RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12365
(1324 letters)
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 42.4 bits (98), Expect = 2e-04
Identities = 11/170 (6%), Positives = 42/170 (24%), Gaps = 5/170 (2%)
Query: 26 GELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIV--MDWDSEGDLLGIISSNSSAVNVW 82
E + T +++ + + + +P + +++++ +
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 83 NTYTKK--RTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLCIVMDW 140
+ T K S + + ++ S V + ++ + + +
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 141 DSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVK 190
+ L L+ + + +G
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177
Score = 35.5 bits (80), Expect = 0.040
Identities = 10/122 (8%), Positives = 27/122 (22%), Gaps = 10/122 (8%)
Query: 81 VWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYN-KHGKLIDKITLPGLCIVMD 139
W + + + L + K GK + +
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 256
Query: 140 WDSEGDLLGIISSNSSAVNVWTLLTYTLGERI---------SWSDDGQLLAVTTSGGSVK 190
I + + + L L + ++ G L + + +
Sbjct: 257 GLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 316
Query: 191 IY 192
++
Sbjct: 317 VF 318
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow
(Bos taurus) [TaxId: 9913]}
Length = 336
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/245 (10%), Positives = 71/245 (28%), Gaps = 27/245 (11%)
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874
++ + D + A LY + N+ + A+ + L + S
Sbjct: 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 70
Query: 875 TFIQYAKAKEAMGSYR-----------------ESVGAYERAEDYDNVVRVDLDHLNDIR 917
T+ + A +R E + Y+ ++ ++ + L R
Sbjct: 71 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER 130
Query: 918 HAVDIVK---AKKCTEGAKRIADYCNKHG---DFGAAIHFLILSKCYQDAFNLSQQHKKL 971
+ + +++ ++ + + + + + L ++++
Sbjct: 131 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 190
Query: 972 HEFGKFLLEE--DEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQD 1029
++ D + K + + +RA Q+Y K + LL+
Sbjct: 191 DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL--LLNDLLMVLSPR 248
Query: 1030 KDSDE 1034
D
Sbjct: 249 LDHTR 253
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 38.6 bits (88), Expect = 0.004
Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 27/179 (15%)
Query: 16 DVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCI-VMDWDSEGDLLGIIS 73
DV L + D+S +++ + G T I + + G+ S
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 74 SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPG 133
+++ ++ + + + ++ ++K G+L+
Sbjct: 246 DDATCRLFDLRADQE-------------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 134 LCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKIY 192
C V D D G+++ + + V+ + +DDG +A + +KI+
Sbjct: 293 NCNVWDALK-ADRAGVLAGHDNRVS-----------CLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.2 bits (87), Expect = 0.005
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 3 KLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIV--- 59
T + G AT D++ +++ I
Sbjct: 217 MCRQTFTGHESD--INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 60 -MDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSML 112
+ + G LL + + NVW+ R V +G + ++CL +
Sbjct: 275 SVSFSKSGRLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/214 (12%), Positives = 61/214 (28%), Gaps = 41/214 (19%)
Query: 18 YVCWQRRTGELLATTGRDSSVSIY--NKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSN 75
G+ + + RD ++ ++ + ++ + +G L+ SN
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCSN 163
Query: 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLS------VSIYNKHGKLIDKI 129
V VW TK+ R + C+ W + S +S K G +
Sbjct: 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 130 TLPGLCIVMD---------------------WDSEGDLLGIISSNSSAVNVWTLLTYTLG 168
+ + D + S G + + ++ + VW
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCM 282
Query: 169 ER----------ISWSDDGQLLAVTTSGGSVKIY 192
+ + + + + +VK++
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 37.4 bits (85), Expect = 0.010
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 16 DVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIV-MDWDSEGDLLGIIS 73
+ G L + RD ++ +++ G + + + + + S G + +
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI-LSC 265
