Query psy12371
Match_columns 72
No_of_seqs 119 out of 1090
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 17:27:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.6 4E-15 8.7E-20 79.7 6.6 51 14-69 1-51 (110)
2 cd00041 CUB CUB domain; extrac 99.5 3.8E-14 8.3E-19 76.1 6.6 51 14-68 1-51 (113)
3 smart00042 CUB Domain first fo 99.5 2.5E-13 5.3E-18 72.1 5.9 42 28-69 1-42 (102)
4 KOG4292|consensus 98.8 2E-08 4.4E-13 65.5 5.7 55 10-69 288-342 (454)
5 KOG4586|consensus 98.3 3E-06 6.5E-11 47.6 5.2 46 24-69 46-92 (156)
6 KOG4292|consensus 97.7 4.9E-05 1.1E-09 50.1 3.3 51 13-67 168-218 (454)
7 PF02408 CUB_2: CUB-like domai 95.5 0.037 8E-07 30.4 4.1 27 37-63 36-62 (120)
8 PF01186 Lysyl_oxidase: Lysyl 70.1 4.9 0.00011 24.5 2.2 39 31-69 135-177 (205)
9 KOG2689|consensus 50.4 37 0.0008 21.8 3.7 33 31-63 195-229 (290)
10 smart00166 UBX Domain present 40.0 51 0.0011 16.4 3.5 21 43-63 3-23 (80)
11 PF02843 GARS_C: Phosphoribosy 37.3 27 0.00059 18.3 1.5 15 29-43 6-20 (93)
12 PF05428 CRF-BP: Corticotropin 36.9 1E+02 0.0022 20.1 4.2 28 40-67 76-103 (311)
13 PF06473 FGF-BP1: FGF binding 32.4 64 0.0014 20.0 2.7 29 27-62 43-72 (231)
14 PF02083 Urotensin_II: Urotens 26.8 22 0.00049 11.7 0.1 7 42-48 3-9 (12)
15 PF05015 Plasmid_killer: Plasm 25.8 1E+02 0.0022 16.0 2.5 23 41-63 59-81 (93)
16 TIGR00008 infA translation ini 24.0 71 0.0015 16.0 1.6 24 48-71 42-65 (68)
17 cd01770 p47_UBX p47-like ubiqu 23.6 1.2E+02 0.0025 15.4 3.3 19 44-62 4-22 (79)
18 PF15243 ANAPC15: Anaphase-pro 22.9 64 0.0014 17.2 1.4 17 32-48 2-18 (92)
19 PF14400 Transglut_i_TM: Inact 22.8 1.1E+02 0.0023 18.1 2.4 30 27-56 51-83 (165)
20 cd01773 Faf1_like1_UBX Faf1 ik 22.7 1.3E+02 0.0028 15.6 3.5 21 42-62 3-23 (82)
21 cd01767 UBX UBX (ubiquitin reg 22.6 1.1E+02 0.0025 14.9 3.1 19 44-62 2-20 (77)
22 PRK12442 translation initiatio 22.0 91 0.002 16.5 1.8 25 46-70 42-66 (87)
23 PF13473 Cupredoxin_1: Cupredo 21.3 52 0.0011 17.2 0.9 17 48-64 36-52 (104)
24 COG0361 InfA Translation initi 20.8 1.3E+02 0.0028 15.4 2.2 24 48-71 44-67 (75)
25 cd01772 SAKS1_UBX SAKS1-like U 20.4 1.4E+02 0.0029 15.0 3.2 19 44-62 4-22 (79)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.61 E-value=4e-15 Score=79.69 Aligned_cols=51 Identities=39% Similarity=0.756 Sum_probs=44.4
Q ss_pred CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
|++.+ ....|.|.||+||..|+.+..|.|.|.++++.+|.|.|..|+|+..
T Consensus 1 Cg~~~-----~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~ 51 (110)
T PF00431_consen 1 CGGRL-----TNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESS 51 (110)
T ss_dssp SEEEE-----CSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--T
T ss_pred CcCEE-----ECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceee
Confidence 78886 6899999999999999999999999999999999999999999854
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.54 E-value=3.8e-14 Score=76.08 Aligned_cols=51 Identities=39% Similarity=0.813 Sum_probs=45.8
Q ss_pred CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeec
Q psy12371 14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK 68 (72)
Q Consensus 14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~ 68 (72)
|++.+. ....|.|.||+||..|+++..|.|.|+++++.+|.|.|..|+|+.
T Consensus 1 C~~~~~----~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~ 51 (113)
T cd00041 1 CGGTLT----ASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES 51 (113)
T ss_pred CCCEEc----cCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc
Confidence 778874 224999999999999999999999999999999999999999973
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.46 E-value=2.5e-13 Score=72.15 Aligned_cols=42 Identities=40% Similarity=0.841 Sum_probs=39.5
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 28 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
|.|.||+||..||++..|.|.|+++++.+|.|.|..|+|+..
