Query psy12370
Match_columns 96
No_of_seqs 122 out of 1145
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:26:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wno_A Tumor necrosis factor-i 99.6 8.5E-16 2.9E-20 97.5 8.3 54 37-94 4-57 (149)
2 3poj_A Mannan-binding lectin s 99.6 6.8E-16 2.3E-20 93.6 4.6 53 38-94 2-56 (115)
3 1nt0_A MAsp2, mannose-binding 99.6 5.1E-15 1.8E-19 102.1 7.0 74 5-94 141-217 (286)
4 3dem_A Complement factor MAsp- 99.6 6.7E-15 2.3E-19 100.8 6.7 74 5-94 142-218 (278)
5 1szb_A Mannose binding lectin- 99.5 3.3E-14 1.1E-18 91.5 6.8 44 51-94 11-54 (170)
6 1nzi_A Complement C1S componen 99.5 4.3E-14 1.5E-18 89.8 6.8 44 51-94 4-47 (159)
7 2qqo_A Neuropilin-2; VEGF rece 99.5 1.4E-13 4.8E-18 100.3 8.0 53 38-94 6-58 (460)
8 2qqm_A Neuropilin-1; VEGF rece 99.5 9.6E-14 3.3E-18 100.9 7.0 54 37-94 8-61 (450)
9 4aqb_A Mannan-binding lectin s 99.4 2.7E-13 9.4E-18 95.7 7.5 43 52-94 9-51 (361)
10 2qqk_A Neuropilin-2; VEGF rece 99.4 8.8E-13 3E-17 98.3 10.5 53 38-94 125-177 (579)
11 3dem_A Complement factor MAsp- 99.4 5.5E-13 1.9E-17 91.2 6.8 43 52-94 9-51 (278)
12 4gz9_A Neuropilin-1, A5 protei 99.4 9.2E-13 3.2E-17 98.5 7.6 53 38-94 127-179 (577)
13 4aqb_A Mannan-binding lectin s 99.4 1E-12 3.6E-17 92.7 7.4 74 5-93 142-217 (361)
14 1nt0_A MAsp2, mannose-binding 99.4 1.4E-12 4.8E-17 89.8 6.8 43 52-94 8-50 (286)
15 3kq4_B Cubilin; protein-protei 99.3 1.6E-12 5.4E-17 94.4 6.9 54 37-94 231-284 (457)
16 1spp_A Major seminal plasma gl 99.3 3.8E-12 1.3E-16 76.6 7.4 47 37-92 3-49 (109)
17 3kq4_B Cubilin; protein-protei 99.3 4.9E-13 1.7E-17 97.1 3.5 51 40-94 1-51 (457)
18 1sfp_A ASFP; spermadhesin, bov 99.3 7.6E-12 2.6E-16 75.7 7.1 48 36-92 6-53 (114)
19 1spp_B Major seminal plasma gl 99.3 6.5E-12 2.2E-16 76.3 6.8 47 37-92 6-52 (116)
20 4gz9_A Neuropilin-1, A5 protei 99.3 5.2E-12 1.8E-16 94.4 5.7 53 38-93 7-61 (577)
21 2qqk_A Neuropilin-2; VEGF rece 99.2 1.5E-11 5E-16 91.8 6.1 54 37-93 3-58 (579)
22 2jkh_L Factor X light chain; p 25.2 38 0.0013 16.7 1.6 14 5-18 19-33 (55)
23 1apq_A Complement protease C1R 23.4 43 0.0015 16.0 1.6 14 5-18 30-44 (53)
24 1kig_L Factor XA; glycoprotein 21.2 42 0.0015 16.3 1.3 14 5-18 16-30 (51)
No 1
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=97.51 Aligned_cols=54 Identities=30% Similarity=0.566 Sum_probs=50.5
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
...|++.+... .|.|.||+||..||++.+|.|.|+++.+++|.|+|.+|+||..
