Query psy12373
Match_columns 198
No_of_seqs 150 out of 649
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:29:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3617|consensus 99.9 2.4E-27 5.2E-32 210.5 14.6 188 6-197 813-1062(1416)
2 KOG3617|consensus 99.9 2.4E-25 5.1E-30 197.9 13.4 189 7-197 913-1120(1416)
3 KOG3616|consensus 99.8 2.5E-20 5.5E-25 165.0 14.0 191 6-197 837-1061(1636)
4 KOG1538|consensus 99.8 1.4E-19 3.1E-24 158.2 13.5 176 6-195 645-842 (1081)
5 KOG2041|consensus 99.8 3.9E-18 8.5E-23 150.3 16.4 191 4-195 745-948 (1189)
6 KOG3616|consensus 99.8 7.6E-18 1.6E-22 149.5 15.0 190 7-197 662-864 (1636)
7 KOG2041|consensus 99.7 1.3E-15 2.8E-20 134.6 13.6 135 7-142 810-948 (1189)
8 KOG1538|consensus 99.6 7.6E-15 1.6E-19 129.0 10.4 138 7-145 704-845 (1081)
9 KOG1920|consensus 99.1 1.7E-09 3.7E-14 100.7 13.9 147 6-153 893-1062(1265)
10 PF14938 SNAP: Soluble NSF att 99.0 7.4E-09 1.6E-13 85.5 11.3 134 7-180 36-174 (282)
11 KOG1586|consensus 98.9 3.8E-09 8.3E-14 83.6 6.9 108 4-133 25-143 (288)
12 PF14938 SNAP: Soluble NSF att 98.8 4.2E-07 9.2E-12 75.0 15.3 139 8-195 30-180 (282)
13 PLN03081 pentatricopeptide (PP 98.8 1.1E-06 2.3E-11 81.1 18.8 104 24-128 264-384 (697)
14 TIGR02917 PEP_TPR_lipo putativ 98.7 2.8E-06 6.1E-11 78.3 20.0 103 27-130 439-559 (899)
15 PLN03218 maturation of RBCL 1; 98.7 5E-06 1.1E-10 79.7 21.0 21 160-180 718-738 (1060)
16 PLN03218 maturation of RBCL 1; 98.7 5.8E-06 1.3E-10 79.3 21.1 38 157-194 680-743 (1060)
17 PF04053 Coatomer_WDAD: Coatom 98.7 2.7E-06 5.9E-11 74.4 17.5 160 31-198 273-443 (443)
18 TIGR00990 3a0801s09 mitochondr 98.7 4.5E-06 9.8E-11 75.9 19.5 173 7-180 345-561 (615)
19 PF04053 Coatomer_WDAD: Coatom 98.6 1.4E-06 3E-11 76.3 15.1 132 9-144 298-442 (443)
20 TIGR02917 PEP_TPR_lipo putativ 98.6 8.1E-06 1.8E-10 75.3 20.4 23 158-180 767-789 (899)
21 KOG2247|consensus 98.6 3.7E-10 8.1E-15 97.1 -7.6 178 7-195 186-368 (615)
22 PF13429 TPR_15: Tetratricopep 98.6 2.9E-07 6.3E-12 75.5 9.6 151 6-180 90-267 (280)
23 PRK11788 tetratricopeptide rep 98.6 9E-06 2E-10 69.2 18.8 154 26-180 114-301 (389)
24 PLN03077 Protein ECB2; Provisi 98.6 5E-06 1.1E-10 78.4 17.4 52 23-74 226-279 (857)
25 PLN03081 pentatricopeptide (PP 98.5 5.7E-06 1.2E-10 76.3 17.2 157 23-180 364-547 (697)
26 PRK15174 Vi polysaccharide exp 98.5 2.7E-05 5.9E-10 71.5 21.3 123 7-130 90-238 (656)
27 PRK11788 tetratricopeptide rep 98.5 2.3E-05 5E-10 66.7 18.9 173 7-180 49-268 (389)
28 KOG0985|consensus 98.5 1.5E-05 3.3E-10 74.3 17.9 91 7-98 1062-1156(1666)
29 PRK11447 cellulose synthase su 98.5 1.4E-05 3.1E-10 77.7 18.7 154 26-180 502-690 (1157)
30 PLN03077 Protein ECB2; Provisi 98.4 3.4E-05 7.4E-10 72.8 19.8 51 48-99 424-479 (857)
31 COG2956 Predicted N-acetylgluc 98.4 1.8E-05 3.8E-10 65.7 14.6 130 50-180 109-268 (389)
32 KOG0276|consensus 98.4 7.5E-06 1.6E-10 72.6 12.1 147 31-197 598-748 (794)
33 PRK15174 Vi polysaccharide exp 98.3 0.00013 2.8E-09 67.1 20.6 152 26-180 151-337 (656)
34 PF13429 TPR_15: Tetratricopep 98.3 9.6E-07 2.1E-11 72.4 5.4 132 47-180 77-233 (280)
35 PRK11447 cellulose synthase su 98.3 0.00012 2.7E-09 71.2 20.4 77 52-129 465-554 (1157)
36 KOG2003|consensus 98.3 4.9E-05 1.1E-09 65.9 14.9 130 19-180 537-679 (840)
37 TIGR00990 3a0801s09 mitochondr 98.2 0.00017 3.6E-09 65.7 18.6 156 19-180 307-486 (615)
38 KOG1920|consensus 98.2 2.2E-05 4.9E-10 74.0 12.4 95 7-102 953-1053(1265)
39 TIGR02521 type_IV_pilW type IV 98.2 0.00022 4.9E-09 55.0 16.5 109 13-130 38-161 (234)
40 KOG4626|consensus 98.2 6.8E-05 1.5E-09 67.1 14.3 132 48-180 252-407 (966)
41 KOG1840|consensus 98.1 0.00011 2.4E-09 65.2 14.6 168 12-180 247-469 (508)
42 PRK10747 putative protoheme IX 98.1 0.00097 2.1E-08 57.7 19.8 174 6-180 131-347 (398)
43 TIGR02521 type_IV_pilW type IV 98.1 0.00045 9.8E-09 53.2 15.8 151 6-180 44-222 (234)
44 KOG4626|consensus 98.0 0.00013 2.8E-09 65.4 13.3 166 14-180 260-475 (966)
45 PRK09782 bacteriophage N4 rece 98.0 0.00082 1.8E-08 64.4 18.9 148 31-180 521-696 (987)
46 KOG0985|consensus 98.0 0.00096 2.1E-08 62.8 17.5 139 11-152 989-1155(1666)
47 KOG1840|consensus 97.9 0.0002 4.2E-09 63.7 12.7 145 12-180 205-386 (508)
48 PF09976 TPR_21: Tetratricopep 97.9 0.0011 2.4E-08 49.0 14.7 99 31-130 23-144 (145)
49 PRK09782 bacteriophage N4 rece 97.9 0.004 8.6E-08 59.8 21.1 131 49-180 510-662 (987)
50 PRK10747 putative protoheme IX 97.8 0.0034 7.3E-08 54.3 18.2 149 31-180 96-282 (398)
51 PRK11189 lipoprotein NlpI; Pro 97.8 0.0014 3.1E-08 54.4 15.1 158 13-180 71-255 (296)
52 KOG0276|consensus 97.8 0.00045 9.8E-09 61.7 12.3 130 19-153 637-769 (794)
53 KOG1586|consensus 97.8 0.00059 1.3E-08 54.5 11.6 48 49-97 114-176 (288)
54 PRK15179 Vi polysaccharide bio 97.7 0.0019 4.2E-08 59.7 15.4 143 8-180 51-207 (694)
55 TIGR00540 hemY_coli hemY prote 97.7 0.0077 1.7E-07 52.3 18.4 174 7-180 132-354 (409)
56 PRK10049 pgaA outer membrane p 97.7 0.022 4.8E-07 53.5 22.1 123 7-130 29-176 (765)
57 PF13424 TPR_12: Tetratricopep 97.6 0.00037 8E-09 45.8 7.5 69 48-131 5-73 (78)
58 PF00637 Clathrin: Region in C 97.6 2.6E-06 5.6E-11 62.9 -3.5 96 22-119 45-140 (143)
59 KOG2003|consensus 97.6 0.0008 1.7E-08 58.5 10.7 83 20-132 504-586 (840)
60 smart00299 CLH Clathrin heavy 97.6 0.002 4.2E-08 47.3 11.3 63 53-115 74-136 (140)
61 PRK12370 invasion protein regu 97.5 0.0026 5.7E-08 57.4 13.7 65 35-100 320-397 (553)
62 KOG1585|consensus 97.5 0.0012 2.6E-08 53.1 9.8 97 17-130 29-136 (308)
63 KOG2114|consensus 97.5 0.0048 1E-07 57.1 14.6 125 21-146 336-492 (933)
64 PRK15359 type III secretion sy 97.5 0.0019 4.2E-08 47.8 10.2 87 14-130 32-118 (144)
65 PRK10803 tol-pal system protei 97.4 0.0045 9.7E-08 50.8 12.5 99 7-130 144-243 (263)
66 TIGR03302 OM_YfiO outer membra 97.4 0.013 2.8E-07 46.4 14.8 123 49-180 71-222 (235)
67 smart00299 CLH Clathrin heavy 97.3 0.016 3.4E-07 42.4 13.0 64 108-173 73-137 (140)
68 PRK12370 invasion protein regu 97.2 0.013 2.8E-07 52.9 14.5 124 7-131 318-468 (553)
69 PF04840 Vps16_C: Vps16, C-ter 97.2 0.021 4.5E-07 48.2 14.7 103 58-162 187-307 (319)
70 TIGR00540 hemY_coli hemY prote 97.2 0.036 7.8E-07 48.1 16.7 151 29-180 94-282 (409)
71 TIGR02552 LcrH_SycD type III s 97.2 0.0034 7.5E-08 45.2 8.7 88 13-130 24-111 (135)
72 KOG2114|consensus 97.2 0.039 8.4E-07 51.3 16.8 137 7-145 369-530 (933)
73 PRK10049 pgaA outer membrane p 97.2 0.033 7.2E-07 52.3 17.0 115 7-131 16-143 (765)
74 PF12895 Apc3: Anaphase-promot 97.2 0.0037 8E-08 41.7 8.0 60 48-130 25-84 (84)
75 PRK15363 pathogenicity island 97.2 0.0047 1E-07 46.6 9.1 83 18-130 47-129 (157)
76 COG3063 PilF Tfp pilus assembl 97.2 0.013 2.7E-07 46.9 11.8 100 46-146 101-223 (250)
77 PRK15363 pathogenicity island 97.1 0.011 2.5E-07 44.5 11.1 100 47-193 34-133 (157)
78 KOG1126|consensus 97.1 0.0058 1.3E-07 55.0 10.9 169 11-180 358-576 (638)
79 PRK10370 formate-dependent nit 97.1 0.041 9E-07 43.0 14.5 87 45-132 70-172 (198)
80 KOG1585|consensus 97.1 0.0094 2E-07 48.2 10.6 129 4-136 29-182 (308)
81 PF13432 TPR_16: Tetratricopep 97.1 0.0023 5E-08 40.3 6.0 53 13-74 4-57 (65)
82 PLN03088 SGT1, suppressor of 97.1 0.011 2.4E-07 50.4 12.0 93 8-131 5-97 (356)
83 PF13414 TPR_11: TPR repeat; P 97.1 0.0032 6.9E-08 40.1 6.7 62 47-130 2-64 (69)
84 PRK15359 type III secretion sy 97.1 0.0084 1.8E-07 44.4 9.6 88 48-180 24-111 (144)
85 KOG1155|consensus 97.0 0.011 2.4E-07 51.6 10.7 114 50-180 400-526 (559)
86 PF12895 Apc3: Anaphase-promot 97.0 0.0023 5E-08 42.7 5.4 69 6-74 2-84 (84)
87 KOG0547|consensus 97.0 0.026 5.6E-07 49.7 12.9 171 8-180 348-556 (606)
88 PF13424 TPR_12: Tetratricopep 96.9 0.0027 5.8E-08 41.6 5.3 64 9-74 8-72 (78)
89 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.018 3.9E-07 40.0 9.5 83 27-129 10-101 (119)
90 COG3063 PilF Tfp pilus assembl 96.8 0.085 1.9E-06 42.3 13.4 145 8-180 30-192 (250)
91 PF10602 RPN7: 26S proteasome 96.7 0.015 3.2E-07 44.8 8.9 85 47-132 35-141 (177)
92 COG4783 Putative Zn-dependent 96.7 0.095 2.1E-06 46.0 14.5 66 106-194 376-449 (484)
93 PF00637 Clathrin: Region in C 96.7 0.00028 6.1E-09 51.9 -0.8 94 80-177 48-141 (143)
94 KOG1155|consensus 96.7 0.019 4.2E-07 50.2 10.1 99 11-132 437-535 (559)
95 PF12569 NARP1: NMDA receptor- 96.7 0.031 6.6E-07 50.2 11.6 72 28-100 203-287 (517)
96 PRK02603 photosystem I assembl 96.6 0.14 3E-06 38.8 13.8 56 13-74 42-98 (172)
97 PF12688 TPR_5: Tetratrico pep 96.6 0.038 8.2E-07 39.9 9.8 79 49-128 2-99 (120)
98 PF04097 Nic96: Nup93/Nic96; 96.6 0.069 1.5E-06 49.0 13.7 140 49-195 329-530 (613)
99 KOG2376|consensus 96.6 0.12 2.7E-06 46.4 14.6 163 6-180 59-243 (652)
100 PF12688 TPR_5: Tetratrico pep 96.5 0.077 1.7E-06 38.3 11.0 102 11-128 6-117 (120)
101 COG5290 IkappaB kinase complex 96.5 0.06 1.3E-06 50.0 12.5 120 31-152 903-1043(1243)
102 KOG1126|consensus 96.5 0.033 7.2E-07 50.3 10.7 136 11-180 426-610 (638)
103 cd00189 TPR Tetratricopeptide 96.5 0.029 6.4E-07 35.8 8.1 88 13-130 7-94 (100)
104 KOG1524|consensus 96.5 0.041 8.8E-07 48.9 10.7 115 29-146 583-699 (737)
105 PRK02603 photosystem I assembl 96.5 0.1 2.2E-06 39.5 11.9 64 47-129 34-97 (172)
106 TIGR02552 LcrH_SycD type III s 96.5 0.051 1.1E-06 39.0 9.8 89 47-180 16-104 (135)
107 PF13414 TPR_11: TPR repeat; P 96.4 0.007 1.5E-07 38.5 4.5 57 10-74 7-64 (69)
108 CHL00033 ycf3 photosystem I as 96.4 0.1 2.2E-06 39.3 11.7 55 14-74 43-98 (168)
109 PF13432 TPR_16: Tetratricopep 96.3 0.016 3.6E-07 36.3 5.8 55 53-130 2-57 (65)
110 PRK15179 Vi polysaccharide bio 96.3 0.064 1.4E-06 49.8 11.7 84 47-130 119-214 (694)
111 PF12569 NARP1: NMDA receptor- 96.3 0.068 1.5E-06 48.0 11.5 120 52-194 198-329 (517)
112 KOG0547|consensus 96.3 0.046 1E-06 48.2 10.0 85 47-132 461-565 (606)
113 PF04840 Vps16_C: Vps16, C-ter 96.3 0.042 9.1E-07 46.3 9.7 117 22-144 180-302 (319)
114 KOG2002|consensus 96.3 0.23 4.9E-06 47.1 14.8 153 27-180 278-471 (1018)
115 PF09976 TPR_21: Tetratricopep 96.2 0.028 6E-07 41.5 7.5 47 50-97 87-140 (145)
116 KOG0495|consensus 96.2 0.19 4E-06 46.1 13.7 171 7-180 632-836 (913)
117 COG2956 Predicted N-acetylgluc 96.1 0.28 6E-06 41.4 13.3 125 7-132 121-277 (389)
118 COG5290 IkappaB kinase complex 96.0 0.35 7.7E-06 45.2 14.4 136 7-146 936-1082(1243)
119 KOG0553|consensus 96.0 0.044 9.5E-07 45.3 8.0 92 51-143 84-195 (304)
120 PRK14720 transcript cleavage f 96.0 0.21 4.6E-06 47.6 13.5 113 13-141 123-247 (906)
121 KOG1129|consensus 95.9 0.55 1.2E-05 39.8 14.3 174 6-180 236-448 (478)
122 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.15 3.1E-06 35.3 9.8 69 6-74 15-102 (119)
123 KOG2076|consensus 95.9 0.062 1.3E-06 50.2 9.6 107 62-180 141-260 (895)
124 PRK14574 hmsH outer membrane p 95.9 0.21 4.6E-06 47.4 13.3 23 53-75 73-95 (822)
125 KOG1125|consensus 95.9 0.015 3.3E-07 51.7 5.3 86 15-130 439-524 (579)
126 cd00189 TPR Tetratricopeptide 95.9 0.09 1.9E-06 33.4 8.0 85 51-180 3-87 (100)
127 KOG2076|consensus 95.9 0.32 6.9E-06 45.7 13.8 58 7-74 141-199 (895)
128 KOG2247|consensus 95.9 0.00064 1.4E-08 59.4 -3.2 167 6-175 58-241 (615)
129 COG3071 HemY Uncharacterized e 95.9 1 2.2E-05 38.7 18.1 173 7-180 98-347 (400)
130 cd05804 StaR_like StaR_like; a 95.8 0.52 1.1E-05 39.4 14.4 82 49-131 115-213 (355)
131 PRK14574 hmsH outer membrane p 95.8 1.2 2.7E-05 42.3 17.9 69 7-75 48-129 (822)
132 COG1729 Uncharacterized protei 95.8 0.21 4.5E-06 40.8 11.2 96 8-129 144-240 (262)
133 PF12234 Rav1p_C: RAVE protein 95.8 0.81 1.8E-05 42.1 16.1 95 50-144 454-555 (631)
134 PRK11189 lipoprotein NlpI; Pro 95.8 0.25 5.3E-06 41.0 12.0 28 48-75 64-91 (296)
135 KOG1128|consensus 95.8 0.16 3.4E-06 46.8 11.4 123 7-130 412-545 (777)
136 PRK10866 outer membrane biogen 95.7 0.84 1.8E-05 36.9 15.7 158 7-180 34-231 (243)
137 PF13176 TPR_7: Tetratricopept 95.7 0.022 4.8E-07 31.7 3.8 24 51-74 2-25 (36)
138 PF12931 Sec16_C: Sec23-bindin 95.7 0.26 5.6E-06 40.8 11.6 165 15-180 4-217 (284)
139 KOG0686|consensus 95.5 0.4 8.8E-06 41.5 12.3 84 48-132 150-257 (466)
140 PF09295 ChAPs: ChAPs (Chs5p-A 95.5 0.43 9.4E-06 41.4 12.8 108 49-180 170-287 (395)
141 PLN03088 SGT1, suppressor of 95.4 0.19 4.2E-06 42.9 10.2 85 51-180 5-89 (356)
142 PF14559 TPR_19: Tetratricopep 95.4 0.063 1.4E-06 33.7 5.5 48 18-74 3-51 (68)
143 KOG1173|consensus 95.3 0.43 9.4E-06 42.8 12.2 130 20-180 360-508 (611)
144 cd05804 StaR_like StaR_like; a 95.3 1.4 3E-05 36.8 15.1 163 12-180 12-205 (355)
145 PRK10370 formate-dependent nit 95.3 0.83 1.8E-05 35.6 12.8 78 103-180 72-163 (198)
146 KOG1173|consensus 95.3 0.14 3E-06 45.9 8.9 63 47-131 454-516 (611)
147 KOG0543|consensus 95.3 0.15 3.3E-06 43.8 8.9 84 49-133 209-320 (397)
148 KOG0292|consensus 95.2 0.15 3.2E-06 48.0 9.3 118 32-153 656-776 (1202)
149 PRK10803 tol-pal system protei 95.2 0.34 7.4E-06 39.7 10.7 83 77-180 146-236 (263)
150 PF07719 TPR_2: Tetratricopept 95.2 0.064 1.4E-06 28.8 4.6 27 48-74 1-27 (34)
151 CHL00033 ycf3 photosystem I as 95.2 0.5 1.1E-05 35.5 11.0 65 48-131 35-99 (168)
152 TIGR03302 OM_YfiO outer membra 95.2 0.31 6.7E-06 38.4 10.2 117 7-130 47-192 (235)
153 PF13371 TPR_9: Tetratricopept 95.1 0.13 2.8E-06 32.8 6.5 52 15-74 4-55 (73)
154 KOG1129|consensus 95.1 1.1 2.4E-05 38.0 13.2 116 54-180 229-377 (478)
155 KOG2005|consensus 95.0 1.1 2.4E-05 41.3 13.9 124 12-136 184-318 (878)
156 PRK04841 transcriptional regul 94.9 1.8 4E-05 41.1 16.1 123 7-130 342-517 (903)
157 COG5110 RPN1 26S proteasome re 94.8 1.2 2.7E-05 40.1 13.3 127 11-138 185-321 (881)
158 PF09295 ChAPs: ChAPs (Chs5p-A 94.7 0.7 1.5E-05 40.2 11.8 99 25-124 175-288 (395)
159 KOG3785|consensus 94.7 0.45 9.7E-06 40.8 10.0 117 10-133 340-484 (557)
160 COG3071 HemY Uncharacterized e 94.6 0.3 6.5E-06 41.9 9.0 97 11-130 268-387 (400)
161 KOG0553|consensus 94.5 0.15 3.4E-06 42.2 6.7 69 7-75 95-176 (304)
162 COG5010 TadD Flp pilus assembl 94.4 1.8 4E-05 35.2 12.7 87 46-132 98-196 (257)
163 KOG0548|consensus 94.4 0.68 1.5E-05 41.3 10.9 76 54-130 304-384 (539)
164 PF14559 TPR_19: Tetratricopep 94.4 0.21 4.5E-06 31.3 6.0 27 103-129 24-50 (68)
165 PRK15331 chaperone protein Sic 94.3 0.3 6.5E-06 37.1 7.6 90 10-130 42-131 (165)
166 PRK04841 transcriptional regul 94.3 2.8 6.1E-05 39.8 15.8 81 50-131 533-639 (903)
167 PF00515 TPR_1: Tetratricopept 94.2 0.16 3.5E-06 27.3 4.6 26 49-74 2-27 (34)
168 PF13428 TPR_14: Tetratricopep 94.1 0.12 2.5E-06 30.0 3.9 27 48-74 1-27 (44)
169 PF13176 TPR_7: Tetratricopept 94.0 0.11 2.3E-06 28.9 3.6 22 108-129 3-24 (36)
170 PF04733 Coatomer_E: Coatomer 93.9 0.17 3.7E-06 42.1 6.0 45 55-100 109-156 (290)
171 KOG3060|consensus 93.9 3.1 6.6E-05 34.1 15.6 28 47-74 85-112 (289)
172 PF04097 Nic96: Nup93/Nic96; 93.7 0.33 7.1E-06 44.6 8.1 39 48-86 414-452 (613)
173 PRK15331 chaperone protein Sic 93.7 0.48 1.1E-05 36.0 7.6 87 49-180 38-124 (165)
174 PF04733 Coatomer_E: Coatomer 93.6 2.1 4.6E-05 35.5 12.1 49 27-75 110-158 (290)
175 KOG1130|consensus 93.6 0.62 1.3E-05 40.7 8.9 67 47-129 234-300 (639)
176 PF13181 TPR_8: Tetratricopept 93.5 0.27 5.8E-06 26.3 4.6 26 49-74 2-27 (34)
177 KOG2066|consensus 93.5 1.8 3.9E-05 40.4 12.1 67 58-124 644-710 (846)
178 KOG2168|consensus 93.5 0.67 1.4E-05 43.5 9.6 39 47-85 621-659 (835)
179 PRK14720 transcript cleavage f 93.5 2.5 5.4E-05 40.6 13.5 126 22-180 34-168 (906)
180 KOG0624|consensus 93.3 4.2 9.1E-05 34.9 13.1 48 122-180 312-360 (504)
181 COG2909 MalT ATP-dependent tra 93.3 3.1 6.7E-05 39.5 13.4 129 8-145 349-532 (894)
182 KOG0550|consensus 93.2 0.86 1.9E-05 39.6 9.2 83 53-136 254-353 (486)
183 KOG2376|consensus 93.0 5.3 0.00011 36.4 14.1 152 27-180 20-194 (652)
184 KOG0307|consensus 92.9 2.3 4.9E-05 41.0 12.2 132 60-193 486-624 (1049)
185 KOG2066|consensus 92.4 5 0.00011 37.6 13.3 31 47-77 504-534 (846)
186 KOG2280|consensus 92.3 3.4 7.5E-05 38.5 12.2 145 7-153 639-806 (829)
187 KOG2002|consensus 92.3 0.37 8E-06 45.7 6.2 80 33-132 660-744 (1018)
188 PF13374 TPR_10: Tetratricopep 92.3 0.49 1.1E-05 26.3 4.7 31 49-85 3-33 (42)
189 PF13525 YfiO: Outer membrane 92.3 4.4 9.5E-05 31.5 14.4 61 7-74 7-68 (203)
190 KOG2168|consensus 92.2 0.79 1.7E-05 43.0 8.2 37 107-143 625-661 (835)
191 COG4783 Putative Zn-dependent 92.1 2.6 5.7E-05 37.3 10.8 123 20-144 308-452 (484)
192 PF13371 TPR_9: Tetratricopept 91.9 0.66 1.4E-05 29.3 5.5 26 105-130 30-55 (73)
193 PLN03098 LPA1 LOW PSII ACCUMUL 91.7 1.2 2.5E-05 39.3 8.3 28 47-74 74-101 (453)
194 KOG0543|consensus 91.5 1 2.2E-05 38.9 7.6 51 24-74 262-317 (397)
195 KOG1064|consensus 91.5 1.5 3.2E-05 44.7 9.4 133 11-143 1219-1377(2439)
196 KOG1127|consensus 91.4 3.1 6.8E-05 40.1 11.2 52 48-100 492-551 (1238)
197 KOG4162|consensus 91.4 3 6.5E-05 38.9 10.8 111 11-130 655-780 (799)
198 PF13428 TPR_14: Tetratricopep 91.2 0.35 7.6E-06 27.9 3.3 25 106-130 3-27 (44)
199 PF10602 RPN7: 26S proteasome 91.2 2.7 5.8E-05 32.3 9.1 46 107-152 39-95 (177)
200 KOG1174|consensus 90.9 2.9 6.3E-05 36.6 9.7 125 7-132 348-499 (564)
201 PF12931 Sec16_C: Sec23-bindin 90.8 4.4 9.6E-05 33.5 10.6 116 68-185 2-144 (284)
202 PF07719 TPR_2: Tetratricopept 90.5 0.68 1.5E-05 24.5 3.9 25 106-130 3-27 (34)
203 KOG0307|consensus 90.4 12 0.00026 36.3 14.1 171 7-180 488-684 (1049)
204 KOG2005|consensus 90.3 2.6 5.7E-05 38.9 9.3 107 66-175 183-295 (878)
205 COG5110 RPN1 26S proteasome re 90.2 2.5 5.5E-05 38.3 9.0 109 66-177 185-299 (881)
206 KOG2034|consensus 89.9 5.5 0.00012 37.8 11.2 81 4-96 356-437 (911)
207 KOG4121|consensus 89.6 6.6 0.00014 37.9 11.6 110 53-195 777-891 (1128)
208 COG4700 Uncharacterized protei 89.4 8.7 0.00019 30.3 10.4 77 47-124 123-213 (251)
209 PF03704 BTAD: Bacterial trans 89.2 1.9 4.2E-05 31.3 6.7 28 47-74 95-122 (146)
210 KOG1125|consensus 89.1 0.68 1.5E-05 41.6 4.7 64 46-132 428-492 (579)
211 PF10300 DUF3808: Protein of u 88.8 6.4 0.00014 35.0 10.7 59 12-74 273-331 (468)
212 KOG2280|consensus 88.5 2.4 5.1E-05 39.5 7.8 112 25-140 690-806 (829)
213 PF13431 TPR_17: Tetratricopep 88.5 0.96 2.1E-05 24.7 3.5 26 44-69 9-34 (34)
214 PF07035 Mic1: Colon cancer-as 88.3 9.7 0.00021 29.1 10.9 64 112-175 83-150 (167)
215 KOG1174|consensus 88.2 18 0.00038 32.0 14.8 118 51-180 337-490 (564)
216 PF11207 DUF2989: Protein of u 88.2 11 0.00024 29.7 11.0 58 103-180 140-197 (203)
217 PF09205 DUF1955: Domain of un 88.1 6.1 0.00013 29.3 8.3 113 17-130 13-146 (161)
218 KOG4340|consensus 87.7 7.6 0.00016 32.8 9.6 84 18-103 9-106 (459)
219 PF00515 TPR_1: Tetratricopept 87.6 1.5 3.2E-05 23.3 3.9 24 107-130 4-27 (34)
220 PF13174 TPR_6: Tetratricopept 87.4 1 2.2E-05 23.6 3.2 25 50-74 2-26 (33)
221 KOG2300|consensus 87.3 11 0.00025 33.7 10.9 120 18-138 335-479 (629)
222 PF13525 YfiO: Outer membrane 87.3 7.4 0.00016 30.2 9.2 132 47-180 4-160 (203)
223 PF04190 DUF410: Protein of un 87.1 15 0.00032 30.0 11.9 39 100-138 86-124 (260)
224 COG5010 TadD Flp pilus assembl 86.9 16 0.00034 29.9 11.0 100 28-129 109-227 (257)
225 KOG1915|consensus 86.7 16 0.00036 32.7 11.5 93 35-130 130-233 (677)
226 PF13512 TPR_18: Tetratricopep 86.5 6.9 0.00015 29.0 8.0 66 8-85 13-78 (142)
227 KOG4162|consensus 86.4 30 0.00064 32.7 13.7 46 150-195 502-572 (799)
228 PF07035 Mic1: Colon cancer-as 86.4 13 0.00028 28.4 11.5 80 21-101 31-115 (167)
229 COG1729 Uncharacterized protei 86.2 7.6 0.00017 31.8 8.9 57 104-180 178-234 (262)
230 KOG3081|consensus 86.2 15 0.00033 30.3 10.4 23 158-180 204-226 (299)
231 PF13181 TPR_8: Tetratricopept 86.1 1.9 4.1E-05 22.8 3.8 26 107-132 4-29 (34)
232 KOG2047|consensus 85.9 8.6 0.00019 35.6 9.7 99 44-147 507-626 (835)
233 PRK10153 DNA-binding transcrip 85.8 4.5 9.7E-05 36.5 8.1 44 89-132 434-481 (517)
234 smart00028 TPR Tetratricopepti 85.7 1.6 3.4E-05 21.5 3.3 26 49-74 2-27 (34)
235 PF10366 Vps39_1: Vacuolar sor 85.1 5.5 0.00012 28.0 6.7 62 81-145 6-67 (108)
236 PLN03098 LPA1 LOW PSII ACCUMUL 84.8 3.7 8E-05 36.2 6.8 56 13-76 82-140 (453)
237 KOG3785|consensus 84.7 12 0.00026 32.4 9.5 55 48-103 57-119 (557)
238 KOG2034|consensus 84.6 26 0.00056 33.5 12.4 69 111-180 668-740 (911)
239 PF10579 Rapsyn_N: Rapsyn N-te 84.4 7 0.00015 26.0 6.4 60 8-74 9-69 (80)
240 PF12854 PPR_1: PPR repeat 84.3 2.1 4.5E-05 23.3 3.4 22 120-141 10-31 (34)
241 PRK11619 lytic murein transgly 84.3 34 0.00074 31.8 13.2 107 26-133 319-468 (644)
242 PF13934 ELYS: Nuclear pore co 84.0 12 0.00025 29.9 9.0 50 50-100 80-133 (226)
243 KOG0687|consensus 83.5 10 0.00022 32.2 8.5 67 13-81 111-181 (393)
244 KOG0495|consensus 83.4 24 0.00052 33.0 11.3 52 47-99 718-777 (913)
245 PF08631 SPO22: Meiosis protei 83.2 12 0.00026 30.7 9.0 60 60-133 5-65 (278)
246 COG4235 Cytochrome c biogenesi 83.1 8.5 0.00018 32.0 7.9 75 104-180 156-246 (287)
247 PF03704 BTAD: Bacterial trans 83.0 15 0.00033 26.5 10.4 22 122-143 101-122 (146)
248 KOG1156|consensus 82.9 29 0.00063 32.1 11.7 75 53-128 376-463 (700)
249 PF12234 Rav1p_C: RAVE protein 82.8 41 0.00088 31.3 15.7 161 34-195 367-553 (631)
250 KOG2047|consensus 82.4 10 0.00022 35.1 8.7 115 38-155 576-719 (835)
251 COG2909 MalT ATP-dependent tra 82.4 37 0.00081 32.6 12.5 39 47-85 346-384 (894)
252 KOG0624|consensus 82.4 32 0.00069 29.8 11.3 24 102-125 221-244 (504)
253 PF04212 MIT: MIT (microtubule 81.9 3.8 8.3E-05 26.0 4.5 24 51-74 8-31 (69)
254 PF13374 TPR_10: Tetratricopep 81.8 3.3 7E-05 22.7 3.7 24 107-130 5-28 (42)
255 COG2976 Uncharacterized protei 81.8 15 0.00033 28.8 8.4 81 52-133 93-188 (207)
256 PRK10866 outer membrane biogen 80.9 12 0.00026 30.2 8.0 29 47-75 31-59 (243)
257 KOG1524|consensus 80.8 14 0.0003 33.5 8.7 51 52-103 648-698 (737)
258 KOG3060|consensus 80.7 8.1 0.00018 31.7 6.8 20 13-32 93-112 (289)
259 KOG1128|consensus 80.3 3 6.5E-05 38.7 4.7 79 47-126 397-479 (777)
260 KOG1130|consensus 79.7 12 0.00025 33.1 7.8 67 48-130 275-341 (639)
261 KOG1941|consensus 79.5 42 0.0009 29.3 11.9 40 35-74 145-188 (518)
262 PF04190 DUF410: Protein of un 79.4 33 0.00071 28.0 12.6 24 157-180 86-109 (260)
263 PF13431 TPR_17: Tetratricopep 79.0 3.4 7.4E-05 22.4 3.0 23 158-180 10-32 (34)
264 KOG0548|consensus 78.9 20 0.00044 32.3 9.2 122 12-134 304-456 (539)
265 PF09205 DUF1955: Domain of un 78.9 13 0.00028 27.7 6.7 57 18-74 68-146 (161)
266 PF07721 TPR_4: Tetratricopept 78.5 4.8 0.0001 20.3 3.4 23 50-72 3-25 (26)
267 PF12862 Apc5: Anaphase-promot 77.8 10 0.00022 25.7 5.8 67 17-90 9-76 (94)
268 PF12862 Apc5: Anaphase-promot 77.4 19 0.00041 24.2 7.9 36 107-148 44-79 (94)
269 PF11817 Foie-gras_1: Foie gra 76.4 38 0.00083 27.2 11.7 40 49-95 179-218 (247)
270 KOG3024|consensus 76.2 23 0.00049 29.6 8.2 121 14-139 21-162 (312)
271 PRK10153 DNA-binding transcrip 76.0 16 0.00034 33.0 8.0 44 31-74 432-479 (517)
272 PF07079 DUF1347: Protein of u 76.0 24 0.00052 31.4 8.7 39 160-198 494-544 (549)
273 PF10300 DUF3808: Protein of u 75.6 23 0.0005 31.5 8.9 27 50-76 269-295 (468)
274 PF04858 TH1: TH1 protein; In 75.6 59 0.0013 29.9 11.5 81 59-153 118-199 (584)
275 PF13812 PPR_3: Pentatricopept 75.0 6.4 0.00014 20.5 3.4 22 120-141 4-25 (34)
276 KOG4642|consensus 74.6 11 0.00025 30.6 6.0 88 55-143 17-129 (284)
277 PF01535 PPR: PPR repeat; Int 73.3 5.7 0.00012 20.1 2.9 22 121-142 4-25 (31)
278 PF10366 Vps39_1: Vacuolar sor 73.2 29 0.00063 24.3 7.6 63 25-90 5-67 (108)
279 KOG4121|consensus 73.2 78 0.0017 31.0 11.8 47 7-53 773-819 (1128)
280 COG4700 Uncharacterized protei 72.9 45 0.00098 26.4 12.2 109 47-180 88-212 (251)
281 KOG0292|consensus 72.8 9.6 0.00021 36.5 5.8 114 32-153 606-721 (1202)
282 PF04212 MIT: MIT (microtubule 72.8 9.9 0.00021 24.1 4.5 23 110-132 11-33 (69)
283 TIGR00756 PPR pentatricopeptid 72.2 8 0.00017 19.9 3.4 21 121-141 4-24 (35)
284 PF11207 DUF2989: Protein of u 72.2 46 0.001 26.2 9.6 22 102-123 176-197 (203)
285 PF08311 Mad3_BUB1_I: Mad3/BUB 72.0 7.2 0.00016 28.1 4.0 68 7-74 47-125 (126)
286 PF02064 MAS20: MAS20 protein 71.7 21 0.00045 25.7 6.3 49 53-111 68-116 (121)
287 cd02682 MIT_AAA_Arch MIT: doma 71.2 11 0.00023 24.8 4.3 29 51-85 9-37 (75)
288 KOG3824|consensus 71.2 11 0.00024 31.9 5.4 31 46-76 148-178 (472)
289 KOG4340|consensus 71.1 23 0.0005 30.0 7.2 17 129-145 90-106 (459)
290 PF07575 Nucleopor_Nup85: Nup8 71.0 15 0.00033 33.4 6.8 124 17-140 308-461 (566)
291 smart00777 Mad3_BUB1_I Mad3/BU 70.7 6.8 0.00015 28.4 3.6 27 47-73 98-124 (125)
292 PF05843 Suf: Suppressor of fo 68.7 55 0.0012 26.8 9.1 111 14-133 9-136 (280)
293 PF13041 PPR_2: PPR repeat fam 68.3 9.3 0.0002 22.2 3.4 23 120-142 6-28 (50)
294 KOG3081|consensus 68.1 69 0.0015 26.6 11.9 14 181-194 218-231 (299)
295 smart00745 MIT Microtubule Int 67.1 14 0.0003 23.8 4.3 27 53-85 13-39 (77)
296 cd02678 MIT_VPS4 MIT: domain c 67.1 14 0.0003 23.9 4.3 29 51-85 9-37 (75)
297 COG4235 Cytochrome c biogenesi 67.0 74 0.0016 26.5 9.8 30 46-75 154-183 (287)
298 KOG1156|consensus 66.3 77 0.0017 29.5 9.9 72 28-100 380-464 (700)
299 PF08625 Utp13: Utp13 specific 66.3 8.2 0.00018 28.6 3.4 35 66-101 2-36 (141)
300 COG3898 Uncharacterized membra 66.1 94 0.002 27.4 10.8 84 53-144 125-215 (531)
301 cd02577 PSTD1 PSTD1: Pseudouri 64.3 23 0.00051 29.9 6.1 39 60-99 161-206 (319)
302 cd02683 MIT_1 MIT: domain cont 64.2 16 0.00035 24.0 4.1 23 52-74 10-32 (77)
303 cd02681 MIT_calpain7_1 MIT: do 63.8 18 0.00039 23.8 4.3 24 51-74 9-32 (76)
304 cd02656 MIT MIT: domain contai 62.1 20 0.00044 23.0 4.3 22 53-74 11-32 (75)
305 PF13281 DUF4071: Domain of un 61.8 9.7 0.00021 32.9 3.4 13 181-193 316-328 (374)
306 PF00627 UBA: UBA/TS-N domain; 60.7 14 0.00031 20.3 2.9 24 1-28 12-36 (37)
307 PF08631 SPO22: Meiosis protei 60.5 70 0.0015 26.1 8.3 59 17-77 4-65 (278)
308 KOG3837|consensus 57.2 67 0.0014 28.3 7.6 94 6-100 108-250 (523)
309 PF04121 Nup84_Nup100: Nuclear 56.6 85 0.0018 29.5 8.9 76 15-94 142-241 (697)
310 smart00777 Mad3_BUB1_I Mad3/BU 56.0 75 0.0016 23.0 8.3 43 87-129 78-124 (125)
311 PF14555 UBA_4: UBA-like domai 55.3 25 0.00055 20.0 3.5 25 9-33 15-40 (43)
312 smart00685 DM14 Repeats in fly 55.3 36 0.00078 21.2 4.3 37 7-43 9-45 (59)
313 PF05843 Suf: Suppressor of fo 55.3 1.2E+02 0.0025 24.9 11.5 60 8-76 37-98 (280)
314 COG3118 Thioredoxin domain-con 55.2 1.3E+02 0.0027 25.3 11.3 27 47-73 167-193 (304)
315 KOG1941|consensus 54.5 95 0.002 27.2 8.0 25 50-74 124-148 (518)
316 PF11817 Foie-gras_1: Foie gra 54.0 67 0.0014 25.8 7.0 75 7-85 159-242 (247)
317 KOG0550|consensus 53.4 47 0.001 29.3 6.1 77 16-99 259-345 (486)
318 PF09986 DUF2225: Uncharacteri 53.1 1.1E+02 0.0024 24.1 8.5 69 48-129 118-190 (214)
319 PF07079 DUF1347: Protein of u 52.8 1.7E+02 0.0038 26.3 12.2 135 7-143 381-542 (549)
320 KOG4234|consensus 52.4 1.1E+02 0.0025 24.5 7.6 28 52-85 99-126 (271)
321 KOG1550|consensus 52.0 1.7E+02 0.0036 26.7 9.9 30 45-74 322-354 (552)
322 KOG0545|consensus 51.6 1.1E+02 0.0024 25.3 7.6 27 48-74 178-204 (329)
323 cd02576 PseudoU_synth_ScPUS7 P 51.3 48 0.001 28.5 6.0 36 7-42 171-212 (371)
324 PF04121 Nup84_Nup100: Nuclear 51.0 56 0.0012 30.7 6.8 19 175-193 213-234 (697)
325 PF02071 NSF: Aromatic-di-Alan 50.5 5.5 0.00012 16.6 0.1 9 67-75 1-9 (12)
326 cd02680 MIT_calpain7_2 MIT: do 49.3 33 0.00072 22.5 3.7 25 55-85 13-37 (75)
327 KOG2610|consensus 48.8 1.2E+02 0.0025 26.4 7.6 24 53-76 214-237 (491)
328 TIGR00985 3a0801s04tom mitocho 48.6 98 0.0021 23.1 6.5 46 53-108 95-141 (148)
329 cd02679 MIT_spastin MIT: domai 48.4 38 0.00083 22.4 3.9 21 54-74 14-34 (79)
330 PF06552 TOM20_plant: Plant sp 48.1 1.3E+02 0.0028 23.4 7.4 31 44-74 21-54 (186)
331 cd02684 MIT_2 MIT: domain cont 47.5 45 0.00097 21.7 4.1 27 53-85 11-37 (75)
332 PF08311 Mad3_BUB1_I: Mad3/BUB 47.3 1E+02 0.0022 22.0 7.0 52 79-130 67-125 (126)
333 PF07575 Nucleopor_Nup85: Nup8 47.0 31 0.00068 31.4 4.4 37 47-83 424-460 (566)
334 PF04910 Tcf25: Transcriptiona 46.9 65 0.0014 27.6 6.2 46 87-132 22-68 (360)
335 PF13512 TPR_18: Tetratricopep 46.5 1.2E+02 0.0026 22.5 8.3 29 47-75 9-37 (142)
336 PF07720 TPR_3: Tetratricopept 45.4 53 0.0011 18.1 3.9 22 50-71 3-24 (36)
337 PF10516 SHNi-TPR: SHNi-TPR; 44.9 52 0.0011 18.4 3.6 26 49-74 2-27 (38)
338 PF11768 DUF3312: Protein of u 44.8 49 0.0011 30.1 5.1 87 66-153 413-530 (545)
339 KOG3024|consensus 44.1 1.3E+02 0.0029 25.1 7.1 40 46-85 125-164 (312)
340 KOG0686|consensus 43.7 22 0.00049 31.1 2.8 28 9-36 153-180 (466)
341 cd02577 PSTD1 PSTD1: Pseudouri 43.6 68 0.0015 27.1 5.6 40 57-97 191-230 (319)
342 KOG4234|consensus 43.6 1.7E+02 0.0037 23.5 9.0 51 17-73 106-159 (271)
343 KOG0687|consensus 43.2 1.6E+02 0.0036 25.2 7.7 66 68-136 111-180 (393)
344 PF02259 FAT: FAT domain; Int 43.2 1.9E+02 0.004 23.8 11.0 51 24-74 151-210 (352)
345 PF09477 Type_III_YscG: Bacter 42.7 52 0.0011 23.4 4.0 17 164-180 25-41 (116)
346 COG2976 Uncharacterized protei 42.5 91 0.002 24.6 5.7 20 55-74 166-185 (207)
347 smart00668 CTLH C-terminal to 42.2 13 0.00028 22.2 0.9 20 179-198 10-29 (58)
348 PF12110 Nup96: Nuclear protei 41.3 1.1E+02 0.0024 25.3 6.5 27 116-142 11-37 (290)
349 TIGR03504 FimV_Cterm FimV C-te 41.3 52 0.0011 19.1 3.3 17 110-126 5-21 (44)
350 cd02677 MIT_SNX15 MIT: domain 41.3 56 0.0012 21.3 3.8 27 53-85 11-37 (75)
351 KOG1127|consensus 40.6 2.8E+02 0.0061 27.6 9.5 49 47-97 595-652 (1238)
352 PF12816 Vps8: Golgi CORVET co 40.1 88 0.0019 24.4 5.5 48 102-149 20-71 (196)
353 PF06552 TOM20_plant: Plant sp 40.0 1.8E+02 0.0039 22.6 7.3 37 47-83 68-109 (186)
354 PF09145 Ubiq-assoc: Ubiquitin 39.9 59 0.0013 19.0 3.2 32 54-85 10-41 (46)
355 KOG3824|consensus 39.6 1.4E+02 0.003 25.6 6.7 50 81-132 124-178 (472)
356 smart00685 DM14 Repeats in fly 39.2 96 0.0021 19.3 4.8 35 110-144 14-48 (59)
357 TIGR02508 type_III_yscG type I 39.2 46 0.00099 23.5 3.2 13 181-193 50-62 (115)
358 KOG2581|consensus 38.8 42 0.00091 29.5 3.6 52 79-131 214-274 (493)
359 KOG4648|consensus 38.5 86 0.0019 27.2 5.4 24 9-32 100-123 (536)
360 COG3118 Thioredoxin domain-con 38.5 2.4E+02 0.0052 23.7 13.2 24 157-180 232-255 (304)
361 PF00244 14-3-3: 14-3-3 protei 36.9 1.8E+02 0.0038 23.3 6.9 48 90-143 148-195 (236)
362 PF09986 DUF2225: Uncharacteri 36.9 1.3E+02 0.0029 23.7 6.1 28 47-74 164-191 (214)
363 KOG1064|consensus 35.9 4.3E+02 0.0092 28.4 10.3 85 111-196 1282-1377(2439)
364 PF10952 DUF2753: Protein of u 35.8 1.8E+02 0.0038 21.4 9.2 61 13-75 8-77 (140)
365 PF14561 TPR_20: Tetratricopep 35.3 1.1E+02 0.0024 20.4 4.8 31 44-74 18-48 (90)
366 KOG4642|consensus 35.3 1.3E+02 0.0029 24.6 5.8 68 7-74 24-104 (284)
367 KOG2581|consensus 35.1 97 0.0021 27.4 5.3 52 23-74 213-273 (493)
368 COG3947 Response regulator con 34.6 1.5E+02 0.0033 25.1 6.1 61 7-75 280-340 (361)
369 KOG1070|consensus 34.5 5.5E+02 0.012 26.7 11.0 21 47-67 1563-1583(1710)
370 smart00671 SEL1 Sel1-like repe 34.3 72 0.0016 16.4 3.6 25 50-74 3-31 (36)
371 KOG4648|consensus 33.7 35 0.00076 29.5 2.4 25 51-75 100-124 (536)
372 KOG0889|consensus 33.7 36 0.00078 37.5 2.9 52 53-105 2487-2555(3550)
373 KOG0396|consensus 31.5 1.8E+02 0.0039 25.2 6.2 89 8-101 118-217 (389)
374 PF15469 Sec5: Exocyst complex 31.5 2.3E+02 0.005 21.4 6.5 62 114-175 96-169 (182)
375 PF14649 Spatacsin_C: Spatacsi 31.0 3.2E+02 0.0069 22.9 8.4 127 14-143 54-201 (296)
376 KOG0551|consensus 30.8 3.5E+02 0.0077 23.4 8.0 14 87-100 165-178 (390)
377 PF02677 DUF208: Uncharacteriz 30.5 64 0.0014 24.9 3.2 66 130-196 90-159 (176)
378 PF04910 Tcf25: Transcriptiona 30.4 3.5E+02 0.0076 23.2 13.4 58 7-74 8-66 (360)
379 PF14561 TPR_20: Tetratricopep 30.0 1.6E+02 0.0035 19.7 4.8 34 97-130 14-48 (90)
380 PF11846 DUF3366: Domain of un 29.2 1.7E+02 0.0037 22.2 5.5 37 94-130 134-170 (193)
381 KOG1258|consensus 29.2 4.6E+02 0.01 24.2 10.0 58 9-74 300-357 (577)
382 COG0457 NrfG FOG: TPR repeat [ 28.9 2.1E+02 0.0046 20.2 13.2 52 47-99 94-154 (291)
383 PF12968 DUF3856: Domain of Un 28.3 2.4E+02 0.0052 20.6 11.8 95 18-132 21-128 (144)
384 TIGR02561 HrpB1_HrpK type III 28.1 2.6E+02 0.0057 21.0 8.1 60 82-142 52-118 (153)
385 PRK15443 pduE propanediol dehy 28.0 2.5E+02 0.0053 20.7 6.5 27 47-73 47-73 (138)
386 PF10037 MRP-S27: Mitochondria 27.7 2E+02 0.0043 25.5 6.1 49 77-126 106-160 (429)
387 COG3629 DnrI DNA-binding trans 27.3 3.6E+02 0.0079 22.4 7.4 22 64-85 190-211 (280)
388 PRK15180 Vi polysaccharide bio 27.2 3.9E+02 0.0083 24.5 7.7 75 26-100 296-382 (831)
389 KOG2063|consensus 27.1 4.3E+02 0.0092 25.9 8.5 39 107-145 494-532 (877)
390 PF07899 Frigida: Frigida-like 26.5 3.2E+02 0.0069 22.8 6.9 29 120-148 177-205 (290)
391 KOG1497|consensus 26.0 1.9E+02 0.0041 24.8 5.4 69 3-71 113-207 (399)
392 cd02576 PseudoU_synth_ScPUS7 P 25.7 1.2E+02 0.0027 25.9 4.5 38 60-98 169-212 (371)
393 PF13838 Clathrin_H_link: Clat 24.7 1.3E+02 0.0029 19.1 3.4 21 81-102 13-33 (66)
394 KOG0396|consensus 24.6 1E+02 0.0022 26.6 3.6 28 169-196 187-217 (389)
395 KOG4521|consensus 24.5 5.4E+02 0.012 26.2 8.6 53 120-180 986-1040(1480)
396 cd00194 UBA Ubiquitin Associat 24.2 1.3E+02 0.0028 16.1 3.6 25 1-29 11-36 (38)
397 KOG4056|consensus 24.0 3E+02 0.0066 20.4 6.8 50 53-112 86-135 (143)
398 COG3947 Response regulator con 23.8 1.8E+02 0.0039 24.7 4.8 24 109-132 318-341 (361)
399 PF10952 DUF2753: Protein of u 23.6 3E+02 0.0065 20.2 6.9 69 51-131 4-77 (140)
400 COG4976 Predicted methyltransf 23.4 1.3E+02 0.0027 24.7 3.7 53 14-74 3-55 (287)
401 PF11846 DUF3366: Domain of un 23.3 2E+02 0.0044 21.8 5.0 28 46-73 142-169 (193)
402 PRK10564 maltose regulon perip 23.3 1.5E+02 0.0033 24.9 4.3 24 120-143 260-283 (303)
403 PF13763 DUF4167: Domain of un 23.2 2.1E+02 0.0046 19.0 4.2 35 51-85 42-76 (80)
404 KOG4521|consensus 23.2 8.2E+02 0.018 25.0 13.9 155 15-180 929-1121(1480)
405 PF08238 Sel1: Sel1 repeat; I 22.5 1.3E+02 0.0029 15.7 3.4 12 63-74 23-34 (39)
406 KOG1915|consensus 22.2 6.1E+02 0.013 23.2 9.5 43 32-74 187-233 (677)
407 KOG1997|consensus 22.0 2.3E+02 0.0049 29.2 5.8 55 13-75 1048-1106(1518)
408 COG5187 RPN7 26S proteasome re 22.0 5E+02 0.011 22.1 7.7 56 25-80 121-191 (412)
409 PF07163 Pex26: Pex26 protein; 21.7 4.9E+02 0.011 21.9 7.5 22 64-85 38-59 (309)
410 PF10255 Paf67: RNA polymerase 21.6 2E+02 0.0044 25.2 5.0 50 25-74 128-190 (404)
411 smart00165 UBA Ubiquitin assoc 21.3 1.5E+02 0.0032 15.8 3.4 24 1-28 11-35 (37)
412 COG4477 EzrA Negative regulato 20.8 1.7E+02 0.0037 26.6 4.4 37 107-143 504-545 (570)
413 PF12616 DUF3775: Protein of u 20.8 2.6E+02 0.0056 18.3 5.6 34 104-145 16-49 (75)
414 KOG2709|consensus 20.7 2.2E+02 0.0047 25.4 4.9 46 51-102 25-82 (560)
No 1
>KOG3617|consensus
Probab=99.95 E-value=2.4e-27 Score=210.47 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=169.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh------------------------------------------
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP------------------------------------------ 43 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~------------------------------------------ 43 (198)
+|+.++|..+|.+|.++|..-.+|...|.|+.|.+++.