Query: 74 SNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSML 112
++ + VW+ K+ + +T L + K +
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 36.7 bits (83), Expect = 0.018
Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 19/195 (9%)
Query: 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIV--------MDW 62
G V G+ +A D +V +++ + G L++++ + +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 63 DSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKH 122
+G + + S +V +WN DS + TC V LSV+ ++
Sbjct: 263 TRDGQSV-VSGSLDRSVKLWNLQNANN-KSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQN 319
Query: 123 GKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAV 182
+ I + + D S G+ L ++ + ++V + + S + + A
Sbjct: 320 DEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVI-----SVAVANGSSLGPEYNVFAT 373
Query: 183 TTSGGSVKIY-LSKL 196
+ +I+ K+
Sbjct: 374 GSGDCKARIWKYKKI 388
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 36.4 bits (82), Expect = 0.019
Identities = 26/278 (9%), Positives = 66/278 (23%), Gaps = 9/278 (3%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAE 814
AQ G +A + ++E P + + G+ + L +
Sbjct: 19 AQVAINDGNPDEAERLAKLALEELPPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQ 76
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874
+ + + L + + G + A + L
Sbjct: 77 TEQ--MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134
Query: 875 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 934
A+ A E+ + + + + + +
Sbjct: 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 194
Query: 935 IADYCNKHGDFG-----AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL 989
+ N G+ + + +Q + + L K + +
Sbjct: 195 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254
Query: 990 KRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTAR 1027
+ +A + A E R+++L+ R
Sbjct: 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 35.9 bits (81), Expect = 0.027
Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 18 YVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSS 77
V + G + + D+S+ +++ + + + ++L + + S
Sbjct: 179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL-VSGNADS 237
Query: 78 AVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLCIV 137
V +W+ T + G + + + ++ S + KL D +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS-DDGTVKLWD---------L 287
Query: 138 MDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKIYL 193
+ +L+ + S S V VW I S+ + AV + G+ + L
Sbjct: 288 KTGEFIRNLVTLESGGSGGV-VWR---------IRASNTKLVCAVGSRNGTEETKL 333
Score = 31.7 bits (70), Expect = 0.65
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 14/245 (5%)
Query: 15 GDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLP--GLCIVMDWDSEGDLLGI 71
V C Q G + + D+++ +++ GK + + G+ D+
Sbjct: 17 DHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75
Query: 72 ISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITL 131
+ S +R S + G+ + +
Sbjct: 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135
Query: 132 PGLCIVMDWDSEGDLLGIISSNSSAVN-------VWTLLTYTLGERISWSDDGQLLAVTT 184
+ ++ V + TL +T S DG + +
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT-NRVYSLQFDGIHVVSGS 194
Query: 185 SGGSVKIYLSKLPKLVVANNGKIAILSSLNQVSVYLRSIERKGTP--WTNFIIETEIEPS 242
S++++ + + G ++ S + L S T W +
Sbjct: 195 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 243 WREYH 247
H
Sbjct: 255 GPNKH 259
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 35.2 bits (79), Expect = 0.048
Identities = 16/185 (8%), Positives = 36/185 (19%), Gaps = 31/185 (16%)
Query: 16 DVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSN 75
Y + L S ++ ++ +I
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRV-------------VLNFSFEVVSKPFVIPLI 226
Query: 76 SSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLC 135
+ N + T G I L
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV----------DPGDYRMIIPLESSI 276
Query: 136 IVMDWDSEGDLLGIISSNSS--AVNVWTLLTYTLGE------RISWSDDGQLLAVTTSGG 187
++ G+ + + + T + E + S D + + V G
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 188 SVKIY 192
+ +
Sbjct: 337 KIYTF 341
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 34.8 bits (78), Expect = 0.065
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 11 PHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIVMDWDSEGDLL 69
H + + + G+ +TG+D+ ++ + +G I + + D + +
