Query psy12371
Match_columns 72
No_of_seqs 119 out of 1090
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 17:27:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wno_A Tumor necrosis factor-i 99.7 4.2E-17 1.5E-21 92.1 8.1 54 11-69 4-57 (149)
2 3poj_A Mannan-binding lectin s 99.7 2.2E-17 7.7E-22 89.3 5.5 54 12-69 2-56 (115)
3 1szb_A Mannose binding lectin- 99.6 3.5E-16 1.2E-20 89.5 6.5 46 24-69 9-54 (170)
4 1nzi_A Complement C1S componen 99.6 9E-16 3.1E-20 86.8 6.5 46 24-69 2-47 (159)
5 2qqm_A Neuropilin-1; VEGF rece 99.6 3E-15 1E-19 96.1 6.8 55 10-69 7-61 (450)
6 2qqo_A Neuropilin-2; VEGF rece 99.6 6.6E-15 2.3E-19 94.8 8.0 53 12-69 6-58 (460)
7 3dem_A Complement factor MAsp- 99.6 3.4E-15 1.2E-19 90.6 5.9 54 12-69 164-218 (278)
8 4aqb_A Mannan-binding lectin s 99.6 4.9E-15 1.7E-19 92.6 5.9 46 24-69 6-51 (361)
9 1nt0_A MAsp2, mannose-binding 99.5 2.1E-14 7.3E-19 87.7 6.5 54 12-69 163-217 (286)
10 4gz9_A Neuropilin-1, A5 protei 99.5 2E-14 6.8E-19 94.8 6.4 52 13-69 128-179 (577)
11 3dem_A Complement factor MAsp- 99.5 2.3E-14 7.9E-19 87.0 6.2 46 24-69 6-51 (278)
12 2qqk_A Neuropilin-2; VEGF rece 99.5 4.1E-14 1.4E-18 93.1 7.6 52 13-69 126-177 (579)
13 1nt0_A MAsp2, mannose-binding 99.5 3.7E-14 1.3E-18 86.6 6.8 46 24-69 5-50 (286)
14 3kq4_B Cubilin; protein-protei 99.5 7.4E-14 2.5E-18 89.6 7.6 66 1-69 327-399 (457)
15 3kq4_B Cubilin; protein-protei 99.5 1.6E-14 5.4E-19 92.7 4.0 51 14-69 1-51 (457)
16 4gz9_A Neuropilin-1, A5 protei 99.5 7.6E-14 2.6E-18 92.1 6.2 55 11-69 6-62 (577)
17 1spp_A Major seminal plasma gl 99.4 4E-13 1.4E-17 72.1 7.1 46 12-67 4-49 (109)
18 2qqk_A Neuropilin-2; VEGF rece 99.4 4.6E-13 1.6E-17 88.2 6.9 55 10-68 2-58 (579)
19 1spp_B Major seminal plasma gl 99.4 8.4E-13 2.9E-17 71.5 6.7 46 12-67 7-52 (116)
20 1sfp_A ASFP; spermadhesin, bov 99.4 1.7E-12 5.7E-17 70.1 7.3 47 11-67 7-53 (114)
21 4aqb_A Mannan-binding lectin s 99.4 9.4E-13 3.2E-17 82.3 6.0 52 12-68 165-217 (361)
22 3sbt_A PRE-mRNA-splicing facto 21.0 63 0.0022 19.6 2.1 31 28-60 1-31 (260)
No 1
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=92.05 Aligned_cols=54 Identities=31% Similarity=0.631 Sum_probs=50.1
Q ss_pred CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
...|++.+ +...|.|.||+||..||++..|.|.|+++.+++|+|.|.+|+||.+
T Consensus 4 ~~~Cgg~l-----~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~ 57 (149)
T 2wno_A 4 AKECGGVF-----TDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD 57 (149)
T ss_dssp CSCCCEEE-----CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred CCCCCCEE-----ECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 46799998 5778999999999999999999999999999999999999999964
No 2
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.70 E-value=2.2e-17 Score=89.29 Aligned_cols=54 Identities=28% Similarity=0.575 Sum_probs=48.6
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EEEeecC
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE-DFKLEKG 69 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~-~f~le~~ 69 (72)
..|++.+. +...|.|.||+||..||++..|.|.|+++++++|+|.|. .|+||..