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~ 892 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVF 892 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHH
Confidence 47788888888888888888888888888887666654
Q ss_pred ---------------ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH
Q psy12373 44 ---------------HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK 108 (198)
Q Consensus 44 ---------------~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~ 108 (198)
+..++.|+.|||+++|+.|+.+.|+.+|.+|.||-+.||+.| ..|+.++|.+|++++++..+.+
T Consensus 893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C-~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC-IQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe-eccCchHHHHHHHhcccHHHHH
Confidence 234788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC-ChhhH----Hhc
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK-GVLTS----FRV 183 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g-~~~~A----~~a 183 (198)
++|++|++.|++.+||.||.+|..+..|||||+++++-|.+.. |...+.|+.....|+|||+.| +..+| ++|
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n---lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN---LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 9999999999999999999999999999999999998855444 566778899999999999999 88889 999
Q ss_pred CChhhHHhhhhhcC
Q psy12373 184 SQQSRAMPCSSGHH 197 (198)
Q Consensus 184 g~~~~Al~l~~~~~ 197 (198)
|.+.+|++|.|..+
T Consensus 1049 Gm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQ 1062 (1416)
T ss_pred cchHHHHHHHHhhc
Confidence 99999999998753
No 2
>KOG3617|consensus
Probab=99.93 E-value=2.4e-25 Score=197.93 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=162.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHH-------------HHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWT-------------KIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~-------------~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
.+|...++|.+..|+.|-|+..|..+++|. +|.++++...|+..++++|+++|+.|++.+|+++|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356666667777777777777776666655 5777888888999999999999999999999999999
Q ss_pred hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhh
Q psy12373 74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~ 152 (198)
|..+.+|||+|. ..+.-|+...++..++..+ ....|+||+..| ..+.||.+|+|||.+.+|++||....++..+.-|
T Consensus 993 AqafsnAIRlcK-End~~d~L~nlal~s~~~d-~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 993 AQAFSNAIRLCK-ENDMKDRLANLALMSGGSD-LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhhcCchh-HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 999999999999 5566677999998765444 557899999998 7899999999999999999999999998765544
Q ss_pred h-hhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhhcC
Q psy12373 153 L-LEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSGHH 197 (198)
Q Consensus 153 ~-~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~~~ 197 (198)
. .|.+.++|+++.++|.+|+++.+|++| .++.+++.|+.+|.+.|
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 478899999999999999999999999 89999999999999876
No 3
>KOG3616|consensus
Probab=99.84 E-value=2.5e-20 Score=164.97 Aligned_cols=191 Identities=16% Similarity=0.098 Sum_probs=171.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~ 82 (198)
.|+|.+|.++|...|.|++||.||-+-|..+.+.||+.+.. -.+.+.++|..+|..|+...|.+.|.++|+|+.+|+
T Consensus 837 hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavn 916 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVN 916 (1636)
T ss_pred hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHH
Confidence 37999999999999999999999999999999999997654 456778999999999999999999999999999999
Q ss_pred HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCH
Q psy12373 83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNP 161 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~ 161 (198)
||. ..+.|++|.++++..+.....++++-.+.++---+.||+++-+.|-...|+..+.+.+.|+...++.+++ ++..|
T Consensus 917 myk-~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~ 995 (1636)
T KOG3616|consen 917 MYK-ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMG 995 (1636)
T ss_pred Hhh-hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCc
Confidence 999 7899999999999877777777777777776666899999999999999999999999999888887776 68899
Q ss_pred HHHHHHHHHHHhCCChhhH-----------------------------HhcC-ChhhHHhhhhhcC
Q psy12373 162 VELKRLAIHFEEDKGVLTS-----------------------------FRVS-QQSRAMPCSSGHH 197 (198)
Q Consensus 162 ~~~~~~A~~~e~~g~~~~A-----------------------------~~ag-~~~~Al~l~~~~~ 197 (198)
++++++|.++|++|+++.| +++| ++++|+.|....+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dn 1061 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDN 1061 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcc
Confidence 9999999999999999887 6777 8999999887654
No 4
>KOG1538|consensus
Probab=99.82 E-value=1.4e-19 Score=158.22 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~ 82 (198)
.|+|.||+++|.++|.-.+|++||.++++|+.+.+.+..-+ .+.+.+.-|.|..+.++...|.++.+.+|+..+|+.
T Consensus 645 ~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 645 QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhh
Confidence 48999999999999999999999999999999999997655 466888999999999999999999999999999999
Q ss_pred HHhhccCCHHHHHHHHHhcCCH--HHHHHHH-------------HHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhh
Q psy12373 83 VDLDHLNDIRHAVDIVKAKKCT--EGAKRIA-------------DYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLH 147 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~~~--~~~~~~A-------------~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~ 147 (198)
++. ..|+.|-++.|+++.... +....+| +.|.+.||..+.|++.+.+++|++||++|..|+.+
T Consensus 725 i~~-d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~- 802 (1081)
T KOG1538|consen 725 ICG-DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF- 802 (1081)
T ss_pred hhh-cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccc-
Confidence 999 668888899999976543 3344444 45678999999999999999999999999999876
Q ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373 148 EFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG 195 (198)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~ 195 (198)
.|++|...|+++.+..+|++| ++||+-.+|++++.+
T Consensus 803 ------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 803 ------------KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred ------------cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 568899999999999999999 999999999998764
No 5
>KOG2041|consensus
Probab=99.79 E-value=3.9e-18 Score=150.28 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=164.5
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S----ATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
+++|.|++|.++|..+.+-|.||+++.++|+|.++.+|++.-+ + ......+|.+|..+..|++|.++|.++|+
T Consensus 745 ~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4668999999999999999999999999999999999998532 2 23556789999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh-h
Q psy12373 77 YDNVVRVDLDHLNDIRHAVDIVKAKKCTE-GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL-L 154 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~~a~~l~~~~~~~~-~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~-~ 154 (198)
.++.++++. +++++++...+++..|+.. ....+|+.|.+.|+.++||+.|.+.+.+..|+.-|...+++....++. +
T Consensus 825 ~e~~~ecly-~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 825 TENQIECLY-RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hHhHHHHHH-HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999988644 445789999999999999999999999999988888888875555543 1
Q ss_pred hcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373 155 EEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG 195 (198)
Q Consensus 155 l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~ 195 (198)
-..+..+.+..+.|.+|...++..+| .+||.+-+|.+|+++
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 23344566777777888999999999 999999999999875
No 6
>KOG3616|consensus
Probab=99.77 E-value=7.6e-18 Score=149.45 Aligned_cols=190 Identities=16% Similarity=0.208 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 83 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l 83 (198)
.+|+.|+.+|++-.|+++|++||.+..-|-++.+|++-.- ...+-..||.+++..|+++.|+.+|+.+++..+||+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 5799999999999999999999999999999999887432 5567789999999999999999999999999999999
Q ss_pred HhhccCCHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh--hhcC
Q psy12373 84 DLDHLNDIRHAVDIVKAKKCTEGA----KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL--LEED 157 (198)
Q Consensus 84 ~~~~~~~~~~a~~l~~~~~~~~~~----~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~--~l~~ 157 (198)
.+ ...+|.+|+.|+....+.... -.+|++|.+.|+|+-|.++|.+++.+.+|+.|+-+.|++.....+. ..++
T Consensus 742 ai-~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 742 AI-GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred Hh-hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 99 889999999999866554432 2689999999999999999999999999999999998875444432 1456
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhhcC
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSGHH 197 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~~~ 197 (198)
..+...|+.-|+-++++|+|.+| +-.|.+++||.|+-.|+
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence 77778888888999999999999 88899999999988775
No 7
>KOG2041|consensus
Probab=99.66 E-value=1.3e-15 Score=134.63 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
-.+++|+++|.++|+.+.-++|+.++.+|+.+..++..++ +.+++-.+|.+|.+.|.+++|+++|.|.++++.||..|+
T Consensus 810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv 889 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCV 889 (1189)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHH
Confidence 3578999999999999999999999999999999999887 889999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHH---HHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADY---CNKHGDFGAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~---~~~~g~~~~Av~~y~~ag~~~~A~~la~~ 142 (198)
++|+|.+|++++..+.-|++...+|++ |...+...+||+.+++||++-+|.+|..+
T Consensus 890 -~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 890 -ELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred -HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 999999999999999888877666654 67788999999999999999999887643
No 8
>KOG1538|consensus
Probab=99.59 E-value=7.6e-15 Score=128.96 Aligned_cols=138 Identities=11% Similarity=0.070 Sum_probs=129.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD 84 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~ 84 (198)
+..+-|++++..+|+.++||++....|+.+.+.++..+++ +.+.+..+|.++.....+.-|.+.|.+.||..+.|+|.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlH 783 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLH 783 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhhe
Confidence 6788999999999999999999999999999999999887 77888999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 85 LDHLNDIRHAVDIVKAKKC--TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
+ ..++|++|++++..||. +++...+|+|+.+.++|++|-+.|++||+-.||.++.++.-.
T Consensus 784 v-e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 784 V-ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred e-ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 9 78999999999999997 456678999999999999999999999999999999987644
No 9
>KOG1920|consensus
Probab=99.10 E-value=1.7e-09 Score=100.75 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=118.8
Q ss_pred cchHHHHHHHHHHcC--CHHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373 6 LTLDRGKWTLYESAG--NYEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVV 81 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g--~~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av 81 (198)
++.|+.|......+| -++....+-.+-+.|+.+..+...-+ -..++.-+|.++...+.+++|.-+|+++|..++|+
T Consensus 893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl 972 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL 972 (1265)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH
Confidence 467888888888888 57777877778888888777765433 45677789999999999999999999999999999
Q ss_pred HHHhhccCCHHHHHHHHHhcCCH-HHHHHHH-----------------HH-HHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373 82 RVDLDHLNDIRHAVDIVKAKKCT-EGAKRIA-----------------DY-CNKHGDFGAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~~~~~-~~~~~~A-----------------~~-~~~~g~~~~Av~~y~~ag~~~~A~~la~~ 142 (198)
..+. ..++|++++.++.+.... +....+| +. ++--+++++||.+|++|..|++|+++|..
T Consensus 973 ~a~~-~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 973 KAYK-ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHH-HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHh
Confidence 9999 899999999999865432 3222221 22 23457889999999999999999999999
Q ss_pred cchhhHHhhhh
Q psy12373 143 HKKLHEFGKFL 153 (198)
Q Consensus 143 ~~~~~~~~~~~ 153 (198)
++.-|.+++++
T Consensus 1052 ~~~~d~iee~l 1062 (1265)
T KOG1920|consen 1052 AKRDDIIEEVL 1062 (1265)
T ss_pred cccchHHHHHH
Confidence 99877777764
No 10
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=7.4e-09 Score=85.47 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~ 82 (198)
.+|++|+..|..+|++++|+++|.++.... .+.. ....+...+..+... ++++|+++|.++ ++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~------~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A------~~ 102 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCY------EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA------IE 102 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH------HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH------HH
Confidence 344444445555555555555555543222 2222 223344445555444 888888888877 88
Q ss_pred HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCH
Q psy12373 83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNP 161 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~ 161 (198)
++. ..|+++.+.++ ...+|+.|++. |++++|+++|.+|-. +....+.. ....
T Consensus 103 ~y~-~~G~~~~aA~~---------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~------~y~~e~~~-----------~~a~ 155 (282)
T PF14938_consen 103 IYR-EAGRFSQAAKC---------LKELAEIYEEQLGDYEKAIEYYQKAAE------LYEQEGSP-----------HSAA 155 (282)
T ss_dssp HHH-HCT-HHHHHHH---------HHHHHHHHCCTT--HHHHHHHHHHHHH------HHHHTT-H-----------HHHH
T ss_pred HHH-hcCcHHHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHCCCh-----------hhHH
Confidence 888 77888887655 44688888888 899998888876544 44333322 1123
Q ss_pred HHHHHHHHHHHhCCChhhH
Q psy12373 162 VELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 162 ~~~~~~A~~~e~~g~~~~A 180 (198)
+.+.++|..+...|+|++|
T Consensus 156 ~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhCCHHHH
Confidence 4556677777666666666
No 11
>KOG1586|consensus
Probab=98.90 E-value=3.8e-09 Score=83.58 Aligned_cols=108 Identities=24% Similarity=0.251 Sum_probs=71.9
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-------cC---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-------IK---SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-------~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|..++|++|+++|+++++ +|..+++|..|..-..+ .+ +....+.-|--+-+.++..+|+++..+
T Consensus 25 gg~~k~eeAadl~~~Aan------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ 98 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAAN------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEK 98 (288)
T ss_pred CCCcchHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 344899999999999998 88888888876533321 11 122222222223333355555555544
Q ss_pred hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHcCCh
Q psy12373 74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILSKCY 133 (198)
Q Consensus 74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~ag~~ 133 (198)
+ |+|+. +.|++..|.+. ...+|.+|++. .|+++||..|..|+.|
T Consensus 99 a------ieIyt-~~Grf~~aAk~---------~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 99 A------IEIYT-DMGRFTMAAKH---------HIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred H------HHHHH-hhhHHHHHHhh---------hhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4 77787 77887766433 44688999876 8899999999999986
No 12
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=4.2e-07 Score=75.00 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH 87 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~ 87 (198)
.|++|+.+|.++|+ +|...++|++|.. .+...|..+++.|+...|...|+.+ ..++. .
T Consensus 30 ~~e~Aa~~y~~Aa~------~fk~~~~~~~A~~---------ay~kAa~~~~~~~~~~~Aa~~~~~A------a~~~k-~ 87 (282)
T PF14938_consen 30 DYEEAADLYEKAAN------CFKLAKDWEKAAE---------AYEKAADCYEKLGDKFEAAKAYEEA------ANCYK-K 87 (282)
T ss_dssp HHHHHHHHHHHHHH------HHHHTT-CHHHHH---------HHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-H
T ss_pred CHHHHHHHHHHHHH------HHHHHhccchhHH---------HHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-h
Confidence 67788887777776 7777788877763 3445566666677766666666655 66666 3
Q ss_pred cCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHH
Q psy12373 88 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKR 166 (198)
Q Consensus 88 ~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~ 166 (198)
. ++++|+++ +++|+++|...|++..|.++...-+.. +.+. ++ .+..-+.|.+
T Consensus 88 ~-~~~~Ai~~----------------------~~~A~~~y~~~G~~~~aA~~~~~lA~~--ye~~--~~d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 88 G-DPDEAIEC----------------------YEKAIEIYREAGRFSQAAKCLKELAEI--YEEQ--LGDYEKAIEYYQK 140 (282)
T ss_dssp T-THHHHHHH----------------------HHHHHHHHHHCT-HHHHHHHHHHHHHH--HCCT--T--HHHHHHHHHH
T ss_pred h-CHHHHHHH----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHH--cCCHHHHHHHHHH
Confidence 2 66655544 346888888888888887776544321 0000 01 1122456777
Q ss_pred HHHHHHhCCChhhH-----------HhcCChhhHHhhhhh
Q psy12373 167 LAIHFEEDKGVLTS-----------FRVSQQSRAMPCSSG 195 (198)
Q Consensus 167 ~A~~~e~~g~~~~A-----------~~ag~~~~Al~l~~~ 195 (198)
.+..|+..|....+ .+.|+|.+|++++.+
T Consensus 141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88899999977666 889999999999864
No 13
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.75 E-value=1.1e-06 Score=81.13 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=62.8
Q ss_pred HHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHHHhhccCCHH
Q psy12373 24 KAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 24 ~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l~~~~~~~~~ 92 (198)
..|.+|.+.|+++.|.++.+... +...+..+...+...|++++|.++|.+.. .+...++.|. ..|+++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~-~~g~~~ 342 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS-RLALLE 342 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hccchH
Confidence 45667777777777777776654 33444556677777788888887776552 2456677777 677777
Q ss_pred HHHHHHHh---c---CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 93 HAVDIVKA---K---KCTEGAKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 93 ~a~~l~~~---~---~~~~~~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
+|.++-.. . ++......+...|.+.|++++|.++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 76655432 1 111222234555666666666655543
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.70 E-value=2.8e-06 Score=78.31 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred HHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHH
Q psy12373 27 TCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRH 93 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~ 93 (198)
..|.+.++++++..++... +++..+..+|..+...|++++|+++|.++-. +....+++. ..|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHH
Confidence 3455566777766665432 3667788889999999999999999988632 234456666 6788888
Q ss_pred HHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 94 AVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 94 a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
|..+.++ .| +......++..+...|++++|+.+|.++
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8776543 22 2344456777777778877777665543
No 15
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.67 E-value=5e-06 Score=79.73 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHhCCChhhH
Q psy12373 160 NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 160 ~~~~~~~~A~~~e~~g~~~~A 180 (198)
+...+..+...|.+.|++++|
T Consensus 718 dvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444444
No 16
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.66 E-value=5.8e-06 Score=79.32 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH--------------------------HhcCChhhHHhhhh
Q psy12373 157 DEPNPVELKRLAIHFEEDKGVLTS--------------------------FRVSQQSRAMPCSS 194 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~~g~~~~A--------------------------~~ag~~~~Al~l~~ 194 (198)
...+...+..+...|.+.|++++| .+.|++++|++++.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345667777777777778877777 36777777777654
No 17
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.66 E-value=2.7e-06 Score=74.41 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=117.5
Q ss_pred HccCHHHH------HhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCH
Q psy12373 31 QLKNWTKI------GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCT 104 (198)
Q Consensus 31 ~~~~~~~a------~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~ 104 (198)
-.++++.+ .+++..++ ++....+++++++.|-.+.|.++ +.|++.=.++++ .+|+++.|.+++++.+++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~---~~D~~~rFeLAl-~lg~L~~A~~~a~~~~~~ 347 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQF---VTDPDHRFELAL-QLGNLDIALEIAKELDDP 347 (443)
T ss_dssp HTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHH---SS-HHHHHHHHH-HCT-HHHHHHHCCCCSTH
T ss_pred HcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhh---cCChHHHhHHHH-hcCCHHHHHHHHHhcCcH
Confidence 34556663 45555555 67788999999999999999765 788888899999 999999999999999989
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC-CCCHHHHHHHHHHHHhCCChhhH---
Q psy12373 105 EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED-EPNPVELKRLAIHFEEDKGVLTS--- 180 (198)
Q Consensus 105 ~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~e~~g~~~~A--- 180 (198)
..-.++|......|+++-|.+.|.++++++.-.=|+.-.|..+-+.++..+.. ...-...+.++-+. |++++-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~l---gd~~~cv~l 424 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLL---GDVEECVDL 424 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHH---T-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHc---CCHHHHHHH
Confidence 88889999999999999999999999999999989888887766666644332 33334434333333 666666
Q ss_pred -HhcCChhhHHhhhhhcCC
Q psy12373 181 -FRVSQQSRAMPCSSGHHP 198 (198)
Q Consensus 181 -~~ag~~~~Al~l~~~~~~ 198 (198)
+++|++.+|.=++..|.|
T Consensus 425 L~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 425 LIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHTT-HHHHHHHHHHTT-
T ss_pred HHHcCCchHHHHHHHhcCC
Confidence 888888888888888877
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.65 E-value=4.5e-06 Score=75.90 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=112.3
Q ss_pred chHHHHHHHHHHcC--C------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG--N------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g--~------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|...|.++= + +-....++...|+++.+...+.. ..++.++..+|..+...|++++|+.+|.+
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555441 1 12223445566677776665542 23678999999999999999999999999
Q ss_pred hcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH------
Q psy12373 74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ------ 134 (198)
Q Consensus 74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~------ 134 (198)
+-+. .....++. .+|++++|+...++ .| ++.....++..+...|++++|++.|.++-...
T Consensus 425 al~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQY-KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHHcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 8432 22334455 67999999887654 23 35556678999999999999999998865431
Q ss_pred ---------HHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 135 ---------DAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 135 ---------~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+..+....+.++....++. +. .+.++..+..+|+.+...|++++|
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 11112222344433222221 22 234566788999999999999999
No 19
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.64 E-value=1.4e-06 Score=76.26 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHH----------HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373 9 DRGKWTLYESAGNYEKAA----------TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD 78 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai----------~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~ 78 (198)
....+.++++.|-++.|+ ++-+++|+.+.|.+++..++++....++|...-..|+++-|.++|.+++|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~ 377 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS 377 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence 456778888888888887 4677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcc
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~ 144 (198)
+..=++. -.|+-++..+++.. .++...... +-+ -.||+++.+++++++|++.+|.=.|..++
T Consensus 378 ~L~lLy~-~~g~~~~L~kl~~~a~~~~~~n~af~-~~~--~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 378 GLLLLYS-STGDREKLSKLAKIAEERGDINIAFQ-AAL--LLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HHHHHHH-HCT-HHHHHHHHHHHHHTT-HHHHHH-HHH--HHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred ccHHHHH-HhCCHHHHHHHHHHHHHccCHHHHHH-HHH--HcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 9999999 78888887766543 333333322 222 23899999999999999999988877664
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.62 E-value=8.1e-06 Score=75.26 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++..+..+|..|...|++.+|
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHH
Confidence 34566666777777777777666
No 21
>KOG2247|consensus
Probab=98.61 E-value=3.7e-10 Score=97.07 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=150.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 86 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~ 86 (198)
+++-+++.+|+..|.|+.+--.|.+.+.|.++..++.++-.+..+..+|++.|..+ ..|+ .|...++...-+|.+.+
T Consensus 186 ~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~cyrwylD 262 (615)
T KOG2247|consen 186 TQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIHCYRWYLD 262 (615)
T ss_pred hhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC--ccce-EeeecCCceeEEEEecc
Confidence 67789999999999999999999999999999999999888999999999999988 7788 99999999999999997
Q ss_pred -ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373 87 -HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK 165 (198)
Q Consensus 87 -~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (198)
++....++..+++.+ .......|++|.+. |+..|+++...+++..+|+.++..+++...+.++.++ -...+
T Consensus 263 g~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~-----y~n~L 334 (615)
T KOG2247|consen 263 GYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEV-----YMNTL 334 (615)
T ss_pred ccccccccceeEEEEe--ccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHH
Confidence 788888898888775 45566789999999 9999999999999999999999999888766766321 11115
Q ss_pred HHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373 166 RLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG 195 (198)
Q Consensus 166 ~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~ 195 (198)
..|.+++....+-.+ ..++++..++..++.
T Consensus 335 ~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 335 IEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred HHHHhccCceeeeeccceeeehhccchHHHHHHh
Confidence 677777777777666 778888888776653
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=2.9e-07 Score=75.49 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=79.4
Q ss_pred cchHHHHHHHHHHc-------CCHHHHHHHHHHccCHHHHHhhhhc-------cCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESA-------GNYEKAATCYIQLKNWTKIGQLLPH-------IKSATTFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~-------g~~~~Ai~~y~~~~~~~~a~~l~~~-------~~~~~l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
.+.+++|.++++++ .-+..++.+|...++|+++.+++.. .+++.++...|..+...|++++|+++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777666543 3445677888888999888777754 126678888899999999999999999
Q ss_pred HHhcCH--------HHHHHHHhhccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373 72 ERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 72 ~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~ 138 (198)
.++=.. ...+.+++ ..|+.+++..+++.. +++.....+|..+...|++++|+..|.++-.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~------ 242 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK------ 242 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH------
T ss_pred HHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc------
Confidence 887531 33455666 667777755554321 2233334456666666666666665554221
Q ss_pred HHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 139 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 139 la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+.+|..+..+|..+...|++++|
T Consensus 243 -----------------~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 243 -----------------LNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp -----------------HSTT-HHHHHHHHHHHT--------
T ss_pred -----------------ccccccccccccccccccccccccc
Confidence 2456899999999999999988888
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.60 E-value=9e-06 Score=69.20 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=69.2
Q ss_pred HHHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------------HHHHHHHhhc
Q psy12373 26 ATCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAEDY-------------DNVVRVDLDH 87 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------------~~av~l~~~~ 87 (198)
..+|...|+++.|..+..+. .+...+..++..+...|++++|++.|.+.-.. .....++. .
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-A 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-h
Confidence 33444445555554444321 13334445555555556666665555544211 01122233 3
Q ss_pred cCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC--hHH---H----HHHHHHcchhhHHhhhh
Q psy12373 88 LNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKC--YQD---A----FNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 88 ~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--~~~---A----~~la~~~~~~~~~~~~~ 153 (198)
.|++++|..+.++ .++ ......+|..+...|++++|+++|.++.. +.. + ..+....+.++.....+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566665555443 111 22233455666666666666666666542 111 1 12223334333222222
Q ss_pred h--hcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 154 L--EEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 154 ~--l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
. +....++..+..++..+...|++++|
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 1 11112223446666666666666666
No 24
>PLN03077 Protein ECB2; Provisional
Probab=98.55 E-value=5e-06 Score=78.36 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHHHHHccCHHHHHhhhhccCC--hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 23 EKAATCYIQLKNWTKIGQLLPHIKS--ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 23 ~~Ai~~y~~~~~~~~a~~l~~~~~~--~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...|.+|.+.|+++.|.++.+.... .-.+..+-..+-..|++++|.++|.+.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566777777777777777766553 333444455666777777777777665
No 25
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.54 E-value=5.7e-06 Score=76.31 Aligned_cols=157 Identities=8% Similarity=0.021 Sum_probs=89.0
Q ss_pred HHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---------HHHHHHHHhhccCCH
Q psy12373 23 EKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAED---------YDNVVRVDLDHLNDI 91 (198)
Q Consensus 23 ~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---------~~~av~l~~~~~~~~ 91 (198)
...|.+|++.|+++.|.++.+... +...+..+...+-..|+.++|+++|.+... +...+..|. +.|..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~-~~g~~ 442 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR-YSGLS 442 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh-cCCcH
Confidence 345566666666666666665543 333344455666666777777776666432 455566666 66677
Q ss_pred HHHHHHHHhc-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC------hHHHHHHHHHcchhhHHhhhhh--hc
Q psy12373 92 RHAVDIVKAK-------KCTEGAKRIADYCNKHGDFGAAIHFLILSKC------YQDAFNLSQQHKKLHEFGKFLL--EE 156 (198)
Q Consensus 92 ~~a~~l~~~~-------~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~------~~~A~~la~~~~~~~~~~~~~~--l~ 156 (198)
+++.++-..- |+.....-+...|.+.|++++|.+++.+.+. |..-+..+..+++++....+.. +.
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 7666554321 1111222345556666777777777666554 3333455556666554333321 12
Q ss_pred -CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 157 -DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 157 -~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+.++..|..+...|...|++++|
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 122355777888888888888777
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.54 E-value=2.7e-05 Score=71.54 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|...|.+.= + +.....++...|+++.|...+.+ .+++..+..+++.+...|++++|+..|.+
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 55555555555431 1 12223445555666665444432 22455666667777777777777776654
Q ss_pred hc-----CHH--HHHHHHhhccCCHHHHHHHHHhc----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 74 AE-----DYD--NVVRVDLDHLNDIRHAVDIVKAK----K--CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 74 a~-----~~~--~av~l~~~~~~~~~~a~~l~~~~----~--~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.- +.. ..+..+. ..|++++|..+.+.. + ........+..+...|++++|+..|.++
T Consensus 170 ~~~~~P~~~~a~~~~~~l~-~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFL-NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 41 110 0111233 456666666655431 1 1111123345555666666666555443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.51 E-value=2.3e-05 Score=66.70 Aligned_cols=173 Identities=10% Similarity=0.024 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc---C------ChHHHHHHHHHHHHcCCHHHHHH
Q psy12373 7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI---K------SATTFIQYAKAKEAMGSYRESVG 69 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~---~------~~~l~~~~A~~~e~~g~~~~A~~ 69 (198)
|.+++|..+|.++ .-+.....+|...|+++.+..+...+ + ....+..+|..+...|+++.|.+
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 5556666666554 12444555666666666665554321 1 12456677889999999999999
Q ss_pred HHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----CCHH------HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 70 AYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----KCTE------GAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 70 ~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+|.++-. +...+.++. ..|+|++|..+.+.. +.+. ....+|..+...|++++|+.+|.++-
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9988853 233456677 778999988776532 2111 11246677778888888888887754
Q ss_pred Ch----HHH----HHHHHHcchhhHHhhhh----hhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 132 CY----QDA----FNLSQQHKKLHEFGKFL----LEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 132 ~~----~~A----~~la~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.. ..+ ..++...|.++...+++ .+.++..+..+..++..|...|++++|
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 31 112 23344555544333322 122333345667788888888888877
No 28
>KOG0985|consensus
Probab=98.49 E-value=1.5e-05 Score=74.29 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---HHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---DNVVR 82 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---~~av~ 82 (198)
.+|+||-..|.+-....+|+...+ ..++.++|.+.+.+...+.+..++|+.--..|...+||+-|+|+.|+ ...|+
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVID 1141 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHH
Confidence 689999999999999999999998 67999999999999999999999999999999999999999999985 67899
Q ss_pred HHhhccCCHHHHHHHH
Q psy12373 83 VDLDHLNDIRHAVDIV 98 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~ 98 (198)
++- +.|.|++.++..
T Consensus 1142 ~a~-~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1142 VAS-RTGKYEDLVKYL 1156 (1666)
T ss_pred HHH-hcCcHHHHHHHH
Confidence 998 889999998754
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.48 E-value=1.4e-05 Score=77.68 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC------------------HHHHHH
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED------------------YDNVVR 82 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~------------------~~~av~ 82 (198)
..+|...|+++.|...+++ ..++..+...|.++...|++++|+..+.+.-. .....+
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 3345566677776655542 22666677777778888888888888776421 112244
Q ss_pred HHhhccCCHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchhhHHhhhh
Q psy12373 83 VDLDHLNDIRHAVDIVKAKKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~~~~~~~~ 153 (198)
.+. ..|+.++|..+.+..|. +.....+|.++.+.|++++|+..|.++=.. .+| .++....++++...+.+
T Consensus 582 ~l~-~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLR-DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHH-HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555 67888888888887654 344557899999999999999888765431 112 23334445544333332
Q ss_pred h--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 154 L--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 154 ~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
. +. .+.++..+..+|..+...|++++|
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 1 12 235677888889988899999888
No 30
>PLN03077 Protein ECB2; Provisional
Probab=98.44 E-value=3.4e-05 Score=72.78 Aligned_cols=51 Identities=4% Similarity=0.002 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
..+...+-..+.+.|++++|.+.|.+..+ |...|..++ ..|++++|..+-+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~-~~g~~~eA~~lf~ 479 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR-LNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-HCCCHHHHHHHHH
Confidence 33444555667777777777777776654 566677777 6677777776654
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=1.8e-05 Score=65.74 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc---CCHHHHHHHHHH-----
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK---KCTEGAKRIADY----- 113 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~---~~~~~~~~~A~~----- 113 (198)
.+.++|+-|...|.++-|.+.|...-| ....+.||- .-.+|++|+.++++. ....--..+|++
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 455889999999999999999998876 245566776 678999999999843 222222344444
Q ss_pred --HHhcCCHHHHHHHHHHcCChHH----H----HHHHHHcchhhHHhhhh----hhcCCCCHHHHHHHHHHHHhCCChhh
Q psy12373 114 --CNKHGDFGAAIHFLILSKCYQD----A----FNLSQQHKKLHEFGKFL----LEEDEPNPVELKRLAIHFEEDKGVLT 179 (198)
Q Consensus 114 --~~~~g~~~~Av~~y~~ag~~~~----A----~~la~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~e~~g~~~~ 179 (198)
..-..++++|+.++.||=.-+. | =++.-..|.+....+.+ .-.++-.|++...+...|...|++.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 4557788888888877643211 0 12223333333222222 12345557778888888888888776
Q ss_pred H
Q psy12373 180 S 180 (198)
Q Consensus 180 A 180 (198)
.
T Consensus 268 ~ 268 (389)
T COG2956 268 G 268 (389)
T ss_pred H
Confidence 6
No 32
>KOG0276|consensus
Probab=98.35 E-value=7.5e-06 Score=72.64 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=119.8
Q ss_pred HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHH
Q psy12373 31 QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRI 110 (198)
Q Consensus 31 ~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~ 110 (198)
.-++++.+..++..++ ++.....+..+|+.|..++|.+. +.|...=.++.+ ++|+.+.|..|+.+..+..--.++
T Consensus 598 mrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~---s~D~d~rFelal-~lgrl~iA~~la~e~~s~~Kw~~L 672 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALEL---STDPDQRFELAL-KLGRLDIAFDLAVEANSEVKWRQL 672 (794)
T ss_pred hhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhc---CCChhhhhhhhh-hcCcHHHHHHHHHhhcchHHHHHH
Confidence 3467777777777777 77888999999999999999764 788888899999 999999999999998888888899
Q ss_pred HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCCh
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQ 186 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~ 186 (198)
+++..+.|++..|.+.+.+|.+|..-+-++-.. .+.+.+..+|.-.+++|..--| ...|++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~---------------g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARDLGSLLLLYTSS---------------GNAEGLAVLASLAKKQGKNNLAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcchhhhhhhhhhc---------------CChhHHHHHHHHHHhhcccchHHHHHHHcCCH
Confidence 999999999999999999999986655444333 3455566677777777777777 778888
Q ss_pred hhHHhhhhhcC
Q psy12373 187 SRAMPCSSGHH 197 (198)
Q Consensus 187 ~~Al~l~~~~~ 197 (198)
+++++++.+.+
T Consensus 738 ~~C~~lLi~t~ 748 (794)
T KOG0276|consen 738 EECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhcC
Confidence 88888877653
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.34 E-value=0.00013 Score=67.10 Aligned_cols=152 Identities=6% Similarity=-0.082 Sum_probs=86.4
Q ss_pred HHHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHHHhhccCCH
Q psy12373 26 ATCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRVDLDHLNDI 91 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l~~~~~~~~ 91 (198)
..++...|+++.|...+..+ +++..+..++ .+...|++++|+..|.++-.. ....+++. ..|++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~-~~g~~ 228 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC-AVGKY 228 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HCCCH
Confidence 44555666677665544321 2444444443 467889999999988874221 12245566 67888
Q ss_pred HHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHH----HHHHHHHcCCh----HHH----HHHHHHcchhhHH----h
Q psy12373 92 RHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGA----AIHFLILSKCY----QDA----FNLSQQHKKLHEF----G 150 (198)
Q Consensus 92 ~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~----Av~~y~~ag~~----~~A----~~la~~~~~~~~~----~ 150 (198)
++|....++ .| ++.....+|..+...|++++ |+..|.++-.. ..+ ..++...|.++.. .
