RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12371
         (72 letters)



>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 108

 Score = 40.3 bits (93), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLEKGD 70
          G   SP +P  YP  ++C Y   A     I +  E F LE   
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS 43


>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 121

 Score = 39.8 bits (92), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKLE 67
          GR  SP +P  Y  D +  +T  A    R+R+    F LE
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLE 50


>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
          serine protease 2, MASP2 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 114

 Score = 35.7 bits (81), Expect = 7e-05
 Identities = 12/28 (42%), Positives = 12/28 (42%)

Query: 23 HTRPQGRFFSPRYPSNYPADIKCAYTFR 50
           T   G   SP YP  YP    CAY  R
Sbjct: 6  FTGRSGFLSSPEYPQPYPKLSSCAYNIR 33


>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 34.8 bits (79), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 28 GRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDFKL 66
          G   SP YP  YP++++ ++         I +      +
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44


>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I
          {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 109

 Score = 25.4 bits (54), Expect = 0.51
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 15 DYQFVSTNHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRV 59
          DY       T   G  F+ + P        C +T +   + ++ V
Sbjct: 2  DYHACGGRLTDDYGTIFTYKGPKTE-----CVWTLQVDPKYKLLV 41


>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II
          {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 112

 Score = 23.1 bits (48), Expect = 3.9
 Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 5/43 (11%)

Query: 22 NHTRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRVVLEDF 64
                G   +     N      C +T   +  +++R+ +   
Sbjct: 12 VIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYL 49


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase
          carboxyl transferase subunit beta, AccD {Escherichia
          coli [TaxId: 562]}
          Length = 263

 Score = 22.4 bits (47), Expect = 6.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 44 KCAYTFRARAQERIRVVLED 63
          KC +  R  A+ R+  +L++
Sbjct: 26 KCDHHMRMTARNRLHSLLDE 45


>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
          subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 325

 Score = 22.6 bits (48), Expect = 6.6
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 7  HKLSGTTCDYQFVSTNHTRPQGRFFS 32
                  DY++  + + R  G ++ 
Sbjct: 22 ASYGSKKDDYEYCMSEYLRMSGVYWG 47


>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 111

 Score = 22.2 bits (46), Expect = 7.4
 Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 5/36 (13%)

Query: 24 TRPQGRFFSPRYPSNYPADIKCAYTFRARAQERIRV 59
              G   +      Y     C +T +   +  +RV
Sbjct: 12 KEESGVIATY-----YGPKTNCVWTIQMPPEYHVRV 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,387
Number of extensions: 11092
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 10
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)