T Consensus 4 ~~~Cgg~l~~~----~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~ 57 (149)
T 2wno_A 4 AKECGGVFTDP----KQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD 57 (149)
T ss_dssp CSCCCEEECSS----EEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred CCCCCCEEECC----ceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 45799999887 8999999999999999999999999999999999999999863
No 2
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.60 E-value=6.8e-16 Score=93.59 Aligned_cols=53 Identities=34% Similarity=0.667 Sum_probs=47.4
Q ss_pred CCCCcEE-ecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEe-EEEeecC
Q psy12370 38 LPCAFMF-NSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDVEGV 94 (96)
Q Consensus 38 ~~C~~~~-~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~-~f~le~~ 94 (96)
..|++.+ ... .|.|.||+||..||++.+|.|.|+++++++|.|+|. .|+||..
T Consensus 2 ~~Cgg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~ 56 (115)
T 3poj_A 2 VECSGNLFTQR----TGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH 56 (115)
T ss_dssp -CEEEEEECSS----EEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC
T ss_pred eECCCceEcCC----CEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC
Confidence 4688885 555 899999999999999999999999999999999999 5999864
No 3
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.57 E-value=5.1e-15 Score=102.05 Aligned_cols=74 Identities=32% Similarity=0.561 Sum_probs=60.3
Q ss_pred cceEEec-CCCeEEEcceeeecccccccccccccCCCCcE-EecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEE
Q psy12370 5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFM-FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERI 82 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~-~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I 82 (96)
++.+.|+ ..||.+.. .... ....|++. +... .|.|.||+||..||++..|.|.|++++|++|
T Consensus 141 ~g~~~csC~~Gy~L~~-----------d~~~-C~~~Cg~~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I 204 (286)
T 1nt0_A 141 LGGYYCSCRVGYILHQ-----------NKHT-CSALCSGQVFTGR----SGFLSSPEYPQPYPKLSSCAYNIRLEEGFSI 204 (286)
T ss_dssp TTEEEEECCTTEEECT-----------TSSC-EEECCEEEEECSS----SEEEECTTTTSCCCSSCEEEEEEECCSSCEE
T ss_pred cCceEeecCCCceecc-----------CCCC-ccccccCceecCC----ceEEeCCCCCCCCCCCCEEEEEEECCCceEE
Confidence 4567777 78888872 2222 24579987 5655 8999999999999999999999999999999
Q ss_pred EEEEe-EEEeecC
Q psy12370 83 KLVFE-SFDVEGV 94 (96)
Q Consensus 83 ~L~f~-~f~le~~ 94 (96)
.|+|. +|+||..
T Consensus 205 ~l~f~~~f~le~~ 217 (286)
T 1nt0_A 205 TLDFVESFDVEMH 217 (286)
T ss_dssp EEEECSCCBBCCC
T ss_pred EEEEeceEEeccC
Confidence 99995 8999864
No 4
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=100.81 Aligned_cols=74 Identities=30% Similarity=0.613 Sum_probs=59.7
Q ss_pred cceEEec-CCCeEEEcceeeecccccccccccccCCCCcEE-ecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEE
Q psy12370 5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFMF-NSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERI 82 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~~-~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I 82 (96)
++++.|+ +.||.++. .... ....|++.+ ... .|.|.||+||..||++..|.|.|+++.+++|
T Consensus 142 ~g~~~C~C~~Gy~l~~-----------d~~~-C~~~Cgg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i 205 (278)
T 3dem_A 142 IGGYYCSCRFGYILHT-----------DNRT-CRVECSDNLFTQR----TGVITSPDFPNPYPKSSECLYTIELEEGFMV 205 (278)
T ss_dssp TTEEEEECCTTCEECT-----------TSSC-EECCCCCCCBCSS----EEEEESTTTTSCCCSSCEEEEEEECCTTCCE
T ss_pred cCCcEEEeCCcceecc-----------CCCC-CcccCCCceecCC----ccceeCCCCCCCCCCcCeEEEEEEeCCCcEE
Confidence 4567777 77888762 2222 346788753 555 8999999999999999999999999999999
Q ss_pred EEEEeE-EEeecC
Q psy12370 83 KLVFES-FDVEGV 94 (96)
Q Consensus 83 ~L~f~~-f~le~~ 94 (96)
.|+|.+ |+||..