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888776653 22 34455567888888888875 66666655321 011 1112222333222 2
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 151 KFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++.+ .+.++.....++..+...|++++|
T Consensus 309 ~al~l-~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 309 QSLAT-HPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 22112 234567777777777777777776
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.31 E-value=9.6e-07 Score=72.43 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh----c---CHHHHHHHHhhccCCHHHHHHHHHh---c----CCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA----E---DYDNVVRVDLDHLNDIRHAVDIVKA---K----KCTEGAKRIAD 112 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka----~---~~~~av~l~~~~~~~~~~a~~l~~~---~----~~~~~~~~~A~ 112 (198)
++..+..++.. ...+++++|+++++++ + -+..++.++. ..++|+++..+..+ . +++.....+|.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY-RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ------------------------------------------H-HH-HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHH-HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 34455566666 6888899998776654 2 2456778887 88999998887654 1 23444557899
Q ss_pred HHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchhhHHhhhhh-h--cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 113 YCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKLHEFGKFLL-E--EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 113 ~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~~~~~~~~~-l--~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
++.+.|++++|+..|.++=.. .++ +-+..+.|..+.+.+++. + ..+.+|.+...+|..+...|++++|
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 999999999999999877441 112 223344555554444431 1 1245677888889999999999888
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.30 E-value=0.00012 Score=71.24 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcC
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHG 118 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g 118 (198)
...|..+...|++++|+++|.++-. +....+++. ..|++++|..+.++ .| ++......+.++...|
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence 3456667778888888888887742 123455566 67888888766553 23 3444445666677777
Q ss_pred CHHHHHHHHHH
Q psy12373 119 DFGAAIHFLIL 129 (198)
Q Consensus 119 ~~~~Av~~y~~ 129 (198)
++++|+..+.+
T Consensus 544 ~~~~Al~~l~~ 554 (1157)
T PRK11447 544 RDRAALAHLNT 554 (1157)
T ss_pred CHHHHHHHHHh
Confidence 77777665544
No 36
>KOG2003|consensus
Probab=98.27 E-value=4.9e-05 Score=65.87 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCC
Q psy12373 19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLND 90 (198)
Q Consensus 19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~ 90 (198)
.|+.+.|++||.++.-+- ..+.+++.++|..+|...+..+||++|.++... .+.-++|- +-|+
T Consensus 537 ~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd-qegd 607 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD-QEGD 607 (840)
T ss_pred hcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh-cccc
Confidence 355555555555443221 135678888888889888888999988888742 34455565 5566
Q ss_pred HHHHHHHHHhc----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373 91 IRHAVDIVKAK----KC-TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK 165 (198)
Q Consensus 91 ~~~a~~l~~~~----~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (198)
-..|++.--.+ |+ .+...++|.||....-+++||++|.+|.- -.+....-.+
T Consensus 608 ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-----------------------iqp~~~kwql 664 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-----------------------IQPNQSKWQL 664 (840)
T ss_pred hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----------------------cCccHHHHHH
Confidence 66666653221 22 34455677777776667777777665532 1223345667
Q ss_pred HHHHHHHhCCChhhH
Q psy12373 166 RLAIHFEEDKGVLTS 180 (198)
Q Consensus 166 ~~A~~~e~~g~~~~A 180 (198)
++|..|-..|+|.+|
T Consensus 665 miasc~rrsgnyqka 679 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKA 679 (840)
T ss_pred HHHHHHHhcccHHHH
Confidence 788888666666555
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.23 E-value=0.00017 Score=65.74 Aligned_cols=156 Identities=13% Similarity=0.041 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCC
Q psy12373 19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLND 90 (198)
Q Consensus 19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~ 90 (198)
.++++.|+++|.++-.... ........+..+|..+...|++++|+..|.++-. +.....++. .+|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~ 380 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGD 380 (615)
T ss_pred hhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCC
Confidence 3566666666544321110 0011334556667777777777777777777632 123334455 5677
Q ss_pred HHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH----HH-HH---HHHHcchhhHHhhhhh--h
Q psy12373 91 IRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ----DA-FN---LSQQHKKLHEFGKFLL--E 155 (198)
Q Consensus 91 ~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~----~A-~~---la~~~~~~~~~~~~~~--l 155 (198)
+++|.....+ .| ++.....+|..+...|++++|+..|.++-... .+ +. +....|.++.....+. +
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777665432 22 24555567777777788888887776663211 11 11 1122233322222210 2
Q ss_pred c-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 156 E-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 156 ~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
. .+..+..+..++..+...|++++|
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHH
Confidence 2 345688888888888888888888
No 38
>KOG1920|consensus
Probab=98.21 E-value=2.2e-05 Score=74.02 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChH-HH---HHHHHHHHHcCCHHHHHH-HHHHhcCHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SAT-TF---IQYAKAKEAMGSYRESVG-AYERAEDYDNV 80 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~-l~---~~~A~~~e~~g~~~~A~~-~Y~ka~~~~~a 80 (198)
.++++|+-+|+++|+.++|++.|..+++|..+..++...+ +.. +. ..++.-+-..+.+-+|.+ .-+-+++++.|
T Consensus 953 ~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a 1032 (1265)
T KOG1920|consen 953 LMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA 1032 (1265)
T ss_pred ccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH
Confidence 6789999999999999999999999999999999988654 233 22 455555556666555554 55667899999
Q ss_pred HHHHhhccCCHHHHHHHHHhcC
Q psy12373 81 VRVDLDHLNDIRHAVDIVKAKK 102 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~~~ 102 (198)
|.++| ....|++|.++|..+.
T Consensus 1033 v~ll~-ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1033 VALLC-KAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHh-hHhHHHHHHHHHHhcc
Confidence 99999 8899999999998776
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.20 E-value=0.00022 Score=54.96 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=69.3
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVD 84 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~ 84 (198)
+..|...|++++|++.+.++- .. ...+...+..+|..+...|++++|+++|.++-.. .....++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l------~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKAL------EH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHH------Hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 455556666666666665431 11 1235567778889999999999999998877432 2234455
Q ss_pred hhccCCHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 85 LDHLNDIRHAVDIVKAKK-------CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~~~-------~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
. ..|++++|.....+.- .......++..+...|++++|+.+|.++
T Consensus 110 ~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 110 C-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred H-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 6688888877665421 1223345677777778887777777664
No 40
>KOG4626|consensus
Probab=98.18 E-value=6.8e-05 Score=67.14 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--HHHH------HHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--DNVV------RVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYC 114 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~av------~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~ 114 (198)
.+.+..+|..+...+.|+.|+.+|++|-.. ..|+ -+|. ..|.+|-|++.=++ .|. +++...+|+.+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 467788899999999999999999988532 1222 2233 34666666544332 233 44555788888
Q ss_pred HhcCCHHHHHHHHHHcCC----hHHHH----HHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 115 NKHGDFGAAIHFLILSKC----YQDAF----NLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 115 ~~~g~~~~Av~~y~~ag~----~~~A~----~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
...|++.+|+..|.+|=. +-+|+ .+..+.++++....+-. +. .+.-...+..+|..|.++|++.+|
T Consensus 331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence 888888888888876633 11221 11223333322211111 11 123345666777777777777777
No 41
>KOG1840|consensus
Probab=98.12 E-value=0.00011 Score=65.18 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=92.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-------------
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD------------- 78 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~------------- 78 (198)
.+.+|...+.++.|+.+|.++-+......=-.+.....++..+|..+-+.|.+++|..++.++=++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3444444455555555544432222210000011245677788888888899888888888875442
Q ss_pred ---HHHHHHhhccCCHHHHHHHHHhc-------CC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHcCCh---------
Q psy12373 79 ---NVVRVDLDHLNDIRHAVDIVKAK-------KC-----TE-GAKRIADYCNKHGDFGAAIHFLILSKCY--------- 133 (198)
Q Consensus 79 ---~av~l~~~~~~~~~~a~~l~~~~-------~~-----~~-~~~~~A~~~~~~g~~~~Av~~y~~ag~~--------- 133 (198)
+..-+++ ..|+.+.|..+.... +. .. .-..+|.-+...|.+++|.++|.+|=..
T Consensus 327 ~l~~~~~~~~-~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 327 QLSELAAILQ-SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2233344 567777776665421 11 11 1225677788889998888888776221
Q ss_pred -HHH---HHHH---HHcchhh----HHh---hhh-hhcC--CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 134 -QDA---FNLS---QQHKKLH----EFG---KFL-LEED--EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 134 -~~A---~~la---~~~~~~~----~~~---~~~-~l~~--~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+ -.|+ .+.+... .+. .|+ ..++ +.+..++..+|..|...|+|+.|
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 111 0111 1111111 111 111 1233 35577999999999999999999
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.10 E-value=0.00097 Score=57.68 Aligned_cols=174 Identities=7% Similarity=-0.023 Sum_probs=86.4
Q ss_pred cchHHHHHHHHHHcCC----HH-----HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGN----YE-----KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~----~~-----~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
.|.++.|.++|.++.. .. .+.+++...|+++.|...++. .+++..+..++..+...|+|++|++.+
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3566666666665422 11 235566666677666555542 125566666666677777777777555
Q ss_pred HHhcCH-----HH-------H----HHHHhhccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 72 ERAEDY-----DN-------V----VRVDLDHLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 72 ~ka~~~-----~~-------a----v~l~~~~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+.... .. + +.... ...+.+...++.+..| ++.....+|+.+...|+.++|.....++
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 554411 10 0 11111 1112222333322221 3444455677777777777666555433
Q ss_pred CC---hHHHHHHHHH--cchhhHHhhhh-h-hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KC---YQDAFNLSQQ--HKKLHEFGKFL-L-EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~---~~~A~~la~~--~~~~~~~~~~~-~-l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
=. ....+.+.-+ .+..+..-+.+ . +. .+.+|..+..+|+.+...++|++|
T Consensus 290 l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 290 LKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 22 1111211111 12221111111 0 22 356788888888888888888888
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.07 E-value=0.00045 Score=53.22 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHcC--CH------HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAG--NY------EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g--~~------~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
.|.+++|.+.|+++= ++ .....+|...|+++.+.....+ ..++.....+|..+...|++++|+++|.
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 377888888887642 11 2234566777888887666642 2356778889999999999999999999
Q ss_pred HhcC----------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHH
Q psy12373 73 RAED----------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF 137 (198)
Q Consensus 73 ka~~----------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~ 137 (198)
++-. +.....++. ..|++++|.....+ .| ++.....+|..+...|++++|+.++.++-.
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----- 197 (234)
T TIGR02521 124 QAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ----- 197 (234)
T ss_pred HHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 9742 122344555 67899998876653 22 233444567777777777777666554322
Q ss_pred HHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 138 NLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 138 ~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+ .+.++..+...+..+...|++++|
T Consensus 198 -----------------~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 198 -----------------T-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred -----------------h-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 1 122455555666666666766666
No 44
>KOG4626|consensus
Probab=98.04 E-value=0.00013 Score=65.40 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=99.6
Q ss_pred HHHHHcCCHHHHHHHHHHccC---------------------HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHH
Q psy12373 14 TLYESAGNYEKAATCYIQLKN---------------------WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRES 67 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~---------------------~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A 67 (198)
..|..++.+++|+.+|.++-+ .+.|.+-.++ ..=+..+..+|..+...|+..+|
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHH
Confidence 446667788888888876522 2333333221 11356777889999999999999
Q ss_pred HHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhc----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373 68 VGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK----KCT-EGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134 (198)
Q Consensus 68 ~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~----~~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~ 134 (198)
+.+|.++-.+ .+.-.++. ..|.+++|.++-+.. |.. +..-.+|..|..+|.+++||..|..+=+..
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9999887532 33445555 457777777765432 222 233467888888899999988887665532
Q ss_pred HHHHH--------HHHcchhhHHhhhh--hhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 135 DAFNL--------SQQHKKLHEFGKFL--LEE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 135 ~A~~l--------a~~~~~~~~~~~~~--~l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
--|.= +++-|..+...... .+. .+.-.+.+..+|..|.+.|+..+|
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 22111 22223222111111 011 223466788888888888888777
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.00 E-value=0.00082 Score=64.40 Aligned_cols=148 Identities=10% Similarity=0.009 Sum_probs=88.0
Q ss_pred HccCHHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----HHHHHHHhhcc---CCHHHHHHHH
Q psy12373 31 QLKNWTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY-----DNVVRVDLDHL---NDIRHAVDIV 98 (198)
Q Consensus 31 ~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----~~av~l~~~~~---~~~~~a~~l~ 98 (198)
..|+++.|....++ .+........|..+...|++++|+.+|.++-.. .....+.. .. |++++|....
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~-~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA-QRYIPGQPELALNDL 599 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHhCCCHHHHHHHH
Confidence 44555554444332 123344566788888888998888888776432 12222222 33 8888887765
Q ss_pred Hh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH--H--H-H---HHHHHcchhhHH----hhhhhhcCCCCHH
Q psy12373 99 KA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ--D--A-F---NLSQQHKKLHEF----GKFLLEEDEPNPV 162 (198)
Q Consensus 99 ~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~--~--A-~---~la~~~~~~~~~----~~~~~l~~~~~~~ 162 (198)
++ .|++.....+|..+.+.|++++|+..|.++=..+ . + . .+..+.|.++.. ..++.+ .+.++.
T Consensus 600 ~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~ 678 (987)
T PRK09782 600 TRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPA 678 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH
Confidence 43 3555555577888888899988888776543311 0 0 0 111222332221 222112 346788
Q ss_pred HHHHHHHHHHhCCChhhH
Q psy12373 163 ELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 163 ~~~~~A~~~e~~g~~~~A 180 (198)
.+..+|..+...|++++|
T Consensus 679 a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHHHHHHHCCCHHHH
Confidence 999999999999998888
No 46
>KOG0985|consensus
Probab=97.95 E-value=0.00096 Score=62.80 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=110.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcc----CH-------------------HHHHhhhhccC--ChHHHHHHHHHHHHcCCHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLK----NW-------------------TKIGQLLPHIK--SATTFIQYAKAKEAMGSYR 65 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~----~~-------------------~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~ 65 (198)
-..+.|..++-+...|++..+.- -| .++.+.+.+++ |.+ .+|...-+.+.|+
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~---~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP---DIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch---hHHHHHhhhhHHH
Confidence 35677888888888888877541 11 12233333333 222 4677788899999
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHHHHHHHH
Q psy12373 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDAFNLSQQ 142 (198)
Q Consensus 66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A~~la~~ 142 (198)
+|-..|.+-....+||.+++++.+..|+|...+.+-..|++-.++|+.-...|.+.+||+-|+||.+ |.+.+++|.+
T Consensus 1066 EAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1066 EAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASR 1145 (1666)
T ss_pred HHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988999999999999999999999987 5567888888
Q ss_pred cchhhHHhhh
Q psy12373 143 HKKLHEFGKF 152 (198)
Q Consensus 143 ~~~~~~~~~~ 152 (198)
.+.++.+..-
T Consensus 1146 ~~~~edLv~y 1155 (1666)
T KOG0985|consen 1146 TGKYEDLVKY 1155 (1666)
T ss_pred cCcHHHHHHH
Confidence 8888655443
No 47
>KOG1840|consensus
Probab=97.94 E-value=0.0002 Score=63.68 Aligned_cols=145 Identities=21% Similarity=0.213 Sum_probs=88.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc------cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH------IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
-+.+|...|++++|+..+..+- +++.+ ..-...+.++|..+-+.+.+.+|+.+|.+| +.+..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al------~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A------L~i~e 272 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQAL------RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA------LTIRE 272 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHH------HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHHH
Confidence 6777888888888888876552 22221 113345557999999999999999999998 55554
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHH-----------------------------HHHHHHHHcCChHHH
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFG-----------------------------AAIHFLILSKCYQDA 136 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~-----------------------------~Av~~y~~ag~~~~A 136 (198)
+..|.-+.++..+ ...+|..|-+.|++. .....+...+.+++|
T Consensus 273 ~~~G~~h~~va~~--------l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 273 EVFGEDHPAVAAT--------LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HhcCCCCHHHHHH--------HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 4444433222111 112333333344433 344455555666666
Q ss_pred HHHHHHcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 137 FNLSQQHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 137 ~~la~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+++.. ...+..+ .+. ...+..+.++|..|...|+|.+|
T Consensus 345 ~~l~q~a--l~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 345 KKLLQKA--LKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHHH--HHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 6666533 1222222 232 25678888899988888888888
No 48
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.0011 Score=48.99 Aligned_cols=99 Identities=23% Similarity=0.195 Sum_probs=71.2
Q ss_pred HccCHHHHHh----hhhccC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCH
Q psy12373 31 QLKNWTKIGQ----LLPHIK-S---ATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDI 91 (198)
Q Consensus 31 ~~~~~~~a~~----l~~~~~-~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~ 91 (198)
..+++..+.. ++...+ + ......+|+.+...|++++|++.|.++-+- .+..++++ ..|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCH
Confidence 3566665544 333333 2 345557899999999999999999887632 23456777 78999
Q ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 92 RHAVDIVKAKKCT----EGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 92 ~~a~~l~~~~~~~----~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
++|..+....+++ ......|..+...|++++|+..|.+|
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999998764332 23345788899999999999999875
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.88 E-value=0.004 Score=59.83 Aligned_cols=131 Identities=10% Similarity=-0.062 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHHhc----CCH-HHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVKAK----KCT-EGAKRIADYCNK 116 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~~~----~~~-~~~~~~A~~~~~ 116 (198)
.....+|..+...|++++|+..|.++.. +.....++. ..|++++|....++. |+. .....++..+..
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 3455668888999999999999998754 223345566 679999988876532 221 122234445556
Q ss_pred cCCHHHHHHHHHHcCCh-------HHHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 117 HGDFGAAIHFLILSKCY-------QDAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~-------~~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.|++++|+.+|.++=.. ...-.++.+.|..+.....+. +. .+.++..+..++..+.+.|++++|
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 69999999998877531 111233344555543333321 22 456789999999999999999888
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.82 E-value=0.0034 Score=54.35 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HccCHHHHHhhhhcc----CChHHHHHH-HHHHHHcCCHHHHHHHHHHhcCH----H-----HHHHHHhhccCCHHHHHH
Q psy12373 31 QLKNWTKIGQLLPHI----KSATTFIQY-AKAKEAMGSYRESVGAYERAEDY----D-----NVVRVDLDHLNDIRHAVD 96 (198)
Q Consensus 31 ~~~~~~~a~~l~~~~----~~~~l~~~~-A~~~e~~g~~~~A~~~Y~ka~~~----~-----~av~l~~~~~~~~~~a~~ 96 (198)
-.|+|++|.+++... +.+.+..-+ |......|+++.|.++|.++... . .+.+++. ..|+++.|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHH
Confidence 357777776666532 245666656 55559999999999999997642 1 2356788 7899999988
Q ss_pred HHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHH--H--------HH---HHHcchhhHHhhhh-h
Q psy12373 97 IVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDA--F--------NL---SQQHKKLHEFGKFL-L 154 (198)
Q Consensus 97 l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A--~--------~l---a~~~~~~~~~~~~~-~ 154 (198)
..++ .| ++.+...++..+...|++++|++++.+... .+.. - .+ .......+.+..++ .
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7754 33 356666788889999999999966655543 2111 1 11 11111122223322 1
Q ss_pred hc--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 155 EE--DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 155 l~--~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+. ...+|.....+|..+...|+..+|
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 22 245788999999999999999988
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.81 E-value=0.0014 Score=54.38 Aligned_cols=158 Identities=13% Similarity=-0.066 Sum_probs=94.1
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVD 84 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~ 84 (198)
+.+|...|+++.|+..|.++ ..+ ..+++..+..+|..+...|++++|++.|.++=.. .....++
T Consensus 71 g~~~~~~g~~~~A~~~~~~A------l~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQA------LAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHH------HHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33455556666665544332 222 2347789999999999999999999999998432 2222334
Q ss_pred hhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC------ChHHHHHHHHHcchh---hHHhh
Q psy12373 85 LDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK------CYQDAFNLSQQHKKL---HEFGK 151 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag------~~~~A~~la~~~~~~---~~~~~ 151 (198)
. ..|++++|++..+. .|+......+.......+++++|+..|.++- .|.-++.. ...+.. +.+..
T Consensus 143 ~-~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~ 220 (296)
T PRK11189 143 Y-YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVE-FYLGKISEETLMER 220 (296)
T ss_pred H-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHH-HHccCCCHHHHHHH
Confidence 4 67999999877654 2322112233334566788999999995422 12111111 112221 11222
Q ss_pred hhh-hc-----CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 152 FLL-EE-----DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 152 ~~~-l~-----~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.. +. .+..++.+..+|..++..|++++|
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 210 11 123457899999999999999999
No 52
>KOG0276|consensus
Probab=97.80 E-value=0.00045 Score=61.67 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHH
Q psy12373 19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIV 98 (198)
Q Consensus 19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~ 98 (198)
+.|++.=-++-.++|+.+-|..|+.+.++..=..++|+..-+.|++..|.+||.++.|+.+.+=++- -.|+-+....++
T Consensus 637 s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t-~~g~~~~l~~la 715 (794)
T KOG0276|consen 637 STDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYT-SSGNAEGLAVLA 715 (794)
T ss_pred CCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhh-hcCChhHHHHHH
Confidence 3444444456677888888888888888888888999999999999999999999999999998888 778877655555
Q ss_pred Hhc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 99 KAK---KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 99 ~~~---~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
... .....+ .++ +-..|++++.++++++.+++.+|.=+|..+.- +...+++
T Consensus 716 ~~~~~~g~~N~A-F~~--~~l~g~~~~C~~lLi~t~r~peAal~ArtYlp-s~vs~iv 769 (794)
T KOG0276|consen 716 SLAKKQGKNNLA-FLA--YFLSGDYEECLELLISTQRLPEAALFARTYLP-SQVSRIV 769 (794)
T ss_pred HHHHhhcccchH-HHH--HHHcCCHHHHHHHHHhcCcCcHHHHHHhhhCh-HHHHHHH
Confidence 432 211111 122 23569999999999999999999888887754 4445554
No 53
>KOG1586|consensus
Probab=97.79 E-value=0.00059 Score=54.55 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHH
Q psy12373 49 TTFIQYAKAKEAM-GSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 49 ~l~~~~A~~~e~~-g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l 97 (198)
..+..+|.++|+. .+++.||.+|+.+++| .++....- .+++..+|+++
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa-~leqY~~Ai~i 176 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA-QLEQYSKAIDI 176 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4456789999988 9999999999999987 12222222 56677777766
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.0019 Score=59.72 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------H
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------D 78 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~ 78 (198)
...++.+..++.|...++.+-.-+ +..+++. .++.+.+..+|+.....|.+++|...+.++=.+ .
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~ 124 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPE------LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI 124 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHH------HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH
Confidence 345566666666666555544332 3333433 347899999999999999999999999998643 2
Q ss_pred HHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
.-.+++. +.+++++|...+++. | +.......|..+...|++++|+.+|.++-.
T Consensus 125 ~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------------------- 182 (694)
T PRK15179 125 LMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------------------- 182 (694)
T ss_pred HHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---------------------
Confidence 3355666 789999998887653 3 345566789999999999999999987642
Q ss_pred hhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 154 LEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+..++.+...|..++..|+.++|
T Consensus 183 --~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 183 --QHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred --cCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 1123456666666666666666666
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.69 E-value=0.0077 Score=52.26 Aligned_cols=174 Identities=9% Similarity=0.029 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHc----CCHH----H-HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA----GNYE----K-AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 7 ~~~~~Aa~~y~~~----g~~~----~-Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
|.++.|.++|.++ ++.. . ..+++...|+++.|...+.. ..++.++..++..+...|+|++|.+.+.
T Consensus 132 g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 132 GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6677777777663 3322 1 36666677888776555542 2366777788888888888887777766
Q ss_pred HhcC-----HHHHH----HHHhh------ccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 73 RAED-----YDNVV----RVDLD------HLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 73 ka~~-----~~~av----~l~~~------~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+... ..... ..... .....+...++....| ++.....+|..+...|++++|++...++=.
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 6541 12111 11110 0111223333344444 445555677778888888888877776643
Q ss_pred --hHHH------HHHHHHc--chhhHHhhhhh--hc-CCCCH--HHHHHHHHHHHhCCChhhH
Q psy12373 133 --YQDA------FNLSQQH--KKLHEFGKFLL--EE-DEPNP--VELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 133 --~~~A------~~la~~~--~~~~~~~~~~~--l~-~~~~~--~~~~~~A~~~e~~g~~~~A 180 (198)
|+.. ++.+..- +..+...+.+. +. .+.+| .....+|..+...|+|++|
T Consensus 292 ~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 2222 2211111 11111222211 22 35567 7777888888888888887
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.66 E-value=0.022 Score=53.46 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc---c--CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH---I--KSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|.+++|.++|.++.. ......++...+++..|..+... . .++.....+|..+...|++++|+.++.+
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666543 23344456666777766666554 2 2556666777777777777777777766
Q ss_pred hcC-------HHHHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 74 AED-------YDNVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 74 a~~-------~~~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+-. +.....++. ..|+.++|....++ .|+ +.....++..+...|+.++|+..+.++
T Consensus 109 ~l~~~P~~~~~~~la~~l~-~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 109 LVSGAPDKANLLALAYVYK-RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 521 222233344 56777776655432 232 333345566666666666666665543
No 57
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.65 E-value=0.00037 Score=45.75 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
..++..+|..+...|+|++|+++|.++ +++.. ..|+... .+ ......+|..+...|++++|+++|
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~--~~------a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKA------LDIEE-QLGDDHP--DT------ANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-HTTTHHH--HH------HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-HHCCCCH--HH------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356788999999999999999999999 88843 6666331 11 112447899999999999999998
Q ss_pred HHcC
Q psy12373 128 ILSK 131 (198)
Q Consensus 128 ~~ag 131 (198)
.++=
T Consensus 70 ~~al 73 (78)
T PF13424_consen 70 QKAL 73 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 58
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=97.63 E-value=2.6e-06 Score=62.91 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=80.7
Q ss_pred HHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373 22 YEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK 101 (198)
Q Consensus 22 ~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~ 101 (198)
....+.+|++.+..+++.+++...+.-+ ....++.++..|.+++|+-+|.+.|++.+|++++. .+++|+.|++.+.+.
T Consensus 45 ~~~L~~ly~~~~~~~~l~~~L~~~~~yd-~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~-~~~~~~~a~e~~~~~ 122 (143)
T PF00637_consen 45 HTLLLELYIKYDPYEKLLEFLKTSNNYD-LDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILH-KLKDYEEAIEYAKKV 122 (143)
T ss_dssp HHHHHHHHHCTTTCCHHHHTTTSSSSS--CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSS-STHCSCCCTTTGGGC
T ss_pred HHHHHHHHHhcCCchHHHHHcccccccC-HHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHH-HHccHHHHHHHHHhc
Confidence 4678889999988888888888655311 13578889999999999999999999999999955 889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q psy12373 102 KCTEGAKRIADYCNKHGD 119 (198)
Q Consensus 102 ~~~~~~~~~A~~~~~~g~ 119 (198)
++++....+.+++...+.
T Consensus 123 ~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SSSHHHHHHHHHHCTSTC
T ss_pred CcHHHHHHHHHHHHhcCc
Confidence 999988888888876654
No 59
>KOG2003|consensus
Probab=97.60 E-value=0.0008 Score=58.54 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
||+++|++.|..+-+-+. +-.+.+..+|-..+..|+.++|.++|.+. --+++
T Consensus 504 gd~dka~~~ykeal~nda--------sc~ealfniglt~e~~~~ldeald~f~kl------h~il~-------------- 555 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDA--------SCTEALFNIGLTAEALGNLDEALDCFLKL------HAILL-------------- 555 (840)
T ss_pred CcHHHHHHHHHHHHcCch--------HHHHHHHHhcccHHHhcCHHHHHHHHHHH------HHHHH--------------
Confidence 556666665544322222 22355667777888888888888888775 11222
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.+.++..++|+.|+...+..+||++|..+..
T Consensus 556 --nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 556 --NNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred --hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 2445566788888888888888888777655
No 60
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.57 E-value=0.002 Score=47.29 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCN 115 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~ 115 (198)
..++.++..+.+++++-+|.+.|.+..||+++++++++.+.|.+.+++..+++.-..+++++.
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l 136 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467788899999999999999999999999999666889999999988777777766666654
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=97.53 E-value=0.0026 Score=57.38 Aligned_cols=65 Identities=6% Similarity=-0.048 Sum_probs=45.7
Q ss_pred HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh
Q psy12373 35 WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 35 ~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
++.|...+.+ .+++..+..+|..+...|++++|+.+|.++-.. ...-.++. ..|++++|....++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 5666555542 237788888999999999999999999986421 22234455 67888888776654
No 62
>KOG1585|consensus
Probab=97.50 E-value=0.0012 Score=53.15 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHccCHHHHHhhhhccC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIK-----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-----------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
-.++.+++|.-.|..+++|+++...+.+.. ....+...|-.+.....+.+++.+|+|+ ..+|+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------s~lY~ 102 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------SELYV 102 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHH
Confidence 334444455556666666666543322111 0112222233333444455555555555 66666
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..|.+|-|.-- ...-|+. .+..+++.|+++|.++
T Consensus 103 -E~GspdtAAma---------leKAak~-lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 103 -ECGSPDTAAMA---------LEKAAKA-LENVKPDDALQLYQRA 136 (308)
T ss_pred -HhCCcchHHHH---------HHHHHHH-hhcCCHHHHHHHHHHH
Confidence 44554432111 1122333 3455678888887764
No 63
>KOG2114|consensus
Probab=97.49 E-value=0.0048 Score=57.07 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---HHHHHHHhhccCCHH
Q psy12373 21 NYEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY---DNVVRVDLDHLNDIR 92 (198)
Q Consensus 21 ~~~~Ai~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---~~av~l~~~~~~~~~ 92 (198)
+.+.-+.+.++-..|..|..|++..+ ...++..+|.++-..|++++|...|+++=.+ ...|.=+. ......
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfL-daq~Ik 414 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFL-DAQRIK 414 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhc-CHHHHH
Confidence 55666778888888999999998654 4568889999999999999999999998644 34444444 222222
Q ss_pred HHHHHHHhc-----CCHHHHHHHHH------------HHHhcCC-------HHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373 93 HAVDIVKAK-----KCTEGAKRIAD------------YCNKHGD-------FGAAIHFLILSKCYQDAFNLSQQHKKL 146 (198)
Q Consensus 93 ~a~~l~~~~-----~~~~~~~~~A~------------~~~~~g~-------~~~Av~~y~~ag~~~~A~~la~~~~~~ 146 (198)
....+.... .+.+....+=. -|.+.++ ++.|++...+++..++|..||..+++-
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h 492 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH 492 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence 232222211 11111111111 2344444 778888888888888888888887763
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.48 E-value=0.0019 Score=47.85 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=57.6
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH 93 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~ 93 (198)
..+.+.|+++.|+++|..+ .++ ...+...+..+|..+...|++++|+.+|.++ +.+--
T Consensus 32 ~~~~~~g~~~~A~~~~~~a------l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A------l~l~p-------- 89 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWL------VMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHA------LMLDA-------- 89 (144)
T ss_pred HHHHHcCCHHHHHHHHHHH------HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC--------
Confidence 3444455555555554332 111 2336777888888888888888888888887 43211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 90 --------~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 90 --------SHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred --------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23455667888888999999999888665
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.42 E-value=0.0045 Score=50.75 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..|+.|..++.+.|++++|+..|.. ......... .+..++|+|..+...|++++|+..|.+. |..+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~------fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v------v~~yP 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQN------FVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV------VKNYP 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH------HHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHCC
Confidence 3456666666666777777666421 122211111 3689999999999999999999998776 65554
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+. . ..++....+|..+...|++++|+..|.+.
T Consensus 212 ~s-~------------~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 212 KS-P------------KAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred CC-c------------chhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1 12344556777788888888888887643
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.40 E-value=0.013 Score=46.43 Aligned_cols=123 Identities=17% Similarity=0.104 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------HHHH----HHHhh-------ccCCHHHHHHHHH----hcCCHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-------DNVV----RVDLD-------HLNDIRHAVDIVK----AKKCTEG 106 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av----~l~~~-------~~~~~~~a~~l~~----~~~~~~~ 106 (198)
..+..+|..+...|++++|+..|.++-.. ..+. .++.. ..|++++|.+... ..|+...
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 46678899999999999999999987321 0111 11110 1156666665543 3343221
Q ss_pred ----HHHHHHHHHhcCCH-HHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhh
Q psy12373 107 ----AKRIADYCNKHGDF-GAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLT 179 (198)
Q Consensus 107 ----~~~~A~~~~~~g~~-~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~ 179 (198)
...++......+.. ..-..+|.+.|++.+|+...... +..-+ +..++.+..++..+...|++++
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV---------VENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH---------HHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 11122221111111 12335677888888887766433 11122 2347889999999999999988
Q ss_pred H
Q psy12373 180 S 180 (198)
Q Consensus 180 A 180 (198)
|
T Consensus 222 A 222 (235)
T TIGR03302 222 A 222 (235)
T ss_pred H
Confidence 8
No 67
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.28 E-value=0.016 Score=42.38 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc-chhhHHhhhhhhcCCCCHHHHHHHHHHHHh
Q psy12373 108 KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH-KKLHEFGKFLLEEDEPNPVELKRLAIHFEE 173 (198)
Q Consensus 108 ~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~ 173 (198)
..+++.|.+.+-+++++-+|.+.|.+.+|++++.++ +..+.+.+. .....+|++...++.++.+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~--~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEY--FVKQNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHH--HHhCCCHHHHHHHHHHHHc
Confidence 345666777777888888888888888888888777 555444443 3445678888888887754
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=97.24 E-value=0.013 Score=52.93 Aligned_cols=124 Identities=9% Similarity=-0.074 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHcCCH-----H---HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNY-----E---KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~-----~---~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+.+++|...+.++=.. + ....++...|+++.|...+++ .+++..+..+|..+...|++++|+.+|.+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4577888887765221 1 223356677888887766653 23677889999999999999999999999
Q ss_pred hcCH--------HHHHHHHhhccCCHHHHHHHHHhc-----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKAK-----K-CTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~~-----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+-.. .....++. ..|++++|...+++. | .+.....+|..+...|++++|+..+.+.-
T Consensus 398 Al~l~P~~~~~~~~~~~~~~-~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITY-YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCChhhHHHHHHHHH-hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 7421 11122355 568999998877542 2 24445568888999999999999987643
No 69
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.021 Score=48.15 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHH------------H-HHHHhcCC
Q psy12373 58 KEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRI------------A-DYCNKHGD 119 (198)
Q Consensus 58 ~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~------------A-~~~~~~g~ 119 (198)
+-..|+...|.++-..-+= |---|+.++ ..++|++..+.+..-.+|-..... | +|..+..+
T Consensus 187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa-~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALA-ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 3456777777766444332 233477777 679999999988754444322222 2 23333444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPV 162 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~ 162 (198)
++-+++|+++|.|.+|++.|.+.+..+.+..+....+..++.
T Consensus 266 -~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~ 307 (319)
T PF04840_consen 266 -EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQ 307 (319)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChH
Confidence 788999999999999999999999988888875333333333
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.23 E-value=0.036 Score=48.08 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=96.9
Q ss_pred HHHccCHHHHHhhhhc----cCChHHHH-HHHHHHHHcCCHHHHHHHHHHh----cCHH-----HHHHHHhhccCCHHHH
Q psy12373 29 YIQLKNWTKIGQLLPH----IKSATTFI-QYAKAKEAMGSYRESVGAYERA----EDYD-----NVVRVDLDHLNDIRHA 94 (198)
Q Consensus 29 y~~~~~~~~a~~l~~~----~~~~~l~~-~~A~~~e~~g~~~~A~~~Y~ka----~~~~-----~av~l~~~~~~~~~~a 94 (198)
-...|+|..|.+.+.+ .+++.+.. ..|+.....|+++.|.++|.++ ++.. ...++++ ..|+++.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHH
Confidence 3355677776555542 23444444 4488899999999999999995 3322 1367777 67999998
Q ss_pred HHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh-----HHHHH---HHH--------HcchhhHHhhhh
Q psy12373 95 VDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY-----QDAFN---LSQ--------QHKKLHEFGKFL 153 (198)
Q Consensus 95 ~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~-----~~A~~---la~--------~~~~~~~~~~~~ 153 (198)
....+. .| ++.+...++..+...||+++|++++.+..+. .+... .+. .....+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 876643 34 4566678899999999999888777655521 11111 111 111112223322
Q ss_pred hhcC---CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 154 LEED---EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 154 ~l~~---~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
...+ ..++......|..+...|++++|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 1111 14789999999999999999998
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.20 E-value=0.0034 Score=45.21 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..|.+.|+++.|++++.+. ..+ ...++.....+|..+...|++++|+.+|.++ +.+.
T Consensus 24 a~~~~~~~~~~~A~~~~~~~------~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~-------- 81 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLL------AAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALA------AALD-------- 81 (135)
T ss_pred HHHHHHcccHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcC--------
Confidence 34444555555555554222 111 2235666777777777777777777777665 2221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..++.....+|..+...|++++|+..|.++
T Consensus 82 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 --------PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred --------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123455667888888889999888877543
No 72
>KOG2114|consensus
Probab=97.19 E-value=0.039 Score=51.31 Aligned_cols=137 Identities=12% Similarity=0.215 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHc--------CCHHHHHHHHHHhcCHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAM--------GSYRESVGAYERAEDYD 78 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~--------g~~~~A~~~Y~ka~~~~ 78 (198)
+.+..++.+.-+.||++.|+.-|++.=.+-.-..++.+.-++..+..+..++|.- ....-=+.+|.|.+|.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 4567888888889999999999998766666667777777888888888888743 23444577899998877
Q ss_pred HHHHHHhhccC------CHHHHHHHHHhcCCHHHHHHHHHHH-----------HhcCCHHHHHHHHHHcCChHHHHHHHH
Q psy12373 79 NVVRVDLDHLN------DIRHAVDIVKAKKCTEGAKRIADYC-----------NKHGDFGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 79 ~av~l~~~~~~------~~~~a~~l~~~~~~~~~~~~~A~~~-----------~~~g~~~~Av~~y~~ag~~~~A~~la~ 141 (198)
+.-..-. ... +.+.|++|+++.+-.+.+..+|.-+ +..+++++|+.+..+ =-++++++...
T Consensus 449 kL~efI~-~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s-lp~~e~l~~l~ 526 (933)
T KOG2114|consen 449 KLTEFIS-KCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS-LPISELLRTLN 526 (933)
T ss_pred HHHHHHh-cCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHH
Confidence 7544333 322 4777888888877666666666543 556777777765443 45677777776
Q ss_pred Hcch
Q psy12373 142 QHKK 145 (198)
Q Consensus 142 ~~~~ 145 (198)
+.|.
T Consensus 527 kyGk 530 (933)
T KOG2114|consen 527 KYGK 530 (933)
T ss_pred HHHH
Confidence 6664
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.18 E-value=0.033 Score=52.27 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-----C---HH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE-----D---YD 78 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~-----~---~~ 78 (198)
++..+..++..-.|+.+.|+++|.+. ..+ .......+..+|..+...|++++|+++|.++- + +.
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~------~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRY------RVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------Hhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44556677778888888888766433 111 22345568889999999999999999999942 2 23
Q ss_pred HHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
....++. ..|++++|..++++ .|+ +. ...+|..+...|++++|+..|.++-
T Consensus 88 ~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 88 GLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345556 67999998877654 333 34 5567777888888888877776543
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.0037 Score=41.67 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
......+|..+-..|+|++|++++.+. .++ ..++.....+|+-+.+.|++++|++.|
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~~---------------~~~--------~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQKL---------------KLD--------PSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHCH---------------THH--------HCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHh---------------CCC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345555688777777777777776551 000 011233456688888889999998888
Q ss_pred HHc
Q psy12373 128 ILS 130 (198)
Q Consensus 128 ~~a 130 (198)
.++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
No 75
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.16 E-value=0.0047 Score=46.59 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=57.9
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l 97 (198)
..|+++.|..+|..+-.+ ...+...+..+|-.+...|+|.+|+.+|.++ +.+-.
T Consensus 47 ~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A------~~L~~------------ 100 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA------AQIKI------------ 100 (157)
T ss_pred HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC------------
Confidence 447777777666443221 1236677778899999999999999999988 32222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+|......|.-+...|+.+.|.+.|..+
T Consensus 101 ----ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 101 ----DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred ----CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24555667788888889999888776544
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.15 E-value=0.013 Score=46.92 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhc----------CHHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAE----------DYDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRI 110 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----------~~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~ 110 (198)
.+-+++..+|-++...|.+++|...|.+|- .++++.=|.. +.|+.+.|....++. | .+.....+
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l~~ 179 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALLEL 179 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence 367899999999999999999999998874 4678887888 889999998877642 2 24456678
Q ss_pred HHHHHhcCCHHHHHHHHHHcCCh--------HHHHHHHHHcchh
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCY--------QDAFNLSQQHKKL 146 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~--------~~A~~la~~~~~~ 146 (198)
|+...+.|++-.|..++.+-..- --.++|++..|.-
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 88888889998888777664432 2236666666654
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.15 E-value=0.011 Score=44.48 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+-+.++.+|-.+...|++++|+++|.-. +.+ + +.++.-...+|-.+...|++.+||..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L--------~~~----D----------p~~~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLL--------TIY----D----------AWSFDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHh----C----------cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4456778899999999999999998765 111 1 11233455688889999999999999
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhh
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCS 193 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~ 193 (198)
|.+|.. |+ +.+|..+...|..+...|+.+.|.++ +..||..|
T Consensus 92 Y~~A~~----------------------L~-~ddp~~~~~ag~c~L~lG~~~~A~~a--F~~Ai~~~ 133 (157)
T PRK15363 92 YGRAAQ----------------------IK-IDAPQAPWAAAECYLACDNVCYAIKA--LKAVVRIC 133 (157)
T ss_pred HHHHHh----------------------cC-CCCchHHHHHHHHHHHcCCHHHHHHH--HHHHHHHh
Confidence 998876 34 36788899999999999998888222 34445544
No 78
>KOG1126|consensus
Probab=97.13 E-value=0.0058 Score=55.03 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHH-------------------------HHhhhhccC-ChHHHHHHHHHHHHcCCH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTK-------------------------IGQLLPHIK-SATTFIQYAKAKEAMGSY 64 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~-------------------------a~~l~~~~~-~~~l~~~~A~~~e~~g~~ 64 (198)
+.++.|=.-++|++|.++|...++.+- +..|++.-. .|+...-+|+-|.-++++
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 455566666888888888887766431 122222222 677777789999999999
Q ss_pred HHHHHHHHHhcCHHH----HHHHHh-h--ccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 65 RESVGAYERAEDYDN----VVRVDL-D--HLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 65 ~~A~~~Y~ka~~~~~----av~l~~-~--~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+.|+++|.||-..+. |-.++. | ....+|+|+..-+.. +...+-+=++-.+.++++++.|.-+|.+|-.
