RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12370
         (96 letters)



>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
          morphogenetic protein.  This domain is found mostly
          among developmentally-regulated proteins. Spermadhesins
          contain only this domain.
          Length = 102

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
          GT TSPN+P  YP + +C +        RI+L F  FD+E 
Sbjct: 1  GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLES 41


>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in
          proteins mostly known to be involved in development;
          not found in prokaryotes, plants and yeast.
          Length = 113

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 49 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
             +GT +SPN+P  YP +  C +        RI+L FE FD+E 
Sbjct: 7  ASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES 51


>gnl|CDD|215916 pfam00431, CUB, CUB domain. 
          Length = 110

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
          +G+ TSPN+P  YP + +C +        RI L F+ FD+E 
Sbjct: 9  SGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLED 50


>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus.  This
          family represents the C-terminal, catalytic domain of
          the D-alanine--D-alanine ligase enzyme EC:6.3.2.4.
          D-Alanine is one of the central molecules of the
          cross-linking step of peptidoglycan assembly. There are
          three enzymes involved in the D-alanine branch of
          peptidoglycan biosynthesis: the pyridoxal
          phosphate-dependent D-alanine racemase (Alr), the
          ATP-dependent D-alanine:D-alanine ligase (Ddl), and the
          ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
          Length = 201

 Score = 28.4 bits (64), Expect = 0.40
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 7  AQRCSANGF-LLVKPSLLGTNFGINTGHQLSELPC----AFMFNST 47
           +     G+ + VKP+ LG++ GI+      EL      AF +++ 
Sbjct: 26 EKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQYDNK 71


>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
           production and conversion].
          Length = 608

 Score = 27.7 bits (62), Expect = 0.84
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 9/54 (16%)

Query: 50  HRNGTFTSP--NFPGLYPR-DTEC-----HYFFYGRNDERIKLVFESFDVE-GV 94
           H N  FT P    P L P  D           F GR    + LV E+FD E GV
Sbjct: 387 HPNSRFTVPLSQCPNLDPEWDDPEGVPIDAIIFGGRRPTTVPLVTEAFDWEHGV 440


>gnl|CDD|233813 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
           protein.  Members of this protein family contain a
           region of homology to the RimK family of
           alpha-L-glutamate ligases (TIGR00768), various members
           of which modify the Glu-Glu C-terminus of ribosomal
           protein S6, or tetrahydromethanopterin, or a form of
           coenzyme F420 derivative. Members of this family are
           found so far in various Vibrio and Pseudomonas species
           and some other gamma and beta Proteobacteria. The
           function is unknown.
          Length = 317

 Score = 27.5 bits (61), Expect = 0.96
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 15/62 (24%)

Query: 49  GHRNGTFTSPNFPGLYPRDTECH--------YFFYGRNDE-----RIKL--VFESFDVEG 93
             ++G +  P+   +   + E H        Y   G+ND      R+K    F+ F  EG
Sbjct: 96  SRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEG 155

Query: 94  VP 95
           VP
Sbjct: 156 VP 157


>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase.  catalyzes the
           formation of phosphoenolpyruvate by decarboxylation of
           oxaloacetate.
          Length = 586

 Score = 26.4 bits (59), Expect = 2.9
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 19/59 (32%)

Query: 50  HRNGTFTSP--NFPGLYPRDTECHY-----------FFYGRNDERIKLVFESFD-VEGV 94
           H N  FT+P    P L P      +            F GR  + + LV+E+FD   GV
Sbjct: 365 HPNSRFTAPLAQCPNLDPD-----WEDPEGVPISAIIFGGRRPDTVPLVYEAFDWEHGV 418


>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
          Length = 364

 Score = 25.9 bits (57), Expect = 3.8
 Identities = 8/23 (34%), Positives = 18/23 (78%)

Query: 16  LLVKPSLLGTNFGINTGHQLSEL 38
           ++VKP++LG++ GIN  +  +++
Sbjct: 174 VIVKPAVLGSSIGINVAYNENQI 196


>gnl|CDD|188999 cd06461, M2_ACE, Peptidase family M2 Angiotensin converting enzyme
           (ACE).  Peptidase family M2 Angiotensin converting
           enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc
           dependent dipeptidase that catalyzes the conversion of
           the decapeptide angiotensin I to the potent vasopressor
           octapeptide angiotensin II, by removing two C-terminal
           amino acids. There are two forms of the enzyme in
           humans, the ubiquitous somatic ACE and the
           sperm-specific germinal ACE, both encoded by the same
           gene through transcription from alternative promoters.
           Somatic ACE has two tandem active sites with distinct
           catalytic properties, whereas germinal ACE, the function
           of which is largely unknown, has just a single active
           site. Recently, an ACE homolog, ACE2, has been
           identified in humans that differs from ACE; it
           preferentially removes carboxy-terminal hydrophobic or
           basic amino acids and appears to be important in cardiac
           function. ACE homologs (also known as members of the M2
           gluzincin family) have been found in a wide variety of
           species, including those that neither have a
           cardiovascular system nor synthesize angiotensin. ACE is
           well-known as a key part of the renin-angiotensin system
           that regulates blood pressure and ACE inhibitors are
           important for the treatment of hypertension.
          Length = 562

 Score = 25.6 bits (57), Expect = 4.7
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 16/45 (35%)

Query: 55  FTSPNFPGLYP-------------RDTECH---YFFYGRNDERIK 83
           FTS   P + P             RD  CH   + FY R D RIK
Sbjct: 279 FTSLGLPPMPPSFWEKSMFEKPTDRDVVCHASAWDFYNRKDFRIK 323


>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
          component [General function prediction only].
          Length = 263

 Score = 25.4 bits (56), Expect = 6.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 1  MSTLLNAQRCSANGFLLVKPSLLGTNFGINTG 32
          M +L NA +    G  L K +L G +  I  G
Sbjct: 1  MISLSNATKTFFKGTPLEKRALNGLSLEIAEG 32


>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 699

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 3   TLLNAQRCS----ANGFLL-VKPSLLGTNFGINTGHQLSEL 38
           T LNA R       + FLL V  SL   NF  +T  QLS++
Sbjct: 154 TFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 194


>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
           acyl-CoA synthetase (MACS).  MACS catalyzes the two-step
           activation of medium chain fatty acids (containing 4-12
           carbons). The carboxylate substrate first reacts with
           ATP to form an acyl-adenylate intermediate, which then
           reacts with CoA to produce an acyl-CoA ester. MACS
           enzymes are localized to mitochondria.
          Length = 433

 Score = 25.0 bits (55), Expect = 7.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 66  RDTECHYFFYGRNDERIK 83
           RD + + +F GR D+  K
Sbjct: 318 RDEDGYLWFVGRADDVFK 335


>gnl|CDD|217540 pfam03408, Foamy_virus_ENV, Foamy virus envelope protein.
           Expression of the envelope (Env) glycoprotein is
           essential for viral particle egress. This feature is
           unique to the Spumavirinae, a subclass of the
           Retroviridae.
          Length = 985

 Score = 25.1 bits (55), Expect = 8.5
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 25  TNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHY 72
            NF   TG  ++E+P A  F           T P FP  YP  T+   
Sbjct: 520 KNFLNFTGTPVNEMPAARAFVG--------LTDPKFPPSYPNKTKEQR 559


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,829,508
Number of extensions: 385402
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 17
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)