Sbjct: 263 LHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 70 GIISSNSSAVNVWN 83
+ S V+
Sbjct: 322 -VTGSGDKKATVYE 334
Score = 32.1 bits (71), Expect = 0.47
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 135 CIVMDWDSEGDLLGIISSNSSAVNVWTLLT----YTLGER-----ISWSDDGQLLAVTTS 185
+ + + G + + + +N W + E S D + + +
Sbjct: 268 VLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG 326
Query: 186 GGSVKIY 192
+Y
Sbjct: 327 DKKATVY 333
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 34.6 bits (78), Expect = 0.067
Identities = 22/216 (10%), Positives = 61/216 (28%), Gaps = 21/216 (9%)
Query: 835 NDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 894
A T+Y A +++ ++ K + ++ T+++ K ++ G+ +V
Sbjct: 41 VQAATIYRLRKELNLAGDSFLKAADYQK--KAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98
Query: 895 AYERA-----EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 949
+ E A + D+ K + + ++ + +
Sbjct: 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158
Query: 950 H-------FLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDM 1002
L Y +A ++ + K + + ++ + +
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218
Query: 1003 FRAAQYYY-------HAKEYGRAMKLLLVTARQDKD 1031
R Q ++E L+ D +
Sbjct: 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254
Score = 32.2 bits (72), Expect = 0.36
Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 8/228 (3%)
Query: 755 AQQLEMTGQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAE 814
A + + A + K+ + + E + G+ + + E
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-AGNTYVEAYKCFKSGGNSVNAVD-SLE 101
Query: 815 SNSSVLKNECADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT 874
+ + + K L +Y KA CY W Q +
Sbjct: 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN--K 159
Query: 875 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIV--KAKKCTEGA 932
FI+ A K G Y E+ Y + R+ L D + A A
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 933 KRIADYCNKHGDFGAAIHFLILSKCYQ--DAFNLSQQHKKLHEFGKFL 978
+ + + ++ +F + L + + Q + EF F+
Sbjct: 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
Score = 28.4 bits (62), Expect = 5.4
Identities = 19/180 (10%), Positives = 43/180 (23%), Gaps = 27/180 (15%)
Query: 843 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY 902
+ +E+AA +Q A + ++ +A DY
Sbjct: 29 DSYKFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADY 66
Query: 903 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF 962
+ + N A K+ + + N F F + +
Sbjct: 67 QKKAGNEDEAGNTYVEAYKCFKSGGNSV--NAVDSLENAIQIFTHRGQFRRGANFKFELG 124
Query: 963 NLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLL 1022
+ + + + E + +K + A +Y A +
Sbjct: 125 EILENDLHDYAKAI---DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 34.8 bits (78), Expect = 0.067
Identities = 6/66 (9%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 27 ELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIV---MDWDSEGDLLGIISSNSSAVNVW 82
+ + R + + + + + IT+ G + + S ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 83 NTYTKK 88
+ T +
Sbjct: 62 DLVTGE 67
Score = 32.9 bits (73), Expect = 0.22
Identities = 10/108 (9%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 115 SVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERI--- 171
+ + + + + + + + + + L +R+
Sbjct: 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP 279
Query: 172 ------SWSDDGQLLAVTTSGGSVKIY----LSKLPKLVVANNGKIAI 209
+ S DG + + + G + Y L K ++ + N +++
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.8 bits (78), Expect = 0.073
Identities = 22/200 (11%), Positives = 59/200 (29%), Gaps = 26/200 (13%)
Query: 15 GDVY-VCWQRRTGELLATTGRDSSVSIYN------------KHGKLIDKITLPGLCIVMD 61
D++ V + D + +++ + + K L + ++
Sbjct: 15 ADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 62 WDSEGDLLGIISSNSS--AVNVWNTYTKKRTIVDSGLRDP-LTCLVWCKQCSMLQLSVSI 118
+ + L ++++ S + + + T + L + L+ S
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 119 YNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGER------IS 172
+ + G + + D ++ N S + +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 173 WSDDGQLLAVTTSGGSVKIY 192
S+ G L+A + G+V+I
Sbjct: 192 ISERG-LIATGFNNGTVQIS 210
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 34.3 bits (77), Expect = 0.087
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 10 EPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPG 55