T Consensus 206 ~l~f~~~f~le~~ 218 (278)
T 3dem_A 206 NLQFEDIFDIEDH 218 (278)
T ss_dssp EEEECSCCBBCCC
T ss_pred EEEEccccccccC
Confidence 999997 999864
No 5
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.51 E-value=3.3e-14 Score=91.45 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=41.9
Q ss_pred eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
..|.|.||+||..||++.+|.|.|+++.+++|.|+|.+|+||..
T Consensus 11 ~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 54 (170)
T 1szb_A 11 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS 54 (170)
T ss_dssp CEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred CCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC
Confidence 38999999999999999999999999999999999999999864
No 6
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.50 E-value=4.3e-14 Score=89.75 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=41.9
Q ss_pred eeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 51 ~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
..|.|.||+||..||++..|.|.|+++.+++|.|+|.+|+||..
T Consensus 4 ~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 47 (159)
T 1nzi_A 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS 47 (159)
T ss_dssp SEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred CCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCC
Confidence 48999999999999999999999999999999999999999864
No 7
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=100.28 Aligned_cols=53 Identities=36% Similarity=0.658 Sum_probs=49.6
Q ss_pred CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
..|++.+... .|.|.||+||..||++..|.|.|++++|++|.|.|.+|+||..
T Consensus 6 ~~Cg~~l~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~ 58 (460)
T 2qqo_A 6 EDCSKNFTSP----NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD 58 (460)
T ss_dssp -CCCEEECSS----EEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred CCCCCEEeCC----ceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccc
Confidence 4699999887 8999999999999999999999999999999999999999864
No 8
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.46 E-value=9.6e-14 Score=100.87 Aligned_cols=54 Identities=35% Similarity=0.698 Sum_probs=50.3
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
...|++.+... .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||..
T Consensus 8 ~~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 61 (450)
T 2qqm_A 8 GPECSQNYTTP----SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD 61 (450)
T ss_dssp -CTTCEEECSS----EEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred CCCCCCeEeCC----cEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec
Confidence 45799999887 8999999999999999999999999999999999999999864
No 9
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=95.72 Aligned_cols=43 Identities=35% Similarity=0.605 Sum_probs=41.6
Q ss_pred eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
.|.|.||+||++||++.+|.|.|++++|++|.|+|.+|+||..
T Consensus 9 ~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~ 51 (361)
T 4aqb_A 9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS 51 (361)
T ss_dssp EEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred eEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCC
Confidence 8999999999999999999999999999999999999999864
No 10
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.43 E-value=8.8e-13 Score=98.33 Aligned_cols=53 Identities=36% Similarity=0.658 Sum_probs=47.8
Q ss_pred CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
..|++.+... .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus 125 ~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~ 177 (579)
T 2qqk_A 125 EDCSKNFTSP----NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD 177 (579)
T ss_dssp CCCCCEECCS----EEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC---
T ss_pred ccccceeccC----CceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecc
Confidence 4599999887 9999999999999999999999999999999999999999864
No 11
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.40 E-value=5.5e-13 Score=91.25 Aligned_cols=43 Identities=35% Similarity=0.605 Sum_probs=41.5
Q ss_pred eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
.|.|.||+||..||++..|.|.|+++++++|.|+|.+|+||..
T Consensus 9 ~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~ 51 (278)
T 3dem_A 9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS 51 (278)
T ss_dssp EEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred CceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC
Confidence 8999999999999999999999999999999999999999863
No 12
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.38 E-value=9.2e-13 Score=98.50 Aligned_cols=53 Identities=36% Similarity=0.720 Sum_probs=49.3
Q ss_pred CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
..|++.+... .|.|.||+||..||++.+|.|.|.+++|++|.|.|.+|+||..
T Consensus 127 ~~C~~~~~~~----~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~ 179 (577)
T 4gz9_A 127 PECSQNYTAP----TGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQD 179 (577)
T ss_dssp CEEEEEECSS----EEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred cccceeecCC----CccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeec
Confidence 3588888887 9999999999999999999999999999999999999999854
No 13
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=92.74 Aligned_cols=74 Identities=30% Similarity=0.566 Sum_probs=57.4
Q ss_pred cceEEec-CCCeEEEcceeeecccccccccccccCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEE
Q psy12370 5 LNAQRCS-ANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIK 83 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~~~~~f~~~~~~~~~~~~~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~ 83 (96)
.+.+.|+ ..|+.+. ..........|++.+... .|.|.||+||.+||++.+|.|.|.++.|++|.
