYET--YLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230
Query: 174 -----SDDGQLLAVTTSGGSVKIY 192
+ ++S G++++
Sbjct: 231 AAEFHPNSCNTFVYSSSKGTIRLC 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 30.4 bits (68), Expect = 5.2
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 822 NECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAK 881
+ A + ++ D++ LY+ A Y+ T L + L +
Sbjct: 447 EQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSL-----LSDTLSASDLDQPLVGPDD 501
Query: 882 ---------AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK 927
A+ Y ++ G + + L +I ++ K+
Sbjct: 502 NSETNPVLLARRMASIYFDNAGISRQI---HVKNKEICMLLLNISSIRELYFNKQ 553
Score = 30.0 bits (67), Expect = 6.2
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 880 AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG-------- 931
A+ + G +S+ Y+ AE+YD V+ + L+D A D+ + +
Sbjct: 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVL 509
Query: 932 -AKRIADYCNKHGDFGAAIHFLILSKCYQ 959
A+R+A + IH C
Sbjct: 510 LARRMASIYFDNAGISRQIHVKNKEICML 538
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 29.1 bits (64), Expect = 5.2
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 826 DILQQFNKLNDAVTLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIK-SATTFIQYAK 881
+++ + L+DA AG Y++AA +++ + + H A A+
Sbjct: 7 EVVGAYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 65
Query: 882 AKEAMGSYRESVGAYERAEDYDN 904
A + S+ E++ + ++A Y N
Sbjct: 66 ALAGLRSFDEALHSADKALHYFN 88
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.8 bits (65), Expect = 5.4
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 841 YESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 897
Y G+Y K I++ + + A + + + Y++++ Y
Sbjct: 48 YFEKGDYNKCRELCEKAIEVGR----ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103
Query: 898 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKK 927
++ D L + A I+K ++
Sbjct: 104 KSLAEHR----TPDVLKKCQQAEKILKEQE 129
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 30.0 bits (68), Expect = 5.4
Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 53/195 (27%)
Query: 754 YAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQ----------RKCKEGIARTSIRVG 803
++ + Y ++ D+ DP+ Q + I
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAID------- 234
Query: 804 DFRLGIRLAAESNSSVLKNECADILQQFNKLNDAVTLYESA------------------- 844
F + + L N L ++ +AV Y A
Sbjct: 235 AFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292
Query: 845 --GNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 899
G Y +A + + + L+ ++ A + + R ++ ++
Sbjct: 293 NLGAYREAVSNFLTALSLQ---------RKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343
Query: 900 EDYDNVVRVDLDHLN 914
E + DLD L
Sbjct: 344 ELFQAANLGDLDVLL 358
Score = 29.6 bits (67), Expect = 7.4
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 45/174 (25%)
Query: 820 LKNECADILQQFNKLNDAVTLYESAGNYEKAATCY---IQLKN-----WTKIGQLLPHIK 871
+ D Q V + S G + +A + + ++ W ++G L +
Sbjct: 206 QNGDMIDPDLQTGL---GVLFHLS-GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261
Query: 872 SATTFIQYAKAKEAMGSYRESV--------------------GAYERA-EDYDNVVRVDL 910
+++EA+ +Y ++ GAY A ++ + +
Sbjct: 262 ---------RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Query: 911 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNL 964
N V A RIA + A + L AFNL
Sbjct: 313 KSRNQ--QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD-VLLRAFNL 363
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 28.9 bits (64), Expect = 6.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRP--LPTDIHINEFV 1321
C C I+ + ++ CP+CR D++ + L D IN+ V
Sbjct: 87 CSYC----INEWM----KRKIECPICRKDIKSKTYSLVLDNCINKMV 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 28.9 bits (65), Expect = 6.4
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 26/87 (29%)
Query: 843 SAGNYEKAATCY---IQL--KN----------WTKIGQLLPHIKSATTFIQ----YAK-- 881
+ Y KA Y + + N ++ GQ + A Y+K
Sbjct: 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82
Query: 882 -----AKEAMGSYRESVGAYERAEDYD 903
A+ M Y+ + AYE+ + +
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats,
isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1
d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 30.0 bits (67), Expect = 6.5
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 18/130 (13%)
Query: 970 KLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQD 1029
L F K + +L++ AI E+ F+ +Y +YG+ + L +
Sbjct: 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS 305
Query: 1030 KDSDE-------NLWLGVSIV---SDSHDEKLVETFKTLLEGKLDGVKRNPKFLYR---V 1076
+ + +L +++ + + + K L LD N K LYR
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL---GLD--SANEKGLYRRGEA 360
Query: 1077 LMNTGDYVAA 1086
+ ++ +A
Sbjct: 361 QLLMNEFESA 370
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein,
cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum
pernix} SCOP: b.40.4.5 d.51.1.1
Length = 235
Score = 29.3 bits (65), Expect = 6.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 297 GPCHVAVGMNNRVWVYGLNP 316
C + V N R+ + N
Sbjct: 177 TECKIFVARNGRIHLECPNE 196
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Length = 100
Score = 27.9 bits (62), Expect = 7.0
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGFCPLCRTDLRGRPLPTDIHINEFV 1321
C C I R L +Q CP CR L+ R L E