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~ 42 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESS 42 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCC
Confidence 679999999999999999999999999999999999999853
No 4
>KOG4292|consensus
Probab=98.78 E-value=2e-08 Score=65.52 Aligned_cols=55 Identities=24% Similarity=0.596 Sum_probs=48.8
Q ss_pred CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
..+.|+.+++ ...|.+.||+||..|+++..|+|++.++.++.|.+.|+.+-++.+
T Consensus 288 ~~~~C~~~~~-----~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s 342 (454)
T KOG4292|consen 288 QISDCNRTYH-----GKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENS 342 (454)
T ss_pred ccccccccee-----cceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhh
Confidence 3588998884 589999999999999999999999999999999999888877654
No 5
>KOG4586|consensus
Probab=98.28 E-value=3e-06 Score=47.62 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=41.0
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~~ 69 (72)
.+..+.++||+||..||++.+|...|.+...+-|.+.|.. |.||++
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps 92 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPS 92 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEeccc
Confidence 4667899999999999999999999999999889999986 778754
No 6
>KOG4292|consensus
Probab=97.67 E-value=4.9e-05 Score=50.10 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=44.0
Q ss_pred CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371 13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67 (72)
Q Consensus 13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le 67 (72)
.|..++. ++..|.+.+|+||..|..+.-|.|.+.+++++++.|++..+++.
T Consensus 168 ~~~~t~~----~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~ 218 (454)
T KOG4292|consen 168 TYNITFT----TQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLA 218 (454)
T ss_pred ccceeec----CcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCC
Confidence 4555663 56679999999999999999999999999999999999988664
No 7
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=95.54 E-value=0.037 Score=30.44 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCCCCCCceEEEEEcCCCCeEEEEEeE
Q psy12371 37 SNYPADIKCAYTFRARAQERIRVVLED 63 (72)
Q Consensus 37 ~~y~~~~~C~w~i~~~~~~~i~L~f~~ 63 (72)
..+|.+..|.|.|.+|.|.-++|.+..
T Consensus 36 ~~~p~n~~C~y~i~iP~G~~a~v~~~~ 62 (120)
T PF02408_consen 36 PQFPANQNCTYQINIPKGYYAKVTLSA 62 (120)
T ss_pred cccCCCCceEEEEEcCCceEEEEEEEE
Confidence 357889999999999999988887743
No 8
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=70.07 E-value=4.9 Score=24.50 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=27.2
Q ss_pred eCCCCCCCCCCCCceEEE-E-EcCCC-CeEEEEEeE-EEeecC
Q psy12371 31 FSPRYPSNYPADIKCAYT-F-RARAQ-ERIRVVLED-FKLEKG 69 (72)
Q Consensus 31 ~SP~~p~~y~~~~~C~w~-i-~~~~~-~~i~L~f~~-f~le~~ 69 (72)
.||++-..|.....|.|. | .+++| +.+++..+. +.|.+.
T Consensus 135 IS~Gc~DtY~~~idcQWiDITdvp~G~Y~l~V~vNP~~~v~Es 177 (205)
T PF01186_consen 135 ISPGCGDTYRHDIDCQWIDITDVPPGTYILQVTVNPEYRVAES 177 (205)
T ss_pred ccCCccccccCCCCccceeecCCCCccEEEEEecCCccccccc
Confidence 689999999999999996 2 34554 556666553 444433
No 9
>KOG2689|consensus
Probab=50.36 E-value=37 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=23.8
Q ss_pred eCCCCCCCCCC--CCceEEEEEcCCCCeEEEEEeE
Q psy12371 31 FSPRYPSNYPA--DIKCAYTFRARAQERIRVVLED 63 (72)
Q Consensus 31 ~SP~~p~~y~~--~~~C~w~i~~~~~~~i~L~f~~ 63 (72)
.+|.-+..-|+ ...|.-.|+.++|+.+..+|..
T Consensus 195 ~s~s~~~~spp~~ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 195 PSPSAPSQSPPTDYSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred CCCCccccCCCCcccceEEEEEcCCCCeeeeecCc
Confidence 34444433344 5789999999999999988853
No 10
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=40.02 E-value=51 Score=16.43 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=17.3
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy12371 43 IKCAYTFRARAQERIRVVLED 63 (72)
Q Consensus 43 ~~C~w~i~~~~~~~i~L~f~~ 63 (72)
..|.-.|+.|+|.++...|..