T Consensus 438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 999999999953322 222221 0 245667666554431 1223344466677788888888777777654
Q ss_pred hH--HHHH------HHHHcchh----hHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 133 YQ--DAFN------LSQQHKKL----HEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 133 ~~--~A~~------la~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.. .-+- +..+.+.. +.+.+++.+ +..+|--.+..|..+-..++|.+|
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcchHHH
Confidence 21 1110 01111111 122333222 234555566777777777777777
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.11 E-value=0.041 Score=43.02 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=63.1
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH-HHhhccCC--HHHHHHHHHh----cC-CHHHHH
Q psy12373 45 IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR-VDLDHLND--IRHAVDIVKA----KK-CTEGAK 108 (198)
Q Consensus 45 ~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~-l~~~~~~~--~~~a~~l~~~----~~-~~~~~~ 108 (198)
.++.+.+..+|+.+...|++++|+.+|.++-.. ..... ++. ..|+ .++|..+.++ .| ++....
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~-~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY-QAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 348889999999999999999999999998743 11122 233 4465 3777766653 23 345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.+|..+...|++++|+..|.++-.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888899999999988877643
No 80
>KOG1585|consensus
Probab=97.09 E-value=0.0094 Score=48.15 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=69.7
Q ss_pred cccchHHHHHHHHHHcCCHHHHHH-------HHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 4 GALTLDRGKWTLYESAGNYEKAAT-------CYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 4 ~~~~~~~~Aa~~y~~~g~~~~Ai~-------~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
|+-++|+.|+.-|..+.++++|-. .|...+.|..|..-.+... .+...+-.+-|-..-++.|+.+|...|.
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa--mLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA--MLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 344788899998888888876655 4555555555443333222 3344444555555566677777777776
Q ss_pred HHHH-------HHHHhhccCCHHHHHHH-------HHhcCCHHH----HHHHHHHHHhcCCHHHHHHHHHHcCChHHH
Q psy12373 77 YDNV-------VRVDLDHLNDIRHAVDI-------VKAKKCTEG----AKRIADYCNKHGDFGAAIHFLILSKCYQDA 136 (198)
Q Consensus 77 ~~~a-------v~l~~~~~~~~~~a~~l-------~~~~~~~~~----~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A 136 (198)
++-| -++.- .-++++|+.+ +.+...... .-.+++.+.+...+++|-.++.|-+.|-.-
T Consensus 107 pdtAAmaleKAak~le--nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALE--NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred cchHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 5333 22222 2344444433 322221111 123555666666676666666666665443
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.09 E-value=0.0023 Score=40.34 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..|.+.|+++.|+++|... +.. ..++..+..+|..+...|++++|+.+|.++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~---------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQA---------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHH---------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666777788887777433 322 237789999999999999999999999987
No 82
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.011 Score=50.43 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH 87 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~ 87 (198)
+..+|..+|.. |+++.|+++|.++ .++ ..++..++..+|..+...|++++|+..+.++ +++.-
T Consensus 5 l~~~a~~a~~~-~~~~~Ai~~~~~A------l~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A------l~l~P-- 67 (356)
T PLN03088 5 LEDKAKEAFVD-DDFALAVDLYTQA------IDL--DPNNAELYADRAQANIKLGNFTEAVADANKA------IELDP-- 67 (356)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc--
Confidence 34556555544 8899999888544 332 3346788889999999999999999888776 44322
Q ss_pred cCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 88 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 88 ~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
..+.....+|..+...|++++|+..|.++-
T Consensus 68 --------------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 68 --------------SLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred --------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 123445567888888899988888887654
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0032 Score=40.09 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIH 125 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~ 125 (198)
++..+...|..+...|++++|+.+|.++ |++.- .++.....+|..+...| ++++|++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a------i~~~p----------------~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA------IELDP----------------NNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH------HHHST----------------THHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CCHHHHHHHHHHHHHhCccHHHHHH
Confidence 4567888999999999999999999998 65432 12334667888899998 7999998
Q ss_pred HHHHc
Q psy12373 126 FLILS 130 (198)
Q Consensus 126 ~y~~a 130 (198)
.|.++
T Consensus 60 ~~~~a 64 (69)
T PF13414_consen 60 DFEKA 64 (69)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.05 E-value=0.0084 Score=44.40 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
|..+...|..+...|++++|+.+|.++ +++-- .++.....+|..+...|++++|+.+|
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWL------VMAQP----------------WSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444566788888889999988888875 32211 23444557888888889999888888
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++-. + .+..+..+..++..+...|++.+|
T Consensus 82 ~~Al~----------------------l-~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 82 GHALM----------------------L-DASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHh----------------------c-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 76533 2 245778888888888888888887
No 85
>KOG1155|consensus
Probab=96.97 E-value=0.011 Score=51.63 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh---cCCH--HHHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA---KKCT--EGAKRIADYCNK 116 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~---~~~~--~~~~~~A~~~~~ 116 (198)
..+-+|+.++.++...-|.-+|.+|-. |...=++|- .+++.++|++.=+. .++. .....+|+.+++
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 333446667777776666666666642 122233343 56666666554331 2222 233456666666
Q ss_pred cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 117 HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+|..+|..+|.+.=.. . ++-....+.+.+...-+|.||.+.++|++|
T Consensus 479 l~d~~eAa~~yek~v~~------~----------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEV------S----------ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHhHHHHHHHHHHHHHH------H----------HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 66666666665543211 0 000011223445666799999999999999
No 86
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.0023 Score=42.65 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHc----C-CHHH-----HHHHHHHccCHHHHHhhhhccC----ChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESA----G-NYEK-----AATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~----g-~~~~-----Ai~~y~~~~~~~~a~~l~~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
.+.|++|..+|++. . +++. ...+|.+.|+|.+|..++++.. +......+|+-+...|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35788888888765 1 2122 2678889999999999886532 4466777899999999999999999
Q ss_pred HHh
Q psy12373 72 ERA 74 (198)
Q Consensus 72 ~ka 74 (198)
.++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 87
>KOG0547|consensus
Probab=96.96 E-value=0.026 Score=49.70 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHcCC-HHHHHHHHHHccCHH-------HHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--H
Q psy12373 8 LDRGKWTLYESAGN-YEKAATCYIQLKNWT-------KIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--Y 77 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~-~~~Ai~~y~~~~~~~-------~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~ 77 (198)
.++.+.++...-.. |-+-..+|.+..+-. +|.+| ...+++++++-|+..--.+++++|+.=|.++-. +
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 45555555555554 444445555554433 23333 234889999999999999999999999999874 3
Q ss_pred HHH---HHHHhh--ccCCHHHHHHHHH----hcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC---------------
Q psy12373 78 DNV---VRVDLD--HLNDIRHAVDIVK----AKKC-TEGAKRIADYCNKHGDFGAAIHFLILSKC--------------- 132 (198)
Q Consensus 78 ~~a---v~l~~~--~~~~~~~a~~l~~----~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--------------- 132 (198)
.++ |++|+- +.+.+++.++.-. +.|+ +++--..|+.+..+++|++|++.|-+|-.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 332 444441 2357777665443 3444 55555789999999999999999877654
Q ss_pred hHHHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 133 YQDAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 133 ~~~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++|+-+.+=.+.+.....+++ +. ++.....+.-+|+.-.+.|+.++|
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 2344444432233332233321 12 223345667777877777777777
No 88
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0027 Score=41.56 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..=+..|...|++++|+.+|.++-+..+ .+-+. .....++..+|..+...|++++|+++|.++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEE--QLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556788899999999999987744411 11111 112456778899999999999999999998
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.85 E-value=0.018 Score=39.96 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHccCHHHHHhhhhcc----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHH
Q psy12373 27 TCYIQLKNWTKIGQLLPHI----K----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIV 98 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~----~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~ 98 (198)
..+...+++++|...+..+ + .+.....+|..+...|++++|+++|.++ +...- .
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~p-~----------- 71 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV------VKKYP-K----------- 71 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH------HHHCC-C-----------
Confidence 3455556666555444321 1 1234555566666666666666555554 22111 0
Q ss_pred HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 99 KAKK-CTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 99 ~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
++ .+.....+|..+...|++++|+.+|.+
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 72 --SPKAPDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred --CCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 01 123445667777777777777777644
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.085 Score=42.26 Aligned_cols=145 Identities=11% Similarity=0.056 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc---c--CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH---I--KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR 82 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~ 82 (198)
...+|++...+-|- -|...|++..|..-+++ + +....+.-.|.++...|+.+.|-+.|.+| +.
T Consensus 30 ~~~~aa~arlqLal------~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA------ls 97 (250)
T COG3063 30 DRNEAAKARLQLAL------GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKA------LS 97 (250)
T ss_pred cHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHH------Hh
Confidence 34556655555443 56677777777666653 2 24455666789999999999999999998 55
Q ss_pred HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----------hHHHHHHHHHcchhhHHhhh
Q psy12373 83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC----------YQDAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----------~~~A~~la~~~~~~~~~~~~ 152 (198)
+.- ..| ++.-.++-|+...|.+++|...|.+|=. |+.+.=-+.+.|+++...+.
T Consensus 98 l~p-~~G---------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 98 LAP-NNG---------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred cCC-Ccc---------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 443 222 2233455666666666666665555422 22222222333333322222
Q ss_pred h--hhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 153 L--LEE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 153 ~--~l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+ +|. ....|.....+|+-..+.|+|-.|
T Consensus 162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 162 LKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 1 122 233455666777777777777777
No 91
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.74 E-value=0.015 Score=44.84 Aligned_cols=85 Identities=24% Similarity=0.247 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-------CCHHHH-
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-------KCTEGA- 107 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-------~~~~~~- 107 (198)
.+..+..+|.++.+.|+++.|.++|.++-++ ...||+++ ..++|..+...+.+. .+.+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4567889999999999999999999999876 67788888 789999877665432 111111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 108 ---KRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 108 ---~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
..-|-++...++|..|.++|..+-.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1224455677888888888777654
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.72 E-value=0.095 Score=46.00 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-----
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----- 180 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----- 180 (198)
.-..+|+.|.+.|++. +|+++....- -..+.+|..+..+|+.|+..|+-.+|
T Consensus 376 l~~~~a~all~~g~~~-------------eai~~L~~~~----------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 376 LQLNLAQALLKGGKPQ-------------EAIRILNRYL----------FNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHHHHhcCChH-------------HHHHHHHHHh----------hcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 3446677666666655 4444443221 13567899999999999999998887
Q ss_pred ---HhcCChhhHHhhhh
Q psy12373 181 ---FRVSQQSRAMPCSS 194 (198)
Q Consensus 181 ---~~ag~~~~Al~l~~ 194 (198)
..+|++..|+..+.
T Consensus 433 E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 433 EGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 88999999987764
No 93
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.70 E-value=0.00028 Score=51.93 Aligned_cols=94 Identities=13% Similarity=0.220 Sum_probs=66.9
Q ss_pred HHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC
Q psy12373 80 VVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP 159 (198)
Q Consensus 80 av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~ 159 (198)
.+.+++ ..+..+++.++.+.+... ....+++.+.+.|.+++|+-+|.+.|++.+|++++...+.++...+. .....
T Consensus 48 L~~ly~-~~~~~~~l~~~L~~~~~y-d~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~--~~~~~ 123 (143)
T PF00637_consen 48 LLELYI-KYDPYEKLLEFLKTSNNY-DLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEY--AKKVD 123 (143)
T ss_dssp HHHHHH-CTTTCCHHHHTTTSSSSS--CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTT--GGGCS
T ss_pred HHHHHH-hcCCchHHHHHccccccc-CHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHH--HHhcC
Confidence 366666 444446666666654441 23357888899999999999999999999999985555555433333 35567
Q ss_pred CHHHHHHHHHHHHhCCCh
Q psy12373 160 NPVELKRLAIHFEEDKGV 177 (198)
Q Consensus 160 ~~~~~~~~A~~~e~~g~~ 177 (198)
+|++...+..++.+.+.+
T Consensus 124 ~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 124 DPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SSHHHHHHHHHHCTSTCT
T ss_pred cHHHHHHHHHHHHhcCcc
Confidence 799999999999887754
No 94
>KOG1155|consensus
Probab=96.70 E-value=0.019 Score=50.16 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
-=++.|++-++.+.||.||.++=.... .....+..+|+.+|..++..+|..+|++. |...- --|.
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~------v~~~~-~eg~ 501 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKY------VEVSE-LEGE 501 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHH-hhcc
Confidence 345667777777777777754311111 13467778888888888888888888887 55442 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.++= ...+...+|+||-+.+++++|-.+-.+.-.
T Consensus 502 ~~~~--------t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 502 IDDE--------TIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchH--------HHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1110 112344689999999999888776555544
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.67 E-value=0.031 Score=50.17 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHccCHHHHHhhhh----ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHH
Q psy12373 28 CYIQLKNWTKIGQLLP----HIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 28 ~y~~~~~~~~a~~l~~----~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a 94 (198)
+|-..|++++|...++ +.+ .++++..-|+.+...|++.+|.+....|... .+++.-++ +.|+.++|
T Consensus 203 hyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A 281 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEA 281 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHH
Confidence 3444455555544443 233 5788888999999999999999999999854 56777788 88999999
Q ss_pred HHHHHh
Q psy12373 95 VDIVKA 100 (198)
Q Consensus 95 ~~l~~~ 100 (198)
..++..
T Consensus 282 ~~~~~~ 287 (517)
T PF12569_consen 282 EKTASL 287 (517)
T ss_pred HHHHHh
Confidence 999874
No 96
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.65 E-value=0.14 Score=38.76 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+.+|...|++++|+.+|.++- .+..... ....+..+|..+...|++++|+.+|.++
T Consensus 42 g~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEAL------KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHH------HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566677777777765431 1111111 2356777888888888888888888776
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.038 Score=39.86 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH----HH-------HHHHHhhccCCHHHHHHHHHh----cCC---H-HHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY----DN-------VVRVDLDHLNDIRHAVDIVKA----KKC---T-EGAKR 109 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----~~-------av~l~~~~~~~~~~a~~l~~~----~~~---~-~~~~~ 109 (198)
.+++++|..+...|+.++|+.+|.++-.. .. .-..+. .+|+.++|..+.++ +|+ . .....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 56788999999999999999999988532 11 122233 68888888877653 233 1 12223
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q psy12373 110 IADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 110 ~A~~~~~~g~~~~Av~~y~ 128 (198)
+|-.+...|+.++|+..+.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 4445555555555555443
No 98
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.60 E-value=0.069 Score=48.99 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------HHHHHHhhccCCHHHHHH-----------HHHh------c
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYD----------NVVRVDLDHLNDIRHAVD-----------IVKA------K 101 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------~av~l~~~~~~~~~~a~~-----------l~~~------~ 101 (198)
.++..+.+.|+ ..+..+|.++|.-..+.. ..-++.+ ..++|+..+- +..+ .
T Consensus 329 rLI~~Y~~~F~-~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvl-etref~~LLG~i~~dG~r~~G~i~~~~~Li~~ 406 (613)
T PF04097_consen 329 RLIGQYTRSFE-ITDPREALQYLYLICLFKDPEQRNLFHECLRELVL-ETREFDLLLGDINPDGSRTPGLIERRLSLIKF 406 (613)
T ss_dssp HHHHHHHHTTT-TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHH-HH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH-ccCCHHHHCCCCCCCCccccceeeccccccCC
Confidence 45556677664 668999999998877642 2233333 3344544331 1111 1
Q ss_pred C-C----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh--c-------CCCCHHHHHHH
Q psy12373 102 K-C----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE--E-------DEPNPVELKRL 167 (198)
Q Consensus 102 ~-~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l--~-------~~~~~~~~~~~ 167 (198)
. . ......+|.-++..|.++.||.+|..||+|+.++++.... +.+++.. . .......-..+
T Consensus 407 ~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~-----Ls~~l~~~~~~~~~~s~~~~l~~la~~i 481 (613)
T PF04097_consen 407 DDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRL-----LSQVLSQPSSSSLSDSERERLIELAKEI 481 (613)
T ss_dssp SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHH-----HHHHHHCSSTSSSSSTTTTSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHcCccccccccchhhhHHHHHHHH
Confidence 1 1 1234568999999999999999999999999999998543 2333211 1 01123344445
Q ss_pred HHHHHhCCCh-----hhH----------------HhcCChhhHHhhhhh
Q psy12373 168 AIHFEEDKGV-----LTS----------------FRVSQQSRAMPCSSG 195 (198)
Q Consensus 168 A~~~e~~g~~-----~~A----------------~~ag~~~~Al~l~~~ 195 (198)
...|...+.. .+. ..+|+|.+|++...+
T Consensus 482 ~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 482 LERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp HHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555554432 111 788999999887654
No 99
>KOG2376|consensus
Probab=96.60 E-value=0.12 Score=46.40 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHh-
Q psy12373 6 LTLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERA- 74 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka- 74 (198)
+.+|++|.++-+..+- +++|- |..+++..+.+...+...+ ++.++.-.|+.+...|+|++|.+.|...
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678888866665542 23332 4447778888777776544 5667878899999999999999999887
Q ss_pred ----cCHHHHHHHHhh-----ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 75 ----EDYDNVVRVDLD-----HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 75 ----~~~~~av~l~~~-----~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
.|++.-++.-+- ..++|-+.+.++. ..+.+..+..|=.+...|+|.+|++++.+| .++|.+.-.
T Consensus 138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA------~~~~~e~l~ 210 (652)
T KOG2376|consen 138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA------LRICREKLE 210 (652)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH------HHHHHHhhc
Confidence 234433333320 0011222211111 123455566777788899999999988765 445543311
Q ss_pred hhHH--hhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 146 LHEF--GKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 146 ~~~~--~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+.. .++ .........++|=.+.-.|+..+|
T Consensus 211 ~~d~~eEei----e~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 211 DEDTNEEEI----EEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred ccccchhhH----HHHHHHHHHHHHHHHHHhcchHHH
Confidence 0000 000 011123455666677777777777
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.54 E-value=0.077 Score=38.26 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC------HHHHHH--
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED------YDNVVR-- 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~------~~~av~-- 82 (198)
+.+-.|-..|++++||..|.++-.- -+...........+|..+...|++++|+.++.++-. +..+++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3567788889999999999766210 011111245677899999999999999999987742 133444
Q ss_pred --HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 83 --VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 83 --l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
+.+-..|++++|+..+... ++.... .|.+||.+|-
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~--------la~~~~---~y~ra~~~ya 117 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEA--------LAETLP---RYRRAIRFYA 117 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHH--------HHHHHH---HHHHHHHHHH
Confidence 2333668888877664431 222222 6778888775
No 101
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.53 E-value=0.06 Score=50.00 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=78.8
Q ss_pred HccCHHHHHhhhhcc--CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH
Q psy12373 31 QLKNWTKIGQLLPHI--KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK 108 (198)
Q Consensus 31 ~~~~~~~a~~l~~~~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~ 108 (198)
+-.-++.+..+.+.- -.+..+..+|.++.+.+.+.+|..+|+--|.+..|+..+. ..+.|.++..|+.+....+ +.
T Consensus 903 ~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~-sA~mwrec~si~~q~~~~e-~~ 980 (1243)
T COG5290 903 RHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYD-SALMWRECGSISTQEKGYE-FN 980 (1243)
T ss_pred hccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhhhcchH-HH
Confidence 334444444443321 1344566678888888888888888888888888888887 7788888887776543322 11
Q ss_pred HHHHH-------------------HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhh
Q psy12373 109 RIADY-------------------CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 109 ~~A~~-------------------~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~ 152 (198)
.+|.- +.-.....+|+-+++++-++++|+.+|...+..+...+.
T Consensus 981 ~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~ 1043 (1243)
T COG5290 981 LCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHY 1043 (1243)
T ss_pred HHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHh
Confidence 22221 112345578999999999999999999877765444443
No 102
>KOG1126|consensus
Probab=96.52 E-value=0.033 Score=50.32 Aligned_cols=136 Identities=8% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHH----HHhhhh--------------------ccC--ChHHHHHHHHHHHHcCCH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTK----IGQLLP--------------------HIK--SATTFIQYAKAKEAMGSY 64 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~----a~~l~~--------------------~~~--~~~l~~~~A~~~e~~g~~ 64 (198)
-++..|.-.++.+.||+||.++-+.+. +-.|+- .++ .-..++-+|-.+-+++.+
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 356778888888888888888766443 222221 111 112333345666666777
Q ss_pred HHHHHHHHHhcCH--HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc------------
Q psy12373 65 RESVGAYERAEDY--DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS------------ 130 (198)
Q Consensus 65 ~~A~~~Y~ka~~~--~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a------------ 130 (198)
+.|.-+|.+|=++ .+. .....++..+...|+.++|+++|-+|
T Consensus 506 e~Ae~~fqkA~~INP~ns------------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNS------------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hHHHHHHHhhhcCCccch------------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 7777776666432 111 12223444444444444444444443
Q ss_pred ---------CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 ---------KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 ---------g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+++++|+...++- .++ .+ ....++.-+++.|..-|+...|
T Consensus 562 ~~~~il~~~~~~~eal~~LEeL------k~~---vP-~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEEL------KEL---VP-QESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHH------HHh---Cc-chHHHHHHHHHHHHHHccchHH
Confidence 3344444444222 221 22 3456777788888888888777
No 103
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.51 E-value=0.029 Score=35.80 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=54.2
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..|...|++++|+..+.+. .++ ...++..+..+|..+...|+++.|+++|.++ +++.- .
T Consensus 7 a~~~~~~~~~~~A~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~-~----- 66 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKA------LEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA------LELDP-D----- 66 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHH------Hhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCC-c-----
Confidence 44455567777776665433 111 1123466777888888888888888887776 33322 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
++.....++..+...|+++.|...+.++
T Consensus 67 ----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 67 ----------NAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred ----------chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1133445677777778888887776654
No 104
>KOG1524|consensus
Probab=96.47 E-value=0.041 Score=48.89 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=82.0
Q ss_pred HHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH--HHHHhhccCCHHHHHHHHHhcCCHHH
Q psy12373 29 YIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV--VRVDLDHLNDIRHAVDIVKAKKCTEG 106 (198)
Q Consensus 29 y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a--v~l~~~~~~~~~~a~~l~~~~~~~~~ 106 (198)
|.-...|+++.||++.+....+.-.+|-......+..-+...|..+++.++. |+-.. +-.++..+.+...--...
T Consensus 583 ~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK---~ltske~~mA~~~l~~G~ 659 (737)
T KOG1524|consen 583 YLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIK---ALTSKEEQMAENSLMLGR 659 (737)
T ss_pred HhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHh---ccCcHHHHHHHHHHHhcc
Confidence 4566889999999999988888888899899999999999999999988765 33222 222333333332100000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL 146 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~ 146 (198)
+...--.++..|-..+|+.+-++.-+|..|++|+.+++..
T Consensus 660 ~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~ 699 (737)
T KOG1524|consen 660 MLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKEL 699 (737)
T ss_pred chhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHH
Confidence 1111113567788899999999999999999999998743
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.45 E-value=0.1 Score=39.50 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
....+..+|..+...|++++|+.+|.++ +.+.. . .++ .......+|..+...|++++|+.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~-~--~~~----------~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEA------LKLEE-D--PND----------RSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHhh-c--cch----------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456778899999999999999999987 54433 1 111 112344677777888888888777
Q ss_pred HHH
Q psy12373 127 LIL 129 (198)
Q Consensus 127 y~~ 129 (198)
|.+
T Consensus 95 ~~~ 97 (172)
T PRK02603 95 YHQ 97 (172)
T ss_pred HHH
Confidence 654
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.45 E-value=0.051 Score=38.98 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+......+|..+...|++++|.++|.++ +.+.- .++.....+|..+...|++++|+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~p----------------~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLL------AAYDP----------------YNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH------HHhCC----------------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999888664 22211 1233444566666666666666655
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. + .+.+++.+..+|..+...|++.+|
T Consensus 74 ~~~~~~----------------------~-~p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 74 YALAAA----------------------L-DPDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHHHh----------------------c-CCCChHHHHHHHHHHHHcCCHHHH
Confidence 543321 1 244678888888888888888888
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.42 E-value=0.007 Score=38.45 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHh
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG-SYRESVGAYERA 74 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka 74 (198)
..-+..|...|++++|+..|.++ .++ ..+++.++..+|..+...| ++++|++.|.++
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~a------i~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKA------IEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHH------HHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34566677778888888888655 332 2346789999999999999 799999999987
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.42 E-value=0.1 Score=39.26 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhcc-CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHI-KSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~-~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..+...|+++.|+..|.++- .+.... ....++..+|..+...|++++|+++|.++
T Consensus 43 ~~~~~~g~~~~A~~~~~~al------~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAM------RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445566666666554431 111111 12346778888899999999999888777
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.31 E-value=0.016 Score=36.30 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+|..+...|++++|+++|.++ + +..| ++.....+|..+...|++++|+.+|.++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~------l-----------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQA------L-----------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHH------H-----------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHH------H-----------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666666666666665 1 1123 2445667899999999999999888765
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.30 E-value=0.064 Score=49.82 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--H-----HHHHHHHhhccCCHHHHHHHHH----hcCC-HHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED--Y-----DNVVRVDLDHLNDIRHAVDIVK----AKKC-TEGAKRIADYC 114 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~-----~~av~l~~~~~~~~~~a~~l~~----~~~~-~~~~~~~A~~~ 114 (198)
.......+|..+...+.+++|...+.++=+ + ....-+++..+|+.++|..+-+ .+++ +.....+|..+
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l 198 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL 198 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 445555666666666666666666666542 1 1222222235666666654332 3443 45566889999
Q ss_pred HhcCCHHHHHHHHHHc
Q psy12373 115 NKHGDFGAAIHFLILS 130 (198)
Q Consensus 115 ~~~g~~~~Av~~y~~a 130 (198)
.+.|+.++|+..|.++
T Consensus 199 ~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 199 TRRGALWRARDVLQAG 214 (694)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999999998
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.30 E-value=0.068 Score=47.99 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCH
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDF 120 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~ 120 (198)
+-+|+++...|++++|.++..+|=+. --=.+++. +.|++++|.+.+.. ....+....
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiN----------- 265 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYIN----------- 265 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHH-----------
Confidence 44699999999999999988877532 12234555 78888887765543 222222221
Q ss_pred HHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhhhh
Q psy12373 121 GAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPCSS 194 (198)
Q Consensus 121 ~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l~~ 194 (198)
.++++++.++|+.++|..++...-.. +.+....+.-+...||+-+- .+| .+.|++..|++.+.
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~---------~~~~~~~L~~mQc~Wf~~e~--a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTRE---------DVDPLSNLNDMQCMWFETEC--AEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCC---------CCCcccCHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence 35677777777777777776433211 11223344444555654322 344 66677777766553
No 112
>KOG0547|consensus
Probab=96.30 E-value=0.046 Score=48.17 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------------HHHHHHhhccCCHHHHHHHHHhc----CCHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------------NVVRVDLDHLNDIRHAVDIVKAK----KCTEGA 107 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------------~av~l~~~~~~~~~~a~~l~~~~----~~~~~~ 107 (198)
.++.+.-.|+.+-++++|+.|++.|-+|-+.+ +|+-+.. -.++++.|.+++++. |..+.+
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHH
Confidence 67788889999999999999999999986542 2222222 246778888888753 222333
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 108 K-RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 108 ~-~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+ -+|+.....|+.++||++|.++-.
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 589999999999999999876543
No 113
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.29 E-value=0.042 Score=46.31 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=75.9
Q ss_pred HHHHHHHHHHccCHHHHHhhhhc--cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc----CHHHHHHHHhhccCCHHHHH
Q psy12373 22 YEKAATCYIQLKNWTKIGQLLPH--IKSATTFIQYAKAKEAMGSYRESVGAYERAE----DYDNVVRVDLDHLNDIRHAV 95 (198)
Q Consensus 22 ~~~Ai~~y~~~~~~~~a~~l~~~--~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----~~~~av~l~~~~~~~~~~a~ 95 (198)
...-|.-.+..|+...|.++... ++++.....-=+.+...|+|++=.++- +.. -|+--|+.|+ ..|+.++|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa-~skKsPIGyepFv~~~~-~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFA-KSKKSPIGYEPFVEACL-KYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHH-hCCCCCCChHHHHHHHH-HCCCHHHHH
Confidence 34456666677777777777764 444444433356677788887765543 323 2567788888 667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcc
Q psy12373 96 DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 96 ~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~ 144 (198)
.++.+.++.+ -..+|.+.|++.+|++.=.+.++.+.=..|....+
T Consensus 258 ~yI~k~~~~~----rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 258 KYIPKIPDEE----RVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HHHHhCChHH----HHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 7777654422 23456777888888888888887766666655543
No 114
>KOG2002|consensus
Probab=96.27 E-value=0.23 Score=47.10 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=100.4
Q ss_pred HHHHHccCHHHHHhhhhcc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---------HHHHHHHHhhccC
Q psy12373 27 TCYIQLKNWTKIGQLLPHI-----K---SATTFIQYAKAKEAMGSYRESVGAYERAED---------YDNVVRVDLDHLN 89 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~-----~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---------~~~av~l~~~~~~ 89 (198)
..|..-+++..+..++.+. . -..-++|+|+.+-.+|+|+.|-.+|..+-. +....+|++ +.|
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~ 356 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRG 356 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-Hhc
Confidence 3455567777776666431 1 234478999999999999999999988752 256788999 889
Q ss_pred CHHHHH----HHHHhcCC-HHHHHHHHHHHHhcC----CHHHHHHHHHHcCChH-----HHHHHH---HHcch---hhHH
Q psy12373 90 DIRHAV----DIVKAKKC-TEGAKRIADYCNKHG----DFGAAIHFLILSKCYQ-----DAFNLS---QQHKK---LHEF 149 (198)
Q Consensus 90 ~~~~a~----~l~~~~~~-~~~~~~~A~~~~~~g----~~~~Av~~y~~ag~~~-----~A~~la---~~~~~---~~~~ 149 (198)
+.+.+. ++.+..|+ ++.+..+|.-|...+ ..+.|..+..++-... .-+.++ .+.+. ++.+
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~ 436 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAY 436 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHH
Confidence 999875 34455554 556666676666553 3456666665554433 223333 22221 2333
Q ss_pred hhhhh----hcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 150 GKFLL----EEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 150 ~~~~~----l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..++. .....+|++++.+|......|+++.|
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 33331 23457899999999988899999998
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.25 E-value=0.028 Score=41.46 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC--HHH-----HHHHHhhccCCHHHHHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED--YDN-----VVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~~-----av~l~~~~~~~~~~a~~l 97 (198)
....+|+.+...|++++|+..+....+ +.. -=+++. ..|++++|...
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~ 140 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL-AQGDYDEARAA 140 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 344677777888888888877765432 211 123444 56777776543
No 116
>KOG0495|consensus
Probab=96.24 E-value=0.19 Score=46.08 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHc-------cCHHHHHhhhhc----cC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQL-------KNWTKIGQLLPH----IK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~-------~~~~~a~~l~~~----~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+.++.|-.+|.++--...-.++|.++ ++.+.+.+++.. .+ =+.++..+|+.+|.+++.+.|.+.|..+
T Consensus 632 ~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 56777777777665444444444443 455567777752 22 4578889999999999999999999987
Q ss_pred cC--------HHHHHHHHhhccCCHHHHHHHHHh--cCCHHH-HHHHHH--HHHhcCCHHHHHHHHHHcCC--------h
Q psy12373 75 ED--------YDNVVRVDLDHLNDIRHAVDIVKA--KKCTEG-AKRIAD--YCNKHGDFGAAIHFLILSKC--------Y 133 (198)
Q Consensus 75 ~~--------~~~av~l~~~~~~~~~~a~~l~~~--~~~~~~-~~~~A~--~~~~~g~~~~Av~~y~~ag~--------~ 133 (198)
-. |....++=- ..|++-+|-.|... ..+|.. ...++. .=.+.|..+.|-.+..+|=+ |
T Consensus 712 ~k~cP~~ipLWllLakleE-k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 712 TKKCPNSIPLWLLLAKLEE-KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred cccCCCCchHHHHHHHHHH-HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 42 233333332 34555555555432 122322 222222 22244555555555544432 6
Q ss_pred HHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 134 QDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 134 ~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+||.|....+.--...++ |. -+.+|-+++-+|..|=.+.++++|
T Consensus 791 aEaI~le~~~~rkTks~DA--Lkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDA--LKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHhccCcccchHHHHH--HHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 6666666555432222333 33 367899999999988888888887
No 117
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.28 Score=41.38 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc---cC-------ChHHHHHHHHHHHHcCCHHHHH
Q psy12373 7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH---IK-------SATTFIQYAKAKEAMGSYRESV 68 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~---~~-------~~~l~~~~A~~~e~~g~~~~A~ 68 (198)
|.++.|+++|..--+ ....+.+|..-++|.+|+..+.+ ++ -...+..+|.......+.+.|.
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 677777777776555 33456677777888887666652 22 2345556677777777777777
Q ss_pred HHHHHhcCH-HHHHH-------HHhhccCCHHHHHHHHH----hcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 69 GAYERAEDY-DNVVR-------VDLDHLNDIRHAVDIVK----AKKC--TEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 69 ~~Y~ka~~~-~~av~-------l~~~~~~~~~~a~~l~~----~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
....||-.- .+-|| +.. ..|+.++|++.-+ +.+. +.+...+...|...|+..+...+.+++..
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777776422 11222 233 3456666654332 2222 22333455566677777777777766654
No 118
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.00 E-value=0.35 Score=45.16 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHH--------HHcCCHHHHHHHHHHhcCHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAK--------EAMGSYRESVGAYERAEDYD 78 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~--------e~~g~~~~A~~~Y~ka~~~~ 78 (198)
..+-+|+..|+-.|.+..|+..|..+++|.....+........ ...+|.-+ ...|+-..+...|. .++.
T Consensus 936 ~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl--~N~~ 1012 (1243)
T COG5290 936 LYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYL--ENLY 1012 (1243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHH--hCHH
Confidence 4677999999999999999999999999999887765433222 33333322 23555555555554 4677
Q ss_pred HHHHHHhhccCCHHHHHHHHHhcCCHHHHHH--HHHHHHhc-CCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR--IADYCNKH-GDFGAAIHFLILSKCYQDAFNLSQQHKKL 146 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~--~A~~~~~~-g~~~~Av~~y~~ag~~~~A~~la~~~~~~ 146 (198)
.||-++| +..+.++|+.++..++..+.... .+...+.= |..+-+...|.+.+.-.++++++...+..
T Consensus 1013 eava~~c-kgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~e 1082 (1243)
T COG5290 1013 EAVAMDC-KGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKCE 1082 (1243)
T ss_pred HHHHHHc-ccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 8888888 77889999988887766555442 23333443 44678899999999999999999777654
No 119
>KOG0553|consensus
Probab=95.99 E-value=0.044 Score=45.34 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCH--HHHH------HHHhhccCCHHHHHHHHHhcC----C-HHHHHHHHHHHHhc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDY--DNVV------RVDLDHLNDIRHAVDIVKAKK----C-TEGAKRIADYCNKH 117 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~av------~l~~~~~~~~~~a~~l~~~~~----~-~~~~~~~A~~~~~~ 117 (198)
+..-|.-+...++|.+|+..|.+|=.+ .+|| ..|. .+|+.+.|++=|+..- . ......++..|...
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 334577888999999999999998643 2333 2345 6899999998887532 1 22344678889999
Q ss_pred CCHHHHHHHHHHcCC-------hHHHHHHHHHc
Q psy12373 118 GDFGAAIHFLILSKC-------YQDAFNLSQQH 143 (198)
Q Consensus 118 g~~~~Av~~y~~ag~-------~~~A~~la~~~ 143 (198)
|++++|++.|.||=. |.+.+++|.+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999976 45566666544
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.99 E-value=0.21 Score=47.58 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+.+|.+.|+.++|..+|.+.-.++ .+++.++..+|-.+... +.+.|+++|.+| |..++ ..+++.
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------V~~~i-~~kq~~ 186 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKA------IYRFI-KKKQYV 186 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH------HHHHH-hhhcch
Confidence 344444455555555544332222 45889999999999999 999999999998 99999 556777
Q ss_pred HHHHH----HHhcCC-HHHHHHHHHHHHhcCCH-------HHHHHHHHHcCChHHHHHHHH
Q psy12373 93 HAVDI----VKAKKC-TEGAKRIADYCNKHGDF-------GAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 93 ~a~~l----~~~~~~-~~~~~~~A~~~~~~g~~-------~~Av~~y~~ag~~~~A~~la~ 141 (198)
++..+ +...++ .+.+..+=+...+.-.+ .--.+.|...++|++++.+.+
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 66553 332222 23333333332222112 234467778888888877764
No 121
>KOG1129|consensus
Probab=95.95 E-value=0.55 Score=39.84 Aligned_cols=174 Identities=12% Similarity=0.082 Sum_probs=103.0
Q ss_pred cchHHHHHHHHHHcCC-------HHHHHHHHHHccCHHHHHhhhh----ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGN-------YEKAATCYIQLKNWTKIGQLLP----HIK-SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~-------~~~Ai~~y~~~~~~~~a~~l~~----~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+|++++|.+.+..+=. +-..-+.|.+..+...|..++. ..+ +..++.-.|+.+|.++++++|.++|..
T Consensus 236 Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 4667777776665522 2233445555666666544443 222 777888899999999999999999998
Q ss_pred hcCHH----HHHHH----HhhccCCHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC----ChHHH
Q psy12373 74 AEDYD----NVVRV----DLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK----CYQDA 136 (198)
Q Consensus 74 a~~~~----~av~l----~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag----~~~~A 136 (198)
.-+.. .+|-+ +. ..|+++-|++.=|. ..+++.+..++--|.--+++|-++-.|.+|- +.++|
T Consensus 316 vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 75432 11111 22 35788888776553 3568888888887777777776666665543 23444
Q ss_pred HHHHHH-------cchhhHHhhhhhh---cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 137 FNLSQQ-------HKKLHEFGKFLLE---EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 137 ~~la~~-------~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+=-. -|.+.......+| ++....+.+.++|..-...|+.++|
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 333211 1222111111111 2233456677777776677777666
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.95 E-value=0.15 Score=35.27 Aligned_cols=69 Identities=3% Similarity=0.056 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHHcC--C---------HHHHHHHHHHccCHHHHHhhhhcc----C----ChHHHHHHHHHHHHcCCHHH
Q psy12373 6 LTLDRGKWTLYESAG--N---------YEKAATCYIQLKNWTKIGQLLPHI----K----SATTFIQYAKAKEAMGSYRE 66 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g--~---------~~~Ai~~y~~~~~~~~a~~l~~~~----~----~~~l~~~~A~~~e~~g~~~~ 66 (198)
.|++++|.++|.+.= . .-....+|...++++.|..++..+ + .+..+..+|..+...|++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 467888888887651 1 122567778888888887777532 1 24567788889999999999
Q ss_pred HHHHHHHh
Q psy12373 67 SVGAYERA 74 (198)
Q Consensus 67 A~~~Y~ka 74 (198)
|+++|.++
T Consensus 95 A~~~~~~~ 102 (119)
T TIGR02795 95 AKATLQQV 102 (119)
T ss_pred HHHHHHHH
Confidence 99888776
No 123
>KOG2076|consensus
Probab=95.95 E-value=0.062 Score=50.23 Aligned_cols=107 Identities=12% Similarity=0.257 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--------
Q psy12373 62 GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC-------- 132 (198)
Q Consensus 62 g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~-------- 132 (198)
+.+.+|-..|.+ |+++.|.+|+.| +.++.| .+.....+|..|+..||.+++..+...|-+
T Consensus 141 ~ll~eAN~lfar-g~~eeA~~i~~E----------vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 141 QLLGEANNLFAR-GDLEEAEEILME----------VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHH----------HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 346677777777 777777777773 444434 355667899999999999999988877654
Q ss_pred hHHHHHHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 133 YQDAFNLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 133 ~~~A~~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|..--.+..+.++.+. +.+++.+ .+..-+....-+..|++.|+...|
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHH
Confidence 3333333344443321 1222111 233455666666677777766666
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.92 E-value=0.21 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
.++..+-..|+.++|+.++.++-
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc
Confidence 44444444455555555555544
No 125
>KOG1125|consensus
Probab=95.89 E-value=0.015 Score=51.74 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a 94 (198)
+|--.|++++||+||..+ |-.+..|-.+..++|-.+.+.....+||..|.+| +.+.= |-
T Consensus 439 Ly~ls~efdraiDcf~~A--------L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA------LqLqP---~y---- 497 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAA--------LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA------LQLQP---GY---- 497 (579)
T ss_pred HHhcchHHHHHHHHHHHH--------HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH------HhcCC---Ce----
Confidence 455556666666666432 1123447778888888888888888999888887 43321 00
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 95 VDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..+-+.+|--|...|.|++|+++|..|
T Consensus 498 ---------VR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 498 ---------VRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred ---------eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 112345677778888888888887654
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.88 E-value=0.09 Score=33.42 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+..+|..+...|++++|+..|.++ +++.- .++.....+|..+...|++++|++.|.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKA------LELDP----------------DNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHH------HhcCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777776655 32221 11133445666666666666666655443
Q ss_pred CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
-. +. +..+..+..++..+...|++++|
T Consensus 61 ~~----------------------~~-~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 61 LE----------------------LD-PDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred Hh----------------------CC-CcchhHHHHHHHHHHHHHhHHHH
Confidence 21 11 22446777788888777877776
No 127
>KOG2076|consensus
Probab=95.87 E-value=0.32 Score=45.70 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+++.+|-.+|.+ |+.+.|.++. .++++..+ .+..+..+|..+|..|+.+.+..+...|
T Consensus 141 ~ll~eAN~lfar-g~~eeA~~i~---------~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 141 QLLGEANNLFAR-GDLEEAEEIL---------MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHH---------HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 566677777777 7777777766 34444333 6678889999999999999999888776
No 128
>KOG2247|consensus
Probab=95.87 E-value=0.00064 Score=59.40 Aligned_cols=167 Identities=9% Similarity=-0.076 Sum_probs=114.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDY----- 77 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----- 77 (198)
+-.|++|.+.+.....+-+|+.|--+. +|+.+.-++.+.+ -+.+-...++.+|..|++..+.-.|++.+..
