Query psy12370
Match_columns 96
No_of_seqs 122 out of 1145
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:26:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.5 7.9E-14 1.7E-18 83.6 6.8 51 40-94 1-51 (110)
2 cd00041 CUB CUB domain; extrac 99.4 1.4E-12 3.1E-17 78.3 6.4 51 40-93 1-51 (113)
3 smart00042 CUB Domain first fo 99.4 3E-12 6.5E-17 76.1 6.2 42 53-94 1-42 (102)
4 KOG4292|consensus 98.5 2.3E-07 5E-12 68.4 5.4 52 37-92 289-340 (454)
5 KOG4586|consensus 98.1 6.9E-06 1.5E-10 51.7 5.1 43 51-93 48-91 (156)
6 KOG4292|consensus 97.2 0.00027 5.8E-09 52.5 2.8 43 51-93 177-219 (454)
7 PF02408 CUB_2: CUB-like domai 93.2 0.2 4.4E-06 30.8 4.1 25 63-87 37-61 (120)
8 PF12662 cEGF: Complement Clr- 38.6 15 0.00032 16.3 0.5 12 7-18 1-13 (24)
9 PF10572 UPF0556: Uncharacteri 34.7 1.3E+02 0.0029 19.7 5.1 53 36-92 44-96 (158)
10 PF05428 CRF-BP: Corticotropin 33.3 1E+02 0.0023 22.4 4.3 28 65-92 76-103 (311)
11 PF02910 Succ_DH_flav_C: Fumar 33.1 99 0.0021 19.0 3.8 43 52-94 78-120 (129)
12 smart00166 UBX Domain present 30.9 1E+02 0.0022 17.1 3.4 20 68-87 3-22 (80)
13 PF14670 FXa_inhibition: Coagu 29.1 46 0.00099 16.0 1.4 14 5-18 16-30 (36)
14 PF01186 Lysyl_oxidase: Lysyl 26.8 36 0.00079 23.2 1.1 31 56-86 135-168 (205)
15 PF02843 GARS_C: Phosphoribosy 26.1 48 0.001 19.4 1.4 14 54-67 6-19 (93)
16 KOG2689|consensus 24.8 1.3E+02 0.0028 21.6 3.6 21 67-87 208-228 (290)
17 PRK09678 DNA-binding transcrip 22.4 1.4E+02 0.0031 16.8 2.9 34 33-67 28-61 (72)
18 PF11454 DUF3016: Protein of u 21.8 1.1E+02 0.0023 19.6 2.5 19 76-94 47-65 (141)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.50 E-value=7.9e-14 Score=83.58 Aligned_cols=51 Identities=33% Similarity=0.741 Sum_probs=44.4
Q ss_pred CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
|++.+... .|.|.||+||..|+.+..|.|.|+++++++|.|+|..|+|+..
T Consensus 1 Cg~~~~~~----~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~ 51 (110)
T PF00431_consen 1 CGGRLTNN----SGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESS 51 (110)
T ss_dssp SEEEECSS----EEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--T
T ss_pred CcCEEECC----eEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceee
Confidence 78887777 9999999999999999999999999999999999999999854
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.39 E-value=1.4e-12 Score=78.32 Aligned_cols=51 Identities=35% Similarity=0.749 Sum_probs=45.8
Q ss_pred CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeec
Q psy12370 40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93 (96)
Q Consensus 40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~ 93 (96)
|++.+... ..|.|.||+||..|+++.+|.|.|+++++.+|.|.|.+|+++.
T Consensus 1 C~~~~~~~---~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~ 51 (113)
T cd00041 1 CGGTLTAS---TSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES 51 (113)
T ss_pred CCCEEccC---CCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc
Confidence 67776653 4899999999999999999999999999999999999999973
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.35 E-value=3e-12 Score=76.11 Aligned_cols=42 Identities=40% Similarity=0.778 Sum_probs=39.7
Q ss_pred eEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 53 g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
|.|.||+||..||++..|.|.|+++++.+|.|+|.+|+|+..