T Consensus 142 ~g~~~csC~~g~~l~-----------~~~~~~~~~~c~~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~ 206 (361)
T 4aqb_A 142 IGGYYCSCRFGYILH-----------TDNRTCRVECSDNLFTQR----TGVITSPDFPNPYPKSSECLYTIELEEGFMVN 206 (361)
T ss_dssp TTEEEEECCTTCEEC-----------TTSSCEECCCCCCCBCSS----EEEEESTTTTSCCCSSCEEEEEEECCTTCEEE
T ss_pred CCCceeccCCCeEEe-----------ccccccccccccceEeCC----CcEEecCCCCCCCCCCceeeEEeeeccCcEEE
Confidence 3455666 5666665 223333445677777776 99999999999999999999999999999999
Q ss_pred EEEeE-EEeec
Q psy12370 84 LVFES-FDVEG 93 (96)
Q Consensus 84 L~f~~-f~le~ 93 (96)
|+|.+ |++|.
T Consensus 207 l~f~~~~~~e~ 217 (361)
T 4aqb_A 207 LQFEDIFDIED 217 (361)
T ss_dssp EEECSCCBBCC
T ss_pred EEEeecccccC
Confidence 99976 56654
No 14
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.36 E-value=1.4e-12 Score=89.84 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=41.5
Q ss_pred eeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 52 ~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
.|.|.||+||..||++..|.|.|++++|++|.|.|.+|+||..
T Consensus 8 ~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~ 50 (286)
T 1nt0_A 8 FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS 50 (286)
T ss_dssp EEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred CceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCC
Confidence 8999999999999999999999999999999999999999863
No 15
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=94.42 Aligned_cols=54 Identities=28% Similarity=0.591 Sum_probs=50.4
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
...|++.+... .|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||..
T Consensus 231 ~~~Cg~~~~~~----~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~ 284 (457)
T 3kq4_B 231 STGCGGNLTTS----SGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH 284 (457)
T ss_dssp CCCCEECCCSS----EEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCC
T ss_pred cCCCCCeEccC----cceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCC
Confidence 46799998877 9999999999999999999999999999999999999999863
No 16
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.34 E-value=3.8e-12 Score=76.59 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=43.2
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
...|++.+... .|.|.|| ||++.+|.|.|++++|++|.|+|.+|+++
T Consensus 3 ~~~Cgg~l~~~----~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~ 49 (109)
T 1spp_A 3 YHACGGRLTDD----YGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT 49 (109)
T ss_dssp ECSSCEEEECS----EEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC
T ss_pred ccCCCCEEeCC----cEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc
Confidence 35799999987 8999998 88999999999999999999999999985
No 17
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.33 E-value=4.9e-13 Score=97.10 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=48.3
Q ss_pred CCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEeecC
Q psy12370 40 CAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGV 94 (96)
Q Consensus 40 C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le~~ 94 (96)
|++.+... .|.|.||+||+.||++.+|.|.|++++|++|.|+|.+|+||..
