RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12370
(96 letters)
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 41.1 bits (95), Expect = 1e-06
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
G SP FP YP EC Y + I L FESFD+E
Sbjct: 1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 40
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 39.9 bits (92), Expect = 4e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDV 91
G SPN+P YP + E + I L F D+
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 39.5 bits (91), Expect = 6e-06
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 53 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDVE 92
G SP FPG Y D E + R++L F FD+E
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLE 50
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 114
Score = 36.8 bits (84), Expect = 5e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 51 RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF 86
R+G +SP +P YP+ + C Y I L F
Sbjct: 9 RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDF 44
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 28.8 bits (64), Expect = 0.081
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 1 MSTLLNAQRCSANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNSTGG 49
++ + + G VK + G+ L TGG
Sbjct: 114 VNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGG 162
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 194
Score = 27.8 bits (62), Expect = 0.14
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 66 RDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
RD E + G ++ + +V + P
Sbjct: 46 RDVEVYLLLLGPPSPPKSILIKGDEVRRMSP 76
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I
{Pig (Sus scrofa) [TaxId: 9823]}
Length = 109
Score = 25.7 bits (55), Expect = 0.64
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 44 FNSTGGH---RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 90
+++ GG GT + P TEC + ++ + + +
Sbjct: 3 YHACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLN 47
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 25.2 bits (54), Expect = 1.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 66 RDTECHYFFYGRNDERIKL 84
D + H+F R IK
Sbjct: 423 WDEDEHFFIVDRLKSLIKY 441
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II
{Pig (Sus scrofa) [TaxId: 9823]}
Length = 112
Score = 24.6 bits (52), Expect = 2.0
Identities = 3/38 (7%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESF 89
+G+ ++ + C + + D+++++
Sbjct: 17 SGSISNTDRQ-----KNLCTWTILMKPDQKVRMAIPYL 49
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),
cardiac isoform [TaxId: 9031]}
Length = 81
Score = 23.8 bits (51), Expect = 2.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 76 GRNDERIKLVFESFDVEG 93
G+ +E + +F FD
Sbjct: 11 GKTEEELSDLFRMFDKNA 28
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 23.3 bits (50), Expect = 3.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 76 GRNDERIKLVFESFDVEG 93
G+++E + F FD
Sbjct: 5 GKSEEELANCFRIFDKNA 22
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 23.5 bits (50), Expect = 5.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 52 NGTFTSPNFPGLYPRDTECHYFFY 75
NG + N G++ + Y Y
Sbjct: 400 NGDWPQENIAGVFNKSCAISYTSY 423
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059
{Vibrio cholerae [TaxId: 666]}
Length = 201
Score = 23.2 bits (50), Expect = 6.2
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 66 RDTECHYFFYGRNDERIKLVFESFDVEGVPP 96
D H D + E+ ++ V
Sbjct: 47 EDVVIHLVLESTRDYSRTITVEANEISDVGG 77
>d1h7za_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
adenovirus type 3 [TaxId: 45659]}
Length = 191
Score = 22.9 bits (49), Expect = 8.6
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 12 ANGFLLVKPSLLGTNFGINTGHQLSELPCAFMFNST 47
A G +L S L T+ + FM ++T
Sbjct: 71 ATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTT 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.451
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,023
Number of extensions: 14445
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 16
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)