T Consensus 58 v~~YD~agq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~ 136 (615)
T KOG2247|consen 58 VIYYDKAGQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN 136 (615)
T ss_pred HHhhhhhcceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccc
Confidence 357899999999999999999999988 9999988887755 6777888999999999999999999997632
Q ss_pred -HHHHHHHhh-------ccC-CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373 78 -DNVVRVDLD-------HLN-DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 148 (198)
Q Consensus 78 -~~av~l~~~-------~~~-~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~ 148 (198)
..-+++|-- .+| +...-..++.+..+......+++.+...++..+++.+|...|.++++--.+-.-+++.-
T Consensus 137 ~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~k 216 (615)
T KOG2247|consen 137 NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGK 216 (615)
T ss_pred cccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeecccc
Confidence 111222210 112 22222222222222223345677788888888888888888888888666555544422
Q ss_pred HhhhhhhcCCCCHHHHHHHHHHHHhCC
Q psy12373 149 FGKFLLEEDEPNPVELKRLAIHFEEDK 175 (198)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~e~~g 175 (198)
..++ +..-.+++.++..|.+-|..+
T Consensus 217 age~--m~sVvsgKkhl~yak~nE~D~ 241 (615)
T KOG2247|consen 217 AGET--MVSVVSGKKHLMYAKYNELDE 241 (615)
T ss_pred ccce--eeeeeecHHHHHHHhhcCCCC
Confidence 2333 344556788888888766655
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.86 E-value=1 Score=38.73 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhcc----CChHHHHHH--HHHHHHcCCHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHI----KSATTFIQY--AKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~~----~~~~l~~~~--A~~~e~~g~~~~A~~~Y~ 72 (198)
|.|..|+++..++.+ +-.|++.--..|+++++-+.+.++ +++++...+ ++.+-..|++..|.+--.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 556666666665432 334555555667777765555432 355655544 778889999988877655
Q ss_pred HhcCH--------HHHHHHHhhccCCHHHHHHHHHhc------CCHHH--HHHHH------------------HHHHhc-
Q psy12373 73 RAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK------KCTEG--AKRIA------------------DYCNKH- 117 (198)
Q Consensus 73 ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~------~~~~~--~~~~A------------------~~~~~~- 117 (198)
+.-.. .-++++|+ +.|+|+.+..+..+. .+++. ..+.| +|+...
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~-~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYI-RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHH-HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 55432 45567777 788999887776432 12221 11111 233221
Q ss_pred ----CCH---HHHHHHHHHcCChHHHHHHHHHcch--hh-HHhhhh-h----------------hc-CCCCHHHHHHHHH
Q psy12373 118 ----GDF---GAAIHFLILSKCYQDAFNLSQQHKK--LH-EFGKFL-L----------------EE-DEPNPVELKRLAI 169 (198)
Q Consensus 118 ----g~~---~~Av~~y~~ag~~~~A~~la~~~~~--~~-~~~~~~-~----------------l~-~~~~~~~~~~~A~ 169 (198)
.++ -..++-|+..|.+++|.++.+++=+ +| .+...+ . +. -+.+|.++..+++
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~ 336 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR 336 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 111 3577889999999999888765521 11 111111 0 12 3567889999999
Q ss_pred HHHhCCChhhH
Q psy12373 170 HFEEDKGVLTS 180 (198)
Q Consensus 170 ~~e~~g~~~~A 180 (198)
.+..++.|.+|
T Consensus 337 L~~k~~~w~kA 347 (400)
T COG3071 337 LALKNKLWGKA 347 (400)
T ss_pred HHHHhhHHHHH
Confidence 99999999888
No 130
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.84 E-value=0.52 Score=39.43 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhcC-----CHHH----HHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAKK-----CTEG----AKRIA 111 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~~-----~~~~----~~~~A 111 (198)
.....+|..+...|++++|++.|.++-.. .....++. ..|++++|.....+.- ++.. ...+|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 34556788999999999999999997532 23345566 6899999998876421 1221 22578
Q ss_pred HHHHhcCCHHHHHHHHHHcC
Q psy12373 112 DYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 112 ~~~~~~g~~~~Av~~y~~ag 131 (198)
..+...|++++|+..|.++.
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999875
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.83 E-value=1.2 Score=42.34 Aligned_cols=69 Identities=4% Similarity=-0.056 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHcC--CHHH--H----HHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG--NYEK--A----ATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g--~~~~--A----i~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++..|...|.++= ++.. + +.++...|+++.|...+.+.- ....+.-+|..+...|+++.|+++|.+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555655555542 2221 1 455566666666666665432 123333447777888888888888877
Q ss_pred hc
Q psy12373 74 AE 75 (198)
Q Consensus 74 a~ 75 (198)
+-
T Consensus 128 aL 129 (822)
T PRK14574 128 SL 129 (822)
T ss_pred HH
Confidence 63
No 132
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.21 Score=40.82 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 86 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~ 86 (198)
.|+.|-.+|.. |++..|..-|..- .+-.. ..-.++.++|+|+.+-.+|+|++|+..|.++ ++=+-
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~f------i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~------~k~~P- 209 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAF------IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV------VKDYP- 209 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHH------HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH------HHhCC-
Confidence 35555555443 5566666665321 11111 1227899999999999999999999999887 43222
Q ss_pred ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 87 HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 87 ~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
. .-..|+.+..+|.-+...|+.++|-..|..
T Consensus 210 ~------------s~KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 210 K------------SPKAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred C------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 012356677778877777877777665543
No 133
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.82 E-value=0.81 Score=42.05 Aligned_cols=95 Identities=20% Similarity=0.132 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC---CHHHHHHHHHHH----HhcCCHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK---CTEGAKRIADYC----NKHGDFGA 122 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~---~~~~~~~~A~~~----~~~g~~~~ 122 (198)
....-|=.+-+...|..|+-+|.-||+..+||++|++++++++=|+-|+|-.. .|.....+-++. .+.||.=-
T Consensus 454 AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~~~~d~wl 533 (631)
T PF12234_consen 454 AALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAIKEGDRWL 533 (631)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccccccCCHHH
Confidence 33344557788999999999999999999999999999999999999998432 122211222222 24566555
Q ss_pred HHHHHHHcCChHHHHHHHHHcc
Q psy12373 123 AIHFLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 123 Av~~y~~ag~~~~A~~la~~~~ 144 (198)
+--.|-.-|++++|++......
T Consensus 534 ~s~~~W~L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 534 ASWAFWMLGDYDEAIRALISPP 555 (631)
T ss_pred HHHHHHhcCCHHHHHHHHhcCc
Confidence 5667888899999988876554
No 134
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.81 E-value=0.25 Score=41.00 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
+..+...|..+...|++++|+..|.++-
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al 91 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQAL 91 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567788999999999999999888873
No 135
>KOG1128|consensus
Probab=95.80 E-value=0.16 Score=46.78 Aligned_cols=123 Identities=9% Similarity=0.050 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--HHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--DNV 80 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~a 80 (198)
|...+|...|++-+.++.-|.||+.+|+-.+|..+... -+++-++.-+|...-+.--|+.|.+++-.-..- ..-
T Consensus 412 GitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~ 491 (777)
T KOG1128|consen 412 GITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSL 491 (777)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhh
Confidence 67788888899999999999999999988887766642 346677777788777777777777765443211 111
Q ss_pred HHHHhhccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 81 VRVDLDHLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
-+..+ ..++++++.+.-+.+- ..+.-+.++-...+.+++..|++.|+++
T Consensus 492 ~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 492 ALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred ccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 11123 3467777766654321 1111222222334667788888888775
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.74 E-value=0.84 Score=36.86 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------H
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY-------D 78 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~ 78 (198)
..|.+|.+.+. .|++++|++.|.+... .....+ ......++|..+-..+++++|+..|.+.=.. .
T Consensus 34 ~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~------~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 34 EIYATAQQKLQ-DGNWKQAITQLEALDN------RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 34566666655 6888888888755422 211111 2334578999999999999999998776311 1
Q ss_pred HHH--HHHh-hcc---------------CCHH-------HHHHHHHhcCCHHHHHH----HHHHHHhcCC-HHHHHHHHH
Q psy12373 79 NVV--RVDL-DHL---------------NDIR-------HAVDIVKAKKCTEGAKR----IADYCNKHGD-FGAAIHFLI 128 (198)
Q Consensus 79 ~av--~l~~-~~~---------------~~~~-------~a~~l~~~~~~~~~~~~----~A~~~~~~g~-~~~Av~~y~ 128 (198)
.|. ...+ ..+ .+.. ...++++..|++.-... +...-..... --....+|.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0000 000 0111 12245556665332111 1100001111 114567777
Q ss_pred HcCChHHHHHHHHHcchhhHHhhhhh-h-cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 129 LSKCYQDAFNLSQQHKKLHEFGKFLL-E-EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 129 ~ag~~~~A~~la~~~~~~~~~~~~~~-l-~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+-|.|.-|+.=+ ..++. = ..+..++.+..+...|...|..++|
T Consensus 187 ~~~~y~AA~~r~---------~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 187 KRGAYVAVVNRV---------EQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HcCchHHHHHHH---------HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 778877765444 22210 1 2355688888888999888888777
No 137
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.72 E-value=0.022 Score=31.70 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..+|+.+...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567899999999999999999996
No 138
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=95.69 E-value=0.26 Score=40.84 Aligned_cols=165 Identities=13% Similarity=0.028 Sum_probs=92.5
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC----CH----HH--HHHHHHHhcCHHHHHHHH
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG----SY----RE--SVGAYERAEDYDNVVRVD 84 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g----~~----~~--A~~~Y~ka~~~~~av~l~ 84 (198)
-+...|+.++|+++-.+.+.|..|.-|....+ ++++.+..+.|-... +. .. ..=+-.-+|+...+|.-+
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g-~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~l 82 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSLG-PELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDEL 82 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhcC-HHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHHh
Confidence 36678999999999999999999988876654 555555544333332 22 11 111224467787777665
Q ss_pred hhc-----------cCCHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCHHHHHHHHHHcCChHHH----------HHHH
Q psy12373 85 LDH-----------LNDIRHAVDIVKAKKCTE---GAKRIADYCNKHGDFGAAIHFLILSKCYQDA----------FNLS 140 (198)
Q Consensus 85 ~~~-----------~~~~~~a~~l~~~~~~~~---~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A----------~~la 140 (198)
+.. .++|.+...++-....++ ....++..+...|+...|--.|+-+|....- +.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~~~~~~~~~~ll 162 (284)
T PF12931_consen 83 VPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPWLDDSNSRFSLL 162 (284)
T ss_dssp HH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBSSTTS--B--SS
T ss_pred ccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcccccccchhhhhc
Confidence 522 458999877775544332 3456899999999999999999999852211 0000
Q ss_pred H--Hcc------hhhHHhhhhhh-------cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 141 Q--QHK------KLHEFGKFLLE-------EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 141 ~--~~~------~~~~~~~~~~l-------~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
- ... ..++++-+..+ ..+......+..|..+.+.|....|
T Consensus 163 g~~~~~~~~~~~~tEiyEya~~l~~~~~~~~~~~l~~~Kl~yA~~Lae~G~~~~A 217 (284)
T PF12931_consen 163 GASSFASPEAIILTEIYEYALSLSSNNPQFGLPHLQPYKLQYASLLAEQGLLSEA 217 (284)
T ss_dssp S---TTSHHHHHHHHHHHHHHHT---STT---CCCHHHHHHHHHHHHHTT-HHHH
T ss_pred cCCccccHHHHHHHHHHHHHHHhhccCCCcCcHHHHHHHHHHHHHHHhCCCHHHH
Confidence 0 000 01111111123 1133456677899999999988877
No 139
>KOG0686|consensus
Probab=95.54 E-value=0.4 Score=41.47 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-CCHHHHH-------
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-KCTEGAK------- 108 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-~~~~~~~------- 108 (198)
+..+..+|.++..-|+++.|+++|.|+.|| .+.|++.+ .+|+|-+......+. ..++...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI-~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI-YMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-hhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 567889999999999999999999997776 45566666 678888876655321 1111111
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 109 -----RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 109 -----~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
..+......+++.+|+..|..+.-
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 112222234588888888887753
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.52 E-value=0.43 Score=41.44 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcC
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHG 118 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g 118 (198)
-|..-+-+++...+.++.|+++|++... .--.+++++ ..++-.+|+++..+. | +......-|++|.++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k- 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK- 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-
Confidence 3444567788889999999999998653 233466666 567777788776542 2 222233334444444
Q ss_pred CHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 119 DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 119 ~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
++++.|+.+|++. .. + .+.+-+....+|+.|...|+|+.|
T Consensus 248 ------------~~~~lAL~iAk~a------v~---l-sP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 248 ------------KKYELALEIAKKA------VE---L-SPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred ------------CCHHHHHHHHHHH------HH---h-CchhHHHHHHHHHHHHhcCCHHHH
Confidence 4456666666444 11 1 244567788899999999999999
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.41 E-value=0.19 Score=42.90 Aligned_cols=85 Identities=16% Similarity=0.032 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+...|......|+|++|+++|.++ |++.- .++.....+|..+...|++++|+..+.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~A------l~~~P----------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQA------IDLDP----------------NNAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445577777888888888888777 43322 12233345566666666666555554332
Q ss_pred CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
=. +. +..+..++.+|..|...|+|.+|
T Consensus 63 l~----------------------l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 63 IE----------------------LD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HH----------------------hC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 11 11 23455666666666666666666
No 142
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.36 E-value=0.063 Score=33.74 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+.|+++.|+++|.+. +. ..++..+...+|..+...|++++|.+.+.+.
T Consensus 3 ~~~~~~~A~~~~~~~---------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKA---------LQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHH---------HHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666433 22 2347788888899999999999988888776
No 143
>KOG1173|consensus
Probab=95.34 E-value=0.43 Score=42.83 Aligned_cols=130 Identities=9% Similarity=0.106 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------HHHHHHHhhccCCHH
Q psy12373 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY-------DNVVRVDLDHLNDIR 92 (198)
Q Consensus 20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av~l~~~~~~~~~ 92 (198)
|+.|.|+.+|.. |.+++.....|.++ +|-.+...++++-|.++|..|-.+ .+=+-+..=+.+.|.
T Consensus 360 ~EhdQAmaaY~t------Aarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 360 GEHDQAMAAYFT------AARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred chHHHHHHHHHH------HHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence 555666666544 36666665555544 777888888899999988887432 000111110234566
Q ss_pred HHHHHHHhcC------CHH------HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCC
Q psy12373 93 HAVDIVKAKK------CTE------GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPN 160 (198)
Q Consensus 93 ~a~~l~~~~~------~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~ 160 (198)
+|..+-+..- .++ ....+|..+.+.+.+++||.+|.++=. + .+.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~----------------------l-~~k~ 488 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL----------------------L-SPKD 488 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----------------------c-CCCc
Confidence 6554433210 111 122345555555555555555443311 1 2456
Q ss_pred HHHHHHHHHHHHhCCChhhH
Q psy12373 161 PVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 161 ~~~~~~~A~~~e~~g~~~~A 180 (198)
++++..+|=.+--.|+++.|
T Consensus 489 ~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hhHHHHHHHHHHHhcChHHH
Confidence 77777777777777887777
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.32 E-value=1.4 Score=36.84 Aligned_cols=163 Identities=13% Similarity=0.001 Sum_probs=87.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--HHH--HHH---H
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAED--YDN--VVR---V 83 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~~--av~---l 83 (198)
.+.+|...|+++.++..|.+. .+... ..+..+.....|...-..|++++|.+++.++-+ +.. ++. .
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAA------AQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHH------HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 346666677777775544332 22222 233445555667788889999999998887542 222 221 1
Q ss_pred Hh---hccCCHHHHHHHHHh----cCCH-HHHHHHHHHHHhcCCHHHHHHHHHHcCCh--------HHHHHHHHHcchhh
Q psy12373 84 DL---DHLNDIRHAVDIVKA----KKCT-EGAKRIADYCNKHGDFGAAIHFLILSKCY--------QDAFNLSQQHKKLH 147 (198)
Q Consensus 84 ~~---~~~~~~~~a~~l~~~----~~~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~--------~~A~~la~~~~~~~ 147 (198)
+. ...+..+.+.+.... ++.. .....+|..+...|++++|+..+.++-.. ..--.+..+.|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 11 123444444444321 1211 12335677888899999888777765331 11122233444443
Q ss_pred HHhhhh----hhcCCC-C--HHHHHHHHHHHHhCCChhhH
Q psy12373 148 EFGKFL----LEEDEP-N--PVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 148 ~~~~~~----~l~~~~-~--~~~~~~~A~~~e~~g~~~~A 180 (198)
.....+ .+.+.. . ...+..+|..+...|++++|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 322222 112211 1 12345788999999999888
No 145
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.31 E-value=0.83 Score=35.63 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh---------HHHHHHHHHcch--hhHHhhhhh--hc-CCCCHHHHHHHH
Q psy12373 103 CTEGAKRIADYCNKHGDFGAAIHFLILSKCY---------QDAFNLSQQHKK--LHEFGKFLL--EE-DEPNPVELKRLA 168 (198)
Q Consensus 103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~---------~~A~~la~~~~~--~~~~~~~~~--l~-~~~~~~~~~~~A 168 (198)
+.+.-..+|+.+...|++++|+..|.++-.. .-|.-+....|. .+....+++ +. .+..+..+..+|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 3555667899999999999999999888762 222223333333 232233321 33 456789999999
Q ss_pred HHHHhCCChhhH
Q psy12373 169 IHFEEDKGVLTS 180 (198)
Q Consensus 169 ~~~e~~g~~~~A 180 (198)
..+...|+|++|
T Consensus 152 ~~~~~~g~~~~A 163 (198)
T PRK10370 152 SDAFMQADYAQA 163 (198)
T ss_pred HHHHHcCCHHHH
Confidence 999999999998
No 146
>KOG1173|consensus
Probab=95.27 E-value=0.14 Score=45.87 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
-.++...+|..+...+.+++||.+|.++ +.+.- ++|+ ....+|-.+.-.|.++.||++
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~a------L~l~~---k~~~-------------~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKA------LLLSP---KDAS-------------THASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHH------HHcCC---Cchh-------------HHHHHHHHHHHhcChHHHHHH
Confidence 3456788999999999999999999998 65554 2333 334566667788999999999
Q ss_pred HHHcC
Q psy12373 127 LILSK 131 (198)
Q Consensus 127 y~~ag 131 (198)
|++|=
T Consensus 512 fhKaL 516 (611)
T KOG1173|consen 512 FHKAL 516 (611)
T ss_pred HHHHH
Confidence 99874
No 147
>KOG0543|consensus
Probab=95.27 E-value=0.15 Score=43.84 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------------------HHHHHHHhhccCCHHHHHHHHHh-----
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-----------------------DNVVRVDLDHLNDIRHAVDIVKA----- 100 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------------------~~av~l~~~~~~~~~~a~~l~~~----- 100 (198)
......|+.+-..|.|..|+..|.++-.+ .+..-+++ .++.|..|+..|.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcC
Confidence 34456677888888888888888885433 22222344 57888888887753
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373 101 KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY 133 (198)
Q Consensus 101 ~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~ 133 (198)
.++..+.+.-++.+...|+++.|+..|.++-..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345677888999999999999999999998763
No 148
>KOG0292|consensus
Probab=95.24 E-value=0.15 Score=48.02 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=95.7
Q ss_pred ccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH---hcCCHHHHH
Q psy12373 32 LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAK 108 (198)
Q Consensus 32 ~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~ 108 (198)
.|+.+-|.+.+.++++++....+|...-.+|+..-|..+|.+...|++.-=+|+ -.|+.++..++++ .-.+.....
T Consensus 656 ~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYl-iTgn~eKL~Km~~iae~r~D~~~~~ 734 (1202)
T KOG0292|consen 656 CGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYL-ITGNLEKLSKMMKIAEIRNDATGQF 734 (1202)
T ss_pred cCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEE-EeCCHHHHHHHHHHHHhhhhhHHHH
Confidence 466677888888999999999999999999999999999999999999999999 7788888766554 323333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
+-+-| .||.++=++.+..+|..+.|.--|..||..+..+.+.
T Consensus 735 qnalY---l~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ 776 (1202)
T KOG0292|consen 735 QNALY---LGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLG 776 (1202)
T ss_pred HHHHH---hccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHH
Confidence 44444 3788999999999999999999999999766555543
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.24 E-value=0.34 Score=39.70 Aligned_cols=83 Identities=7% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccCCHHHHHHH----HHhcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373 77 YDNVVRVDLDHLNDIRHAVDI----VKAKKC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 148 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~~a~~l----~~~~~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~ 148 (198)
|..|+.+.. ..|++++|+.. .+.+|+ +...+++|..+...|++++|+..|.+.= ..++
T Consensus 146 Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv---------~~yP---- 211 (263)
T PRK10803 146 YNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV---------KNYP---- 211 (263)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHCC----
Confidence 444466655 34667766543 344554 3566788999999999998887654321 1111
Q ss_pred HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 149 FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.....++.+++++..+...|++++|
T Consensus 212 -------~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 212 -------KSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred -------CCcchhHHHHHHHHHHHHcCCHHHH
Confidence 1234688888999999889998888
No 150
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.23 E-value=0.064 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..+..+|..+...|++++|+++|.++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356788999999999999999999998
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.20 E-value=0.5 Score=35.46 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+.+|.++ +.+.. +..+ .+.....+|..+...|++++|+.+|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~l~~---~~~~----------~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEA------MRLEI---DPYD----------RSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------Hhccc---cchh----------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445677899999999999999999888 44322 1111 1123456788888899999998887
Q ss_pred HHcC
Q psy12373 128 ILSK 131 (198)
Q Consensus 128 ~~ag 131 (198)
.++=
T Consensus 96 ~~Al 99 (168)
T CHL00033 96 FQAL 99 (168)
T ss_pred HHHH
Confidence 5543
No 152
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.17 E-value=0.31 Score=38.44 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHcC-----CH------HHHHHHHHHccCHHHHHhhhhcc----C-ChH---HHHHHHHHHHHc------
Q psy12373 7 TLDRGKWTLYESAG-----NY------EKAATCYIQLKNWTKIGQLLPHI----K-SAT---TFIQYAKAKEAM------ 61 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g-----~~------~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~---l~~~~A~~~e~~------ 61 (198)
++|++|...|++.= ++ -....+|...++|+.|...+... + ++. .+..+|..+...
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~ 126 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR 126 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence 66777777776431 11 22335667778888877666532 1 222 466677766654
Q ss_pred --CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHH-HHHhcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 62 --GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD-IVKAKKCT-EGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 62 --g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~-l~~~~~~~-~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
|++++|++.|.++ ++..- ....-.++.. +....... .....+|..+...|++.+|+..|.++
T Consensus 127 ~~~~~~~A~~~~~~~------~~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 127 DQTAAREAFEAFQEL------IRRYP-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred CHHHHHHHHHHHHHH------HHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7889999988876 33333 1111112211 11111111 11234677777788888888777775
No 153
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.10 E-value=0.13 Score=32.76 Aligned_cols=52 Identities=25% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.|.+.+++++|++++.+. ..+ ..+++.++...|..+...|++.+|++.|.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~------l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERA------LEL--DPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHH------HHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 445555555555554322 111 2337788888999999999999999999887
No 154
>KOG1129|consensus
Probab=95.07 E-value=1.1 Score=38.03 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCH-------HHHHHHHhhccCCHHHHHHHHHhc---CCHHHHH--HHHHHHHhcCCHH
Q psy12373 54 YAKAKEAMGSYRESVGAYERAEDY-------DNVVRVDLDHLNDIRHAVDIVKAK---KCTEGAK--RIADYCNKHGDFG 121 (198)
Q Consensus 54 ~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av~l~~~~~~~~~~a~~l~~~~---~~~~~~~--~~A~~~~~~g~~~ 121 (198)
+|+-+-.-|.+.+|.+.+..+-.- .-.-++|. +..++..|..+..+. .+.++.. -.|+..+..++.+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 356666677777776666655422 22334455 566666666655432 2223332 4677888888888
Q ss_pred HHHHHHHHcCC---------------------hHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 122 AAIHFLILSKC---------------------YQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 122 ~Av~~y~~ag~---------------------~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+|+++|...-+ ++.|++.+ ..++.++ ..+|+++.+++-.+.--++|+-+
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY---------RRiLqmG-~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY---------RRILQMG-AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH---------HHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence 88888876432 44444433 3332233 35788888888777666666544
No 155
>KOG2005|consensus
Probab=95.05 E-value=1.1 Score=41.26 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=84.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC---hHHHHHHHHHH---HHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFIQYAKAK---EAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~---~~l~~~~A~~~---e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
-..++.+.+--..|+++....+.++.+...++...- -..+.-++.++ ++.-..+-|...|.|-+++.+|+++.+
T Consensus 184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai 263 (878)
T KOG2005|consen 184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI 263 (878)
T ss_pred HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334455555556666776666666666555554331 12223445555 566667889999999999999999999
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHcCChHHH
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF-----GAAIHFLILSKCYQDA 136 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~-----~~Av~~y~~ag~~~~A 136 (198)
++++.+.+.++.....++..-++++-.+.+.|-+ +++++--...++..+-
T Consensus 264 -~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Lse~ 318 (878)
T KOG2005|consen 264 -RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLSEH 318 (878)
T ss_pred -hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHHHH
Confidence 9999999999999988888777776666655543 2445555555554444
No 156
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.86 E-value=1.8 Score=41.07 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh--------------------cc------CChHHHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP--------------------HI------KSATTFIQYAKAKEA 60 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~--------------------~~------~~~~l~~~~A~~~e~ 60 (198)
..++.|+..|...|++..|++.+..++++..+.+++. .+ .++.+....+..+-.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3456778888888888888888888888876544332 11 123333444555567
Q ss_pred cCCHHHHHHHHHHhcCH------------HHH-----HHHHhhccCCHHHHHHHHHhc----CCHH------HHHHHHHH
Q psy12373 61 MGSYRESVGAYERAEDY------------DNV-----VRVDLDHLNDIRHAVDIVKAK----KCTE------GAKRIADY 113 (198)
Q Consensus 61 ~g~~~~A~~~Y~ka~~~------------~~a-----v~l~~~~~~~~~~a~~l~~~~----~~~~------~~~~~A~~ 113 (198)
.|++++|..++..+.+. ... -.++. ..|++++|....++. +... ....++..
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI-NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 77888887777654211 000 12233 457777777666532 1111 11234455
Q ss_pred HHhcCCHHHHHHHHHHc
Q psy12373 114 CNKHGDFGAAIHFLILS 130 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~a 130 (198)
+...|++++|...+.++
T Consensus 501 ~~~~G~~~~A~~~~~~a 517 (903)
T PRK04841 501 HHCKGELARALAMMQQT 517 (903)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 56677777766665443
No 157
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=1.2 Score=40.15 Aligned_cols=127 Identities=9% Similarity=0.103 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHH------HHcCCHHHHHHHHHHhcCHHHHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAK------EAMGSYRESVGAYERAEDYDNVVRVD 84 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~------e~~g~~~~A~~~Y~ka~~~~~av~l~ 84 (198)
+-..+|.+.+--..||.+....|-++++...++...-..++..+-..- |.....+.|...|.+.|+..+||...
T Consensus 185 ~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~a 264 (881)
T COG5110 185 EIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGA 264 (881)
T ss_pred HHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334566666767778888888888888777765433222222222211 44445788999999999999999999
Q ss_pred hhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH----HHHHHHHHHcCChHHHHH
Q psy12373 85 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF----GAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~----~~Av~~y~~ag~~~~A~~ 138 (198)
+ ++++.+.+...++...+|..-++++-.+.+..-+ ++-++--...|...+-|+
T Consensus 265 i-Rl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng~lsdhf~ 321 (881)
T COG5110 265 I-RLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNGYLSDHFR 321 (881)
T ss_pred H-hcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCCcHHHHHH
Confidence 9 8999999999999998988877777666544322 122444444555554443
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.74 E-value=0.7 Score=40.16 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=58.9
Q ss_pred HHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHH
Q psy12373 25 AATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a 94 (198)
.++++...+.++.+..++.++. +++....+|+.+-..++-.+|++...++=. ..-.++.++ ..++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHH
Confidence 3444445555555555555432 567777888888888888888888777642 122344456 56888888
Q ss_pred HHHHHhcC--CHHHH---HHHHHHHHhcCCHHHHH
Q psy12373 95 VDIVKAKK--CTEGA---KRIADYCNKHGDFGAAI 124 (198)
Q Consensus 95 ~~l~~~~~--~~~~~---~~~A~~~~~~g~~~~Av 124 (198)
..++++.- .|..+ ..+|+.|...||++.|+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 88887532 23333 23444444444444444
No 159
>KOG3785|consensus
Probab=94.67 E-value=0.45 Score=40.76 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCC----------HHHHHHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 10 RGKWTLYESAGN----------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 10 ~~Aa~~y~~~g~----------~~~Ai~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-|.+.|.-.|. -+..+.+|.-..+|+.+...+.++. +..+...+|+..-..|++.+|.++|.+.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 345566655543 2445566777788998877776543 7778889999999999999999999998
Q ss_pred cCHH---------HHHHHHhhccCCHHHHHHHHHhcCCHH-HH---HHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373 75 EDYD---------NVVRVDLDHLNDIRHAVDIVKAKKCTE-GA---KRIADYCNKHGDFGAAIHFLILSKCY 133 (198)
Q Consensus 75 ~~~~---------~av~l~~~~~~~~~~a~~l~~~~~~~~-~~---~~~A~~~~~~g~~~~Av~~y~~ag~~ 133 (198)
.+++ -..|+++ +.+.++-|..+.-+...+. .+ ..+|+-|-+ +-+||.-++.|
T Consensus 420 s~~~ikn~~~Y~s~LArCyi-~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk------~~eFyyaaKAF 484 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYI-RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYK------ANEFYYAAKAF 484 (557)
T ss_pred cChhhhhhHHHHHHHHHHHH-hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHH------HHHHHHHHHhh
Confidence 8764 3468888 8899999988876554433 22 246766653 44455544443
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.63 E-value=0.3 Score=41.94 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc--cCHHH-HHhhhh--------------------ccCChHHHHHHHHHHHHcCCHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQL--KNWTK-IGQLLP--------------------HIKSATTFIQYAKAKEAMGSYRES 67 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~--~~~~~-a~~l~~--------------------~~~~~~l~~~~A~~~e~~g~~~~A 67 (198)
..+..|+++|+.+.|.++-.++ .+|+. ..+++. +..+|.++..+|+.+-..+.|.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 4677888999999998887754 33332 333332 223677777788888888888888
Q ss_pred HHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 68 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 68 ~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++++.+ +. .-++......+|..|.+.|+...|-+.+..+
T Consensus 348 ~~~leaA------l~-----------------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 348 SEALEAA------LK-----------------LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHH------Hh-----------------cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8777755 11 0133334456888899999988887766543
No 161
>KOG0553|consensus
Probab=94.46 E-value=0.15 Score=42.18 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHcCCHH--------HHHHHHHHccCHHHHHhhhhc---cC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYE--------KAATCYIQLKNWTKIGQLLPH---IK--SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~--------~Ai~~y~~~~~~~~a~~l~~~---~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
++|++|...|.++=.++ .=...|.++|+++.|+.=+.. ++ -...+..+|..+-..|.+++|++.|.|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 56667766666553322 112346677878777655542 33 345777889999999999999999999
Q ss_pred hc
Q psy12373 74 AE 75 (198)
Q Consensus 74 a~ 75 (198)
+-
T Consensus 175 aL 176 (304)
T KOG0553|consen 175 AL 176 (304)
T ss_pred hh
Confidence 84
No 162
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.44 E-value=1.8 Score=35.19 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHHh-----cCCHHHHHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVKA-----KKCTEGAKRIADY 113 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~ 113 (198)
+++.++.-+|+-.-..|+|.+|+..+.++-. ..+..-++++++|+.+.|-.--++ -.++...-.++-+
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 3555666677777777777777777777642 134444455566776665432221 1234455567777
Q ss_pred HHhcCCHHHHHHHHHHcCC
Q psy12373 114 CNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~ 132 (198)
+.-.||++.|+.++..+-.
T Consensus 178 ~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 8888888888887776644
No 163
>KOG0548|consensus
Probab=94.42 E-value=0.68 Score=41.26 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=48.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc--CCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q psy12373 54 YAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK--KCTEG---AKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 54 ~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~--~~~~~---~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
+|..+-..++++.|+++|.++-...+--++.. .++..+++.+..... -+|+. ...-++-+-+.|||..||..|.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls-~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS-KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 55677888999999999999754444444444 455556555544321 12222 2344666778889999988887
Q ss_pred Hc
Q psy12373 129 LS 130 (198)
Q Consensus 129 ~a 130 (198)
+|
T Consensus 383 eA 384 (539)
T KOG0548|consen 383 EA 384 (539)
T ss_pred HH
Confidence 74
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.40 E-value=0.21 Score=31.28 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 103 CTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
+++....+|+.+.+.|++++|...+.+
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555667777666666666555544
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=94.33 E-value=0.3 Score=37.13 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
.-|=.+|. .|+++.|..+|.-+-.+ ...++....-+|-.+...|+|+.|+.+|..+. -+-.
T Consensus 42 ~~Ay~~y~-~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~------~l~~---- 102 (165)
T PRK15331 42 AHAYEFYN-QGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF------TLLK---- 102 (165)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hccc----
Confidence 33434443 36666666666443221 22356667777888888888888888888772 1111
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+|......|+-+...|+.++|...|..+
T Consensus 103 ------------~dp~p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 103 ------------NDYRPVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred ------------CCCCccchHHHHHHHhCCHHHHHHHHHHH
Confidence 23344556677777778888877755443
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.26 E-value=2.8 Score=39.83 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH----------------HHHHhhccCCHHHHHHHHHhc-------CCHH-
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNV----------------VRVDLDHLNDIRHAVDIVKAK-------KCTE- 105 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a----------------v~l~~~~~~~~~~a~~l~~~~-------~~~~- 105 (198)
.+..+|..+...|++++|..++.++-+.... ..++. ..|++++|...+.+. ....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 3456688888899999998887775443111 12344 458888887666532 1111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 106 --GAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 106 --~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
....+|......|+++.|...+..+.
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12235667778888888887776663
No 167
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.23 E-value=0.16 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++..+|..+...|++++|+++|.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 56788999999999999999999998
No 168
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.05 E-value=0.12 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
|.+...+|+.+...|++++|+++|.++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788999999999999999999988
No 169
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.05 E-value=0.11 Score=28.86 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q psy12373 108 KRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 108 ~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
..+|+.+.+.|++++|+++|.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4678888999999999998877
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.89 E-value=0.17 Score=42.06 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCHH---HHHHHHhhccCCHHHHHHHHHh
Q psy12373 55 AKAKEAMGSYRESVGAYERAEDYD---NVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka~~~~---~av~l~~~~~~~~~~a~~l~~~ 100 (198)
|..+-..|++++|++...+.+..+ -.|.+++ ..|++|-|.+..+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L-~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKGGSLELLALAVQILL-KMNRPDLAEKELKN 156 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 455555666666666666655443 2355555 55666666555543
No 171
>KOG3060|consensus
Probab=93.87 E-value=3.1 Score=34.10 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
++....--|-.+|..|+|++|+++|...
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 5666777799999999999999999875
No 172
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.74 E-value=0.33 Score=44.61 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 86 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~ 86 (198)
..+....|..++..|.+++|+.+|.-+|++..+|++...
T Consensus 414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 414 REIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456667899999999999999999999999999999983
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=93.70 E-value=0.48 Score=36.02 Aligned_cols=87 Identities=8% Similarity=-0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
+-++..|--+-..|++++|..+|.-. + ..+-|+ ++-..-+|-.+...+++++|+.+|.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L----------~-~~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFL----------C-IYDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH----------H-HhCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888999999999888653 2 112222 2334457777888899999999998
Q ss_pred HcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 129 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 129 ~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.|.. ++ ..+|.-++..|+.|...|+...|
T Consensus 96 ~A~~----------------------l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 96 VAFT----------------------LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHH----------------------cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 7765 22 23445567777777777777777
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.62 E-value=2.1 Score=35.51 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=28.3
Q ss_pred HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 27 TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
.+|...|+++.|.+++....+.++..-.-..+-..+.++.|.+.+....
T Consensus 110 ~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444556666666666555555555445555666667777766666665
No 175
>KOG1130|consensus
Probab=93.58 E-value=0.62 Score=40.67 Aligned_cols=67 Identities=7% Similarity=0.158 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
.+..+..+|+-+--.|+++.|+++|.+. +.+.+ .+|+-. -....++.+++.|--..++.+||.+
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~t------l~LAi-elg~r~---------vEAQscYSLgNtytll~e~~kAI~Y 297 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLT------LNLAI-ELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITY 297 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHH------HHHHH-Hhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445567788888889999999999887 77777 545422 1123355667766666667777777
Q ss_pred HHH
Q psy12373 127 LIL 129 (198)
Q Consensus 127 y~~ 129 (198)
+.+
T Consensus 298 h~r 300 (639)
T KOG1130|consen 298 HQR 300 (639)
T ss_pred HHH
Confidence 655
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.50 E-value=0.27 Score=26.31 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++..+|..+...|++++|+++|.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778999999999999999999998
No 177
>KOG2066|consensus
Probab=93.49 E-value=1.8 Score=40.44 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q psy12373 58 KEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 124 (198)
Q Consensus 58 ~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av 124 (198)
|...|-++|-+-+.-+.|+-.+|+.|.++.++++++|++.|++..+++.=..+-.+....-.+-.++
T Consensus 644 C~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 644 CSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHHH
Confidence 4444455555555566666666666666666666666666666666655444444444444444444
No 178
>KOG2168|consensus
Probab=93.49 E-value=0.67 Score=43.51 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..++....|+.++..|.|+.||.+|..+|++..||.+..
T Consensus 621 ~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~lin 659 (835)
T KOG2168|consen 621 LQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELIN 659 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHH
Confidence 356777889999999999999999999999999999887
No 179
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.48 E-value=2.5 Score=40.58 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=76.0
Q ss_pred HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHH
Q psy12373 22 YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD 96 (198)
Q Consensus 22 ~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~ 96 (198)
++..+..|...++++.+.+++.. .+...+++..|-.+...+++..|.-. .++++.. ..++|.-...
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------~~l~~~~-~~~~~~~ve~ 104 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--------NLIDSFS-QNLKWAIVEH 104 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------hhhhhcc-cccchhHHHH
Confidence 45666777777788877777652 22556777777777777776666544 3455555 4455643333
Q ss_pred HHHh---cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHH
Q psy12373 97 IVKA---KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFE 172 (198)
Q Consensus 97 l~~~---~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e 172 (198)
++.. ++. ..+..-+|..|.+.|+.++|...|.++=. + .+.++.+++++|-+|.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----------------------~-D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----------------------A-DRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------c-CcccHHHHHHHHHHHH
Confidence 3321 222 22333456666666666655555443322 1 2567888999999888
Q ss_pred hCCChhhH
Q psy12373 173 EDKGVLTS 180 (198)
Q Consensus 173 ~~g~~~~A 180 (198)
.. +.++|
T Consensus 162 e~-dL~KA 168 (906)
T PRK14720 162 EE-DKEKA 168 (906)
T ss_pred Hh-hHHHH
Confidence 88 88888
No 180
>KOG0624|consensus
Probab=93.28 E-value=4.2 Score=34.92 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=34.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 122 AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 122 ~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
---..|...|++.+|++.|.+ + |. .+++.+++..-|..|.....|+.|
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~e---------v--L~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKE---------V--LDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred eeeecccccCCHHHHHHHHHH---------H--HhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 345678888889999998843 3 33 234577888888888877778777
No 181
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.27 E-value=3.1 Score=39.47 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc--------------------c------CChHHHHHHHHHHHHc
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH--------------------I------KSATTFIQYAKAKEAM 61 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~--------------------~------~~~~l~~~~A~~~e~~ 61 (198)
.+..|++.|...|.++.||+.-+.+++++.+..++.+ + +.|.+....|=...+.
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~ 428 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ 428 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Confidence 4567888888888888888888888888887777652 2 2556666667677788
Q ss_pred CCHHHHHHHHHHhcCH-------------------HHHHHHHhhccCCHHHHHHHHHhc----CC----HHHHH--HHHH
Q psy12373 62 GSYRESVGAYERAEDY-------------------DNVVRVDLDHLNDIRHAVDIVKAK----KC----TEGAK--RIAD 112 (198)
Q Consensus 62 g~~~~A~~~Y~ka~~~-------------------~~av~l~~~~~~~~~~a~~l~~~~----~~----~~~~~--~~A~ 112 (198)
+.+.+|..+-.+...+ ...|.++ .|+++++.++++.. +. +.... -++.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~---~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN---RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 8888887765544322 2233333 37889998888742 21 11111 2355
Q ss_pred HHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 113 YCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 113 ~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
...-.|++++|.-+-. +|-+++.+++.
T Consensus 506 a~~~~G~~~~Al~~~~------~a~~~a~~~~~ 532 (894)
T COG2909 506 AAHIRGELTQALALMQ------QAEQMARQHDV 532 (894)
T ss_pred HHHHhchHHHHHHHHH------HHHHHHHHccc
Confidence 5556677776655443 33445555544
No 182
>KOG0550|consensus
Probab=93.25 E-value=0.86 Score=39.64 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCH------------HHHHHHHhhccCCHHHHHHHHHhcCCHHHH-----HHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDY------------DNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-----KRIADYCN 115 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~------------~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-----~~~A~~~~ 115 (198)
.-|+..-+.|.+..|.++|..+=.+ -+-.-+.+ .+|+.++|+.-|.+.-+-+.. ..-|+-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 3488889999999999999987532 11122233 578999998877654332222 22366677
Q ss_pred hcCCHHHHHHHHHHcCChHHH
Q psy12373 116 KHGDFGAAIHFLILSKCYQDA 136 (198)
Q Consensus 116 ~~g~~~~Av~~y~~ag~~~~A 136 (198)
..++|++||+-|.+|.+.+.-
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 889999999999998875443
No 183
>KOG2376|consensus
Probab=93.03 E-value=5.3 Score=36.36 Aligned_cols=152 Identities=10% Similarity=0.003 Sum_probs=87.5
Q ss_pred HHHHHccCHHHHHhhhhc----cC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHH
Q psy12373 27 TCYIQLKNWTKIGQLLPH----IK-SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRH 93 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~----~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~ 93 (198)
.++...+.|++|...+.+ .+ ++..++..=-.+-..+.|++|.+.-.+-+- +++|--.| ++|..|+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y--rlnk~De 97 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY--RLNKLDE 97 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH--HcccHHH
Confidence 355566667776555543 22 444444444445566678888754443331 23333333 5799999
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHc-CC----hHHHHHHHHHcchhhHHhhhh---hhcCCCCHHH
Q psy12373 94 AVDIVKAKKC--TEGAKRIADYCNKHGDFGAAIHFLILS-KC----YQDAFNLSQQHKKLHEFGKFL---LEEDEPNPVE 163 (198)
Q Consensus 94 a~~l~~~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~a-g~----~~~A~~la~~~~~~~~~~~~~---~l~~~~~~~~ 163 (198)
|......... +.....-|++|-+.|+|++|+..|..- .+ +++=++.....-....-...+ ...+.++-+.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 9887763322 223445699999999999999999875 22 222222221110000001011 1234667889
Q ss_pred HHHHHHHHHhCCChhhH
Q psy12373 164 LKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 164 ~~~~A~~~e~~g~~~~A 180 (198)
+++.|..+.+.|+|.+|
T Consensus 178 ~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhcccHHHH
Confidence 99999999999999888
No 184
>KOG0307|consensus
Probab=92.88 E-value=2.3 Score=41.01 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=80.5
Q ss_pred HcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373 60 AMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIA-DYCNKHGDFGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 60 ~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A-~~~~~~g~~~~Av~~y~~ag~~~~A~~ 138 (198)
..++++..|.-=.-.||+.+||+.|+ ..+++-+|+=|+..+. .+...... +|+.+.+.-..-|-+-+..++|..-+.