Sbjct: 46 CFSC----IRRWLT---EQRAQCPHCRAPLQLRELVNCRWAEEVT 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 29.7 bits (67), Expect = 7.2
Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 29/196 (14%)
Query: 7 TLEEPHGPGDVY-VCWQRRTGELLATTGRDSSVSIYN-----KHGKLIDKITLPGLCIV- 59
E P G G V+ V + +G LA G DSSV+I + + + + L L +
Sbjct: 199 CAEYPSG-GWVHAVGF-SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS 256
Query: 60 MDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIY 119
+ W +E ++ + + + + +SG + S +
Sbjct: 257 LLWANESAIVA--AGYNYSPILLQ-------GNESGWA-----HTRDLDAGTSKTSFTHT 302
Query: 120 NKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQL 179
G+ ++ + DL G S SS + T+ + ++
Sbjct: 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISS---LPTVHQNMIATLRPYAGTPGN 359
Query: 180 LA-VTTSG--GSVKIY 192
+ T+SG G V ++
Sbjct: 360 ITAFTSSGTDGRVVLW 375
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 1277 CLECNFPAIHRHLVLIVDQEGFCPLCRTDL-RGRPLP 1312
C C I RH CP C + + +PL
Sbjct: 39 CKSC----IVRHF----YYSNRCPKCNIVVHQTQPLS 67
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 29.6 bits (67), Expect = 7.9
Identities = 20/187 (10%), Positives = 50/187 (26%), Gaps = 45/187 (24%)
Query: 758 LEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIR-----VGDFRLGIRLA 812
++ + + ++E+ P+ D + G+ + R + L
Sbjct: 148 FAAPNEYRECRTLLHAALEMN-PN--DAQLH--ASLGVLYNLSNNYDSAAANLRRAVEL- 201
Query: 813 AESNSSVLKNECADILQQFNKLNDAVTLYESA---------------------GNYEKAA 851
+ + L N+ L N+ +A+ Y A Y+ AA
Sbjct: 202 -RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260
Query: 852 TCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 908
I ++ + T + +R + R + +
Sbjct: 261 KQLVRAIYMQ---------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311
Query: 909 DLDHLND 915
+++
Sbjct: 312 NVEPFAK 318
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 29.8 bits (67), Expect = 8.2
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 25/125 (20%)
Query: 634 WKEAWNICAVLNQSETWRSFAEACLQ---NLEFSWAIRAY--QSLDEAGMVWCLESLVEE 688
W + A + + + L + A+R ++ +E G+ E+L +
Sbjct: 342 WSTRVPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSLD 401
Query: 689 E--EDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRRDLRQWREALA-LATSLGSN 745
+ L GNHD A R ++ D +WR L L T
Sbjct: 402 YLYPEPQNL----VLFGGNHDMA--RMFSA--------AGEDFDRWRMNLVFLMTMPR-- 445
Query: 746 QTPII 750
P
Sbjct: 446 -IPQF 449
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 28.4 bits (64), Expect = 8.8
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 26/86 (30%)
Query: 844 AGNYEKAATCY---IQL--KN----------WTKIGQLLPHIKSATTFIQ----YAK--- 881
G+Y +A Y I+ K+ +TK+ + +K IQ + K
Sbjct: 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88
Query: 882 ----AKEAMGSYRESVGAYERAEDYD 903
A EAM Y +++ Y++A D D
Sbjct: 89 RKAAALEAMKDYTKAMDVYQKALDLD 114
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix,
transferase; HET: GOL; 1.65A {Escherichia coli} SCOP:
a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Length = 618
Score = 29.3 bits (65), Expect = 9.6
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 721 MALTLRRDL-------RQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQK 773
A TL+ WR LA + T C+Y TGQ +A ++
Sbjct: 70 PARTLQSRFVNELARREDWRGLLAFSPEK--PGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127
Query: 774 SMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESN 816
T Q C + A + IRLA ++
Sbjct: 128 L--WLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 26.8 bits (59), Expect = 9.7
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 27/73 (36%)
Query: 1238 CPYCDTMV---PDMMLHCASCARIIPFCIASGKHITRNELTKCLECNFPAIHRHLVLIVD 1294
CP C T P + L C H C C + L V
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVC-----------GHTL------CESC----VDL---LFVR 41
Query: 1295 QEGFCPLCRTDLR 1307
G CP C T LR
Sbjct: 42 GAGNCPECGTPLR 54
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 29.3 bits (66), Expect = 9.9
Identities = 27/231 (11%), Positives = 52/231 (22%), Gaps = 45/231 (19%)
Query: 724 TLRRDLRQWREALAL---ATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSMELATP 780
++ L + L + A L Q I + + L ++ L TP
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAI-ASNGGGKQALETVQRLLPVLCQAHGL-TP 341
Query: 781 DIQDPECQR---KCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKLNDA 837
K + + L V Q +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLP--VLCQAHGL--TPEQVVAIASNGGGKQALETVQRL 397
Query: 838 VTLYESA---------------------GNYEKAATCYIQLKNWTKIGQLLPHIKSATTF 876
+ + A ++ + L P +
Sbjct: 398 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL------CQAHGLTP--QQVVAI 449
Query: 877 IQYAKAKEAMGSYRESVGAYERA--EDYDNVVRVDLDHLNDIRHAVDIVKA 925
+ A+ S + + A ++ + L L R A+D VK
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTNDHLVA-LACLGG-RPALDAVKK 498
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,086,792
Number of extensions: 1223644
Number of successful extensions: 3542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3306
Number of HSP's successfully gapped: 212
Length of query: 1324
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1219
Effective length of database: 3,770,088
Effective search space: 4595737272
Effective search space used: 4595737272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)