T Consensus 2 ~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~ 56 (115)
T 3poj_A 2 VECSGNLF----TQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH 56 (115)
T ss_dssp -CEEEEEE----CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC
T ss_pred eECCCceE----cCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC
Confidence 46888864 688999999999999999999999999999999999999 5999964
No 3
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.65 E-value=3.5e-16 Score=89.54 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
++..|.|.||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus 9 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 54 (170)
T 1szb_A 9 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS 54 (170)
T ss_dssp CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred cCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC
Confidence 7889999999999999999999999999999999999999999964
No 4
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.63 E-value=9e-16 Score=86.78 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=43.6
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
++..|.|.||+||..||++..|.|.|+++.+++|+|.|.+|+||.+
T Consensus 2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 47 (159)
T 1nzi_A 2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS 47 (159)
T ss_dssp CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCC
Confidence 5778999999999999999999999999999999999999999964
No 5
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.59 E-value=3e-15 Score=96.07 Aligned_cols=55 Identities=33% Similarity=0.704 Sum_probs=50.0
Q ss_pred CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
.+..|++.+ ....|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus 7 ~~~~Cg~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~ 61 (450)
T 2qqm_A 7 RGPECSQNY-----TTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD 61 (450)
T ss_dssp --CTTCEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred cCCCCCCeE-----eCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec
Confidence 357899998 5779999999999999999999999999999999999999999964
No 6
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=94.78 Aligned_cols=53 Identities=32% Similarity=0.699 Sum_probs=49.1
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
..|++.+ +...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus 6 ~~Cg~~l-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~ 58 (460)
T 2qqo_A 6 EDCSKNF-----TSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD 58 (460)
T ss_dssp -CCCEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC
T ss_pred CCCCCEE-----eCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccc
Confidence 4699998 5789999999999999999999999999999999999999999963
No 7
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=90.62 Aligned_cols=54 Identities=28% Similarity=0.600 Sum_probs=48.3
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeecC
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKG 69 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~~ 69 (72)
..|++.+. +...|.|.||+||..||++..|.|.|+++.+++|.|.|.+ |+||..
T Consensus 164 ~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~ 218 (278)
T 3dem_A 164 VECSDNLF----TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218 (278)
T ss_dssp CCCCCCCB----CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCC
T ss_pred ccCCCcee----cCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccC
Confidence 56776543 6889999999999999999999999999999999999998 999863
No 8
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=92.64 Aligned_cols=46 Identities=28% Similarity=0.558 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
++..|.|+||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus 6 t~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~ 51 (361)
T 4aqb_A 6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS 51 (361)
T ss_dssp ESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred eCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCC
Confidence 6889999999999999999999999999999999999999999975
No 9
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.53 E-value=2.1e-14 Score=87.65 Aligned_cols=54 Identities=31% Similarity=0.514 Sum_probs=48.2
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EEEeecC
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLE-DFKLEKG 69 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~-~f~le~~ 69 (72)
..|++.+. +...|.|.||+||..||++..|.|.|+++++++|.|.|. +|+||..