T Consensus 486 ~~~d~d~~Is~alitgd~~~aV~~cl-~~~~~a~AliiA~~gg-~el~~~t~~~Y~~k~~~k~s~li~a~v~~d~~~~ve 563 (1049)
T KOG0307|consen 486 LDSDIDGLISEALITGDFKSAVELCL-EANKMADALIIAHAGG-TELLESTRDKYLAKSNSKLSRLIYAMVNRDLDDYVE 563 (1049)
T ss_pred CCCcHHHHHHHHHHhccHHHHHHHHH-hhhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChHHHHHHHHHhhhHHHHHh
Confidence 34567788877778899999999999 7788888887776543 33333333 455555554333333334444666665
Q ss_pred HHHHcchhhHHhhhhhhcC-CCCHHHHHHHHHHHHhCCChhhH-----HhcCChhhHHhhh
Q psy12373 139 LSQQHKKLHEFGKFLLEED-EPNPVELKRLAIHFEEDKGVLTS-----FRVSQQSRAMPCS 193 (198)
Q Consensus 139 la~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~e~~g~~~~A-----~~ag~~~~Al~l~ 193 (198)
.+.-..--+.+..|+++.+ +.-+++.-.++..+++.|++..+ +-+|..++...+-
T Consensus 564 ~~~~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w 624 (1049)
T KOG0307|consen 564 TCEVKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIW 624 (1049)
T ss_pred hcchhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHH
Confidence 5543321223333333333 44566777788888888865554 7777777766553
No 185
>KOG2066|consensus
Probab=92.35 E-value=5 Score=37.65 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
+..+...+|..+--.++|..|...|.++.+.
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 4567777899999999999999999999875
No 186
>KOG2280|consensus
Probab=92.34 E-value=3.4 Score=38.51 Aligned_cols=145 Identities=11% Similarity=0.107 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhh-hccC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH-
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLL-PHIK----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV- 80 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~-~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a- 80 (198)
...+.|+..|.++......+++..+.-..-++.+-+ .+.. +-.+. .-=..+-..|+-..|.+.=....=+++=
T Consensus 639 ~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~-dTv~~li~~g~~k~a~ql~~~FkipdKr~ 717 (829)
T KOG2280|consen 639 PALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH-DTVTTLILIGQNKRAEQLKSDFKIPDKRL 717 (829)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH-HHHHHHHHccchHHHHHHHHhcCCcchhh
Confidence 455677777877766555555444322111111111 1100 11111 1112233456666666655444422111
Q ss_pred ----HHHHhhccCCHHHHHHHHHhcCCHHH-------H------HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 81 ----VRVDLDHLNDIRHAVDIVKAKKCTEG-------A------KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 81 ----v~l~~~~~~~~~~a~~l~~~~~~~~~-------~------~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
+..+. ..++|++..+.+++-++|-. + ....+|.-+.++..+=+.+|.+.|.+.+|+++|-++
T Consensus 718 ~wLk~~aLa-~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 718 WWLKLTALA-DIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHHHHH-hhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHh
Confidence 33344 55788888888876543321 1 123455667777778899999999999999999999
Q ss_pred chhhHHhhhh
Q psy12373 144 KKLHEFGKFL 153 (198)
Q Consensus 144 ~~~~~~~~~~ 153 (198)
..-..+.++.
T Consensus 797 rd~~~L~ev~ 806 (829)
T KOG2280|consen 797 RDGAELSEVL 806 (829)
T ss_pred cChHHHHHHH
Confidence 8877777764
No 187
>KOG2002|consensus
Probab=92.32 E-value=0.37 Score=45.74 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=45.0
Q ss_pred cCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH
Q psy12373 33 KNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 107 (198)
Q Consensus 33 ~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~ 107 (198)
|+|..|..+..++. ..+.+..+|..+...|+|..||++|+.+ ++... .+.++++.
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~------lkkf~--------------~~~~~~vl 719 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC------LKKFY--------------KKNRSEVL 719 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH------HHHhc--------------ccCCHHHH
Confidence 44555555554332 3455666777777777777777777766 22222 12344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 108 KRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 108 ~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
..+|+.+-..|++.+|.+...+|-+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5566666666666666665555544
No 188
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.30 E-value=0.49 Score=26.28 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..+..+|..+...|++++|..+|.++ +.++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA------LEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH------HHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH------HHHHH
Confidence 45778999999999999999999998 77766
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.29 E-value=4.4 Score=31.54 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+|+.|...|.+ |++..|++.|.+.. ......+ .+....++|..+...|++.+|+..|.+-
T Consensus 7 ~lY~~a~~~~~~-g~y~~Ai~~f~~l~------~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 7 ALYQKALEALQQ-GDYEEAIKLFEKLI------DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHC-T-HHHHHHHHHHHH------HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHH------HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356666655554 88888888885542 1122222 4567788999999999999999988874
No 190
>KOG2168|consensus
Probab=92.20 E-value=0.79 Score=43.05 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
...+|+-+...|.|+.||.+|..+|+|+.|+.+....
T Consensus 625 ~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~ 661 (835)
T KOG2168|consen 625 ILEVASEADEDGLFEDAILLYHLAGDYDKALELINKL 661 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4468899999999999999999999999999987443
No 191
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.11 E-value=2.6 Score=37.26 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHccCHHHHHh----hhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhh
Q psy12373 20 GNYEKAATCYIQLKNWTKIGQ----LLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLD 86 (198)
Q Consensus 20 g~~~~Ai~~y~~~~~~~~a~~----l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~ 86 (198)
+.|..|+.-|. .++++.+.. |+...+ ++-+..-.+..+-..|...+|++.|.++-+. -.--++++
T Consensus 308 a~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all- 385 (484)
T COG4783 308 AQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL- 385 (484)
T ss_pred HHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-
Confidence 34555555443 345554433 343444 5566666788999999999999999998642 23345566
Q ss_pred ccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHH----HHHHHcCChHHHHHHHHHcc
Q psy12373 87 HLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAI----HFLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 87 ~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av----~~y~~ag~~~~A~~la~~~~ 144 (198)
..|++.+|+++.... .++..-..+|+.|...|+..+|. +.|-.+|.|++|+..+....
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 789999999887642 23555667999999999987765 45678999999988886553
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.88 E-value=0.66 Score=29.33 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 105 EGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 105 ~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
......|..+...|++.+|++.|.++
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445788888888888887766543
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.69 E-value=1.2 Score=39.28 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
++..+..+|..+...|+|++|+.+|.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rA 101 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETA 101 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999887
No 194
>KOG0543|consensus
Probab=91.52 E-value=1 Score=38.93 Aligned_cols=51 Identities=20% Similarity=0.394 Sum_probs=39.8
Q ss_pred HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 24 KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 24 ~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...-||.+++.|..|.+.+.+ ..+...+++.|+.+...|+|+.|+..|.++
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345577777888887777653 237778889999999999999999888887
No 195
>KOG1064|consensus
Probab=91.47 E-value=1.5 Score=44.73 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHH---Hhhhhc---------cC-------ChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKI---GQLLPH---------IK-------SATTFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a---~~l~~~---------~~-------~~~l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
-|-..|.+..|+..|.-.|+-++.-.-+ -|+.+. ++ -+.....-|=.+.....|+.|+-+|
T Consensus 1219 lAK~af~kn~dP~DaALfYLALkKk~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~AaaFF 1298 (2439)
T KOG1064|consen 1219 LAKAAFQKKRDPLDAALFYLALKKKQVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAAFF 1298 (2439)
T ss_pred HHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHHHH
Confidence 4556788899999999999877553322 222221 11 1222233344666778899999999
Q ss_pred HHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC-HH-HHHH-HHHH-H---HhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 72 ERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC-TE-GAKR-IADY-C---NKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 72 ~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~-~~-~~~~-~A~~-~---~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
.-+|....||++|++++++.+=|+-|+|-... .+ .... +-++ + ...+|+=.+--.|-.-++|..|+.-....
T Consensus 1299 LLagslkDAI~VC~kkl~DiQLALvI~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWiLkdy~rAl~tLl~~ 1377 (2439)
T KOG1064|consen 1299 LLAGSLKDAINVCCKKLNDIQLALVICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWILKDYTRALLTLLGQ 1377 (2439)
T ss_pred hhcchHHHHHHHHHHhhhhhhhhheeeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988885321 11 2112 2222 1 23566555666777777777776554333
No 196
>KOG1127|consensus
Probab=91.42 E-value=3.1 Score=40.10 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
.+.+..+|.++...-+..-|-++|-+|=+. ..+++.+. ..++|+.|..|+-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya-e~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA-EESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh-ccccHHHHHHHHHH
Confidence 456677899988888999999999998643 56688999 78999999998653
No 197
>KOG4162|consensus
Probab=91.36 E-value=3 Score=38.92 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~ 82 (198)
-|+.+|.+.++.+.+--|...+...+ .-.+..++..|..++-.|++.+|.+.|.-|-.. ...-.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34555555555555544443332222 114566777899999999999999999988632 33344
Q ss_pred HHhhccCCHHHHHH--HHHh----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 83 VDLDHLNDIRHAVD--IVKA----K-KCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 83 l~~~~~~~~~~a~~--l~~~----~-~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
++. ..|+..-+.. +.+. . .+++.=+.+|..+.+.||.++|++.|.-|
T Consensus 727 ~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 727 LLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 555 6676655554 3221 1 24666678899999999999999988654
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.23 E-value=0.35 Score=27.89 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
....+|+.+...|++++|++.|.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777777777777777776553
No 199
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.16 E-value=2.7 Score=32.25 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChH-----------HHHHHHHHcchhhHHhhh
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQ-----------DAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~-----------~A~~la~~~~~~~~~~~~ 152 (198)
...+|.||.+.||++.|++.|.++..+. .-++++...+.+..+...
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4468999999999999999999988742 236666666666544443
No 200
>KOG1174|consensus
Probab=90.85 E-value=2.9 Score=36.65 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc----C-ChHHHHHHH--HHHHHcCCHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI----K-SATTFIQYA--KAKEAMGSYRESVGAY 71 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~l~~~~A--~~~e~~g~~~~A~~~Y 71 (198)
++.++|+=.|..+ ..|+..+.+|.-.+.+..|.-++... + +...+.-+| -+++.-.--+.|.++|
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 4555555555544 45678899999999999877666531 1 334444443 2344444558899999
Q ss_pred HHhc----CHHHHH----HHHhhccCCHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 72 ERAE----DYDNVV----RVDLDHLNDIRHAVDIVKAK----KCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 72 ~ka~----~~~~av----~l~~~~~~~~~~a~~l~~~~----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+++- +|..|| +++. .-|...+++.+.+++ ++......+|++|...+.+.+|++.|..|=+
T Consensus 428 ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 428 EKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9876 345554 4555 557788888888764 3334455789999999999999999988755
No 201
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=90.76 E-value=4.4 Score=33.49 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=60.8
Q ss_pred HHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHH-Hhc---CCH----HH--HHHHHHHcCChHHHH
Q psy12373 68 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC-NKH---GDF----GA--AIHFLILSKCYQDAF 137 (198)
Q Consensus 68 ~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~-~~~---g~~----~~--Av~~y~~ag~~~~A~ 137 (198)
+.-+...|+.+.||++|+ ..++|-.|+=|+... .++....+.+.| ... ++. .. .+-+-+-+|++..++
T Consensus 2 I~~~Ll~G~~~~Av~~al-~~~~wa~ALlLAs~~-g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v 79 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELAL-DNGLWAHALLLASSL-GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAV 79 (284)
T ss_dssp HHHHHHTT-HHHHHHHHH-HTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHH
T ss_pred HHHHHhCCCHHHHHHHHH-HCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHH
Confidence 345778899999999999 779999999888764 444444443333 222 222 11 223345677777776
Q ss_pred HHHHHc------------chhhHHhhhh-hhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCC
Q psy12373 138 NLSQQH------------KKLHEFGKFL-LEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQ 185 (198)
Q Consensus 138 ~la~~~------------~~~~~~~~~~-~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~ 185 (198)
.-.... +.+..+..++ +=...........++..+.+.|+...| +-+|.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~ 144 (284)
T PF12931_consen 80 DELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGN 144 (284)
T ss_dssp HHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHhccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCC
Confidence 543322 2343333332 112223345666799999999998888 66654
No 202
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.52 E-value=0.68 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
....+|..+...|++++|++.|.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456888899999999999988765
No 203
>KOG0307|consensus
Probab=90.43 E-value=12 Score=36.33 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHH-HHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ-YAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~-~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+.++.....=.-.||+..||+..+..+.+..|.-++.. ...+++.. .-+++...++--.=+-+=.--.|+...|+.+-
T Consensus 488 ~d~d~~Is~alitgd~~~aV~~cl~~~~~a~AliiA~~-gg~el~~~t~~~Y~~k~~~k~s~li~a~v~~d~~~~ve~~~ 566 (1049)
T KOG0307|consen 488 SDIDGLISEALITGDFKSAVELCLEANKMADALIIAHA-GGTELLESTRDKYLAKSNSKLSRLIYAMVNRDLDDYVETCE 566 (1049)
T ss_pred CcHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhCChHHHHHHHHHhhhHHHHHhhcc
Confidence 34555555556678888888888887777776555433 33344433 34555555554222222233346777777774
Q ss_pred hccCCHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCH-HHHHHHHHHcCChHHHHHHHHHcchh--------hHHhhh
Q psy12373 86 DHLNDIRHAVDIVKAKKC----TEGAKRIADYCNKHGDF-GAAIHFLILSKCYQDAFNLSQQHKKL--------HEFGKF 152 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~----~~~~~~~A~~~~~~g~~-~~Av~~y~~ag~~~~A~~la~~~~~~--------~~~~~~ 152 (198)
..+|.++...+-.... .+.+..++..++..|++ ..|+..|+-+|..++.+.+=.+.... +.++++
T Consensus 567 --~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~~~~~y~~~~e~l 644 (1049)
T KOG0307|consen 567 --VKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLELAPTSYQDLAEDL 644 (1049)
T ss_pred --hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhcccccchHHHHHHHHHH
Confidence 3678887665554433 22344788899999964 57888999999988876653322211 111222
Q ss_pred hh----h------c--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 153 LL----E------E--DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 153 ~~----l------~--~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+. + . ..+....+...|..+-.+|.+..|
T Consensus 645 ~~~~~~l~~~~~~~~~s~~l~~~~~~yanllasQG~~~~A 684 (1049)
T KOG0307|consen 645 MELTLKLAQFSANKTYSAGLAKKFSEYANLLASQGALAAA 684 (1049)
T ss_pred HHHHhhhhhcccCccccHHHHHHHHHHHHHHHhcChHHHH
Confidence 11 1 1 122345566667777788888777
No 204
>KOG2005|consensus
Probab=90.33 E-value=2.6 Score=38.90 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH---HHHHHH---HhcCCHHHHHHHHHHcCChHHHHHH
Q psy12373 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK---RIADYC---NKHGDFGAAIHFLILSKCYQDAFNL 139 (198)
Q Consensus 66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~---~~A~~~---~~~g~~~~Av~~y~~ag~~~~A~~l 139 (198)
+-+.++.+-+.-..||+++. ..+..|.....+.++.-..++. .++.++ +..--.+-|...|.|-+++.+|+++
T Consensus 183 ~iV~f~mkHNAE~eAiDlL~-Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ 261 (878)
T KOG2005|consen 183 EIVPFHMKHNAEFEAIDLLM-EVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVG 261 (878)
T ss_pred HHHHHHHhccchhHHHHHHH-HhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 34557777777788999999 7788998888887765443332 234443 3333457899999999999999999
Q ss_pred HHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC
Q psy12373 140 SQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175 (198)
Q Consensus 140 a~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g 175 (198)
|...+.++.+.++. ....+|....+++=-+-.+|
T Consensus 262 ai~l~~~~~v~~vf--~s~~D~~~kKQ~~ymLaR~~ 295 (878)
T KOG2005|consen 262 AIRLDDMKEVKEVF--TSCTDPLLKKQMAYMLARHG 295 (878)
T ss_pred HHhcCcHHHHHHHH--HhccCHHHHHHHHHHHHhcC
Confidence 99998887666663 33445555555554444444
No 205
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=2.5 Score=38.27 Aligned_cols=109 Identities=11% Similarity=0.075 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHcCChHHHHHH
Q psy12373 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC------NKHGDFGAAIHFLILSKCYQDAFNL 139 (198)
Q Consensus 66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~------~~~g~~~~Av~~y~~ag~~~~A~~l 139 (198)
+-+-+|.+-+--..||++++ ..|-.++....+..++-..++..+-..- +.....+.|...|.+-|+...|+.+
T Consensus 185 ~ivpfflkHNaE~dAiDlL~-Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~ 263 (881)
T COG5110 185 EIVPFFLKHNAEFDAIDLLV-EVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVG 263 (881)
T ss_pred HHhHHHHhcccchHHHHHHH-HhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44567888888888999998 7788888888877665333322211111 2333446788889999999999888
Q ss_pred HHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCCh
Q psy12373 140 SQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGV 177 (198)
Q Consensus 140 a~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~ 177 (198)
+.+.++.+.+.+. .....+|....+++-.+..++-|
T Consensus 264 aiRl~~~~~i~e~--~~a~~Dp~~kKQ~~YiLArq~~~ 299 (881)
T COG5110 264 AIRLQKSKEIIEY--VRAIEDPDYKKQCLYILARQNLY 299 (881)
T ss_pred HHhcccHHHHHHH--HHhccChHHHHHHHHHHHhccCC
Confidence 8888877555554 34455677777766655555444
No 206
>KOG2034|consensus
Probab=89.85 E-value=5.5 Score=37.83 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=50.6
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-HHHH
Q psy12373 4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD-NVVR 82 (198)
Q Consensus 4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~-~av~ 82 (198)
+-.+.-+..-+.|..-|++++|.++-... -++ -...+...|.++-..+.|..|+++|-+.-.+- +++=
T Consensus 356 ~vndE~R~vWk~yLd~g~y~kAL~~ar~~---p~~--------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaL 424 (911)
T KOG2034|consen 356 GVNDEARDVWKTYLDKGEFDKALEIARTR---PDA--------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVAL 424 (911)
T ss_pred eeccchHHHHHHHHhcchHHHHHHhccCC---HHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 33455666777777777777776654322 010 12456678899999999999999999986543 3333
Q ss_pred HHhhccCCHHHHHH
Q psy12373 83 VDLDHLNDIRHAVD 96 (198)
Q Consensus 83 l~~~~~~~~~~a~~ 96 (198)
=.+ .+++.+....
T Consensus 425 KFl-~~~~~~~L~~ 437 (911)
T KOG2034|consen 425 KFL-EINQERALRT 437 (911)
T ss_pred HHH-hcCCHHHHHH
Confidence 333 5556554333
No 207
>KOG4121|consensus
Probab=89.58 E-value=6.6 Score=37.89 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHcC
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF-GAAIHFLILSK 131 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~-~~Av~~y~~ag 131 (198)
.|=+.+-+.|.++.|++.=+|=.|++..|.+|- ++.+-++..+.-.... .+. ..| .-+.+.|++-|
T Consensus 777 dwlq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcd-qld~kdrLq~y~~~~~---------e~~---~eFs~~lf~y~ve~~ 843 (1128)
T KOG4121|consen 777 DWLQVLCKVGQYEQAIQIAEKYKDFQSLVQLCD-QLDQKDRLQDYETFFN---------EYP---KEFSFFLFEYLVEHG 843 (1128)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHH-hhCchhHHHHHHHHHH---------hhh---HHHHHHHHHHHHhhc
Confidence 466678888999999998888888888888887 6555453332222111 110 001 12333333333
Q ss_pred ChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373 132 CYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG 195 (198)
Q Consensus 132 ~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~ 195 (198)
++ .++ + ...+..+-.++++|+++.-..-+ +.-|+|++|.+.+++
T Consensus 844 k~----------------~eL--l--~~f~~~~s~L~qFf~~~d~~~lsWi~ei~nGdy~rAs~~L~~ 891 (1128)
T KOG4121|consen 844 KL----------------GEL--L--FRFPQQHSVLIQFFQERDYGHLSWIQEILNGDYERASNTLLN 891 (1128)
T ss_pred hH----------------HHH--H--hcchhhHHHHHHHHhhccccccHHHHHHhcCcHHHHHHHHHH
Confidence 32 222 1 23556666788888774333334 888888888876653
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.43 E-value=8.7 Score=30.27 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------HHHHHHhhccCCHHH---HHHHHH-hcCCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYD----------NVVRVDLDHLNDIRH---AVDIVK-AKKCTEGAKRIAD 112 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------~av~l~~~~~~~~~~---a~~l~~-~~~~~~~~~~~A~ 112 (198)
|+.++.-+|+..-..+++..|....++.+.+. ---|.+- ..|...+ +++.+- -.|.++..+.++.
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e 201 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPGPQARIYYAE 201 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66677777777777777777777666665431 2233333 4455443 334433 2466777888999
Q ss_pred HHHhcCCHHHHH
Q psy12373 113 YCNKHGDFGAAI 124 (198)
Q Consensus 113 ~~~~~g~~~~Av 124 (198)
++.++|..++|-
T Consensus 202 ~La~qgr~~ea~ 213 (251)
T COG4700 202 MLAKQGRLREAN 213 (251)
T ss_pred HHHHhcchhHHH
Confidence 999999776653
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.19 E-value=1.9 Score=31.31 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..++..+-+.+...|+..+|++.|.+.
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445555555555666666666665555
No 210
>KOG1125|consensus
Probab=89.13 E-value=0.68 Score=41.59 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRIADYCNKHGDFGAAI 124 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~A~~~~~~g~~~~Av 124 (198)
.|+++..-+|-.|-..|+|+.|++||..| ++ + ++. -... -.++-.+....+..+||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~A------L~--v----~Pn-----------d~~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAA------LQ--V----KPN-----------DYLLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHH------Hh--c----CCc-----------hHHHHHHhhHHhcCCcccHHHH
Confidence 47788888888888888888888888776 21 1 111 1111 13566677777889999
Q ss_pred HHHHHcCC
Q psy12373 125 HFLILSKC 132 (198)
Q Consensus 125 ~~y~~ag~ 132 (198)
..|.+|-+
T Consensus 485 sAY~rALq 492 (579)
T KOG1125|consen 485 SAYNRALQ 492 (579)
T ss_pred HHHHHHHh
Confidence 99998755
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.79 E-value=6.4 Score=34.99 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++++...|+++.||++|.++-.-..-. +.+. .-.+..+|-.+...++|++|.++|.+.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~-~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEW---KQLH-HLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhH---HhHH-HHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 5677777888888888887543211110 0111 122335566677777888887777665
No 212
>KOG2280|consensus
Probab=88.48 E-value=2.4 Score=39.53 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=59.6
Q ss_pred HHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---HHHHHHHHhhccCCHHHHHHHHH
Q psy12373 25 AATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERAED---YDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
-+.-.+..|+-.+|.++.. +++++.++-.-...+.+.++|++=.++=..-.. |.=-|..|+ ..++.++|.+.+.
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~-~~~n~~EA~KYip 768 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACL-KQGNKDEAKKYIP 768 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHH-hcccHHHHhhhhh
Confidence 3444455566666666665 344555554445666666666654443333221 344566666 5566666666554
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
+.+... .-..++...|++.+|+++=.+.++-+.=..+.
T Consensus 769 rv~~l~---ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~ 806 (829)
T KOG2280|consen 769 RVGGLQ---EKVKAYLRVGDVKEAADLAAEHRDGAELSEVL 806 (829)
T ss_pred ccCChH---HHHHHHHHhccHHHHHHHHHHhcChHHHHHHH
Confidence 433222 22344555566666666666666655554444
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.47 E-value=0.96 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.4
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373 44 HIKSATTFIQYAKAKEAMGSYRESVG 69 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g~~~~A~~ 69 (198)
..+++..+..+|..+...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 44588999999999999999999863
No 214
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.27 E-value=9.7 Score=29.06 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHhcC-CHHHHHHHHHHcCChHHHHHHHHHcchhhHH--hhhhh-hcCCCCHHHHHHHHHHHHhCC
Q psy12373 112 DYCNKHG-DFGAAIHFLILSKCYQDAFNLSQQHKKLHEF--GKFLL-EEDEPNPVELKRLAIHFEEDK 175 (198)
Q Consensus 112 ~~~~~~g-~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~--~~~~~-l~~~~~~~~~~~~A~~~e~~g 175 (198)
..+.+.+ .++.-++.+..-|++.+|++.+++.+..+.+ ...+. ...+.++..+..+=++|+..+
T Consensus 83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4567778 8899999999999999999999885433211 11111 245678899999999998755
No 215
>KOG1174|consensus
Probab=88.24 E-value=18 Score=31.99 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHH-------
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRI------- 110 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~------- 110 (198)
+..=|+.+-..|..++|+-+|..|.. |+..|..|+ -.|.+.+|.-+++.. + +......+
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL-A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL-AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc
Confidence 33447778888888999888877763 567888888 678888888777642 1 12222223
Q ss_pred -------HHHHHh-----cCCHHHHH----HHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373 111 -------ADYCNK-----HGDFGAAI----HFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED 174 (198)
Q Consensus 111 -------A~~~~~-----~g~~~~Av----~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~ 174 (198)
|+.|.. .-+|..|| ++..+-|.+.+++.|...+ |..-++..++..++++|-..
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-----------L~~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH-----------LIIFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH-----------HhhccccHHHHHHHHHHHHh
Confidence 222211 12333332 3444555555555555444 34456678899999999888
Q ss_pred CChhhH
Q psy12373 175 KGVLTS 180 (198)
Q Consensus 175 g~~~~A 180 (198)
+.+.+|
T Consensus 485 Ne~Q~a 490 (564)
T KOG1174|consen 485 NEPQKA 490 (564)
T ss_pred hhHHHH
Confidence 888877
No 216
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.18 E-value=11 Score=29.66 Aligned_cols=58 Identities=28% Similarity=0.283 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 103 CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+++....+|.||. +-|.++++.+|.++=. +.. -+...+|+++..+|..|.+.|+++.|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~------l~~-------------~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALE------LSN-------------PDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHH------hcC-------------CCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4556667888887 5567777777765321 110 02255799999999999999999988
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.10 E-value=6.1 Score=29.31 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=66.3
Q ss_pred HHcCCHHHHHHHHHH---ccCHHHH----HhhhhccC---ChHHHHHHHHHHH--HcCCHHHHHHHHHHhcCHHH----H
Q psy12373 17 ESAGNYEKAATCYIQ---LKNWTKI----GQLLPHIK---SATTFIQYAKAKE--AMGSYRESVGAYERAEDYDN----V 80 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~---~~~~~~a----~~l~~~~~---~~~l~~~~A~~~e--~~g~~~~A~~~Y~ka~~~~~----a 80 (198)
.-.|..++-+++..+ +.+...+ ..+++.++ .-..+..+|+.|. .-|+...-+.+|.+.|-... |
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~A 92 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLA 92 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence 344777777776653 3333332 33333333 2233344555544 44778899999999997654 4
Q ss_pred HHHHhhccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 81 VRVDLDHLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+...+ ..|.-|..-++.+.. ++|.....+|..|.+.|+..++-++..+|
T Consensus 93 Ld~lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 93 LDILV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 55555 568888888887764 46777778999999999999988887664
No 218
>KOG4340|consensus
Probab=87.71 E-value=7.6 Score=32.80 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=57.0
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhhcc----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHH
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLPHI----K-SATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRV 83 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l 83 (198)
+.|+++..+--.++-..|..+.+++... + +..-+..+|--+....+|..|.+||++.+.. -.|-.+
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 4466666666667777888888887532 2 5566777888888888999999999998742 122233
Q ss_pred HhhccCCHHHHHHHHHhcCC
Q psy12373 84 DLDHLNDIRHAVDIVKAKKC 103 (198)
Q Consensus 84 ~~~~~~~~~~a~~l~~~~~~ 103 (198)
| +.+.+-+|.+++....+
T Consensus 89 Y--~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 89 Y--KACIYADALRVAFLLLD 106 (459)
T ss_pred H--HhcccHHHHHHHHHhcC
Confidence 3 24566777777776554
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.58 E-value=1.5 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
...+|..+...|++++|++.|.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 456788888999999999988775
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.44 E-value=1 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+.++|..+...|++++|++.|.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4567888888888999998888775
No 221
>KOG2300|consensus
Probab=87.33 E-value=11 Score=33.72 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=72.7
Q ss_pred HcCCHHHHHHHHHHccCHHHH--HhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH-----------HH
Q psy12373 18 SAGNYEKAATCYIQLKNWTKI--GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR-----------VD 84 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a--~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~-----------l~ 84 (198)
-.|++.+|++-..+..+|... .+++-+-..+.++.-+|.++.+.|.++.|...|..|-...+-++ .|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 357788888777777777653 22233445678888999999999999999999998865433222 34
Q ss_pred hhccCCHHHHHHHHHhcCCH------HH-----H-HHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373 85 LDHLNDIRHAVDIVKAKKCT------EG-----A-KRIADYCNKHGDFGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~~~~~------~~-----~-~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~ 138 (198)
+ +.++.++..++....+.+ .. + +-.|-+.-.++++.+|-.+.++-=+-..|..
T Consensus 415 L-~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 415 L-RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred H-HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 4 455656555555432211 11 1 1123333456777777666665544444433
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.27 E-value=7.4 Score=30.23 Aligned_cols=132 Identities=11% Similarity=-0.020 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHH----hcCCHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVK----AKKCTEGAKRIA 111 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~----~~~~~~~~~~~A 111 (198)
++..++..|..+-..|+|.+|++.|.+..+- -..+..+. ..|+++.|..... .+|..... ..|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~-~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKA-DYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTH-HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcch-hhH
Confidence 4566778888899999999999999887531 23344444 5677777765443 34432211 112
Q ss_pred HHHHhcCCHHHHHHH---HHHcCChHHHHHHHH----HcchhhHHhhhh-hhc--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 112 DYCNKHGDFGAAIHF---LILSKCYQDAFNLSQ----QHKKLHEFGKFL-LEE--DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 112 ~~~~~~g~~~~Av~~---y~~ag~~~~A~~la~----~~~~~~~~~~~~-~l~--~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++...-.+...-.. ....+...+|+.... ..+......++- .|. .....+--+.+|++|.+.|.|.-|
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 222111111122222 344444555544432 233322211111 000 112233456688999999998877
No 223
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.14 E-value=15 Score=29.98 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373 100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~ 138 (198)
..++|+....+|+.|-+.|++..|..+|+.+++.+....
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 345677888899999999999999999999988766654
No 224
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.86 E-value=16 Score=29.90 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=68.8
Q ss_pred HHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHHHhhccCCHHH
Q psy12373 28 CYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRVDLDHLNDIRH 93 (198)
Q Consensus 28 ~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l~~~~~~~~~~ 93 (198)
.-+..|+|..|...+.+ .++..++.-+|-.+...|++++|-..|.++-+. .-++-.++ .|+.++
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~ 186 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL--RGDLED 186 (257)
T ss_pred HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHH
Confidence 33455666665555542 348889999999999999999999999988654 22344444 489999
Q ss_pred HHHHHHh---cC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 94 AVDIVKA---KK--CTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 94 a~~l~~~---~~--~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
|..+... .+ ++.+...+|......|+++.|-..=..
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9888763 22 334455788888889999887654433
No 225
>KOG1915|consensus
Probab=86.71 E-value=16 Score=32.73 Aligned_cols=93 Identities=18% Similarity=0.358 Sum_probs=71.9
Q ss_pred HHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHH----hcCC
Q psy12373 35 WTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVK----AKKC 103 (198)
Q Consensus 35 ~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~----~~~~ 103 (198)
|++|+.++..++ .+.+.+--+-|..|+...|-+.|++=-+ |.+-|+.=+ +-+.|+.|-.|=. -||.
T Consensus 130 ~dRAvt~lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 130 WDRAVTILPRVD--QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHhcchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc
Confidence 666776666665 7888888888999999999999998654 466677777 6688999876644 4777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
...-..+|++=++.|.+.-|-..|.+|
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 777778899988888887777777665
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.50 E-value=6.9 Score=29.03 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+|.+|.+.+.+ |+++.|++.+..+..---- ..-.+....+++..+-..|++++|+..|.+- |++.=
T Consensus 13 ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~-----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF------irLhP 78 (142)
T PF13512_consen 13 LYQEAQEALQK-GNYEEAIKQLEALDTRYPF-----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF------IRLHP 78 (142)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCC
Confidence 45555555444 6677776666433110000 0014566677888888888888888777765 66555
No 227
>KOG4162|consensus
Probab=86.39 E-value=30 Score=32.65 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=31.7
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-------------------------HhcCChhhHHhhhhh
Q psy12373 150 GKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-------------------------FRVSQQSRAMPCSSG 195 (198)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-------------------------~~ag~~~~Al~l~~~ 195 (198)
.+.+.+....++....-+|-.|-.++++..| ..=|+.++|++.|.+
T Consensus 502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 3443455556677777788888888888888 334567788877754
No 228
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.39 E-value=13 Score=28.42 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHccCHHHHHhhhhc--cC-ChHHHHHHHHHH-HHcCCHHHHHHHHHHhc-CHHHHHHHHhhccCCHHHHH
Q psy12373 21 NYEKAATCYIQLKNWTKIGQLLPH--IK-SATTFIQYAKAK-EAMGSYRESVGAYERAE-DYDNVVRVDLDHLNDIRHAV 95 (198)
Q Consensus 21 ~~~~Ai~~y~~~~~~~~a~~l~~~--~~-~~~l~~~~A~~~-e~~g~~~~A~~~Y~ka~-~~~~av~l~~~~~~~~~~a~ 95 (198)
-+...|++..+.|.+..+..++.. ++ ++++...+-.+- ....-+.-|.+++.+.+ .++..|++++ ..|+.-+|.
T Consensus 31 L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL-~~g~vl~AL 109 (167)
T PF07035_consen 31 LYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLL-SKGQVLEAL 109 (167)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHH-hCCCHHHHH
Confidence 356778899999999999888863 23 444443332110 01123778899999999 8999999999 789999999
Q ss_pred HHHHhc
Q psy12373 96 DIVKAK 101 (198)
Q Consensus 96 ~l~~~~ 101 (198)
+++++.
T Consensus 110 r~ar~~ 115 (167)
T PF07035_consen 110 RYARQY 115 (167)
T ss_pred HHHHHc
Confidence 999874
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.24 E-value=7.6 Score=31.83 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+...+++++.+-.+|+++.|...|.+.-+ .+++ .+..|+.+++++....+.|+.++|
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---------~~P~-----------s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVK---------DYPK-----------SPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHH---------hCCC-----------CCCChHHHHHHHHHHHHhcCHHHH
Confidence 56788999999999999999888865432 2322 255799999999999999999888
No 230
>KOG3081|consensus
Probab=86.18 E-value=15 Score=30.33 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.+|.+..-.|......|+|++|
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHH
Confidence 56788888888888888888888
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.13 E-value=1.9 Score=22.80 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
...+|..+...|++++|++.|.++-.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44678889999999999999877643
No 232
>KOG2047|consensus
Probab=85.93 E-value=8.6 Score=35.60 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=64.9
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---H-----------HHHHHHHhhccCCHHHH---HHHHHhcCCHHH
Q psy12373 44 HIKSATTFIQYAKAKEAMGSYRESVGAYERAED---Y-----------DNVVRVDLDHLNDIRHA---VDIVKAKKCTEG 106 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~-----------~~av~l~~~~~~~~~~a---~~l~~~~~~~~~ 106 (198)
++-+|.+...+|-.+|...-++++-+.|+|+=. | .+.|.=|. .-.++.| ++-|...-+|..
T Consensus 507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--g~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--GTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHH
Confidence 456899999999999999999999999999753 1 22222221 1233333 333333222332
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhh
Q psy12373 107 ----AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLH 147 (198)
Q Consensus 107 ----~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~ 147 (198)
...+|+.=++-|--..|+..|.+| ..++..+.++.++.
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyera---t~~v~~a~~l~myn 626 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERA---TSAVKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhcCCHHHHHHHHH
Confidence 335788778889999999999995 34555555555544
No 233
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=85.78 E-value=4.5 Score=36.49 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 89 NDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 89 ~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
|++++|....++ .++......+|+.++..|++++|++.|.+|=+
T Consensus 434 g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566665554432 23444455789999999999999999988754
No 234
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.73 E-value=1.6 Score=21.46 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..+..+|..+...|+++.|+..|.++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667888999999999999998776
No 235
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=85.07 E-value=5.5 Score=27.99 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 81 VRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
+++|+ .. +...+..+++.- +.=....+...+.+.+.+.+-+.||..-|.+.+|+++..+...
T Consensus 6 lk~Yl-~~-~~~~l~~llr~~-N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 6 LKCYL-ET-NPSLLGPLLRLP-NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHH-Hh-CHHHHHHHHccC-CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666 33 556566665532 2222334567889999999999999999999999999876654
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.80 E-value=3.7 Score=36.23 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh---HHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA---TTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~---~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
+..|...|+++.|+.+|.++ .++ ..++. ..++.+|-.+...|++++|+++|.++=.
T Consensus 82 G~AL~~lGryeEAIa~f~rA------LeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETA------LEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHH------Hhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555668888888887443 333 22233 3589999999999999999999999843
No 237
>KOG3785|consensus
Probab=84.68 E-value=12 Score=32.40 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAKKC 103 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~~~ 103 (198)
..+-.|+|.-.-..|+|++|.+.|.-.-.- ....-++. .+|++.+|..++.+.++
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC
Confidence 456677888788888888888888766432 12222222 56788888777766554
No 238
>KOG2034|consensus
Probab=84.60 E-value=26 Score=33.53 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc---CCCCHHHHHHHHHHHHh-CCChhhH
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE---DEPNPVELKRLAIHFEE-DKGVLTS 180 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~e~-~g~~~~A 180 (198)
.+.|.+-+.-...|.+|+..+.|.+|+++|.+.+ .+-.....+.. .+....+-+++|+|+-. ..+..+|
T Consensus 668 lRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d-~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~ 740 (911)
T KOG2034|consen 668 LRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD-IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKA 740 (911)
T ss_pred HHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC-HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 4456666777889999999999999999999988 55444443221 12223577889997754 3444555
No 239
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.43 E-value=7 Score=26.01 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..++-.++| .+.+.++|+.++.+. .+-....+ --.++..+.+.++..|.|++.+++=.+-
T Consensus 9 ~ie~GlkLY-~~~~~~~Al~~W~~a------L~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLY-HQNETQQALQKWRKA------LEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHh-ccchHHHHHHHHHHH------HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788 567778888876433 22221111 1234556678888888888887765554
No 240
>PF12854 PPR_1: PPR repeat
Probab=84.32 E-value=2.1 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~ 141 (198)
|...|..|+++|+.++|+++..
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3456777777777777777653
No 241
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.25 E-value=34 Score=31.83 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=67.9
Q ss_pred HHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------------------
Q psy12373 26 ATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY----------------------- 77 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----------------------- 77 (198)
+++-...++|..+...+..++ ...-.+|+|+.++..|+.++|..+|.++-..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~ 398 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKA 398 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCC
Confidence 455557888988766555433 5678889999999999999999999887421
Q ss_pred ------------HHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373 78 ------------DNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY 133 (198)
Q Consensus 78 ------------~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~ 133 (198)
..+++.+. .+|+...|...-. ...++.....+|.+-.+.|.++.+|..-.+++.|
T Consensus 399 ~~~~~~~~~~~~~~ra~~L~-~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~ 468 (644)
T PRK11619 399 PKPDSALTQGPEMARVRELM-YWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLW 468 (644)
T ss_pred CchhhhhccChHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhH
Confidence 11222333 3445444433221 1234445556677777777777777777666654
No 242
>PF13934 ELYS: Nuclear pore complex assembly
Probab=84.03 E-value=12 Score=29.95 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhc---C-HHHHHHHHhhccCCHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAE---D-YDNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~---~-~~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
....-|=|+-+.+++++|+++..... + ..+.|+..+ ..|+.+-|.++.+.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~-~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALL-RRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHH-HCCChhHHHHHHHh
Confidence 33344666666666666666665542 1 346666666 44666666666654
No 243
>KOG0687|consensus
Probab=83.45 E-value=10 Score=32.24 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHH----HHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYA----KAKEAMGSYRESVGAYERAEDYDNVV 81 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A----~~~e~~g~~~~A~~~Y~ka~~~~~av 81 (198)
+++|.+-||-+.|.+.+.+. +++.+.+.-+++---....+| .+.--....+.|-.+++++|||++==
T Consensus 111 aeYycqigDkena~~~~~~t--~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRKT--YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHhccHHHHHHHHHHH--HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 34555555555555555432 333333322333222222333 33334446778888888888886543
No 244
>KOG0495|consensus
Probab=83.40 E-value=24 Score=33.00 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
..+|..-+++.-|..|+...|-..+.++. -|..+|+|=+ +.|+.+.|..++.
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lma 777 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMA 777 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHH
Confidence 56788888999999999999999998875 3788899999 8899988876653
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.16 E-value=12 Score=30.65 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=44.7
Q ss_pred HcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHcCCh
Q psy12373 60 AMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFLILSKCY 133 (198)
Q Consensus 60 ~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y~~ag~~ 133 (198)
..|+++.|..+|.|+.+... ...++.+..+++. .+.++.-+.+.+ +++.|+..+.+|-++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~--------~~~~~~~~~La~~------~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN--------SLDPDMAEELARV------CYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh--------cCCcHHHHHHHHH------HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 57899999999999855443 2356666666654 667888888888 899999888776554
No 246
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=8.5 Score=31.99 Aligned_cols=75 Identities=17% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCC-----------hHHHHHHHHHcch--hhHHhhhh--hhc-CCCCHHHHHHH
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILSKC-----------YQDAFNLSQQHKK--LHEFGKFL--LEE-DEPNPVELKRL 167 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~-----------~~~A~~la~~~~~--~~~~~~~~--~l~-~~~~~~~~~~~ 167 (198)
.+.=..+|+.+...|++..|+..|.+|.+ +-+++ ..+.+. ......++ .|. ++.++.....+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL--~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL--YYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 33445789999999999999999999877 22222 222222 21222222 144 46678899999
Q ss_pred HHHHHhCCChhhH
Q psy12373 168 AIHFEEDKGVLTS 180 (198)
Q Consensus 168 A~~~e~~g~~~~A 180 (198)
|.-+.++|+|.+|
T Consensus 234 A~~afe~g~~~~A 246 (287)
T COG4235 234 AFAAFEQGDYAEA 246 (287)
T ss_pred HHHHHHcccHHHH
Confidence 9999999999998
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=83.02 E-value=15 Score=26.48 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=13.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHc
Q psy12373 122 AAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 122 ~Av~~y~~ag~~~~A~~la~~~ 143 (198)
..+..|...|++.+|++.+.+.
T Consensus 101 ~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 101 LLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 4566666666666666666544
No 248
>KOG1156|consensus
Probab=82.86 E-value=29 Score=32.11 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCH-HHH-------HHHHhhccCCHHHHHHHHHh---cCCHHHHH--HHHHHHHhcCC
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDY-DNV-------VRVDLDHLNDIRHAVDIVKA---KKCTEGAK--RIADYCNKHGD 119 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~-~~a-------v~l~~~~~~~~~~a~~l~~~---~~~~~~~~--~~A~~~~~~g~ 119 (198)
.+++++-..|+++.|.++--.|=+. -.. .||++ +.|.++.|.....+ ...++.++ .+|+|+...+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k-H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK-HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 4589999999999998876665442 122 27778 99999999887754 34455554 47777777666
Q ss_pred HHHHHHHHH
Q psy12373 120 FGAAIHFLI 128 (198)
Q Consensus 120 ~~~Av~~y~ 128 (198)
.++|.+...
