BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12373
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1
Length = 1341
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
LYE Y++AA+ YI+ KNW K+G+LLPH+ S +QYAKAKEA G Y+E+V AYE A
Sbjct: 862 LYEKGQYYDRAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921
Query: 75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
+ +++V+R+ LDHLN+ AV IV+ + +GAK +A + + GD+G+AI FL+LSKC
Sbjct: 922 KQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNN 981
Query: 135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
+AF L+QQH K+ + + ED N + + +A++FE +K
Sbjct: 982 EAFTLAQQHNKMEIYADIIGAEDTTNE-DYQSIALYFEGEK 1021
>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2
Length = 1342
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 117/180 (65%), Gaps = 5/180 (2%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
LYE Y+KAA+ YI+ KNW K+G LLPH+ S +QYAKAKEA G Y+E+V AYE A
Sbjct: 862 LYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921
Query: 75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
+ + +V+R+ LDHLN+ AV+IV+ + +GAK +A + + GD+G+AI FL++SKC
Sbjct: 922 KQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 981
Query: 135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAM 190
+AF L+QQH K+ + + ED N + + +A++FE +K L + Q SRA+
Sbjct: 982 EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALYFEGEKRYLQAGKFFLLCGQYSRAL 1040
>sp|Q9KCB9|NDK_BACHD Nucleoside diphosphate kinase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=ndk PE=3 SV=1
Length = 147
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 23 EKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82
E+A T Y + K G+L+ I S F + + + + R+ +GA A+ +R
Sbjct: 43 EQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIR 102
Query: 83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIAD 112
D ++ A++++ E AKR D
Sbjct: 103 GDF----GVQVAMNVIHGSDSPESAKREID 128
>sp|Q10204|RRN9_SCHPO RNA polymerase I-specific transcription initiation factor RRN9
homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=acr1 PE=1 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 144 KKLHEFGKFLLEEDEPNPVELK----RLAIHFEEDKGVLTSFRVSQQSRAM 190
KKLH+ G+ E+ PNP L+ RL I E + +FR Q S++M
Sbjct: 128 KKLHKLGRMASSEELPNPDGLRYLVERLQIKLERLFDSVDTFRQEQGSKSM 178
>sp|A5HK05|APBP2_RAT Amyloid protein-binding protein 2 OS=Rattus norvegicus GN=Appbp2
PE=2 SV=1
Length = 585
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 2 GWGALTLD-RGKWTLYESAGNYEKAATCYIQLKNWTKI 38
G+ L D RG LY S GNYEK + L NW ++
Sbjct: 509 GYSGLEYDYRGLIKLYNSTGNYEKVFEYHNVLSNWNRL 546
>sp|Q9DAX9|APBP2_MOUSE Amyloid protein-binding protein 2 OS=Mus musculus GN=Appbp2 PE=2
SV=1
Length = 585
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 2 GWGALTLD-RGKWTLYESAGNYEKAATCYIQLKNWTKI 38
G+ L D RG LY S GNYEK + L NW ++
Sbjct: 509 GYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRL 546
>sp|Q92624|APBP2_HUMAN Amyloid protein-binding protein 2 OS=Homo sapiens GN=APPBP2 PE=1
SV=2
Length = 585
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 2 GWGALTLD-RGKWTLYESAGNYEKAATCYIQLKNWTKI 38
G+ L D RG LY S GNYEK + L NW ++
Sbjct: 509 GYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRL 546
>sp|O59188|REG6_PYRHO Uncharacterized HTH-type transcriptional regulator PH1519
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1519 PE=1 SV=1
Length = 151
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 107
+Y++ + Y E V YE DYD VV++ + ++ + +D++ + EG
Sbjct: 79 KYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGT 133
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 13 WTLYESAGNYEKAATCYIQLKNWTKIGQL----LPHIKSATTFIQYAKAKEAMGSYR 65
W + S GN+ + Y + NWT L L + +AT +Q A AK A G+ +
Sbjct: 511 WAFFPSQGNHLRTEPYYDNVNNWTVTFDLTADQLHNTNTATFTVQIAGAKTANGNAK 567
>sp|Q748B3|MURA_GEOSL UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=murA PE=3 SV=1
Length = 417
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCT 104
ES+GA E N+VR+D H+N++ D+VK + +
Sbjct: 58 ESLGAV--VEGNGNIVRIDTTHVNNVEATYDLVKTMRAS 94
>sp|B4RCP4|NDK_PHEZH Nucleoside diphosphate kinase OS=Phenylobacterium zucineum (strain
HLK1) GN=ndk PE=3 SV=1
Length = 139
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 39 GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82
G+L+ + SA +Q + + A+ YRE +GA A+ D +R
Sbjct: 60 GELVEFMTSAPVVVQVLEGENAVARYREVMGATNPAQAADGTIR 103
>sp|B6JGK9|NDK_OLICO Nucleoside diphosphate kinase OS=Oligotropha carboxidovorans
(strain ATCC 49405 / DSM 1227 / OM5) GN=ndk PE=3 SV=1
Length = 140
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 23 EKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82
E+A T Y K G+L+ + S +Q + A+ YRE +GA + ++ D +R
Sbjct: 45 EQAETFYAVHKARPFFGELVDFMTSGPVVVQVLEGDNAISKYREVMGATDPSKAADGTIR 104
>sp|Q39YP9|MURA_GEOMG UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=murA PE=3 SV=2
Length = 417
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCT 104
ES+GA E N+V++D H+ND+ D+VK + +
Sbjct: 58 ESLGAV--VEGNGNIVKIDTTHVNDVEATYDLVKTMRAS 94
>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum
GN=snpA PE=1 SV=1
Length = 291
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED 76
++A +Y KAA + K W + G K+A F++ + +A SY + G Y++
Sbjct: 36 DAASDYTKAANLFKMSKKWDQAGAAFQ--KAAECFLKGSSKHDAASSYVLAAGCYKKGNV 93
Query: 77 YDNV--VRVDLDHLNDI-RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY 133
D + ++ +++ D R A+ + K IA+ GDF AI ++ Y
Sbjct: 94 IDAITCLKAAIEYYTDEGRFAIS-------AKHQKEIAELYEAEGDFDQAIASYQIASDY 146
Query: 134 QDAFN 138
D N
Sbjct: 147 FDGEN 151
>sp|Q8U0P3|REG6_PYRFU Uncharacterized HTH-type transcriptional regulator PF1543
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=PF1543 PE=4 SV=1
Length = 151
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 107
+Y++ + Y E V YE DYD VV++ + ++ + +D+V + + EG
Sbjct: 79 KYSEVASKLVKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDMVGSIEGVEGT 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,116,961
Number of Sequences: 539616
Number of extensions: 2901455
Number of successful extensions: 7298
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7279
Number of HSP's gapped (non-prelim): 39
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)