T Consensus 163 ~~Cg~~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~ 217 (286)
T 1nt0_A 163 ALCSGQVF----TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH 217 (286)
T ss_dssp ECCEEEEE----CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC
T ss_pred ccccCcee----cCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccC
Confidence 36877743 688999999999999999999999999999999999996 7999864
No 10
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.52 E-value=2e-14 Score=94.82 Aligned_cols=52 Identities=33% Similarity=0.718 Sum_probs=48.0
Q ss_pred CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
.|++.+ +...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus 128 ~C~~~~-----~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~ 179 (577)
T 4gz9_A 128 ECSQNY-----TAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQD 179 (577)
T ss_dssp EEEEEE-----CSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC
T ss_pred ccceee-----cCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeec
Confidence 477776 6889999999999999999999999999999999999999999864
No 11
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=86.96 Aligned_cols=46 Identities=28% Similarity=0.558 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
+...|.|.||+||..||++..|.|.|+++++++|+|.|.+|+||.+
T Consensus 6 t~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~ 51 (278)
T 3dem_A 6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS 51 (278)
T ss_dssp -CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred ccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC
Confidence 6889999999999999999999999999999999999999999974
No 12
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.52 E-value=4.1e-14 Score=93.12 Aligned_cols=52 Identities=33% Similarity=0.713 Sum_probs=46.7
Q ss_pred CCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 13 TCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 13 ~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
.|++.+ +..+|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.+
T Consensus 126 ~Cg~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~ 177 (579)
T 2qqk_A 126 DCSKNF-----TSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHD 177 (579)
T ss_dssp CCCCEE-----CCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC---
T ss_pred ccccee-----ccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecc
Confidence 499887 5789999999999999999999999999999999999999999963
No 13
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.51 E-value=3.7e-14 Score=86.62 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=44.0
Q ss_pred CCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 24 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
++..|.|.||+||..||++..|.|.|+++++++|+|.|..|+||.+
T Consensus 5 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~ 50 (286)
T 1nt0_A 5 EPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS 50 (286)
T ss_dssp CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCC
T ss_pred cCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCC
Confidence 6889999999999999999999999999999999999999999964
No 14
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.50 E-value=7.4e-14 Score=89.62 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=55.0
Q ss_pred CcccCCcc-cCC------CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 1 MFHTDGHK-LSG------TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 1 ~f~~~~~~-~~~------~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
+|++|... ..| ..|++.+. .....|.|.||+||..||++..|.|.|+++++++|+|.|..|+||.+
T Consensus 327 ~f~sd~~~~~~GF~a~y~~~C~~~~~---~~~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~f~le~~ 399 (457)
T 3kq4_B 327 KLRTDEGQQGRGFKAEYRQTCENVVI---VNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHH 399 (457)
T ss_dssp EEECCSSCCCCCCEEEEEECCTTEEE---CSCSSEEEECTTTTSCCCSSCEEEEEEECSTTCCCEEEEEEEECCCC
T ss_pred EEEeCCcccCCeEEEEEEeecCCccc---ccceeeEEecCCCCccCCCCCceEEEEEcCCCCEEEEEEeEEEEccC
Confidence 36777643 233 47888874 24567999999999999999999999999999999999999999964
No 15
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=92.71 Aligned_cols=51 Identities=29% Similarity=0.583 Sum_probs=48.1
Q ss_pred CCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEeecC
Q psy12371 14 CDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKG 69 (72)
Q Consensus 14 C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le~~ 69 (72)
|++.+ ++..|.|.||+||..||++..|.|.|.++++++|+|.|..|+||.+
T Consensus 1 CGg~l-----~~~~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~ 51 (457)
T 3kq4_B 1 CGEIL-----TESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH 51 (457)
T ss_dssp CCCEE-----CSSEEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCC
T ss_pred CCCeE-----ecCCEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccC
Confidence 88887 6889999999999999999999999999999999999999999964
No 16
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.47 E-value=7.6e-14 Score=92.07 Aligned_cols=55 Identities=27% Similarity=0.541 Sum_probs=47.3
Q ss_pred CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCC-CeEEEEEe-EEEeecC
Q psy12371 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQ-ERIRVVLE-DFKLEKG 69 (72)
Q Consensus 11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~-~~i~L~f~-~f~le~~ 69 (72)
...|++.+. ....|.|+||+||..||++..|.|.|++|.+ .+|.|.|. .|+||..