G C L V ++NK G I +I +PG
Sbjct: 223 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPG 268
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.3 bits (74), Expect = 0.16
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 12 HGPGDVYVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPG--LCIVMDWDSEGDL 68
G V+ G +A+ D ++ I+N K+ I + +
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295
Query: 69 LGIISSNSSAVNVWN 83
L + S + +N N
Sbjct: 296 L-VSISANGFINFVN 309
Score = 28.7 bits (62), Expect = 4.9
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 52 TLPGLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSM 111
T G +V+ GD + N ++V + T + + T
Sbjct: 15 TARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72
Query: 112 L 112
Sbjct: 73 C 73
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 33.3 bits (74), Expect = 0.21
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 6/126 (4%)
Query: 19 VCWQRRTGELLATTGRDSSVSIYNKH-GKLIDKITLPG---LCIVMDWDSEGDLLGIISS 74
W + +A + V IY K K + L +DW + + + +
Sbjct: 13 HAW-NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCG 70
Query: 75 NSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGL 134
VW + LR + + +V ++ +
Sbjct: 71 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 135 CIVMDW 140
+
Sbjct: 131 WVCKHI 136
Score = 32.1 bits (71), Expect = 0.40
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 122 HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL------LTYTLGE------ 169
H L++ I+ C W+ + + I N+ V+++ + L E
Sbjct: 3 HSFLVEPIS----CH--AWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT 55
Query: 170 RISWSDDGQLLAVTTSGGSVKIY 192
+ W+ D + + + ++
Sbjct: 56 GVDWAPDSNRIVTCGTDRNAYVW 78
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1
protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 30.2 bits (68), Expect = 0.29
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 825 ADILQQFNKLNDAVTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKE 884
++ + + + A + AGNYE+A Y + L +K KAK+
Sbjct: 6 PNLQKAIDLASKAAQE-DKAGNYEEALQLYQH-----AVQYFLHVVKYEAQG---DKAKQ 56
Query: 885 AMGSYRESVGAY-ERAEDYDNVVR 907
+ R Y +RAE ++
Sbjct: 57 S---IRAKCTEYLDRAEKLKEYLK 77
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40,
RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Length = 85
Score = 29.7 bits (67), Expect = 0.47
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 298 PCHVAVGMNNRVWVYGLNP 316
VA+G+N ++WV
Sbjct: 32 KFEVAIGLNGKIWVKCEEL 50
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.8 bits (70), Expect = 0.48
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 18 YVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPG---LCIVMDWDSEGDLLGIIS 73
+ AT G D+++ +++ K + K TL + + G+ I
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 74 SNSSAVNVWN 83
S +N +
Sbjct: 315 SLDGTLNFYE 324
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40,
RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 29.2 bits (66), Expect = 0.60
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 298 PCHVAVGMNNRVWV 311
P + GMN R+WV
Sbjct: 31 PLEIVFGMNGRIWV 44
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 30.2 bits (67), Expect = 0.62
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 5/112 (4%)
Query: 55 GLCIVMDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGL----RDPLTCLVWCKQCS 110
C+ E + +GI + + N +YT + I L + K
Sbjct: 18 NQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHH 77
Query: 111 MLQLSVSIYNKHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTL 162
+ + Y+ + + C+ + + + I S W L
Sbjct: 78 LKGNQLWEYDPVKLTLQHVN-SNQCLDKATEEDSQVPSIRDCTGSRSQQWLL 128
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 30.7 bits (68), Expect = 0.90
Identities = 11/151 (7%), Positives = 41/151 (27%), Gaps = 10/151 (6%)
Query: 762 GQHAQALSFYQKSMELATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLK 821
++ +A + Y +++ + C + + + D R + L + S
Sbjct: 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAH 75
Query: 822 NECADILQQFNKLNDAVTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHIKSA 873
+ ++A+ + A N+ +++ + +
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 135
Query: 874 TTFIQYAKAKEAMGSYRESVGAYERAEDYDN 904
+ + + + +R +
Sbjct: 136 ESELHSYLTRLIAAERERELEECQRNHEGHE 166
Score = 28.8 bits (63), Expect = 3.5