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~ 42 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESS 42 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCC
Confidence 689999999999999999999999999999999999999754
No 4
>KOG4292|consensus
Probab=98.50 E-value=2.3e-07 Score=68.35 Aligned_cols=52 Identities=23% Similarity=0.552 Sum_probs=46.7
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
-..|+.+++.. .|.+.||+||..|+++..|+|++.++.++.|.|.|+.+-++
T Consensus 289 ~~~C~~~~~~~----~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~ 340 (454)
T KOG4292|consen 289 ISDCNRTYHGK----FGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIE 340 (454)
T ss_pred ccccccceecc----eeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccch
Confidence 46799888877 89999999999999999999999999999999988776554
No 5
>KOG4586|consensus
Probab=98.13 E-value=6.9e-06 Score=51.73 Aligned_cols=43 Identities=33% Similarity=0.686 Sum_probs=39.2
Q ss_pred eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEE-eEEEeec
Q psy12370 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDVEG 93 (96)
Q Consensus 51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f-~~f~le~ 93 (96)
+.+.++||+||..||++.+|...|.+..-+-|.+.| +.|.||+
T Consensus 48 n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEp 91 (156)
T KOG4586|consen 48 NFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEP 91 (156)
T ss_pred ccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecc
Confidence 478899999999999999999999999999999999 5678875
No 6
>KOG4292|consensus
Probab=97.21 E-value=0.00027 Score=52.48 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=39.4
Q ss_pred eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeec
Q psy12370 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93 (96)
Q Consensus 51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~ 93 (96)
..|.+.+|+||-.|.++.-|.|.|.+++++++.|++..+++..
T Consensus 177 ~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~p 219 (454)
T KOG4292|consen 177 NSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAP 219 (454)
T ss_pred ccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCc
Confidence 4599999999999999999999999999999999999887653
No 7
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=93.17 E-value=0.2 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCCCCceeEEEEEeCCCCEEEEEEe
Q psy12370 63 LYPRDTECHYFFYGRNDERIKLVFE 87 (96)
Q Consensus 63 ~yp~~~~C~w~I~~~~g~~I~L~f~ 87 (96)
.+|.+..|.|.|.+|.|.-++|.+.
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~ 61 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLS 61 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEE
Confidence 4788889999999999999988774
No 8
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=38.55 E-value=15 Score=16.29 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.3
Q ss_pred eEEec-CCCeEEE
Q psy12370 7 AQRCS-ANGFLLV 18 (96)
Q Consensus 7 ~~~c~-~~g~~~~ 18 (96)
+|.|+ ..||.+.
T Consensus 1 sy~C~C~~Gy~l~ 13 (24)
T PF12662_consen 1 SYTCSCPPGYQLS 13 (24)
T ss_pred CEEeeCCCCCcCC
Confidence 47788 7888886
No 9
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=34.72 E-value=1.3e+02 Score=19.66 Aligned_cols=53 Identities=19% Similarity=0.389 Sum_probs=34.2
Q ss_pred ccCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 36 SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 36 ~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
....|..++...|+.++.+..+.+-... ...-.|. |-.|++ .=.|.|.+|.++
T Consensus 44 ~~~~C~FTYAaqGGTNEqW~msi~~s~d-~~~~sC~--I~RPqg-kSYL~F~qFkae 96 (158)
T PF10572_consen 44 GKYKCTFTYAAQGGTNEQWQMSIGLSDD-NGHYSCI--IWRPQG-KSYLFFTQFKAE 96 (158)
T ss_pred CceEEEEEEEecCCccceEEEEeeecCC-CCceEEE--EECCCC-CcEEEEEEEEEE
Confidence 3567988888886666666556554311 1122355 667776 677889999886
No 10
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=33.26 E-value=1e+02 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=25.3
Q ss_pred CCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 65 PRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 65 p~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
.+...|--++.+.+...|.+.|..+++.
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid 103 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID 103 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc
Confidence 4578999999999999999999999985
No 11
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=33.15 E-value=99 Score=18.96 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=28.9
Q ss_pred eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
.|.-....||..-+.+-.+...+....+..+.+.+..+.+..-
T Consensus 78 RG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~pv~~~~~ 120 (129)
T PF02910_consen 78 RGAHYREDYPERDDENWLKHIIVRLDGGGEMRISYEPVPFTDI 120 (129)
T ss_dssp BTTBEBTTSSSCETTTCSEEEEEEEETTTEEEEEEEE--GSCS
T ss_pred cccchhccccccccccccEEEEEEEcCCCceEEEEecCCCccC
Confidence 4555566788765666678888877666678888888777643
No 12
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=30.92 E-value=1e+02 Score=17.11 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.1
Q ss_pred ceeEEEEEeCCCCEEEEEEe
Q psy12370 68 TECHYFFYGRNDERIKLVFE 87 (96)
Q Consensus 68 ~~C~w~I~~~~g~~I~L~f~ 87 (96)
..|.=.|+-|+|.++...|.