T Consensus 6 ~~~CGg~l~----~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~~ 62 (577)
T 4gz9_A 6 SDKCGGTIK----IENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDR 62 (577)
T ss_dssp -CCSSEEEE----CSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCCG
T ss_pred cCCCCCEEE----cCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecCC
Confidence 357999985 4567999999999999999999999999876 68999997 6999853
No 17
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.45 E-value=4e-13 Score=72.13 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=42.3
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le 67 (72)
..|++.+ +...|.|.|| ||++..|.|.|+++++++|.|.|.+|+++
T Consensus 4 ~~Cgg~l-----~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~ 49 (109)
T 1spp_A 4 HACGGRL-----TDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT 49 (109)
T ss_dssp CSSCEEE-----ECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC
T ss_pred cCCCCEE-----eCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc
Confidence 5799998 4778999998 88999999999999999999999999985
No 18
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.41 E-value=4.6e-13 Score=88.15 Aligned_cols=55 Identities=25% Similarity=0.616 Sum_probs=47.0
Q ss_pred CCCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCC-CCeEEEEEe-EEEeec
Q psy12371 10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARA-QERIRVVLE-DFKLEK 68 (72)
Q Consensus 10 ~~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~-~~~i~L~f~-~f~le~ 68 (72)
+...|++.+. ....|.|.||+||..||++..|.|.|.++. +++|.|.|. .|+||.
T Consensus 2 p~~~Cgg~~~----~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~ 58 (579)
T 2qqk_A 2 PDPPCGGRLN----SKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK 58 (579)
T ss_dssp ---CCCEEEE----TTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC
T ss_pred CCCCCCCEEE----eCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc
Confidence 3467999985 346899999999999999999999999996 578999999 899985
No 19
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.41 E-value=8.4e-13 Score=71.50 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=42.4
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le 67 (72)
..|++.+ +...|.|.|| ||++..|.|.|+++++++|.|.|.+|+|+
T Consensus 7 ~~Cgg~l-----~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~ 52 (116)
T 1spp_B 7 DECGRVI-----KDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA 52 (116)
T ss_dssp GGTTEEE-----CCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred CCCCCEE-----eCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence 6799998 5778999998 78999999999999999999999999985
No 20
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.40 E-value=1.7e-12 Score=70.07 Aligned_cols=47 Identities=19% Similarity=0.423 Sum_probs=42.8
Q ss_pred CCCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEEEee
Q psy12371 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67 (72)
Q Consensus 11 ~~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~f~le 67 (72)
...|++.+ +...|.|.|| ||++..|.|.|+++++++|+|.|.+|+|+
T Consensus 7 ~~~Cgg~l-----~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l~ 53 (114)
T 1sfp_A 7 NTNCGGIL-----KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53 (114)
T ss_dssp ECSSCEEE-----CCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred CCCCCCeE-----ECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeeee
Confidence 46899998 5778999997 77899999999999999999999999985
No 21
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.37 E-value=9.4e-13 Score=82.31 Aligned_cols=52 Identities=31% Similarity=0.608 Sum_probs=45.2
Q ss_pred CCCCcEEeccccCCCcEEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-EEeec
Q psy12371 12 TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEK 68 (72)
Q Consensus 12 ~~C~~~~~~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~f~~-f~le~ 68 (72)
..|++.+ +...|.|.||+||..||++..|.|.|.++.+++|.|.|.+ |++|.
T Consensus 165 ~~c~~~~-----~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~ 217 (361)
T 4aqb_A 165 ECSDNLF-----TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED 217 (361)
T ss_dssp CCCCCCB-----CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCC
T ss_pred ccccceE-----eCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccC
Confidence 4455555 6889999999999999999999999999999999999987 56654
No 22
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=21.04 E-value=63 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEcCCCCeEEEE
Q psy12371 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVV 60 (72)
Q Consensus 28 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~L~ 60 (72)
|.+.|-+|.+.+.+.. .|.+.-..-+++.++
T Consensus 1 ~~l~s~ny~eLF~n~~--~wfvDDtnvYrvt~h 31 (260)
T 3sbt_A 1 GAMNSSNYAELFNNDI--KLFVDDTNVYRVTVH 31 (260)
T ss_dssp -CBCTTSGGGGGSSSC--EEEEECTTTSEEEEE
T ss_pred CccccccHHHHhcCce--EEEEeCCcEEEEEEE
Confidence 3456778877777664 788888777877653
Done!