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCC
Confidence 468889999999999887753
No 11
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=37.31 E-value=27 Score=18.27 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=9.5
Q ss_pred EEeCCCCCCCCCCCC
Q psy12371 29 RFFSPRYPSNYPADI 43 (72)
Q Consensus 29 ~i~SP~~p~~y~~~~ 43 (72)
.+.|++||..|..+.
T Consensus 6 v~as~GYP~~~~~g~ 20 (93)
T PF02843_consen 6 VLASKGYPGSYEKGF 20 (93)
T ss_dssp EEEETTTTSS--SS-
T ss_pred EEeCCCcCCCCCCCC
Confidence 577899998886543
No 12
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=36.93 E-value=1e+02 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371 40 PADIKCAYTFRARAQERIRVVLEDFKLE 67 (72)
Q Consensus 40 ~~~~~C~w~i~~~~~~~i~L~f~~f~le 67 (72)
.+...|.-.+-+.+...|.+.|..+++.
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid 103 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID 103 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc
Confidence 4577899888888899999999999885
No 13
>PF06473 FGF-BP1: FGF binding protein 1 (FGF-BP1); InterPro: IPR010510 This family consists of several mammalian FGF binding protein 1. Fibroblast growth factors (FGFs) play important roles during foetal and embryonic development []. Fibroblast growth factor-binding protein (FGF-BP) 1 is a secreted protein that can bind fibroblast growth factors (FGFs) 1 and 2 [].
Probab=32.39 E-value=64 Score=20.03 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCCCCCCCceEEEE-EcCCCCeEEEEEe
Q psy12371 27 QGRFFSPRYPSNYPADIKCAYTF-RARAQERIRVVLE 62 (72)
Q Consensus 27 ~g~i~SP~~p~~y~~~~~C~w~i-~~~~~~~i~L~f~ 62 (72)
+|.|.++ ....|.|.+ ...++..++|...
T Consensus 43 ~GkF~Tk-------~~~~Ctw~v~~~~~~~~L~V~C~ 72 (231)
T PF06473_consen 43 SGKFVTK-------DQHACTWQVTTGEDGVELRVECK 72 (231)
T ss_pred cceeecC-------CCCceEEEeccCCCceEEEEEEc
Confidence 4666665 456899999 4444444555443
No 14
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=26.82 E-value=22 Score=11.72 Aligned_cols=7 Identities=14% Similarity=0.634 Sum_probs=4.5
Q ss_pred CCceEEE
Q psy12371 42 DIKCAYT 48 (72)
Q Consensus 42 ~~~C~w~ 48 (72)
..+|.|.
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 4567775
No 15
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=25.81 E-value=1e+02 Score=16.00 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=17.8
Q ss_pred CCCceEEEEEcCCCCeEEEEEeE
Q psy12371 41 ADIKCAYTFRARAQERIRVVLED 63 (72)
Q Consensus 41 ~~~~C~w~i~~~~~~~i~L~f~~ 63 (72)
.+..=.|.|.+..+.+|.+.|.+
T Consensus 59 G~~~g~~Si~i~~~~RliF~~~~ 81 (93)
T PF05015_consen 59 GDRKGQWSIRINGNWRLIFRFED 81 (93)
T ss_pred CCCCCcEEEEeCCCEEEEEEEeC
Confidence 34556899999999988877764
No 16
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=24.00 E-value=71 Score=16.00 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEcCCCCeEEEEEeEEEeecCCC
Q psy12371 48 TFRARAQERIRVVLEDFKLEKGDV 71 (72)
Q Consensus 48 ~i~~~~~~~i~L~f~~f~le~~~~ 71 (72)
.|....|-++.+.+..|+++..+|
T Consensus 42 rI~I~~GD~V~Ve~spyd~tkgrI 65 (68)
T TIGR00008 42 YIRILPGDKVKVELSPYDLTRGRI 65 (68)
T ss_pred cEEECCCCEEEEEECcccCCcEeE
Confidence 456677788888888888765543
No 17
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=23.62 E-value=1.2e+02 Score=15.36 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.0
Q ss_pred ceEEEEEcCCCCeEEEEEe
Q psy12371 44 KCAYTFRARAQERIRVVLE 62 (72)
Q Consensus 44 ~C~w~i~~~~~~~i~L~f~ 62 (72)
.|.-.|+.++|.++..+|.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~ 22 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFN 22 (79)
T ss_pred eeEEEEECCCCCEEEEEeC
Confidence 5777899999999988775
No 18
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=22.85 E-value=64 Score=17.19 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCceEEE
Q psy12371 32 SPRYPSNYPADIKCAYT 48 (72)
Q Consensus 32 SP~~p~~y~~~~~C~w~ 48 (72)
||-||..+|.-..-.|.