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~ 22 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFP 22 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeC
Confidence 45888899999999998885
No 13
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=29.14 E-value=46 Score=16.04 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=10.7
Q ss_pred cceEEec-CCCeEEE
Q psy12370 5 LNAQRCS-ANGFLLV 18 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~ 18 (96)
-+.++|+ ..||.|.
T Consensus 16 ~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 16 PGSYRCSCPPGYKLA 30 (36)
T ss_dssp TTSEEEE-STTEEE-
T ss_pred CCceEeECCCCCEEC
Confidence 3578898 8999997
No 14
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=26.83 E-value=36 Score=23.19 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=22.7
Q ss_pred ECCCCCCCCCCCceeEEEE--EeCCCC-EEEEEE
Q psy12370 56 TSPNFPGLYPRDTECHYFF--YGRNDE-RIKLVF 86 (96)
Q Consensus 56 ~SP~yP~~yp~~~~C~w~I--~~~~g~-~I~L~f 86 (96)
.|||+-..|.....|+|+= .+++|. .+++..
T Consensus 135 IS~Gc~DtY~~~idcQWiDITdvp~G~Y~l~V~v 168 (205)
T PF01186_consen 135 ISPGCGDTYRHDIDCQWIDITDVPPGTYILQVTV 168 (205)
T ss_pred ccCCccccccCCCCccceeecCCCCccEEEEEec
Confidence 5999999999999999983 345544 344433
No 15
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=26.06 E-value=48 Score=19.36 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=9.6
Q ss_pred EEECCCCCCCCCCC
Q psy12370 54 TFTSPNFPGLYPRD 67 (96)
Q Consensus 54 ~i~SP~yP~~yp~~ 67 (96)
.+.|++||..|..+
T Consensus 6 v~as~GYP~~~~~g 19 (93)
T PF02843_consen 6 VLASKGYPGSYEKG 19 (93)
T ss_dssp EEEETTTTSS--SS
T ss_pred EEeCCCcCCCCCCC
Confidence 56899999988654
No 16
>KOG2689|consensus
Probab=24.78 E-value=1.3e+02 Score=21.61 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=19.0
Q ss_pred CceeEEEEEeCCCCEEEEEEe
Q psy12370 67 DTECHYFFYGRNDERIKLVFE 87 (96)
Q Consensus 67 ~~~C~w~I~~~~g~~I~L~f~ 87 (96)
...|+-.|+-++|+.+..+|.
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~ 228 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFN 228 (290)
T ss_pred ccceEEEEEcCCCCeeeeecC
Confidence 578999999999999999884
No 17
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=22.42 E-value=1.4e+02 Score=16.76 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=23.6
Q ss_pred cccccCCCCcEEecCCCceeeEEECCCCCCCCCCC
Q psy12370 33 HQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRD 67 (96)
Q Consensus 33 ~~~~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~ 67 (96)
..+.+..|+.+|... ..-...|..|.-|+.-++.
T Consensus 28 ~qC~N~eCg~tF~t~-es~s~tis~p~~~~~~~~~ 61 (72)
T PRK09678 28 HQCQNVNCSATFITY-ESVQRYIVKPGEVHAVRPH 61 (72)
T ss_pred eecCCCCCCCEEEEE-EEEEEEEcCCCCCCCCCCC
Confidence 345567899998775 4446788888877765544
No 18
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=21.76 E-value=1.1e+02 Score=19.64 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.3
Q ss_pred eCCCCEEEEEEeEEEeecC
Q psy12370 76 GRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 76 ~~~g~~I~L~f~~f~le~~ 94 (96)
-|+|+++.|.+.+.+|.+.
T Consensus 47 Lp~gq~L~v~VtDvDLAG~ 65 (141)
T PF11454_consen 47 LPPGQTLEVTVTDVDLAGD 65 (141)
T ss_pred CCCCCEEEEEEEecccCcc
Confidence 4789999999999999765
Done!