T Consensus 455 i~eA~~~~s 463 (700)
T KOG1156|consen 455 IEEAEEVLS 463 (700)
T ss_pred cHHHHHHHH
Confidence 666655433
No 249
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.79 E-value=41 Score=31.26 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=90.1
Q ss_pred CHHHHHhhhhc--cC----ChHHHHHHHHH-HHH--cCCHHHHHHHHHHhcCHHHHHHHHhhc---cCCHHHHHHHHHhc
Q psy12373 34 NWTKIGQLLPH--IK----SATTFIQYAKA-KEA--MGSYRESVGAYERAEDYDNVVRVDLDH---LNDIRHAVDIVKAK 101 (198)
Q Consensus 34 ~~~~a~~l~~~--~~----~~~l~~~~A~~-~e~--~g~~~~A~~~Y~ka~~~~~av~l~~~~---~~~~~~a~~l~~~~ 101 (198)
.|..+.++.-- +. -+.....+|+. |.+ ..+..++.=+|...|.-.-...++. . ...-.+..+.....
T Consensus 367 ~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k-~a~~~~~~~k~~~Fl~nd 445 (631)
T PF12234_consen 367 SWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWK-MASWHKEQQKMAKFLSND 445 (631)
T ss_pred CHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHH-hhhcccccHHHHHHHhhc
Confidence 57776655421 12 23455566763 333 4778888888888887654444444 1 11212233333221
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc-chhhHHhhhhhh-cCCCCHHHHHHHHHHHH---
Q psy12373 102 KC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH-KKLHEFGKFLLE-EDEPNPVELKRLAIHFE--- 172 (198)
Q Consensus 102 ~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~e--- 172 (198)
-+ ..++..=|-.+.++.+|+-|.-||..||+..+|++++.+. +..+..--++++ ..+..|....-+-++..
T Consensus 446 F~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a 525 (631)
T PF12234_consen 446 FTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEA 525 (631)
T ss_pred CCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccc
Confidence 11 1122223555778899999999999999999999999765 444333333233 23334433222222221
Q ss_pred -hCC-ChhhH---HhcCChhhHHhhhhh
Q psy12373 173 -EDK-GVLTS---FRVSQQSRAMPCSSG 195 (198)
Q Consensus 173 -~~g-~~~~A---~~ag~~~~Al~l~~~ 195 (198)
..| .|... -.-|+++.|++.+..
T Consensus 526 ~~~~d~wl~s~~~W~L~~~~~ai~~Li~ 553 (631)
T PF12234_consen 526 IKEGDRWLASWAFWMLGDYDEAIRALIS 553 (631)
T ss_pred cccCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence 122 33333 778899999887764
No 250
>KOG2047|consensus
Probab=82.43 E-value=10 Score=35.11 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=74.0
Q ss_pred HHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH------HHHHHHHhh----------ccCCHHHHHHHHHhc
Q psy12373 38 IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY------DNVVRVDLD----------HLNDIRHAVDIVKAK 101 (198)
Q Consensus 38 a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------~~av~l~~~----------~~~~~~~a~~l~~~~ 101 (198)
+...+.-...+.++..+|+.=|..|.-..|+..|.++-.- ...-+||+. +.+=+++|+.. .
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L 652 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L 652 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C
Confidence 4444444446788999999999999999999999998632 233344441 11223444443 3
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHcCC----------hHHHHHHHHHcchhhHHhhhhhh
Q psy12373 102 KCTEG---AKRIADYCNKHGDFGAAIHFLILSKC----------YQDAFNLSQQHKKLHEFGKFLLE 155 (198)
Q Consensus 102 ~~~~~---~~~~A~~~~~~g~~~~Av~~y~~ag~----------~~~A~~la~~~~~~~~~~~~~~l 155 (198)
|+..+ +...|..=.+.|.++.|-..|.-+-+ |+.=-..=.+||+.+.+.+++.+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44333 33445555678999999999987766 32222333578888888888754
No 251
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.37 E-value=37 Score=32.55 Aligned_cols=39 Identities=13% Similarity=-0.101 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.++++..-+.+|...|...+||++=.+|||+..|..+.-
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle 384 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLE 384 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHH
Confidence 478898999999999999999999999999999999887
No 252
>KOG0624|consensus
Probab=82.35 E-value=32 Score=29.75 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 102 KCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 102 ~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
.+++.++.+++.+-..||.+.++.
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHH
Confidence 456667777777777777665544
No 253
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.93 E-value=3.8 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..-|.-++..|++++|+++|..+
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345688899999999999999998
No 254
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.80 E-value=3.3 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
...+|..+...|++++|..++.++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 346788888888888888887665
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.77 E-value=15 Score=28.85 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcC------H-----HHHHHHHhhccCCHHHHHHHHHhcCCH--HH--HHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAED------Y-----DNVVRVDLDHLNDIRHAVDIVKAKKCT--EG--AKRIADYCNK 116 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~------~-----~~av~l~~~~~~~~~~a~~l~~~~~~~--~~--~~~~A~~~~~ 116 (198)
..+|+.+...|+++.|+.-...+-+ + .+.-|+.+ ..|..|+|..+...-..+ .. ...-+..|..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 4678899999999999988774432 1 34456667 789999999887653332 32 3345788999
Q ss_pred cCCHHHHHHHHHHcCCh
Q psy12373 117 HGDFGAAIHFLILSKCY 133 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~ 133 (198)
.|+-++|...|.+|-.-
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 99999999988877553
No 256
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.85 E-value=12 Score=30.19 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
++...+..|..+...|+|++|++.|.+.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~ 59 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALD 59 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56667788999999999999999998874
No 257
>KOG1524|consensus
Probab=80.76 E-value=14 Score=33.50 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC 103 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~ 103 (198)
.+.|...--.|...+|.-..+++|....||.+.+ ++-+|..|.+++.++..
T Consensus 648 ~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni-~m~nW~RALEl~~K~K~ 698 (737)
T KOG1524|consen 648 EQMAENSLMLGRMLEAETILLHGGLIEQAVGLNI-RMHNWRRALELSQKHKE 698 (737)
T ss_pred HHHHHHHHHhccchhhhHHHHhcchHHHhhhhhh-hhhhHHHHHHHHHhHHH
Confidence 4677778888999999999999999999999999 89999999999987753
No 258
>KOG3060|consensus
Probab=80.67 E-value=8.1 Score=31.71 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=13.7
Q ss_pred HHHHHHcCCHHHHHHHHHHc
Q psy12373 13 WTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~ 32 (198)
+-+++..|+++.|++.|...
T Consensus 93 am~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred HHHHHHhhchhhHHHHHHHH
Confidence 45667777777777777643
No 259
>KOG1128|consensus
Probab=80.27 E-value=3 Score=38.73 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC--CHH--HHHHHHHHHHhcCCHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK--CTE--GAKRIADYCNKHGDFGA 122 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~--~~~--~~~~~A~~~~~~g~~~~ 122 (198)
-+.+-..+|..+-+-|-..+|+..|+|-+.|...|-+|+ .+|+-.+|..|-++.- +++ ..+.++......--+++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~-~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYL-LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHH-HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 456777889999999999999999999999999999999 9999999988876421 222 22334444333333455
Q ss_pred HHHH
Q psy12373 123 AIHF 126 (198)
Q Consensus 123 Av~~ 126 (198)
|.++
T Consensus 476 awEl 479 (777)
T KOG1128|consen 476 AWEL 479 (777)
T ss_pred HHHH
Confidence 5554
No 260
>KOG1130|consensus
Probab=79.68 E-value=12 Score=33.09 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...++-+|+.+.--.++..||.++.+- +.|.. .+++ ..........+++.|-..|..++|+.|-
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rH------LaIAq-eL~D---------riGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRH------LAIAQ-ELED---------RIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHH-HHHH---------hhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344455555555555566666655554 33333 2221 1122334556788888888888887776
Q ss_pred HHc
Q psy12373 128 ILS 130 (198)
Q Consensus 128 ~~a 130 (198)
.++
T Consensus 339 e~h 341 (639)
T KOG1130|consen 339 ELH 341 (639)
T ss_pred HHH
Confidence 554
No 261
>KOG1941|consensus
Probab=79.47 E-value=42 Score=29.27 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHHHHhhhhccCChH----HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 35 WTKIGQLLPHIKSAT----TFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 35 ~~~a~~l~~~~~~~~----l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
|++|.+++..++|+. ++.-++..|-...+++.|.-+-.+|
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 445566665555443 3344566666666666666555554
No 262
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.39 E-value=33 Score=27.99 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 157 DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++|+++..+|..|-+.|+|.+|
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHH
Confidence 568899999999999999999999
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.04 E-value=3.4 Score=22.42 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++..+..+|..|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 56899999999999999998877
No 264
>KOG0548|consensus
Probab=78.89 E-value=20 Score=32.27 Aligned_cols=122 Identities=19% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc----------------cC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH----------------IK--SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~----------------~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
-+..|.+.|+++.+|..|.++-.-.+...++.+ ++ ........|.-+-+.|+|..|+.+|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344666668888888888765333322222221 11 123334558888899999999999998
Q ss_pred hcC--------HHHHHHHHhhccCCHHHHHHHHHh---c-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373 74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA---K-KCT-EGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134 (198)
Q Consensus 74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~---~-~~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~ 134 (198)
+=. |-+-.-+++ .++.+..|..=|.. . |+. .....=|..+....+|++|++.|.++-.++
T Consensus 384 AIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 742 223333455 57777777664442 2 111 112222444556677888888888777654
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.87 E-value=13 Score=27.65 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=35.0
Q ss_pred HcCCHHHHHHHHHHccCH-----------------HHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 18 SAGNYEKAATCYIQLKNW-----------------TKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~-----------------~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.||+..+-|.||.+.+.. +++.++...+ .+|+++..+|..+...|+-.+|-++..+|
T Consensus 68 ~C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp G-S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 456666666666655443 3344444332 37889999999999999999988877665
No 266
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.50 E-value=4.8 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
....+|..+-..|++++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777776654
No 267
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.81 E-value=10 Score=25.65 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred HHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 17 ESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.+.||+..|++-..+.=++..-..-... ..-.-.+..+|......|++++|++.+..+ |++.. ..++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA------i~~Ar-e~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA------IRLAR-ENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHH-HHCC
Confidence 3567888887777665444331111000 011223445778888888888888777666 66666 4344
No 268
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.41 E-value=19 Score=24.23 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 148 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~ 148 (198)
...+|......|++++|+..+ .+|++++++.+...-
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l------~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQAL------EEAIRLARENGDRRC 79 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHHCCHHH
Confidence 345677777889999998875 578888888876533
No 269
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.40 E-value=38 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV 95 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~ 95 (198)
.+...+|+-+...|+|+.|.++|..+ ...+. .-|+|.=..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~------~~~yr-~egW~~l~~ 218 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPA------ASSYR-REGWWSLLT 218 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHH-hCCcHHHHH
Confidence 45668999999999999999999998 77777 557766333
No 270
>KOG3024|consensus
Probab=76.23 E-value=23 Score=29.55 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=70.5
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhh-----------ccCChHHHHHHHHHHHHcCC------HHHHHHHHHHhcC
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLP-----------HIKSATTFIQYAKAKEAMGS------YRESVGAYERAED 76 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-----------~~~~~~l~~~~A~~~e~~g~------~~~A~~~Y~ka~~ 76 (198)
++|+.++.+.-.+--|.+++.++.+..++. ..+.+++...+...++..-. .....+..-.++.
T Consensus 21 d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~~~ 100 (312)
T KOG3024|consen 21 DYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEADP 100 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCC
Confidence 556666655555556666666666555543 23355666666666655100 0111111111111
Q ss_pred ----HHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHH
Q psy12373 77 ----YDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNL 139 (198)
Q Consensus 77 ----~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~l 139 (198)
-...|+..+ +|..... ..+.++|.....+|.+|-+.+++.+|-.+|..+.+.+..-.+
T Consensus 101 ~eper~~~v~rai----kWS~~~~-~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ 162 (312)
T KOG3024|consen 101 SEPERKTFVRRAI----KWSKEFG-EGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYM 162 (312)
T ss_pred CccHHHHHHHHHH----HHHhhcC-CCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHH
Confidence 122233333 4654432 223467888889999999999999999999999998777553
No 271
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=76.04 E-value=16 Score=33.02 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=31.0
Q ss_pred HccCHHHHHhhhhc---c-CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 31 QLKNWTKIGQLLPH---I-KSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 31 ~~~~~~~a~~l~~~---~-~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..|+++.|.+.+++ + ++...+..+|+.++..|++++|++.|.+|
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677766555542 1 24556667788888888888888888887
No 272
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.03 E-value=24 Score=31.44 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCChhhH------------HhcCChhhHHhhhhhcCC
Q psy12373 160 NPVELKRLAIHFEEDKGVLTS------------FRVSQQSRAMPCSSGHHP 198 (198)
Q Consensus 160 ~~~~~~~~A~~~e~~g~~~~A------------~~ag~~~~Al~l~~~~~~ 198 (198)
+|.++.-++-.+..+.+|.+| ..--+..+|+-+|+.|-|
T Consensus 494 S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 494 SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999 566678899999999976
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=75.56 E-value=23 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
.+..-|+.....|+.++|++.|.++-+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 334558999999999999999998764
No 274
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.56 E-value=59 Score=29.94 Aligned_cols=81 Identities=7% Similarity=0.028 Sum_probs=46.9
Q ss_pred HHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHH
Q psy12373 59 EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH-AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF 137 (198)
Q Consensus 59 e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~-a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~ 137 (198)
.+.=+.+.|-..|...|+.-.-+.-++ ....|.. .++++.++|+.... .-||+....+|..+|..
T Consensus 118 ~~~FD~~k~D~ift~~~~~p~WL~~mi-~~~~WR~liy~Lae~~p~~l~L-------------~faik~IsdaG~~~Ei~ 183 (584)
T PF04858_consen 118 KKRFDPKKADTIFTEEGSTPAWLDEMI-EHPRWRSLIYELAERHPDCLFL-------------NFAIKLISDAGYQHEIT 183 (584)
T ss_pred HHhcChHHHHHHHhcCCCCChHHHHHh-cCcHHHHHHHHHHHHCCCCHHH-------------HHHHHHHHHcchHHHHH
Confidence 344455666667766677666677777 5567776 45677666653322 24566666666666665
Q ss_pred HHHHHcchhhHHhhhh
Q psy12373 138 NLSQQHKKLHEFGKFL 153 (198)
Q Consensus 138 ~la~~~~~~~~~~~~~ 153 (198)
.+.--...++.|..++
T Consensus 184 s~~taa~~~~VF~~vl 199 (584)
T PF04858_consen 184 SVSTAAQQFEVFSRVL 199 (584)
T ss_pred hHHHHHHhHHHHHHHH
Confidence 5554444444444443
No 275
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=74.97 E-value=6.4 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~ 141 (198)
|...+..|.++|+++.|+++..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~ 25 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFD 25 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 5577888999999999888764
No 276
>KOG4642|consensus
Probab=74.57 E-value=11 Score=30.63 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHH
Q psy12373 55 AKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFG 121 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~ 121 (198)
|+-+-....|..||.+|.++= -|.+=+-++. ++++|+.+..=++.. ++....+.++.++..+..++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 444444556888888888874 2345555666 678888776555431 12334557889999999999
Q ss_pred HHHHHHHHcC------------ChHHHHHHHHHc
Q psy12373 122 AAIHFLILSK------------CYQDAFNLSQQH 143 (198)
Q Consensus 122 ~Av~~y~~ag------------~~~~A~~la~~~ 143 (198)
.||..+.+|- .+.++++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 9999998882 256666666543
No 277
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=73.25 E-value=5.7 Score=20.10 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q psy12373 121 GAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 121 ~~Av~~y~~ag~~~~A~~la~~ 142 (198)
...+..|.+.|++++|.++..+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHH
Confidence 3567788888888888777643
No 278
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=73.24 E-value=29 Score=24.31 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 25 AATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
..++|... +...+..+++.. +.--....-..+++.|.|.+=+.+|..-|...+|+++.. .+.+
T Consensus 5 Llk~Yl~~-~~~~l~~llr~~-N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~-~l~~ 67 (108)
T PF10366_consen 5 LLKCYLET-NPSLLGPLLRLP-NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLK-KLAD 67 (108)
T ss_pred HHHHHHHh-CHHHHHHHHccC-CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHH-HHhc
Confidence 35677777 666666666543 222333556678899999999999999999999999988 4443
No 279
>KOG4121|consensus
Probab=73.19 E-value=78 Score=31.04 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ 53 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~ 53 (198)
..-++......+.|.++.||++-.+=.+|+.++.+++.+++++-+..
T Consensus 773 ~~Rrdwlq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcdqld~kdrLq~ 819 (1128)
T KOG4121|consen 773 DNRRDWLQVLCKVGQYEQAIQIAEKYKDFQSLVQLCDQLDQKDRLQD 819 (1128)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhCchhHHHH
Confidence 34567788889999999999999999999999999998886663333
No 280
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=72.93 E-value=45 Score=26.40 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc------CH---HHHHHHHhhccCCHHHHHHHHHh----c---CCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE------DY---DNVVRVDLDHLNDIRHAVDIVKA----K---KCTEGAKRI 110 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~------~~---~~av~l~~~~~~~~~~a~~l~~~----~---~~~~~~~~~ 110 (198)
+..-.+.+|..+-..|++.+|..+|.++- |. ....+..+ ..+++-.+...... + .+|+....+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33445678999999999999999999863 32 22233334 34666666554432 2 246667778
Q ss_pred HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|+.+...|.+..|.. ||+.+..+ -..|+.....+.++.++|+..+|
T Consensus 167 aR~laa~g~~a~Aes----------afe~a~~~--------------ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 167 ARTLAAQGKYADAES----------AFEVAISY--------------YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhcCCchhHHH----------HHHHHHHh--------------CCCHHHHHHHHHHHHHhcchhHH
Confidence 888888888776533 33333222 22445555666666666655555
No 281
>KOG0292|consensus
Probab=72.83 E-value=9.6 Score=36.52 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=73.9
Q ss_pred ccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHH
Q psy12373 32 LKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR 109 (198)
Q Consensus 32 ~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~ 109 (198)
.++|+.+..|++... ... +=.++++.|-.+-|..+- .|..-=..+++ ..|+++.|++.|++..+++.-..
T Consensus 606 ~k~ydeVl~lI~ns~LvGqa----iIaYLqKkgypeiAL~FV---kD~~tRF~LaL-e~gnle~ale~akkldd~d~w~r 677 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQA----IIAYLQKKGYPEIALHFV---KDERTRFELAL-ECGNLEVALEAAKKLDDKDVWER 677 (1202)
T ss_pred hhhhHHHHHHHHhcCcccHH----HHHHHHhcCCcceeeeee---cCcchheeeeh-hcCCHHHHHHHHHhcCcHHHHHH
Confidence 356666666665433 111 123556666665555432 24444567788 77999999999999998888777
Q ss_pred HHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 110 IADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 110 ~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
++.--..+|..+=|...|.+-..|++-.=|+.=.|..+.+.+++
T Consensus 678 Lge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 678 LGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred HHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHH
Confidence 77777777877777778888777777655554444444444443
No 282
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.80 E-value=9.9 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 110 IADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 110 ~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
-|--+.+.|++++|+++|..|-.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567788999999999977654
No 283
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=72.19 E-value=8 Score=19.89 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCChHHHHHHHH
Q psy12373 121 GAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 121 ~~Av~~y~~ag~~~~A~~la~ 141 (198)
...+..|.+.|++++|+++..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~ 24 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFK 24 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 456777888888888877764
No 284
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.19 E-value=46 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q psy12373 102 KCTEGAKRIADYCNKHGDFGAA 123 (198)
Q Consensus 102 ~~~~~~~~~A~~~~~~g~~~~A 123 (198)
.+++....+|..+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 4678888899999998888876
No 285
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.97 E-value=7.2 Score=28.13 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHc---CCHHHHHHHHHHccCH-HHHHhhhh-----cc--CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESA---GNYEKAATCYIQLKNW-TKIGQLLP-----HI--KSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~---g~~~~Ai~~y~~~~~~-~~a~~l~~-----~~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..++.+.+.|... .+-.+-++++++--++ .....+.. .+ ..+.++..||..+|..|++++|.+.|.++
T Consensus 47 ~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 47 ELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455666666433 3445566666533221 12222221 22 26788889999999999999999999875
No 286
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=71.65 E-value=21 Score=25.73 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIA 111 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A 111 (198)
.+|..+-..|++++|+.+|-+| |.+|- ++.+...+-.++-++.++..+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nA------l~V~~----qP~~LL~i~q~tlP~~vf~~l~ 116 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNA------LKVCP----QPAELLQIYQKTLPPPVFEMLV 116 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------HHTSS----SHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH------HHhCC----CHHHHHHHHHhhCCHHHHHHHH
Confidence 5688999999999999999888 77775 7889999988877777665543
No 287
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.20 E-value=11 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+..-|--+++.|.+.+|+.+|..+ |+++.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a------Ie~L~ 37 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA------IEVLS 37 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH------HHHHH
Confidence 445678899999999999999998 66555
No 288
>KOG3824|consensus
Probab=71.16 E-value=11 Score=31.91 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
..++++..+|.+.|..++.-+|-.+|.+|-.
T Consensus 148 ~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 148 TNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred CCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 4789999999999999999999999999853
No 289
>KOG4340|consensus
Probab=71.15 E-value=23 Score=29.98 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.4
Q ss_pred HcCChHHHHHHHHHcch
Q psy12373 129 LSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 129 ~ag~~~~A~~la~~~~~ 145 (198)
+|+.+-+|+++++.-+.
T Consensus 90 ~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLD 106 (459)
T ss_pred HhcccHHHHHHHHHhcC
Confidence 57788889888877665
No 290
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.01 E-value=15 Score=33.39 Aligned_cols=124 Identities=17% Similarity=0.244 Sum_probs=71.9
Q ss_pred HHcCCHHHHHHHHHHc--cCHHH--HHhhhhccC---------------ChHHHHHHHHHHH-HcCCHHHHHHHHHHhcC
Q psy12373 17 ESAGNYEKAATCYIQL--KNWTK--IGQLLPHIK---------------SATTFIQYAKAKE-AMGSYRESVGAYERAED 76 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~--~~~~~--a~~l~~~~~---------------~~~l~~~~A~~~e-~~g~~~~A~~~Y~ka~~ 76 (198)
.-.||+..++...... ..|.. +.+|+...+ ..-++..+|..+. ..+-|+-|+.+...+++
T Consensus 308 i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~ 387 (566)
T PF07575_consen 308 IFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPD 387 (566)
T ss_dssp HHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SS
T ss_pred HHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCCh
Confidence 3468888888887766 43554 355553211 1124456776655 55669999999999886
Q ss_pred H-HHHHHHHhh-----ccCCHHHHHHHHHhcCCHHHHH----HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 77 Y-DNVVRVDLD-----HLNDIRHAVDIVKAKKCTEGAK----RIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 77 ~-~~av~l~~~-----~~~~~~~a~~l~~~~~~~~~~~----~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
. ..+++.++. ...+.+++.++|++.+-++... .+|+.+.+.|++-+|+..|.+||++...-+++
T Consensus 388 ~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 388 EGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp S-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
Confidence 4 455666553 2346677888888877665543 46777788899999999999999988776665
No 291
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=70.72 E-value=6.8 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
...++..||.++|..|++.+|.+.|.+
T Consensus 98 ~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 98 LALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456777899999999999999999975
No 292
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=68.71 E-value=55 Score=26.81 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=63.0
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHH-HHHcCCHHHHHHHHHHhcC--------HHHHHHHH
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKA-KEAMGSYRESVGAYERAED--------YDNVVRVD 84 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~-~e~~g~~~~A~~~Y~ka~~--------~~~av~l~ 84 (198)
+...+.+..+.|-.+|.++.. .......++..+|.. +...++.+-|.+.|+++=. |..-|+.+
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 344444445555555544421 111256777788877 4446776668888887631 35556777
Q ss_pred hhccCCHHHHHHHHHhc----CCHH----HHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373 85 LDHLNDIRHAVDIVKAK----KCTE----GAKRIADYCNKHGDFGAAIHFLILSKCY 133 (198)
Q Consensus 85 ~~~~~~~~~a~~l~~~~----~~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~ 133 (198)
+ .+|+.+.+-.+-+.. +... ....+.++=.+.|+.+....++.++...
T Consensus 81 ~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 I-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp H-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred H-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7 678888877666542 2222 2223444445778998888888776653
No 293
>PF13041 PPR_2: PPR repeat family
Probab=68.30 E-value=9.3 Score=22.23 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~~ 142 (198)
|...+..|.+.|++++|+++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 34678889999999999888743
No 294
>KOG3081|consensus
Probab=68.09 E-value=69 Score=26.60 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=9.7
Q ss_pred HhcCChhhHHhhhh
Q psy12373 181 FRVSQQSRAMPCSS 194 (198)
Q Consensus 181 ~~ag~~~~Al~l~~ 194 (198)
+.-|+|++|..++.
T Consensus 218 l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 218 LQLGRYEEAESLLE 231 (299)
T ss_pred HHhcCHHHHHHHHH
Confidence 66777777766654
No 295
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.10 E-value=14 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.-|.-.+..|++++|+.+|..+ ++.+.
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a------~e~l~ 39 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKA------IEYLL 39 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence 4567788899999999999998 66665
No 296
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=67.09 E-value=14 Score=23.93 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+..-|.-.+..|++++|+.+|..+ |+.+.
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~a------ie~l~ 37 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHA------LEYFM 37 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence 334567788999999999999998 66665
No 297
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.04 E-value=74 Score=26.53 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
+|.+-...+|+.+...|++..|...|.++.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~ 183 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNAL 183 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 366667778999999999999999999984
No 298
>KOG1156|consensus
Probab=66.27 E-value=77 Score=29.51 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=48.3
Q ss_pred HHHHccCHHHHHhhhhc-cC-Ch---HHHHHHHHHHHHcCCHHHHHHHHHHhcCH---HHHHH-----HHhhccCCHHHH
Q psy12373 28 CYIQLKNWTKIGQLLPH-IK-SA---TTFIQYAKAKEAMGSYRESVGAYERAEDY---DNVVR-----VDLDHLNDIRHA 94 (198)
Q Consensus 28 ~y~~~~~~~~a~~l~~~-~~-~~---~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---~~av~-----l~~~~~~~~~~a 94 (198)
-|-..|+++.+...++. ++ +| +++..=|+.+...|++++|...+..+... +++|+ =++ +.|+.++|
T Consensus 380 h~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmL-rAn~i~eA 458 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYML-RANEIEEA 458 (700)
T ss_pred HHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHH-HccccHHH
Confidence 33444555555444432 22 33 34444499999999999999999999864 45566 234 67899999
Q ss_pred HHHHHh
Q psy12373 95 VDIVKA 100 (198)
Q Consensus 95 ~~l~~~ 100 (198)
..++..
T Consensus 459 ~~~~sk 464 (700)
T KOG1156|consen 459 EEVLSK 464 (700)
T ss_pred HHHHHH
Confidence 998865
No 299
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=66.25 E-value=8.2 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373 66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK 101 (198)
Q Consensus 66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~ 101 (198)
+...-|.+.|+|.+|+.+++ .++++-.+.++.+..
T Consensus 2 Q~L~N~l~~~~y~~Al~LAl-~L~~P~~ll~i~~~~ 36 (141)
T PF08625_consen 2 QELSNLLRQKDYKEALRLAL-KLDHPFRLLKILKDL 36 (141)
T ss_pred chHHHHHHhhhHHHHHHHHH-hcCCcHHHHHHHHHH
Confidence 34566888999999999999 999999998887753
No 300
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=66.11 E-value=94 Score=27.42 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcC-HH-HH--HH-HHh--hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAED-YD-NV--VR-VDL--DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~-~~-~a--v~-l~~--~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
-=|+.-+-.|+++.|.+-|+..-+ ++ +. +| +|+ +.+|.-+.|.+.+.......-...|| ...-++
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA--------~~AtLe 196 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA--------ARATLE 196 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH--------HHHHHH
Confidence 338888999999999999987643 32 11 11 222 13444444444443211100011111 134566
Q ss_pred HHHHcCChHHHHHHHHHcc
Q psy12373 126 FLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 126 ~y~~ag~~~~A~~la~~~~ 144 (198)
.-+.+|+|+.|++|.....
T Consensus 197 ~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhcCChHHHHHHHHHHH
Confidence 6777788888877765443
No 301
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=64.34 E-value=23 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=23.5
Q ss_pred HcCCHHHHHHHHHHh-------cCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 60 AMGSYRESVGAYERA-------EDYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 60 ~~g~~~~A~~~Y~ka-------~~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
-.|+|++|+..|... ++...+.+... .-|+|+++.....
T Consensus 161 l~gd~~~Av~~il~~~~~~~~~~~~~~ar~~~~-~~gd~~~~l~~~p 206 (319)
T cd02577 161 LEGDYEEAAKTYLTARYPLEETGDKKRALRLFP-KWGDWERCLKEYP 206 (319)
T ss_pred HccCHHHHHHHHhcCCcccccchHHHHHHHHHH-hcCCHHHHHHHhh
Confidence 456788888777742 22344555555 5577777766543
No 302
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.17 E-value=16 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..-|.-++..|++++|+.+|..+
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 34567788999999999999998
No 303
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.85 E-value=18 Score=23.77 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+...|--+.+.|+|++|+.+|..+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~a 32 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEA 32 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 345677888999999999999998
No 304
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=62.08 E-value=20 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-|.-.+..|++++|+.+|..+
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a 32 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEA 32 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4566788889999999999998
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=61.78 E-value=9.7 Score=32.92 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=9.8
Q ss_pred HhcCChhhHHhhh
Q psy12373 181 FRVSQQSRAMPCS 193 (198)
Q Consensus 181 ~~ag~~~~Al~l~ 193 (198)
+.+|++++|++.+
T Consensus 316 vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 316 VLAGDYEKAIQAA 328 (374)
T ss_pred HHcCCHHHHHHHH
Confidence 7888888877654
No 306
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=60.72 E-value=14 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCccccchHHHHHHHHHHcC-CHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAG-NYEKAATC 28 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g-~~~~Ai~~ 28 (198)
|||+ .+.+.+.+..++ +.+.|++.
T Consensus 12 mGf~----~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 12 MGFS----REQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HTS-----HHHHHHHHHHTTTSHHHHHHH
T ss_pred cCCC----HHHHHHHHHHcCCCHHHHHHh
Confidence 5666 456666666664 77777764
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=60.49 E-value=70 Score=26.11 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHcCCHHHHHHHHHHccCHHHH--HhhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHhcCH
Q psy12373 17 ESAGNYEKAATCYIQLKNWTKI--GQLLPHIKSATTFIQYAKAKEAMG-SYRESVGAYERAEDY 77 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~~~~~~a--~~l~~~~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka~~~ 77 (198)
.+.||.+.|..||.+++..... +..+.. -..+++.+|.-+-+.+ ++++|+....++-++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3568888888888877665530 111111 2367788898888899 999999999888665
No 308
>KOG3837|consensus
Probab=57.22 E-value=67 Score=28.34 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-----------------------------------------
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH----------------------------------------- 44 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~----------------------------------------- 44 (198)
+++|+.|+..=.+.||..+|...+.-+++|+.+.+.++.
T Consensus 108 q~dyk~aalqAK~~Gderka~mh~Rvakqfd~vIka~~rG~~VdlseLPppPdtmgpep~~vAp~aAAel~~~Ppaqp~~ 187 (523)
T KOG3837|consen 108 QRDYKLAALQAKQQGDERKAAMHFRVAKQFDAVIKALSRGEPVDLSELPPPPDTMGPEPPQVAPSAAAELPSQPPAQPTA 187 (523)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCccccCCCCCCCCccccccCCCCCCCCCCC
Confidence 478999999999999999999999999999998777751
Q ss_pred --c-CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHh
Q psy12373 45 --I-KS-----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 45 --~-~~-----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
. ++ .....+++-.++...+|..|.-.=.+.||.+.|=.-.. ..+++|++++-++.
T Consensus 188 Pt~pss~ppprasts~qlalllerq~qyq~AAiqAKs~gD~eqAK~ylr-i~Kgfd~~I~aa~a 250 (523)
T KOG3837|consen 188 PTTPSSPPPPRASTSGQLALLLERQRQYQVAAIQAKSKGDQEQAKMYLR-IVKGFDDAIRAAKA 250 (523)
T ss_pred CCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 0 00 01233556666666667777666666777666532222 45567777766654
No 309
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=56.55 E-value=85 Score=29.48 Aligned_cols=76 Identities=13% Similarity=0.039 Sum_probs=48.2
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhc---------------------cCChHHHHHHHHHHHH---cCCHHHHHHH
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPH---------------------IKSATTFIQYAKAKEA---MGSYRESVGA 70 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~---------------------~~~~~l~~~~A~~~e~---~g~~~~A~~~ 70 (198)
-+.++|+++.|++.....|++-+|+-|.-- ...+.+..+..-.+.. .+.|+.|+-.
T Consensus 142 ~llR~G~~~eA~~lc~~~gq~wrAasL~G~~~~~dp~~~~~~~~~~~~~~G~~~r~LWk~~c~~ls~~~~~~~yEraiY~ 221 (697)
T PF04121_consen 142 ELLRAGRIEEAQELCRERGQPWRAASLCGWQLYHDPNLDPELSDEDERMEGNRSRALWKRACYKLSQNPNLDPYERAIYG 221 (697)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHTTSB-B-TTTSGGGTTT-SS-BSBTTHHHHHHHHHHHHHTSSS-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHcCccccCCcccccccccccccccCChhHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456889999999999999998887777630 0124444444333333 2578999988
Q ss_pred HHHhcCHHHHHHHHhhccCCHHHH
Q psy12373 71 YERAEDYDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 71 Y~ka~~~~~av~l~~~~~~~~~~a 94 (198)
|.- |+...++.+|. . .|++.
T Consensus 222 ~L~-G~~~~~l~~~~-~--sWeD~ 241 (697)
T PF04121_consen 222 ALS-GDLSSVLPVCS-S--SWEDY 241 (697)
T ss_dssp HHH-TS---HHHHTT----SHHHH
T ss_pred HHh-cccHhhhhhcc-C--CHHHH
Confidence 887 99999999996 2 78874
No 310
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.99 E-value=75 Score=22.96 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=29.3
Q ss_pred ccCCHHHHHHHHHhcCC---HHHHH-HHHHHHHhcCCHHHHHHHHHH
Q psy12373 87 HLNDIRHAVDIVKAKKC---TEGAK-RIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 87 ~~~~~~~a~~l~~~~~~---~~~~~-~~A~~~~~~g~~~~Av~~y~~ 129 (198)
..+++.+.+.......- ...++ .+|.+++..|++.+|.+.|.+
T Consensus 78 ~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 78 NCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44567776666554331 22233 579999999999999998865
No 311
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=55.33 E-value=25 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHcc
Q psy12373 9 DRGKWTLYESAG-NYEKAATCYIQLK 33 (198)
Q Consensus 9 ~~~Aa~~y~~~g-~~~~Ai~~y~~~~ 33 (198)
.+.|..+++.++ +.+.||..|...+
T Consensus 15 ~~~A~~~L~~~~wdle~Av~~y~~~~ 40 (43)
T PF14555_consen 15 EDVAIQYLEANNWDLEAAVNAYFDDG 40 (43)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 477888888887 9999999998654
No 312
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=55.30 E-value=36 Score=21.24 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP 43 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~ 43 (198)
.+|..|+.-=.+.||.++|-++..-.+.|+.+.+.++
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 6789999999999999999999999999999887775
No 313
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=55.28 E-value=1.2e+02 Score=24.90 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=39.6
Q ss_pred hHHHHHHH-HHHcCCHHHHHHHHHHccCHHHHHhhhhcc-CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 8 LDRGKWTL-YESAGNYEKAATCYIQLKNWTKIGQLLPHI-KSATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 8 ~~~~Aa~~-y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~-~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
-|...|.+ |.-.+|.+.|..+|... ++.. .+..+...+..++...|+.+.|-.+|+++=.
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~g---------lk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERG---------LKKFPSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHH---------HHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45555666 33345555566666432 2222 3778888999999999999999999999843
No 314
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=1.3e+02 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+.++..-+|+.+-..|+.+.|...+..
T Consensus 167 ~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 167 NSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 445666777777777777777776654
No 315
>KOG1941|consensus
Probab=54.45 E-value=95 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+..+++.+-..+.++.+.+.|++|
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A 148 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKA 148 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 4556788888888999998887776
No 316
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.99 E-value=67 Score=25.80 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCCHHHH-------HHHHHHccCHHHHHhhhhccCChHHHH--HHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 7 TLDRGKWTLYESAGNYEKA-------ATCYIQLKNWTKIGQLLPHIKSATTFI--QYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~A-------i~~y~~~~~~~~a~~l~~~~~~~~l~~--~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
.+++.|...|.+.|....+ .+-|..+|+|++|..+++.+. ..+. .|-...+. -.....+|+.+.||.
T Consensus 159 ~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~--~~yr~egW~~l~~~--~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 159 ELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA--SSYRREGWWSLLTE--VLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHhCCcHHHHHH--HHHHHHHHHHHhCCH
Confidence 4566677777766654333 334556677777776665541 1111 01111111 134556677777777
Q ss_pred HHHHHHHh
Q psy12373 78 DNVVRVDL 85 (198)
Q Consensus 78 ~~av~l~~ 85 (198)
+..|.+++
T Consensus 235 ~~~l~~~l 242 (247)
T PF11817_consen 235 EDYLTTSL 242 (247)
T ss_pred HHHHHHHH
Confidence 77777766
No 317
>KOG0550|consensus
Probab=53.36 E-value=47 Score=29.28 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHH----------HHHHhcCHHHHHHHHh
Q psy12373 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG----------AYERAEDYDNVVRVDL 85 (198)
Q Consensus 16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~----------~Y~ka~~~~~av~l~~ 85 (198)
--+.|++..|-++|..+-+++-= ..-....++...|...-+.|..++|+. -|+++ +...-+++.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika--ll~ra~c~l 332 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA--LLRRANCHL 332 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH--HHHHHHHHH
Confidence 34568888888888766444320 000123334344444444444444443 23333 233355555
Q ss_pred hccCCHHHHHHHHH
Q psy12373 86 DHLNDIRHAVDIVK 99 (198)
Q Consensus 86 ~~~~~~~~a~~l~~ 99 (198)
-+++|++|++-..
T Consensus 333 -~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 333 -ALEKWEEAVEDYE 345 (486)
T ss_pred -HHHHHHHHHHHHH
Confidence 5677887776544
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.07 E-value=1.1e+02 Score=24.10 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAA 123 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~A 123 (198)
..++..+|=.+...|+-+....++.+| ++.+. +|+.--.. .+.....+++|.-..+.|++++|
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~A------l~~y~-------~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA 184 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKA------LEFYE-------EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEA 184 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHH------HHHHH-------HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 346667777788888877777777666 33332 11111000 01122455677777777777777
Q ss_pred HHHHHH
Q psy12373 124 IHFLIL 129 (198)
Q Consensus 124 v~~y~~ 129 (198)
+..|.+
T Consensus 185 ~~~fs~ 190 (214)
T PF09986_consen 185 KRWFSR 190 (214)
T ss_pred HHHHHH
Confidence 666543
No 319
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.84 E-value=1.7e+02 Score=26.26 Aligned_cols=135 Identities=14% Similarity=0.111 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHH--------HHhhhhc-------cCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTK--------IGQLLPH-------IKSATTFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~--------a~~l~~~-------~~~~~l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
.+...|.++.+..|+-++|+++......|.. +.++++. .+.-+-+.++....+..|-..--+.==
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 3567788999998889999998875544431 1122210 011112223333333333211111111
Q ss_pred HHhcCHHHHHHHHhhccCCHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--------hHHHHHH
Q psy12373 72 ERAEDYDNVVRVDLDHLNDIRHAV----DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC--------YQDAFNL 139 (198)
Q Consensus 72 ~ka~~~~~av~l~~~~~~~~~~a~----~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--------~~~A~~l 139 (198)
+.++-...|==++. + |+.+++. -+.+-.||+.+...++--+....+|++|-+++.+--- ..+|+-+
T Consensus 461 eian~LaDAEyLys-q-gey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~l 538 (549)
T PF07079_consen 461 EIANFLADAEYLYS-Q-GEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALAL 538 (549)
T ss_pred HHHHHHHHHHHHHh-c-ccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 11111111111221 1 3333322 2344467888777788888888888888888776433 4455555
Q ss_pred HHHc
Q psy12373 140 SQQH 143 (198)
Q Consensus 140 a~~~ 143 (198)
|.+|
T Consensus 539 CqKh 542 (549)
T PF07079_consen 539 CQKH 542 (549)
T ss_pred HHHh
Confidence 5554
No 320
>KOG4234|consensus
Probab=52.44 E-value=1.1e+02 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..=|+-+-..|+|++|..-|..| +.+|-
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~A------le~cp 126 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEA------LESCP 126 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHH------HHhCc
Confidence 34577788889999999888877 66665
No 321
>KOG1550|consensus
Probab=52.01 E-value=1.7e+02 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHcC---CHHHHHHHHHHh
Q psy12373 45 IKSATTFIQYAKAKEAMG---SYRESVGAYERA 74 (198)
Q Consensus 45 ~~~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka 74 (198)
.+.+.-...+|..++... ++..|.++|..|
T Consensus 322 ~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 322 LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred cCCchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 346666666776666554 566777777766
No 322
>KOG0545|consensus
Probab=51.58 E-value=1.1e+02 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+++.+-|+-+-..|.|.+|+..|..|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreA 204 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREA 204 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHH
Confidence 456778899999999999999999876
No 323
>cd02576 PseudoU_synth_ScPUS7 PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=51.28 E-value=48 Score=28.50 Aligned_cols=36 Identities=8% Similarity=-0.086 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHcC------CHHHHHHHHHHccCHHHHHhhh
Q psy12373 7 TLDRGKWTLYESAG------NYEKAATCYIQLKNWTKIGQLL 42 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g------~~~~Ai~~y~~~~~~~~a~~l~ 42 (198)
+.|++|..++...- +..++-++|...++|..+.+++
T Consensus 171 ~~~~~Av~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~ 212 (371)
T cd02576 171 ENWKEAVDLILKPRSELEEGDLVEAREIWKETGDAKAALKKL 212 (371)
T ss_pred hhHHHHHHHHhCCCcccccHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34555555555432 3444445555555555544443
No 324
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=51.02 E-value=56 Score=30.65 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=13.6
Q ss_pred CChhhH---HhcCChhhHHhhh
Q psy12373 175 KGVLTS---FRVSQQSRAMPCS 193 (198)
Q Consensus 175 g~~~~A---~~ag~~~~Al~l~ 193 (198)
+.|++| ..+|+...++.+|
T Consensus 213 ~~yEraiY~~L~G~~~~~l~~~ 234 (697)
T PF04121_consen 213 DPYERAIYGALSGDLSSVLPVC 234 (697)
T ss_dssp -HHHHHHHHHHHTS---HHHHT
T ss_pred CHHHHHHHHHHhcccHhhhhhc
Confidence 578888 8999999999998
No 325
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=50.46 E-value=5.5 Score=16.65 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q psy12373 67 SVGAYERAE 75 (198)
Q Consensus 67 A~~~Y~ka~ 75 (198)
|+++|.+++
T Consensus 1 A~~~y~~Aa 9 (12)
T PF02071_consen 1 AIKCYEKAA 9 (12)
T ss_pred CcHHHHHHH
Confidence 345555554
No 326
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.31 E-value=33 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 55 AKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
|-.-...|+|++|+++|..+ |+.+.