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 752 CDYAQQLEMTGQHAQALSFYQKSMELATPDIQDPECQR-KCKEGIARTSIRVGDFRLGIR 810
Q + +A++ Q++ LA + + IA+ I
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNSIEERRIH 134
Query: 811 LAAESNSSVLKNECADILQQFNKLNDAVTLYESAGNYEK 849
+E +S + + A+ ++ + +E G+
Sbjct: 135 QESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Score = 28.0 bits (61), Expect = 5.6
Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 29/206 (14%)
Query: 832 NKLNDAVTLYESAGNYEKAATCY-------------------IQLKNWTKIGQLLPHIKS 872
+L + Y +AA CY LK L ++
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 873 ATTFIQYAKAKEAMGSYRESVGAYERA-EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG 931
Q KA +G + + +Y+ A + + + + +
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI---------PS 115
Query: 932 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKR 991
A RIA + IH Y +++ ++L E + ++ + ++
Sbjct: 116 ALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ 175
Query: 992 LAIHFEEDKDMFRAAQYYYHAKEYGR 1017
I + DK M + + E +
Sbjct: 176 ACIEAKHDKYMADMDELFSQVDEKRK 201
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 29.1 bits (65), Expect = 0.96
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 834 LNDAVTLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRES 892
L AV L ++ Y++A CY + + ++ + K M
Sbjct: 19 LKRAVEL-DAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRT--KISGYM------ 69
Query: 893 VGAYERAE 900
+RAE
Sbjct: 70 ----DRAE 73
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 30.6 bits (67), Expect = 1.2
Identities = 24/193 (12%), Positives = 53/193 (27%), Gaps = 2/193 (1%)
Query: 2 DKLIFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYNKHGKLIDKITLPGLCIVMD 61
KL + E V +A+ R + ++ G + + +
Sbjct: 51 SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 110
Query: 62 WDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNK 121
++ + N T+ + V+ I +
Sbjct: 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK-VNINGGAPQRITWE 169
Query: 122 HGKLIDKITLPGLCIVMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLA 181
+ D ++ S G I + + V L + L E S + +G ++
Sbjct: 170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI 229
Query: 182 VTTS-GGSVKIYL 193
++S G + L
Sbjct: 230 YSSSQGMGSVLNL 242
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 30.2 bits (66), Expect = 1.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 171 ISWSDDGQLLAVTTSGGSVKIY 192
I LL +T+ GS+ +Y
Sbjct: 17 IKIIPSKSLLLITSWDGSLTVY 38
Score = 27.9 bits (60), Expect = 8.6
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 6/112 (5%)
Query: 5 IFTLEEPHGPGDVYVCWQRRTGELLATTGRDSSVSIYN-----KHGKLIDKITLPGLCIV 59
I +E+ + + LL T D S+++Y K+ L+ + +
Sbjct: 3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 60 MDWDSEGDLLGIISSNSSAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSM 111
++ DL + + + + + L CK
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 14/75 (18%)
Query: 1249 MLHCASCARII--PFCIASGKHITRNELTKCLECNFPAIHRHLVLIVDQEGFCPLCRTDL 1306
+L C C +I P + + K L CPLC+ D+
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK------------KGPSQCPLCKNDI 68
Query: 1307 RGRPLPTDIHINEFV 1321
R L ++ V
Sbjct: 69 TKRSLQESTRFSQLV 83
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 28.6 bits (62), Expect = 4.8
Identities = 37/316 (11%), Positives = 75/316 (23%), Gaps = 50/316 (15%)
Query: 616 NPKQTLDISLHKVLKLL---NWKEAWNIC-AVL----NQSETWRSFAEACLQNLEFSWAI 667
NP + + L+ L + A + A + E W+ +N + AI
Sbjct: 14 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73
Query: 668 RAYQSLDEAGMVWCLESLVEEEEDTSILCGHVAALLGNHDTAQQRYLTSDIPTMALTLRR 727
A + E + AL + + +I L
Sbjct: 74 SALRRCLELKPDNQ---------------TALMALAVSFTNESLQRQACEILRDWLRYTP 118
Query: 728 DLRQWREALALATSLGSNQTPIISCDYAQQLEMTGQHAQALSFYQKSME----------- 776
S L + + ++
Sbjct: 119 AYAHLVTPAEEGAG---GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175
Query: 777 --LATPDIQDPECQRKCKEGIARTSIRVGDFRLGIRLAAESNSSVLKNECADILQQFNKL 834
L E + A S+R D+ L +L A + E ++ +L
Sbjct: 176 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235
Query: 835 NDA--------VTLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAK 883
+ G + +A + + ++ ++ + S + A
Sbjct: 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 295
Query: 884 EAMGSYRESVGAYERA 899
+G A R
Sbjct: 296 SMLGQSDAYGAADARD 311
