RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12370
(96 letters)
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 57.6 bits (139), Expect = 1e-11
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
G SP +P YP D+E + + RIKL F F++E
Sbjct: 8 MFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES 50
Score = 50.3 bits (120), Expect = 6e-09
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDVEGVP 95
R G TSP+FP YP+ +EC Y + L FE FD+E P
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP 219
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 57.8 bits (139), Expect = 1e-11
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
NGT SP FP YP + +C + + I L F FD+E P
Sbjct: 16 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL 60
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 57.6 bits (139), Expect = 2e-11
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 30 NTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESF 89
+G + +GTF SPN+P Y +EC+++ + +L F+ F
Sbjct: 220 RSGFSAYWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDF 279
Query: 90 DVEGVP 95
+E P
Sbjct: 280 HLEHHP 285
Score = 55.7 bits (134), Expect = 7e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
GT SP P +YP C + + + I L+FE+F +E
Sbjct: 8 STGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLE 49
Score = 49.9 bits (119), Expect = 9e-09
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 43 MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
G S +P Y + C++ + F +FD+E
Sbjct: 348 ENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEH 398
Score = 48.7 bits (116), Expect = 2e-08
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 36 SELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
+ A GTFTSPNFP YP + EC Y R + I + F +F +E
Sbjct: 109 EAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEE 166
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 57.4 bits (138), Expect = 2e-11
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
+G SP FP YP EC Y + I L FESFD+E
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 56.5 bits (136), Expect = 3e-11
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
G SP FP Y + + R++L F F++E
Sbjct: 8 FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL 49
Score = 55.3 bits (133), Expect = 1e-10
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 30 NTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ES 88
HQ A R+G +SP +P YP+ + C Y I L F ES
Sbjct: 152 YILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVES 211
Query: 89 FDVEGVP 95
FDVE P
Sbjct: 212 FDVEMHP 218
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 54.4 bits (131), Expect = 6e-11
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
G SPN+P YP + E + I L F D+E
Sbjct: 5 YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE 45
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 55.8 bits (134), Expect = 7e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
G SP +P YP D+E + + RIKL F F++E
Sbjct: 9 FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES 50
Score = 49.2 bits (117), Expect = 1e-08
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDVEGVP 95
R G TSP+FP YP+ +EC Y + L FE FD+E P
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP 219
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein,
cell adhesion, extracellular matrix; 2.30A {Homo
sapiens}
Length = 149
Score = 53.5 bits (129), Expect = 9e-11
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVP 95
F SP FP Y + C++ + +RI L F FD+E P
Sbjct: 14 PKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDP 58
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 55.0 bits (132), Expect = 1e-10
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
NGT SP FP YP + +C + + I L F FD+E P
Sbjct: 135 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL 179
Score = 48.8 bits (116), Expect = 2e-08
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFESFDVE 92
G TSP +P YP C + Y ++I L F
Sbjct: 15 AGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEI 56
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 52.3 bits (126), Expect = 2e-10
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDVEGVP 95
R GT TSP++P YP+ +EC Y + L F + FD+E P
Sbjct: 12 RTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP 57
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 53.0 bits (127), Expect = 2e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVEG 93
G SP FPG Y D E + R++L F FD+E
Sbjct: 12 FGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLEL 53
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex
(seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP:
b.23.1.1
Length = 109
Score = 41.2 bits (97), Expect = 3e-06
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
GT + P TEC + ++ + + ++
Sbjct: 14 YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT 49
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 40.0 bits (94), Expect = 1e-05
Identities = 4/41 (9%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
+G + Y T C + + +++ + +
Sbjct: 18 SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma
proteins, spermadhesins, CUB domain architecture,
complex (seminal plasma protein/SPP); 2.40A {Sus
scrofa} SCOP: b.23.1.1
Length = 116
Score = 37.8 bits (88), Expect = 5e-05
Identities = 3/41 (7%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
+G+ ++ + C + + D+++++ ++
Sbjct: 17 SGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.063
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 11 SANGFLLVK-----PSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLYP 65
GF ++ P L +FG G ++ E A +F + + T F +
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK--LKTEKIFKEINE 1712
Query: 66 RDTECHYFFYGRNDE 80
T Y F
Sbjct: 1713 HSTS--YTFRSEKGL 1725
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase,
spout-class fold, transferas; HET: SAM; 1.40A
{Methanocaldococcus jannaschii} PDB: 3ai9_X*
Length = 211
Score = 26.9 bits (59), Expect = 0.85
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 66 RDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
RD + YG+ + + + F +++ V P
Sbjct: 54 RDVVFYAVLYGQPNPPVCIKFVGSELKKVSP 84
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP:
c.116.1.7
Length = 197
Score = 26.9 bits (59), Expect = 0.90
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 66 RDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
RD E + G ++ + +V + P
Sbjct: 49 RDVEVYLLLLGPPSPPKSILIKGDEVRRMSP 79
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics,
PSI- 2, protein structure initiative; 2.60A {Vibrio
cholerae o1 biovar eltor str} SCOP: c.116.1.7
Length = 208
Score = 25.7 bits (56), Expect = 2.2
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 66 RDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
D H D + E+ ++ V
Sbjct: 54 EDVVIHLVLESTRDYSRTITVEANEISDVGG 84
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 25.7 bits (56), Expect = 2.5
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 54 TFTSPNFPGLYPRDTECHYFFYGR 77
T+T+ +P P + G+
Sbjct: 346 TWTNKKWPHAAPEGKTLLRAYVGK 369
>2ila_A Interleukin-1 alpha; cytokine; 2.30A {Homo sapiens} SCOP: b.42.1.2
PDB: 2kki_A 2l5x_A
Length = 155
Score = 25.3 bits (55), Expect = 3.2
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 19 KPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPGLY 64
+P LL I SE F + + G FTS P L+
Sbjct: 84 QPVLLKEMPEIPKTITGSETNLLFFWETHGT--KNYFTSVAHPNLF 127
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 25.3 bits (55), Expect = 3.3
Identities = 4/24 (16%), Positives = 5/24 (20%)
Query: 54 TFTSPNFPGLYPRDTECHYFFYGR 77
S FP + G
Sbjct: 352 IHASTTFPFRAEGGRVLYSCMVGG 375
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 24.4 bits (53), Expect = 6.3
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 14/56 (25%)
Query: 53 GTFTSPNFPGLYPRDTECHY---FFYGR---------NDERIKLVFESFDVEGVPP 96
G F + Y E Y F + E +KL + F + PP
Sbjct: 81 GVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQY--FSLSEKPP 134
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S
ribosomal protein L3; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus} PDB: 3iy9_D
Length = 175
Score = 24.5 bits (54), Expect = 6.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 47 TGGHRNGTFTSPNFPG 62
TG R+G+ SP + G
Sbjct: 37 TGRARHGSIRSPLWRG 52
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail,
evolution, structur comparisons, virus-viral protein
complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Length = 602
Score = 24.4 bits (52), Expect = 8.1
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 18 VKPSLLGTNFGINTGHQLSELPCAFMFNSTGGHRNGTFTSPNFPG 62
+ NF +N S + TGG + T + N P
Sbjct: 490 WNEDISDPNFALNNNDLDSGGNPSHTAGGTGGSTSVTLENTNLPA 534
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking
interactions, TRIS inhibition, hydrolase, glycosidase;
1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A*
2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A*
Length = 240
Score = 24.3 bits (53), Expect = 8.1
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 71 HYFFYGRNDERIKLV 85
YG+ + R+K+
Sbjct: 13 EEVQYGKFEARMKMA 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.451
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,440,361
Number of extensions: 70240
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 33
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)