RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12371
(72 letters)
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 54.1 bits (130), Expect = 1e-10
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 2 FHTD------GHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQE 55
F +D G N T G F SP YP Y +C + ++
Sbjct: 212 FKSDQIDTRSGFSAYWDGSSTGC-GGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGS 270
Query: 56 RIRVVLEDFKLEKGD 70
+ +DF LE
Sbjct: 271 AFELEFKDFHLEHHP 285
Score = 52.2 bits (125), Expect = 5e-10
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
T G SP +P+ YP I C + + I ++ E F LE
Sbjct: 4 ILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHY 52
Score = 49.1 bits (117), Expect = 6e-09
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 2 FHTD------GHKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQE 55
TD G K V N T G S YP+ Y + C +T RA
Sbjct: 328 LRTDEGQQGRGFKAEYRQTCENVVIVNQT--YGILESIGYPNPYSENQHCNWTIRATTGN 385
Query: 56 RIRVVLEDFKLE 67
+ F LE
Sbjct: 386 TVNYTFLAFDLE 397
Score = 48.7 bits (116), Expect = 1e-08
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 2 FHTDGHKLSG-------TTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQ 54
F TD ++T G F SP +P+NYP + +C Y R
Sbjct: 93 FVTDSDLAYEGFLINYEAISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTG 152
Query: 55 ERIRVVLEDFKLEKGD 70
+ I V +F LE+
Sbjct: 153 QLIAVHFTNFSLEEAI 168
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 53.0 bits (127), Expect = 2e-10
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
G+ SP YP +YP+D + + RI++ F LE
Sbjct: 6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY 52
Score = 49.5 bits (118), Expect = 4e-09
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV-LEDFKLEKG 69
TC + T+ G SP +P+ YP +C YT + + + F +E
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218
Query: 70 D 70
Sbjct: 219 P 219
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 53.1 bits (127), Expect = 3e-10
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
G+ SP YP +YP+D + + RI++ F LE
Sbjct: 6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY 52
Score = 47.3 bits (112), Expect = 3e-08
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
TC + T+ G SP +P+ YP +C YT + + ED +
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218
Score = 27.6 bits (61), Expect = 0.24
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 2 FHTDG-HKLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIR-- 58
FH+D + G Y+ Q PS K ++
Sbjct: 260 FHSDNSGENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKD 319
Query: 59 -VVLEDFKLE 67
V ++ F++E
Sbjct: 320 NVEMDTFQIE 329
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein,
cell adhesion, extracellular matrix; 2.30A {Homo
sapiens}
Length = 149
Score = 51.2 bits (123), Expect = 3e-10
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
T P+ F SP +P+ Y + C + R + +RI + DF LE
Sbjct: 10 VFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDP 58
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 52.3 bits (125), Expect = 4e-10
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
GR SP +P Y ++T A R+R+ F LE
Sbjct: 9 GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSY 51
Score = 51.5 bits (123), Expect = 9e-10
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 11 GTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVV-LEDFKLEKG 69
TC T G SP YP YP CAY R I + +E F +E
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH 217
Query: 70 D 70
Sbjct: 218 P 218
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 52.3 bits (125), Expect = 6e-10
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 2 FHTDGH-KLSGTTCDYQFVSTNH-------TRPQGRFFSPRYPSNYPADIKCAYTFRARA 53
F +D + +G + Y+ T T P G SP +P YP ++ C +T A+
Sbjct: 102 FTSDYARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKP 161
Query: 54 QERIRVVLEDFKLEKGD 70
+ I + F LE
Sbjct: 162 KMEIILQFLIFDLEHDP 178
Score = 44.6 bits (105), Expect = 3e-07
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFRA-RAQERIRVVLEDFKLE 67
+++ G SP YP +YP+ C + A ++I +
Sbjct: 11 NSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEI 56
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 50.6 bits (121), Expect = 8e-10
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 26 PQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
G SP YP YP++++ ++ I + +E +
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSE 48
Score = 27.9 bits (62), Expect = 0.20
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 2 FHTDGH---KLSGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKC 45
F +D + +G Y N + +N+ C
Sbjct: 95 FKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFC 141
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 48.8 bits (117), Expect = 2e-09
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLED-FKLEKGD 70
T+ G SP YP+ YP +C+YT + + ED F +E
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP 57
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 49.7 bits (118), Expect = 5e-09
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEK 68
N T P G SP +P YP ++ C +T A+ + I + F LE
Sbjct: 11 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEH 57
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 48.4 bits (115), Expect = 7e-09
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 26 PQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
GR SP +P Y D + +T A R+R+ F LE
Sbjct: 11 VFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSH 55
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 48.5 bits (115), Expect = 1e-08
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 10 SGTTCDYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
G C + T P G SP +P YP ++C Y A I + E F LE
Sbjct: 7 RGPECSQNY-----TTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLE 59
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma
proteins, spermadhesins, CUB domain architecture,
complex (seminal plasma protein/SPP); 2.40A {Sus
scrofa} SCOP: b.23.1.1
Length = 116
Score = 40.1 bits (94), Expect = 4e-06
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
G + N C +T + +++R+ + L
Sbjct: 14 KDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA 52
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex
(seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP:
b.23.1.1
Length = 109
Score = 37.4 bits (87), Expect = 4e-05
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 15 DYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
DY T G F+ + P C +T + + ++ V + L
Sbjct: 2 DYHACGGRLTDDYGTIFTYKGPKTE-----CVWTLQVDPKYKLLVSIPTLNLT 49
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 36.5 bits (85), Expect = 9e-05
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
G + Y C +T + + +RV ++ +L
Sbjct: 15 KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN 53
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken
structural genomics/P initiative, RSGI, NPPSFA; 1.85A
{Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB:
2bkn_A 2bko_A 2bkp_A
Length = 205
Score = 25.0 bits (54), Expect = 2.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 52 RAQERIRVVLEDFKLEKGDV 71
R + I E+FK+ GDV
Sbjct: 157 RGKRWIFGPNENFKIRAGDV 176
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 24.8 bits (55), Expect = 3.0
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 44 KCAYTFRARAQERIRVVL 61
C + A +RI +
Sbjct: 54 NCDHHIALTAYKRIEAIS 71
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 23.7 bits (52), Expect = 6.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 44 KCAYTFRARAQERIRVVLED 63
KC + R A+ R+ +L++
Sbjct: 48 KCDHHMRMTARNRLHSLLDE 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.435
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,157,949
Number of extensions: 53361
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 27
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)