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 28.3 bits (62), Expect = 5.7
Identities = 29/177 (16%), Positives = 46/177 (25%), Gaps = 18/177 (10%)
Query: 1076 VLMNTGDYVAASSCALDVARDEAA-----------RGSYRNCHETLYSTIQELKKHKLQV 1124
+ + D+ A V + + + +I KH
Sbjct: 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDKHLAVA 72
Query: 1125 GNDLMAGLMIIHSYLLARYHVRNANHSLAAPLLIRVAENISFFPLHATSILTSTVIECKK 1184
Y LA ++ A L LI F L A +L + K
Sbjct: 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132
Query: 1185 ANLQESALKFAT--LLLRPEYRSNLEDK----YRKQIELIVRKAPRKDIASPEEAHV 1235
+ A + ++ E R + DK KQ P + P E V
Sbjct: 133 KEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQV 189
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter
pylori [TaxId: 210]}
Length = 265
Score = 28.3 bits (61), Expect = 6.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 985 NPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRA 1018
+P EL L ++KD +A +Y+ A +
Sbjct: 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN 34
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme,
N-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Length = 313
Score = 28.0 bits (62), Expect = 7.0
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 175 DDGQLLAVTTSGGSVKIYLSKLPKLVVANNGKIAIL----SSLNQVSVYLRSIERKGTPW 230
D +LL V S GSV YL + V N I + + +V + +R + +
Sbjct: 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRV-ILVRDVSKGAEQH 82
Query: 231 TNFII-------ETEIEPSWREYHGLVVANNGKIAILSSLNQVSVYLRSIE 274
F + E +E + + L + G+ + + + V L +++
Sbjct: 83 ALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALD 132
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 28.1 bits (61), Expect = 8.2
Identities = 30/327 (9%), Positives = 75/327 (22%), Gaps = 14/327 (4%)
Query: 803 GDFRLGIRLAAESNSSVLKNECADILQQFNK----LNDAVTLYESAGNYEKAATCYIQ-L 857
G L R + + C + +Q L +++ +++A +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 858 KNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 917
K + + ++ + + + + + + +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 918 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL-ILSKCYQDAFNLSQQHKKLHEFGK 976
+ + + +D N G K + N + L
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 977 FLLEEDEPNPVELKRLAIHFEEDKDMFRAAQYYYHAKEYGRAMKLLLVTARQDKDSDENL 1036
E K + + A+ + RA+ L +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 1037 W-LGVSIVSDSHDEKLVETFKTLLEGKLDGVKRNPKFLY---RVLMNTGDYVAASSCALD 1092
L + ++T++ +E + P L G A C
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 1093 VARDEAARGSYRNCHETLYSTIQELKK 1119
R N + +++
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEE 323
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 26.8 bits (58), Expect = 8.8
Identities = 14/125 (11%), Positives = 34/125 (27%), Gaps = 24/125 (19%)
Query: 822 NECADILQQFNKLNDAVTLYESAGNYEK--AATCYIQLKNWTKIGQLLPHIKSATTFIQY 879
E + + + A+ Y+ A + Q + + G + I+
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 880 ------------------AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD 921
+ Y++++ Y ++ D L + A
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR----TPDVLKKCQQAEK 123
Query: 922 IVKAK 926
I+K +
Sbjct: 124 ILKEQ 128
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 27.9 bits (60), Expect = 9.6
Identities = 20/176 (11%), Positives = 53/176 (30%), Gaps = 24/176 (13%)
Query: 18 YVCWQRRTGELLATTGRDSSVSIYN-KHGKLIDKITLPGLCIVMDWDSEGDLLGIISSNS 76
V + + + D ++ ++N + + + I + ++ S N+
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 199
Query: 77 SAVNVWNTYTKKRTIVDSGLRDPLTCLVWCKQCSMLQLSVSIYNKHGKLIDKITLPGLCI 136
+ +W+ V G LV C + ++ Y+ K+ D + +
Sbjct: 200 --IRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSGAYDGKIKVWDLVA----AL 249
Query: 137 VMDWDSEGDLLGIISSNSSAVNVWTLLTYTLGERISWSDDGQLLAVTTSGGSVKIY 192
+ L + +S V D + ++ ++ I+
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVF-------------RLQFDEFQIVSSSHDDTILIW 292
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,898,331
Number of extensions: 232509
Number of successful extensions: 750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 56
Length of query: 1324
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1228
Effective length of database: 1,089,516
Effective search space: 1337925648
Effective search space used: 1337925648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.5 bits)