T Consensus 13 A~~eD~~gny~eA~~lY~~a------le~~~ 37 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEA------VELCI 37 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHH------HHHHH
Confidence 34455788999999999998 88888
No 327
>KOG2610|consensus
Probab=48.79 E-value=1.2e+02 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
..|..+|..|.+.++.++-.+..|
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHhccc
Confidence 345556666666666655444443
No 328
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=48.58 E-value=98 Score=23.15 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH
Q psy12373 53 QYAKAKEAMG-SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK 108 (198)
Q Consensus 53 ~~A~~~e~~g-~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~ 108 (198)
.+|..+-..| +.++|+.+|-+| |.+|- ++.+...+-.++-++.++.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nA------l~Vc~----qP~~LL~iyq~tlP~~Vf~ 141 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNA------LKVYP----QPQQLLSIYQQTLPEPIFR 141 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHH------HHhCC----CHHHHHHHHHhhCCHHHHH
Confidence 4689999999 999999999888 87765 7999999888776666554
No 329
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.41 E-value=38 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=17.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHh
Q psy12373 54 YAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 54 ~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.|--++..|+.++|+.+|.++
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~g 34 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKG 34 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHH
Confidence 455677889999999999998
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.09 E-value=1.3e+02 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=18.5
Q ss_pred ccCChHHHHHHHHHHHHcC---CHHHHHHHHHHh
Q psy12373 44 HIKSATTFIQYAKAKEAMG---SYRESVGAYERA 74 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka 74 (198)
...|.+.++.||-.+-... +..++.++|+.+
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedA 54 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDA 54 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 4457788888887655443 335677777766
No 331
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.47 E-value=45 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.-|--....|++++|..+|..+ |+.++
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~a------le~~~ 37 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSA------LQYFV 37 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHH------HHHHH
Confidence 4456677889999999999888 65555
No 332
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.28 E-value=1e+02 Score=22.02 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHHhh---ccCCHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 79 NVVRVDLD---HLNDIRHAVDIVKAKK----CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 79 ~av~l~~~---~~~~~~~a~~l~~~~~----~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+-|++++. ...++.+.+..+.... .+.--..+|.+++..|++++|.+.|.++
T Consensus 67 RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 67 RYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44444442 3344555555554322 1222336899999999999999988764
No 333
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.01 E-value=31 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 83 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l 83 (198)
...++..+|..+-+.|.+-+|+.+|.++||...+=++
T Consensus 424 a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i 460 (566)
T PF07575_consen 424 AREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRI 460 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
Confidence 4567778888888999999999999999998554333
No 334
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.93 E-value=65 Score=27.63 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=37.6
Q ss_pred ccCCHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 87 HLNDIRHAVDIVKAKKC-TEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 87 ~~~~~~~a~~l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
...+++..+.+.+++|- .+...+++..+...||...|.++..+|--
T Consensus 22 ~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 22 QSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34588889999988885 55677899999999999999988877743
No 335
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=46.48 E-value=1.2e+02 Score=22.50 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
++.-+++-|...-..|+|++|++.|+...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~ 37 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALD 37 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566677888888888888888888764
No 336
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.38 E-value=53 Score=18.09 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAY 71 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y 71 (198)
-+.-+|-.+-.+|++++|+++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3455678888999999999994
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.90 E-value=52 Score=18.45 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+++..+|..--..++|++|++=|.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~a 27 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKA 27 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45667888888889999999877777
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.78 E-value=49 Score=30.08 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccCCH---HHHH----HHHH---hcC---CHHHHH--HHHHHHH--------hcCCH--
Q psy12373 66 ESVGAYERAEDYDNVVRVDLDHLNDI---RHAV----DIVK---AKK---CTEGAK--RIADYCN--------KHGDF-- 120 (198)
Q Consensus 66 ~A~~~Y~ka~~~~~av~l~~~~~~~~---~~a~----~l~~---~~~---~~~~~~--~~A~~~~--------~~g~~-- 120 (198)
+=+.-|++.+.+++||+++. .+|+- +..+ .|+. +.| ..+... .++.+|. ....|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~-smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLL-SMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHH-hCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 44557889999999999988 54432 1121 2221 111 222222 2344441 01111
Q ss_pred ---HHHH---HHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 121 ---GAAI---HFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 121 ---~~Av---~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
+-|- ..+.+.+++++||.||.+-|..|.|-++-
T Consensus 492 ~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh 530 (545)
T PF11768_consen 492 PVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLH 530 (545)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHH
Confidence 1233 34467899999999998888877776664
No 339
>KOG3024|consensus
Probab=44.06 E-value=1.3e+02 Score=25.14 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.+|.++..+|..+-..+++.+|..+|..+.|...--.+++
T Consensus 125 G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ll 164 (312)
T KOG3024|consen 125 GHPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYMLL 164 (312)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHHHH
Confidence 4899999999999999999999999999999988777555
No 340
>KOG0686|consensus
Probab=43.68 E-value=22 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHH
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWT 36 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~ 36 (198)
+++-+.+|..||+.+.|+++|.+.++|-
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYC 180 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYC 180 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhh
Confidence 4567889999999999999999966643
No 341
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=43.64 E-value=68 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=18.5
Q ss_pred HHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373 57 AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 57 ~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l 97 (198)
.+...|+++.|...+-+.-. ++.+.-+....+++..|+..
T Consensus 191 ~~~~~gd~~~~l~~~p~~~~-e~~l~~l~~~~~~y~~Al~~ 230 (319)
T cd02577 191 LFPKWGDWERCLKEYPTNLE-ERRVKHLLAEPKDYKGAFLA 230 (319)
T ss_pred HHHhcCCHHHHHHHhhHhHH-HHHHHHHhhCCccHHHHHHh
Confidence 34455677766665443222 22222222244555555543
No 342
>KOG4234|consensus
Probab=43.58 E-value=1.7e+02 Score=23.49 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHcCCHHHHHHHHHHccCHHHHHhhhhccCC--hH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKS--AT-TFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~--~~-l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
-+.|+++.|..-|.. |..++...+. +. ++..-|-.+-..+.|+.||+--.|
T Consensus 106 F~ngdyeeA~skY~~------Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQE------ALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred hhcccHHHHHHHHHH------HHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 345777777776643 4666655442 11 233334444455555555544333
No 343
>KOG0687|consensus
Probab=43.22 E-value=1.6e+02 Score=25.23 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=33.3
Q ss_pred HHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCHHHHHHHHHHcCChHHH
Q psy12373 68 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCN----KHGDFGAAIHFLILSKCYQDA 136 (198)
Q Consensus 68 ~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~----~~g~~~~Av~~y~~ag~~~~A 136 (198)
.++|.+.||.++|+..+... .++++.+.-+..-.=....+|-+|. -...+++|=.++.+.|+|+.=
T Consensus 111 aeYycqigDkena~~~~~~t---~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRKT---YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHhccHHHHHHHHHHH---HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 35677777777777776632 4444433221110000112333332 223456777777777777654
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=43.17 E-value=1.9e+02 Score=23.78 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHccCHHHHHhhhhccC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 24 KAATCYIQLKNWTKIGQLLPHIK---------SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 24 ~Ai~~y~~~~~~~~a~~l~~~~~---------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+-+++..+.|.++.|...+.++. .+.+....|+.+-..|+..+|+......
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445555556655544443211 5677778888888888888888766544
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.73 E-value=52 Score=23.36 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=8.2
Q ss_pred HHHHHHHHHhCCChhhH
Q psy12373 164 LKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 164 ~~~~A~~~e~~g~~~~A 180 (198)
-..||.++++.+.+.++
T Consensus 25 A~tIa~wL~~~~~~~E~ 41 (116)
T PF09477_consen 25 ANTIADWLEQEGEMEEV 41 (116)
T ss_dssp HHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHhCCcHHHH
Confidence 33455555555554444
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.53 E-value=91 Score=24.63 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=11.1
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q psy12373 55 AKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka 74 (198)
|..+-..|+-++|...|.++
T Consensus 166 GDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred hhHHHHcCchHHHHHHHHHH
Confidence 55555555555555555555
No 347
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=42.20 E-value=13 Score=22.23 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=15.5
Q ss_pred hHHhcCChhhHHhhhhhcCC
Q psy12373 179 TSFRVSQQSRAMPCSSGHHP 198 (198)
Q Consensus 179 ~A~~ag~~~~Al~l~~~~~~ 198 (198)
+++..|+++.|++.|.++.|
T Consensus 10 ~~i~~g~~~~a~~~~~~~~~ 29 (58)
T smart00668 10 ELILKGDWDEALEWLSSLKP 29 (58)
T ss_pred HHHHcCCHHHHHHHHHHcCH
Confidence 33778888888888887765
No 348
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=41.33 E-value=1.1e+02 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.031 Sum_probs=13.5
Q ss_pred hcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373 116 KHGDFGAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 116 ~~g~~~~Av~~y~~ag~~~~A~~la~~ 142 (198)
..|++++|+++-+.+|++.-|.=|++-
T Consensus 11 ~~~~i~~A~~~A~~~~n~~LA~Llsq~ 37 (290)
T PF12110_consen 11 SGHDIEEACELAIDSGNPHLATLLSQI 37 (290)
T ss_dssp HTT-HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHCCCchHHHHHHHh
Confidence 345555555555555555555555443
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.31 E-value=52 Score=19.11 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHH
Q psy12373 110 IADYCNKHGDFGAAIHF 126 (198)
Q Consensus 110 ~A~~~~~~g~~~~Av~~ 126 (198)
+|+.|...||.+.|.++
T Consensus 5 LA~ayie~Gd~e~Ar~l 21 (44)
T TIGR03504 5 LARAYIEMGDLEGAREL 21 (44)
T ss_pred HHHHHHHcCChHHHHHH
Confidence 45555555555555433
No 350
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.30 E-value=56 Score=21.28 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..|--.+..|+|++|..+|..+ |+.+.
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~------i~~~~ 37 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAG------VDLLL 37 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH------HHHHH
Confidence 4456667779999999999988 66665
No 351
>KOG1127|consensus
Probab=40.60 E-value=2.8e+02 Score=27.60 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---------HHHHHHHHhhccCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED---------YDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---------~~~av~l~~~~~~~~~~a~~l 97 (198)
|-++..-+|..+-+.|.+..|++.|.|+.. |..||-.|. +|...+++..
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd--~GkYkeald~ 652 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD--NGKYKEALDA 652 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 445555678899999999999999988763 344544443 4777776654
No 352
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=40.13 E-value=88 Score=24.35 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH----cCChHHHHHHHHHcchhhHH
Q psy12373 102 KCTEGAKRIADYCNKHGDFGAAIHFLIL----SKCYQDAFNLSQQHKKLHEF 149 (198)
Q Consensus 102 ~~~~~~~~~A~~~~~~g~~~~Av~~y~~----ag~~~~A~~la~~~~~~~~~ 149 (198)
-+|.++..+-.||.+.|+.+...++-+. .=+.+.++++|++++.++.+
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~Lydal 71 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDAL 71 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCee
Confidence 4577777888888888888776665543 44688999999999988643
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=39.95 E-value=1.8e+02 Score=22.65 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHhcC-HHHHHHH
Q psy12373 47 SATTFIQYAKAKEAM----GSYRESVGAYERAED-YDNVVRV 83 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~----g~~~~A~~~Y~ka~~-~~~av~l 83 (198)
....+..||..+.+. .+..+|.++|.+|-+ +++|++.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 446666677665543 345566677777644 3344544
No 354
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=39.88 E-value=59 Score=19.04 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 54 YAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 54 ~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+|+...--=++++|.++|.+...|+..|+...
T Consensus 10 iAkLMSLGLsid~A~~yYe~Gi~Ye~~~~~~~ 41 (46)
T PF09145_consen 10 IAKLMSLGLSIDKANDYYERGILYEDLIEKLR 41 (46)
T ss_dssp HHHHHHH---SHHHHHHHHHH-SSHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHHHHH
Confidence 45544444478999999999999998888766
No 355
>KOG3824|consensus
Probab=39.63 E-value=1.4e+02 Score=25.58 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHhhccCCHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 81 VRVDLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.++.. . |+.++|+++... -..++....++++.+...++-+|=++|.+|=-
T Consensus 124 ~~~~~-~-Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 124 GRSRK-D-GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHh-c-cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 45554 2 667777666542 13577888899999999999999999999865
No 356
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=39.22 E-value=96 Score=19.34 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcc
Q psy12373 110 IADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK 144 (198)
Q Consensus 110 ~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~ 144 (198)
.|..--..||.++|-.+.+-++.++.+|+.++.-.
T Consensus 14 Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~aG~ 48 (59)
T smart00685 14 AALQAKRAGDEEKARRHLRIAKQFDDAIKAARAGR 48 (59)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 34444567999999999999999999999886553
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=39.17 E-value=46 Score=23.45 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.1
Q ss_pred HhcCChhhHHhhh
Q psy12373 181 FRVSQQSRAMPCS 193 (198)
Q Consensus 181 ~~ag~~~~Al~l~ 193 (198)
..-|+|.+|+.+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3444555555443
No 358
>KOG2581|consensus
Probab=38.76 E-value=42 Score=29.53 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHhcCCHHH--HHHHHHHH-------HhcCCHHHHHHHHHHcC
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKAKKCTEG--AKRIADYC-------NKHGDFGAAIHFLILSK 131 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~~~~~~~--~~~~A~~~-------~~~g~~~~Av~~y~~ag 131 (198)
-.+|+++ +.+.+|.|.+++.++.-|+. --.+|+|+ .-++||..|.+.++.|-
T Consensus 214 ~LLr~yL-~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~ 274 (493)
T KOG2581|consen 214 LLLRNYL-HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQAL 274 (493)
T ss_pred HHHHHHh-hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHH
Confidence 4567788 88999999999987664443 22566653 56788888888776553
No 359
>KOG4648|consensus
Probab=38.53 E-value=86 Score=27.22 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~ 32 (198)
..+-+.-|-+.|.|+.||+||.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ 123 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTA 123 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhh
Confidence 345566677889999999999876
No 360
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=2.4e+02 Score=23.72 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 157 DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+.+.+.-+.+|..+-..|+++.|
T Consensus 232 dPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 232 DPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455777778888887666666666
No 361
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.89 E-value=1.8e+02 Score=23.33 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
-+++|..++..+-+|..-..++-.+- -+|-+|...|+.++|+++|++.
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN------~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALN------YSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHH------HHHHHHHTSS-HHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHH------HHHHHHHHcCChHHHHHHHHHH
Confidence 35566677766322222222222221 3566777778888888888665
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.88 E-value=1.3e+02 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...+++-+|......|++++|++.|.+.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4567777888888888888888888775
No 363
>KOG1064|consensus
Probab=35.91 E-value=4.3e+02 Score=28.43 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc-chhhHHhhhhhh-cCCCCHHHHHHHHHHHH-----hCCC-hhhH--
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH-KKLHEFGKFLLE-EDEPNPVELKRLAIHFE-----EDKG-VLTS-- 180 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~e-----~~g~-~~~A-- 180 (198)
|=.+..+.+|+-|+-||..+|...+|+++|.+. +.++..--+.+| ..+..| ++..+-..+. ++++ |...
T Consensus 1282 AFvLLgKhRfe~AaaFFLLagslkDAI~VC~kkl~DiQLALvI~RlYEgd~g~-~~~~LL~~~vLp~~v~~~DpwLrSma 1360 (2439)
T KOG1064|consen 1282 AFVLLGKHRFEHAAAFFLLAGSLKDAINVCCKKLNDIQLALVICRLYEGDGGP-TYKELLNKYVLPIAVQHNDPWLRSMA 1360 (2439)
T ss_pred HHHHhhhHHHHHHHHHHhhcchHHHHHHHHHHhhhhhhhhheeeeeecCCCch-HHHHHHHHhhcccccccCCHHHHHHH
Confidence 344667788999999999999999999999766 233221111122 122223 4433333221 2333 3332
Q ss_pred -HhcCChhhHHhhhhhc
Q psy12373 181 -FRVSQQSRAMPCSSGH 196 (198)
Q Consensus 181 -~~ag~~~~Al~l~~~~ 196 (198)
-.-++|.+|+.-+...
T Consensus 1361 yWiLkdy~rAl~tLl~~ 1377 (2439)
T KOG1064|consen 1361 YWILKDYTRALLTLLGQ 1377 (2439)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 6667888888766554
No 364
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=35.78 E-value=1.8e+02 Score=21.35 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=39.3
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhh--hccCChH-------HHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLL--PHIKSAT-------TFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~--~~~~~~~-------l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
++.-.+.+++-++|-.|..+-.... ++. ..++..+ -+..+|.....+|+.+-..++..-|.
T Consensus 8 Ad~a~~~~~~l~si~hYQqAls~se--~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 8 ADQAFKEADPLRSILHYQQALSLSE--EIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHH--HhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 3444567888899988876532221 221 1222222 23467999999999999998887764
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.34 E-value=1.1e+02 Score=20.45 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=24.3
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 44 HIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..++....+.+|..+-..|++++|++.+...
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4457888999999999999999998877665
No 366
>KOG4642|consensus
Probab=35.27 E-value=1.3e+02 Score=24.64 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhc---cC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPH---IK--SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~---~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
..|..|...|.++ --+..=+.||.+.++|+.+..=+.+ ++ ...-++.+|.++-....|++||....+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4566677777664 3344556788888889886444432 22 445667789999999999999999999
Q ss_pred h
Q psy12373 74 A 74 (198)
Q Consensus 74 a 74 (198)
+
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 8
No 367
>KOG2581|consensus
Probab=35.11 E-value=97 Score=27.37 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCHHHHHhhhhccC------C---hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 23 EKAATCYIQLKNWTKIGQLLPHIK------S---ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 23 ~~Ai~~y~~~~~~~~a~~l~~~~~------~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...+++|...+.|++|..++.+.. + ...++.+|+...-+++|..|.++|..|
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 456788888899999999887654 1 123445677788899999999999988
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.58 E-value=1.5e+02 Score=25.11 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
+.+-.+++.|..+|.+..|+.+..+.-..+.+. .....-+=+.+...|+--+|++.|++-.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~--------e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS--------EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh--------hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567777777777777777766554443322 1222234455667788788888887753
No 369
>KOG1070|consensus
Probab=34.54 E-value=5.5e+02 Score=26.74 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRES 67 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A 67 (198)
.+.....||.++-++.+-+.|
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHH
Confidence 444555555555555443333
No 370
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=34.27 E-value=72 Score=16.42 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAM----GSYRESVGAYERA 74 (198)
Q Consensus 50 l~~~~A~~~e~~----g~~~~A~~~Y~ka 74 (198)
.+..+|..+..- .+...|+.+|.++
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~A 31 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 345566665532 3778888888776
No 371
>KOG4648|consensus
Probab=33.72 E-value=35 Score=29.50 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
+..-|+.|-.+|.|++||.||.++-
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~i 124 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAI 124 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhh
Confidence 3456888889999999999999983
No 372
>KOG0889|consensus
Probab=33.68 E-value=36 Score=37.50 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCH-----------------HHHHHHHhhccCCHHHHHHHHHhcCCHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDY-----------------DNVVRVDLDHLNDIRHAVDIVKAKKCTE 105 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~-----------------~~av~l~~~~~~~~~~a~~l~~~~~~~~ 105 (198)
..|.-++..|.|++|-..|+++... +.-|+++. .+++||-..++++...+..
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~-eL~QWdvl~e~~k~~~~~~ 2555 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCAS-ELQQWDVLTEFGKHEGNYE 2555 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCce
Confidence 4577889999999999999998732 56799999 8999999999997655444
No 373
>KOG0396|consensus
Probab=31.49 E-value=1.8e+02 Score=25.19 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHc--------cCHHHHHhhhhcc---CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQL--------KNWTKIGQLLPHI---KSATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~--------~~~~~a~~l~~~~---~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
+-+=-..++.++|-+.-|+-+-.++ +-|.++..+-+.+ .-.+++.||.++...-..-+.-+++=.|.
T Consensus 118 l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRl-- 195 (389)
T KOG0396|consen 118 LDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRL-- 195 (389)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHH--
Confidence 3344566777777766666554322 2233343333322 24567778887766555444444443333
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373 77 YDNVVRVDLDHLNDIRHAVDIVKAK 101 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~~a~~l~~~~ 101 (198)
++.|+|+. .+++.+|+..++++
T Consensus 196 -QefIELi~--~~~~~~Ai~~akk~ 217 (389)
T KOG0396|consen 196 -QEFIELIK--VDNYDKAIAFAKKH 217 (389)
T ss_pred -HHHHHHHH--hccHHHHHHHHHHH
Confidence 44455554 35777777777665
No 374
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.47 E-value=2.3e+02 Score=21.38 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHHHcCChHHHH--HHHHHcchhhHHhhhhh----------hcCCCCHHHHHHHHHHHHhCC
Q psy12373 114 CNKHGDFGAAIHFLILSKCYQDAF--NLSQQHKKLHEFGKFLL----------EEDEPNPVELKRLAIHFEEDK 175 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~~~~A~--~la~~~~~~~~~~~~~~----------l~~~~~~~~~~~~A~~~e~~g 175 (198)
+.+.|+|+.+|..|.++...-+-. .+-.-...++.+..++. +.++.+.+.+..+-.++.+.+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~ 169 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELN 169 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Confidence 357799999999998877643333 22111112222233320 245567777777777776654
No 375
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=30.96 E-value=3.2e+02 Score=22.89 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhcc-CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH--H-------HHHH
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHI-KSATTFIQYAKAKEAMGSYRESVGAYERAEDYD--N-------VVRV 83 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~-~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~--~-------av~l 83 (198)
..|...|++...+++..-.++|....-+.+.+ ....+-.-+.+..++.+.+..|+--|.+--.+. . -.+|
T Consensus 54 ~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n~qfE~LL~k~~d~~~~lk~all~ylk~~~P~d~e~~~mv~l~F~m 133 (296)
T PF14649_consen 54 NHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIENDQFELLLRKGIDKVNGLKMALLDYLKRCCPEDKEKFSMVALHFNM 133 (296)
T ss_pred HHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHcChHHHHHhccccccchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543333321 122333344555566677888877777765431 1 1234
Q ss_pred HhhccCCHHH-HHHHHHhc---C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 84 DLDHLNDIRH-AVDIVKAK---K-------CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 84 ~~~~~~~~~~-a~~l~~~~---~-------~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
+.|....|+. |-.+++.. + +++.. -.-......+..|.+.|.+.++...|-+-+.+.
T Consensus 134 ~~Eia~~~e~~A~~~l~~l~~~~~~~~l~~~~~~~---~~L~~am~~~~~AAe~ylk~~~~~~A~~c~~~a 201 (296)
T PF14649_consen 134 YREIAELWEKRARQILKKLVSQPWEESLRDNPELK---SELLEAMENFTDAAENYLKDNCLRLAQRCAAQA 201 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4443444444 33333221 1 11111 111223345668999999999988886665544
No 376
>KOG0551|consensus
Probab=30.78 E-value=3.5e+02 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=6.3
Q ss_pred ccCCHHHHHHHHHh
Q psy12373 87 HLNDIRHAVDIVKA 100 (198)
Q Consensus 87 ~~~~~~~a~~l~~~ 100 (198)
.++.+++|++.|.+
T Consensus 165 eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 165 ELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444443
No 377
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=30.46 E-value=64 Score=24.85 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=46.3
Q ss_pred cCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC--ChhhH--HhcCChhhHHhhhhhc
Q psy12373 130 SKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK--GVLTS--FRVSQQSRAMPCSSGH 196 (198)
Q Consensus 130 ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g--~~~~A--~~ag~~~~Al~l~~~~ 196 (198)
.-+..++.+.|+++| +|.|.+.+.+++..+.+....++....+.- .|.-. .+.|-+.+.+++..+.
T Consensus 90 ~~RL~~tA~~A~e~g-fd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~gv~f~~~DfRk~~g~~~~~~lske~ 159 (176)
T PF02677_consen 90 DLRLEKTAQYAKELG-FDYFTTTLLISPYKNHELINEIGERLAKEYGVEFLYRDFRKKNGFQRSIELSKEL 159 (176)
T ss_pred HHHHHHHHHHHHHcC-CCEEEccccCcCccCHHHHHHHHHHHHHhhCCeEEeeccccCccHHHHHHHHHHh
Confidence 345677888888876 467788877899999999999999876543 22222 6666677777766553
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.42 E-value=3.5e+02 Score=23.18 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..|+++...|..+ ....+......++.+.+ --+.+.+++..+..+|+...|.++-++|
T Consensus 8 ~~Y~~~q~~F~~~----------v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 8 KAYQEAQEQFYAA----------VQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHH----------HHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556665555543 23457777777776555 5677889999999999999999999998
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.95 E-value=1.6e+02 Score=19.67 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=22.0
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 97 IVKAKKC-TEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 97 l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
-+...|+ .+....+|..+...|++++|++.+...
T Consensus 14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 14 ALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334443 456667888888888888887766543
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.23 E-value=1.7e+02 Score=22.20 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+.++.+..|++.....++..+...|+.++|-+...++
T Consensus 134 a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 134 AERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555566666666666667777776664444433
No 381
>KOG1258|consensus
Probab=29.16 E-value=4.6e+02 Score=24.20 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+.....+.+.-|+.++..-+|.++.-.-. .=..+...+++++++.|+.+-|-..+.++
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 33344445555555555555544311000 01234445566666666655555444444
No 382
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=28.86 E-value=2.1e+02 Score=20.16 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH-HHhhccCCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR-VDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~-l~~~~~~~~~~a~~l~~ 99 (198)
........+......+.+..+++.+.++... ..... ++. ..++++.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 154 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYE 154 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 3445556677777777777777777776541 11111 344 5566666655444
No 383
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.29 E-value=2.4e+02 Score=20.63 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=53.6
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhhccC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIK----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH 87 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~----------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~ 87 (198)
+.|.++.|...|.++ .++.++++ |.-.+-.++..+-..|.|+++...=.++ ++-.- +
T Consensus 21 ~~g~~~eAa~s~r~A------M~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a------L~YFN-R 87 (144)
T PF12968_consen 21 QDGAYEEAAASCRKA------MEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA------LRYFN-R 87 (144)
T ss_dssp HHT-HHHHHHHHHHH------HHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-H
T ss_pred HhhhHHHHHHHHHHH------HHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH------HHHHh-h
Confidence 347777777777655 44444444 3345557788888888888877654443 33332 2
Q ss_pred cCCHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 88 LNDIR---HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 88 ~~~~~---~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.|.++ .-.-| .+...=|..++..|..++|+..|.++|.
T Consensus 88 RGEL~qdeGklWI-------aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWI-------AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHH-------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 22221 11111 1123346678899999999999988875
No 384
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.07 E-value=2.6e+02 Score=21.01 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHhhccCCHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCH--HHHHHHHHHcCChHHHHHHHHH
Q psy12373 82 RVDLDHLNDIRHAVDIVKAKKC-----TEGAKRIADYCNKHGDF--GAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~~~~-----~~~~~~~A~~~~~~g~~--~~Av~~y~~ag~~~~A~~la~~ 142 (198)
.+++ ..|+|++|.++.++..+ +-...++|--+.-.||. .....--...+...+|+.|.+.
T Consensus 52 ~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~a 118 (153)
T TIGR02561 52 WLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLARDADADAVALVRA 118 (153)
T ss_pred HHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHHHHH
Confidence 3444 45677777777665332 21222344444455553 2322223345555666666543
No 385
>PRK15443 pduE propanediol dehydratase small subunit; Provisional
Probab=28.01 E-value=2.5e+02 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+|+.+...|+.-++.|...-|.++=..
T Consensus 47 tpetL~~QaqiAe~~Gr~~la~NfrRA 73 (138)
T PRK15443 47 TPETLRMQAQIAEDAGRPQLAMNFRRA 73 (138)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788999999999999998877654333
No 386
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=27.66 E-value=2e+02 Score=25.47 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 77 YDNVVRVDLDHLNDIRHAVDIVKAK------KCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~~a~~l~~~~------~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
....||.|+ ..|..++++.+.+.- ++.-.+..+=.+|.+.|++..|++.
T Consensus 106 ~ha~vR~~l-~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V 160 (429)
T PF10037_consen 106 HHALVRQCL-ELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKV 160 (429)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHH
Confidence 356799999 778899999888753 2333344444555555555555444
No 387
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=27.25 E-value=3.6e+02 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHh
Q psy12373 64 YRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 64 ~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
|...++.|.+.|+...|++.|.
T Consensus 190 ~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 190 YLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHcCCchHHHHHHH
Confidence 4555556666666666666665
No 388
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=27.17 E-value=3.9e+02 Score=24.52 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHHHHccCHHHHHhhh----h-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC----HHHHHHHHhh---ccCCHHH
Q psy12373 26 ATCYIQLKNWTKIGQLL----P-HIKSATTFIQYAKAKEAMGSYRESVGAYERAED----YDNVVRVDLD---HLNDIRH 93 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~----~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~----~~~av~l~~~---~~~~~~~ 93 (198)
|+--...|+...|.+-+ + ...+|.+..-.++.++..|+|+.|.....-+.. -.++.++..+ .+++|+.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33334556665543333 2 334888888889999999999999776654432 2455555552 4899999
Q ss_pred HHHHHHh
Q psy12373 94 AVDIVKA 100 (198)
Q Consensus 94 a~~l~~~ 100 (198)
|..++..
T Consensus 376 a~s~a~~ 382 (831)
T PRK15180 376 ALSTAEM 382 (831)
T ss_pred HHHHHHH
Confidence 9988863
No 389
>KOG2063|consensus
Probab=27.09 E-value=4.3e+02 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
...+..++.+.+.+...+.+|..-|.+++|+++..+...
T Consensus 494 vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 494 VEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 445677899999999999999999999999999876654
No 390
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=26.53 E-value=3.2e+02 Score=22.77 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQQHKKLHE 148 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~~~~~~~~ 148 (198)
...-|+-+++-|++-+|++++...+..+.
T Consensus 177 ~~d~V~~LI~~g~~ieAv~fi~~f~L~dk 205 (290)
T PF07899_consen 177 MPDIVEKLIKKGKQIEAVRFIYAFGLVDK 205 (290)
T ss_pred hHHHHHHHHHCCCccchHHHHHHHcCCCC
Confidence 34567777888888888888877776543
No 391
>KOG1497|consensus
Probab=25.99 E-value=1.9e+02 Score=24.81 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHH---------------HcCCHHHHHHHHHHccCHHHHHhhhhccC-------ChHHHHHH----HH
Q psy12373 3 WGALTLDRGKWTLYE---------------SAGNYEKAATCYIQLKNWTKIGQLLPHIK-------SATTFIQY----AK 56 (198)
Q Consensus 3 ~~~~~~~~~Aa~~y~---------------~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------~~~l~~~~----A~ 56 (198)
|+.-..++.|+...+ +.+-.-+-.++|.+.++...+..++.+.+ ++.+...+ |+
T Consensus 113 YE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~AR 192 (399)
T KOG1497|consen 113 YEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYAR 192 (399)
T ss_pred HHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHH
Q psy12373 57 AKEAMGSYRESVGAY 71 (198)
Q Consensus 57 ~~e~~g~~~~A~~~Y 71 (198)
.+...+.|-+|.+.|
T Consensus 193 vlD~krkFlEAAqrY 207 (399)
T KOG1497|consen 193 VLDYKRKFLEAAQRY 207 (399)
T ss_pred HHHHHHHHHHHHHHH
No 392
>cd02576 PseudoU_synth_ScPUS7 PseudoU_synth_ScPUS7: Pseudouridine synthase, TruD family. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=25.68 E-value=1.2e+02 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=23.1
Q ss_pred HcCCHHHHHHHHHHhc------CHHHHHHHHhhccCCHHHHHHHH
Q psy12373 60 AMGSYRESVGAYERAE------DYDNVVRVDLDHLNDIRHAVDIV 98 (198)
Q Consensus 60 ~~g~~~~A~~~Y~ka~------~~~~av~l~~~~~~~~~~a~~l~ 98 (198)
-.|+|++|+.+|...- +...+-+.+. ..++|+++.+..
T Consensus 169 l~~~~~~Av~~~l~~~~~~~~~~~~~~r~~~~-~~~~~~~~l~~~ 212 (371)
T cd02576 169 LKENWKEAVDLILKPRSELEEGDLVEAREIWK-ETGDAKAALKKL 212 (371)
T ss_pred HhhhHHHHHHHHhCCCcccccHHHHHHHHHHH-hcCCHHHHHHhc
Confidence 3457777777777643 3455555565 447777766554
No 393
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=24.66 E-value=1.3e+02 Score=19.13 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=12.7
Q ss_pred HHHHhhccCCHHHHHHHHHhcC
Q psy12373 81 VRVDLDHLNDIRHAVDIVKAKK 102 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~~~ 102 (198)
.+-+. ..|++.+|.++|-.+|
T Consensus 13 F~~l~-~~g~y~eAA~~AA~sP 33 (66)
T PF13838_consen 13 FNELF-SQGQYEEAAKVAANSP 33 (66)
T ss_dssp HHHHH-HTT-HHHHHHHHHHSG
T ss_pred HHHHH-HcCCHHHHHHHHHhCc
Confidence 55555 5677777777776544
No 394
>KOG0396|consensus
Probab=24.59 E-value=1e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHHHhCCChhhH---HhcCChhhHHhhhhhc
Q psy12373 169 IHFEEDKGVLTS---FRVSQQSRAMPCSSGH 196 (198)
Q Consensus 169 ~~~e~~g~~~~A---~~ag~~~~Al~l~~~~ 196 (198)
..+|-+-+..+. ++.++|.+||.....|
T Consensus 187 S~lEf~lRlQefIELi~~~~~~~Ai~~akk~ 217 (389)
T KOG0396|consen 187 SSLEFQLRLQEFIELIKVDNYDKAIAFAKKH 217 (389)
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334433344444 8999999999877655
No 395
>KOG4521|consensus
Probab=24.49 E-value=5.4e+02 Score=26.22 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|+.+++++..-+..+.++++|-.. +.. +.+ ++.+..+..+-++..+.|.+-+|
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~A-----Ie~---l~dd~ps~a~~~t~vFnhhldlgh~~qA 1040 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKA-----IEN---LPDDNPSVALISTTVFNHHLDLGHWFQA 1040 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-----HHh---CCCcchhHHHHHHHHHHhhhchhhHHHH
Confidence 347888888888888888888333 111 232 22344555666666777777777
No 396
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=24.19 E-value=1.3e+02 Score=16.12 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=13.4
Q ss_pred CCccccchHHHHHHHHH-HcCCHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYE-SAGNYEKAATCY 29 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~-~~g~~~~Ai~~y 29 (198)
|||. .+++...+. ..||.++|+...
T Consensus 11 mGf~----~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 11 MGFS----REEARKALRATNNNVERAVEWL 36 (38)
T ss_pred cCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 5665 334444433 346777776553
No 397
>KOG4056|consensus
Probab=23.98 E-value=3e+02 Score=20.35 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIAD 112 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~ 112 (198)
++|..+-..|++++.+.++..| |-+| |++.++..|.+.+-++..+..+-.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nA------i~vc----gqpaqLL~vlq~tlp~~if~~i~~ 135 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANA------IVVC----GQPAQLLQVLQQTLPEAIFAMLLK 135 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHH------Hhhc----CCHHHHHHHHHhhCCHHHHHHHHH
Confidence 5688999999999999888776 6555 579999999988777776655433
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.85 E-value=1.8e+02 Score=24.67 Aligned_cols=24 Identities=17% Similarity=-0.053 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.+-+.+...||--+|+..|.+-.+
T Consensus 318 ~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 318 GLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHhccchhhhhHHHHHHH
Confidence 345566677777777777766444
No 399
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=23.64 E-value=3e+02 Score=20.16 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcc-----CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHL-----NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~-----~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
+.-+|......+++-.++-+|.+| +.+.- .+ ...++..-+ +....-.+|+++...||.+=.++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqA------ls~se-~~~~~~~~el~dll~i-----~VisCHNLA~FWR~~gd~~yELk 71 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQA------LSLSE-EIDESNEIELEDLLTI-----SVISCHNLADFWRSQGDSDYELK 71 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHH------HHHHH-HhcccccccHHHHHHH-----HHHHHhhHHHHHHHcCChHHHHH
Confidence 345677888889999999999988 44433 21 222222111 11223468999999999877777
Q ss_pred HHHHcC
Q psy12373 126 FLILSK 131 (198)
Q Consensus 126 ~y~~ag 131 (198)
+...|-
T Consensus 72 YLqlAS 77 (140)
T PF10952_consen 72 YLQLAS 77 (140)
T ss_pred HHHHHH
Confidence 665553
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.40 E-value=1.3e+02 Score=24.70 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=35.8
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+..+.||.+.|.++|-++ ..++. ....-...+|.+.|+.|+++.|.+.|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qa------l~lap--~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 3 YMLAESGDAEAAAELYNQA------LELAP--EWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred chhcccCChHHHHHHHHHH------hhcCc--hhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 3455667777787777543 22211 12234556788899999999999999876
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=23.32 E-value=2e+02 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+++.++..++..+...|+.++|.....+
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444455555555555555443333
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.26 E-value=1.5e+02 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 120 FGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 120 ~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
|.+||+--+++|+.++|++|..+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEA 283 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEA 283 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 348899999999999999998555
No 403
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=23.21 E-value=2.1e+02 Score=19.01 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
+..+|+-..+.||-..|+.+|.-|..|.++|....
T Consensus 42 Y~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 42 YNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999988776543
No 404
>KOG4521|consensus
Probab=23.18 E-value=8.2e+02 Score=25.04 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=74.2
Q ss_pred HHHHcCCHHHHHHHHHHc----cCHHHHHhhhhc------------cCChH---H--HHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 15 LYESAGNYEKAATCYIQL----KNWTKIGQLLPH------------IKSAT---T--FIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~----~~~~~a~~l~~~------------~~~~~---l--~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
.|...|.+.+|++||+.+ +.|+.+-+++.. ..+++ + +.+.=+.||..+-.++++++=.+
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 366789999999999977 456655555542 11111 1 22334666666666666654444
Q ss_pred h----cC-H-------HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHH
Q psy12373 74 A----ED-Y-------DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 74 a----~~-~-------~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~ 141 (198)
| ++ + .....-.. .+|.|.+|....-+.|+.+.-.-+ ..+-|-....+|++..-..+-
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhl-dlgh~~qAy~ai~~npdserrrdc---------LRqlvivLfecg~l~~L~~fp- 1077 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHL-DLGHWFQAYKAILRNPDSERRRDC---------LRQLVIVLFECGELEALATFP- 1077 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhh-chhhHHHHHHHHHcCCcHHHHHHH---------HHHHHHHHHhccchHHHhhCC-
Confidence 3 11 1 11122233 456666666555554443321111 112233333334333222210
Q ss_pred HcchhhHHhh-hh----hhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 142 QHKKLHEFGK-FL----LEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 142 ~~~~~~~~~~-~~----~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
--|..+.+.+ +. +-.+...+..|.-+-.|+...+||.+|
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rka 1121 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKA 1121 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHH
Confidence 0011112222 11 112334466777777777788888777
No 405
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=22.50 E-value=1.3e+02 Score=15.69 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHh
Q psy12373 63 SYRESVGAYERA 74 (198)
Q Consensus 63 ~~~~A~~~Y~ka 74 (198)
+++.|.++|.++
T Consensus 23 d~~~A~~~~~~A 34 (39)
T PF08238_consen 23 DYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccchHHHHHHH
Confidence 467788887776
No 406
>KOG1915|consensus
Probab=22.18 E-value=6.1e+02 Score=23.22 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=32.5
Q ss_pred ccCHHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 32 LKNWTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 32 ~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
-+.|++|-.+..+ .++......+|+.-++.|+...|...|++|
T Consensus 187 ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455566555542 345666778899999999999999999998
No 407
>KOG1997|consensus
Probab=21.97 E-value=2.3e+02 Score=29.20 Aligned_cols=55 Identities=25% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHH----HHHHHHHcCCHHHHHHHHHHhc
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~----~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
..+=+-+.|++.++++..++.+= ..++++|... +|+.++..|++.+|..||..+-
T Consensus 1048 ~~mk~h~~d~~~~~dl~y~l~~~--------y~~~p~Lr~twl~~ma~~h~~~~~~~eaa~c~~~~a 1106 (1518)
T KOG1997|consen 1048 VQMKEHAMDPEMLADLMYQLAKS--------YANSPDLRITWLLSMAEIHEKNGNFAEAAQCYVHAA 1106 (1518)
T ss_pred HhHHHhhhCHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 34444455555555555433111 1235566554 4889999999999999999873
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=5e+02 Score=22.13 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHccCHHHHHhhhhc-----------cCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH
Q psy12373 25 AATCYIQLKNWTKIGQLLPH-----------IKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV 80 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~~-----------~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a 80 (198)
-.+.|++.++.+.+.+.+.+ ++. -.+-..+|....-....+.+-.+++|+|||++=
T Consensus 121 ~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 121 IAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 34566666666665555542 110 011112233333333456666788888888543
No 409
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=21.67 E-value=4.9e+02 Score=21.89 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHh
Q psy12373 64 YRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 64 ~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.++|.+...--.||..|+++|-
T Consensus 38 Le~Aad~LvV~rdF~aal~tCe 59 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCE 59 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.60 E-value=2e+02 Score=25.23 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 25 AATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+++.+-+|+|..|..+++.++ .-.+++.+|=.+.-.+.|.+|++.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888777776543 2246677888888889999999999875
No 411
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=21.27 E-value=1.5e+02 Score=15.77 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=12.6
Q ss_pred CCccccchHHHHHHHHHH-cCCHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYES-AGNYEKAATC 28 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~-~g~~~~Ai~~ 28 (198)
|||. .+++...+.+ .||.++|++.
T Consensus 11 mGf~----~~~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 11 MGFS----REEALKALRAANGNVERAAEY 35 (37)
T ss_pred cCCC----HHHHHHHHHHhCCCHHHHHHH
Confidence 5655 3345444444 4566666654
No 412
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.78 E-value=1.7e+02 Score=26.64 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 107 AKRIADYCNKH-----GDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 107 ~~~~A~~~~~~-----g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
..++|+.|.+. ..+.+|..+|..+.+|+.||.++.+.
T Consensus 504 lIQY~NRYRs~~~~v~~~l~eAe~lF~~~~dY~~s~eia~qa 545 (570)
T COG4477 504 LIQYGNRYRSRNAEVAKSLNEAERLFENAFDYDASFEIASQA 545 (570)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45667766542 34679999999999999999998544
No 413
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.78 E-value=2.6e+02 Score=18.29 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~ 145 (198)
.+....+|-.+...||++. ..|++|++-|...-.
T Consensus 16 deqaeLvALmwiGRGd~~~--------eew~~a~~~A~~~~~ 49 (75)
T PF12616_consen 16 DEQAELVALMWIGRGDFEA--------EEWEEAVAEARERAS 49 (75)
T ss_pred HHHHHHHHHHHhcCCCCCH--------HHHHHHHHHHHHhcc
Confidence 3445578889999998863 578888888866543
No 414
>KOG2709|consensus
Probab=20.74 E-value=2.2e+02 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh------------ccCCHHHHHHHHHhcC
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD------------HLNDIRHAVDIVKAKK 102 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~------------~~~~~~~a~~l~~~~~ 102 (198)
....|--++..+++++|+.+|+++ +++.++ ..-.|++|..+..+..
T Consensus 25 ~V~~gl~~dE~~~~e~a~~~Ye~g------l~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklk 82 (560)
T KOG2709|consen 25 SVEQGLCYDEVNDWENALAMYEKG------LNLIVEGIPVGEKMKNARKSEMWKDACALIQKLK 82 (560)
T ss_pred HHHhhcchhhhcCHHHHHHHHHHH------HHHHHhcCcccccccccccchhhHHHHHHHHHHH
Confidence 345566788999999999999998 777763 1235777766665443
Done!