T Consensus 2 st~FPsl~Prv~~~lwf 18 (92)
T PF15243_consen 2 STQFPSLFPRVTDPLWF 18 (92)
T ss_pred CCcCCCcCCCCCCcccc
Confidence 57788888887777774
No 19
>PF14400 Transglut_i_TM: Inactive transglutaminase fused to 7 transmembrane helices
Probab=22.77 E-value=1.1e+02 Score=18.11 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=22.9
Q ss_pred cEEEeCCCCCCCC---CCCCceEEEEEcCCCCe
Q psy12371 27 QGRFFSPRYPSNY---PADIKCAYTFRARAQER 56 (72)
Q Consensus 27 ~g~i~SP~~p~~y---~~~~~C~w~i~~~~~~~ 56 (72)
...+.||+|...+ ..+....|.++...|..
T Consensus 51 ~E~~~SpGYGls~~~~~~~RrA~WS~R~A~G~Q 83 (165)
T PF14400_consen 51 DENFASPGYGLSIVDDDGNRRAEWSIRRASGPQ 83 (165)
T ss_pred ccccccCCCCeEEEecCCCcEEEEecccCCCce
Confidence 4467899998655 45778999999988864
No 20
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.70 E-value=1.3e+02 Score=15.58 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.1
Q ss_pred CCceEEEEEcCCCCeEEEEEe
Q psy12371 42 DIKCAYTFRARAQERIRVVLE 62 (72)
Q Consensus 42 ~~~C~w~i~~~~~~~i~L~f~ 62 (72)
...|.-.|+.|.|.++.-+|.
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~ 23 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALP 23 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeC
Confidence 446788899999999988775
No 21
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=22.59 E-value=1.1e+02 Score=14.95 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.1
Q ss_pred ceEEEEEcCCCCeEEEEEe
Q psy12371 44 KCAYTFRARAQERIRVVLE 62 (72)
Q Consensus 44 ~C~w~i~~~~~~~i~L~f~ 62 (72)
.|.-.|+.|+|.++.-.|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~ 20 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFN 20 (77)
T ss_pred cEEEEEEcCCCCEEEEEeC
Confidence 4677788899998887775
No 22
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=22.04 E-value=91 Score=16.48 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.2
Q ss_pred EEEEEcCCCCeEEEEEeEEEeecCC
Q psy12371 46 AYTFRARAQERIRVVLEDFKLEKGD 70 (72)
Q Consensus 46 ~w~i~~~~~~~i~L~f~~f~le~~~ 70 (72)
.-.|..-.|-+|.+.+..||++..+
T Consensus 42 ~~rIrIl~GD~V~VE~spYDltkGR 66 (87)
T PRK12442 42 KHRIRILAGDRVTLELSPYDLTKGR 66 (87)
T ss_pred eeeEEecCCCEEEEEECcccCCcee
Confidence 3357777788888888888876544
No 23
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=21.31 E-value=52 Score=17.17 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=11.8
Q ss_pred EEEcCCCCeEEEEEeEE
Q psy12371 48 TFRARAQERIRVVLEDF 64 (72)
Q Consensus 48 ~i~~~~~~~i~L~f~~f 64 (72)
.|.++.|..+.|.|.+-
T Consensus 36 ~i~v~~G~~v~l~~~N~ 52 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNN 52 (104)
T ss_dssp EEEEETTCEEEEEEEE-
T ss_pred EEEEcCCCeEEEEEEEC
Confidence 47777788777777654
No 24
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=1.3e+02 Score=15.43 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=17.7
Q ss_pred EEEcCCCCeEEEEEeEEEeecCCC
Q psy12371 48 TFRARAQERIRVVLEDFKLEKGDV 71 (72)
Q Consensus 48 ~i~~~~~~~i~L~f~~f~le~~~~ 71 (72)
.|...+|-.|.+...+|++...+|
T Consensus 44 ~i~I~~GD~V~Ve~~~~d~~kg~I 67 (75)
T COG0361 44 RIRILPGDVVLVELSPYDLTKGRI 67 (75)
T ss_pred eEEeCCCCEEEEEecccccccccE
Confidence 455677888888888888776553
No 25
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=20.44 E-value=1.4e+02 Score=14.97 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=15.6
Q ss_pred ceEEEEEcCCCCeEEEEEe
Q psy12371 44 KCAYTFRARAQERIRVVLE 62 (72)
Q Consensus 44 ~C~w~i~~~~~~~i~L~f~ 62 (72)
.|.-.|+.|+|.++.-.|.
T Consensus 4 ~~~i~iRlp~G~~~~~~F~ 22 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFK 22 (79)
T ss_pred EEEEEEECCCCCEEEEEeC
Confidence 4777889999999888775
Done!