T Consensus 1 CGg~l~~~----~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~ 51 (457)
T 3kq4_B 1 CGEILTES----TGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH 51 (457)
T ss_dssp CCCEECSS----EEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCC
T ss_pred CCCeEecC----CEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccC
Confidence 88988877 9999999999999999999999999999999999999999853
No 18
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.30 E-value=7.6e-12 Score=75.71 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=43.6
Q ss_pred ccCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 36 SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 36 ~~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
....|++.+... .|.|.|| ||++.+|.|.|++++|++|.|+|.+|+|+
T Consensus 6 ~~~~Cgg~l~~~----~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l~ 53 (114)
T 1sfp_A 6 RNTNCGGILKEE----SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53 (114)
T ss_dssp EECSSCEEECCS----EEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred cCCCCCCeEECC----cEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeeee
Confidence 356899999887 8999997 78899999999999999999999999985
No 19
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.30 E-value=6.5e-12 Score=76.28 Aligned_cols=47 Identities=11% Similarity=0.381 Sum_probs=43.3
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCCCEEEEEEeEEEee
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g~~I~L~f~~f~le 92 (96)
...|++.+... .|.|.|| ||++.+|.|.|++++|++|.|+|.+|+|+
T Consensus 6 ~~~Cgg~l~~~----~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~ 52 (116)
T 1spp_B 6 PDECGRVIKDT----SGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA 52 (116)
T ss_dssp GGGTTEEECCS----EEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred CCCCCCEEeCC----ceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence 45799999887 8999998 88899999999999999999999999985
No 20
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.26 E-value=5.2e-12 Score=94.42 Aligned_cols=53 Identities=26% Similarity=0.557 Sum_probs=46.4
Q ss_pred CCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCCC-CEEEEEEe-EEEeec
Q psy12370 38 LPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFE-SFDVEG 93 (96)
Q Consensus 38 ~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~g-~~I~L~f~-~f~le~ 93 (96)
..||+.+... ..|.|.||+||..||++.+|.|.|+++.+ ++|.|.|. .|+||.
T Consensus 7 ~~CGg~l~~~---~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~ 61 (577)
T 4gz9_A 7 DKCGGTIKIE---NPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED 61 (577)
T ss_dssp CCSSEEEECS---SCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC
T ss_pred CCCCCEEEcC---CCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC
Confidence 4699998864 36999999999999999999999999876 68999996 788874
No 21
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.22 E-value=1.5e-11 Score=91.78 Aligned_cols=54 Identities=33% Similarity=0.755 Sum_probs=46.9
Q ss_pred cCCCCcEEecCCCceeeEEECCCCCCCCCCCceeEEEEEeCC-CCEEEEEEe-EEEeec
Q psy12370 37 ELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRN-DERIKLVFE-SFDVEG 93 (96)
Q Consensus 37 ~~~C~~~~~~~~~~~~g~i~SP~yP~~yp~~~~C~w~I~~~~-g~~I~L~f~-~f~le~ 93 (96)
...|++.+... ..|.|.||+||..||++..|.|.|.++. +++|.|.|. +|+||.
T Consensus 3 ~~~Cgg~~~~~---~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~ 58 (579)
T 2qqk_A 3 DPPCGGRLNSK---DAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK 58 (579)
T ss_dssp --CCCEEEETT---SCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC
T ss_pred CCCCCCEEEeC---CCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc
Confidence 45799999862 2799999999999999999999999996 679999999 899985
No 22
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=25.24 E-value=38 Score=16.70 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.5
Q ss_pred cceEEec-CCCeEEE
Q psy12370 5 LNAQRCS-ANGFLLV 18 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~ 18 (96)
.++|+|+ ..||.|.
T Consensus 19 ~Gsy~C~C~~Gy~L~ 33 (55)
T 2jkh_L 19 QNSVVCSCARGYTLA 33 (55)
T ss_dssp TTEEEEECCTTEEEC
T ss_pred CCCeEEeCCCCCEEC
Confidence 4678898 8899886
No 23
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=23.44 E-value=43 Score=15.96 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.3
Q ss_pred cceEEec-CCCeEEE
Q psy12370 5 LNAQRCS-ANGFLLV 18 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~ 18 (96)
.++|+|+ ..||.+.
T Consensus 30 ~Gsy~C~C~~Gy~~~ 44 (53)
T 1apq_A 30 VGGYFCSCRPGYELQ 44 (53)
T ss_dssp TTEEEEECSTTCEEC
T ss_pred CCCeEEECCCCCeEC
Confidence 4677887 7788775
No 24
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=21.15 E-value=42 Score=16.31 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=11.7
Q ss_pred cceEEec-CCCeEEE
Q psy12370 5 LNAQRCS-ANGFLLV 18 (96)
Q Consensus 5 ~~~~~c~-~~g~~~~ 18 (96)
.++|+|+ ..||.|.
T Consensus 16 ~gs~~C~C~~Gy~L~ 30 (51)
T 1kig_L 16 RSEVRCSCAHGYVLG 30 (51)
T ss_dssp TTEECCCCCTTEEEC
T ss_pred CCCeEEeCCCCcEEC
Confidence 4788998 8999986
Done!