Query psy12373
Match_columns 198
No_of_seqs 150 out of 649
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:30:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 99.7 4.7E-16 1.6E-20 147.8 21.2 146 6-152 1062-1243(1630)
2 1xi4_A Clathrin heavy chain; a 99.6 2.3E-13 8E-18 129.5 20.3 190 6-196 1118-1381(1630)
3 3mkq_A Coatomer beta'-subunit; 99.5 3.7E-13 1.3E-17 121.9 17.8 158 9-180 632-802 (814)
4 1b89_A Protein (clathrin heavy 99.3 2.9E-11 1E-15 104.1 15.6 192 5-198 73-310 (449)
5 3mkq_A Coatomer beta'-subunit; 99.3 3.8E-11 1.3E-15 108.7 15.5 116 7-123 682-802 (814)
6 3mkq_B Coatomer subunit alpha; 99.1 1.7E-09 5.9E-14 82.0 14.5 130 20-153 6-138 (177)
7 1b89_A Protein (clathrin heavy 99.0 2.1E-08 7.1E-13 86.4 18.3 187 6-197 135-370 (449)
8 1qqe_A Vesicular transport pro 99.0 2.1E-08 7.1E-13 81.0 17.5 72 8-92 32-114 (292)
9 2xpi_A Anaphase-promoting comp 99.0 8.9E-08 3E-12 83.4 20.4 82 47-129 372-466 (597)
10 1w3b_A UDP-N-acetylglucosamine 99.0 7E-08 2.4E-12 79.9 18.2 28 47-74 134-161 (388)
11 2xpi_A Anaphase-promoting comp 98.9 3.7E-08 1.3E-12 85.8 17.0 123 7-130 131-331 (597)
12 2ifu_A Gamma-SNAP; membrane fu 98.9 7.9E-08 2.7E-12 78.1 17.2 64 49-129 77-140 (307)
13 2pl2_A Hypothetical conserved 98.9 2.1E-07 7.2E-12 71.8 17.2 161 11-180 10-204 (217)
14 3mkr_A Coatomer subunit epsilo 98.9 5.2E-07 1.8E-11 73.1 20.0 172 7-180 13-219 (291)
15 3uq3_A Heat shock protein STI1 98.9 2.6E-08 8.8E-13 77.0 11.6 153 27-180 46-226 (258)
16 1w3b_A UDP-N-acetylglucosamine 98.8 3.1E-07 1E-11 76.0 18.3 104 26-130 74-195 (388)
17 3hym_B Cell division cycle pro 98.8 1.1E-06 3.7E-11 70.2 21.0 155 25-180 62-255 (330)
18 3vtx_A MAMA; tetratricopeptide 98.8 5.3E-07 1.8E-11 66.8 17.2 140 9-180 8-160 (184)
19 1xnf_A Lipoprotein NLPI; TPR, 98.8 2.2E-07 7.4E-12 72.6 15.6 164 7-180 19-234 (275)
20 3ieg_A DNAJ homolog subfamily 98.8 6.4E-07 2.2E-11 72.1 18.8 26 49-74 72-97 (359)
21 4eqf_A PEX5-related protein; a 98.8 1.3E-07 4.5E-12 77.5 14.6 153 27-180 107-300 (365)
22 2y4t_A DNAJ homolog subfamily 98.8 5.9E-07 2E-11 75.3 18.6 18 163-180 297-314 (450)
23 2y4t_A DNAJ homolog subfamily 98.8 8.6E-07 3E-11 74.3 19.5 123 7-130 40-203 (450)
24 1ouv_A Conserved hypothetical 98.8 1.3E-06 4.5E-11 68.8 18.7 148 32-180 55-241 (273)
25 3ieg_A DNAJ homolog subfamily 98.7 1.8E-06 6.3E-11 69.4 18.6 161 11-180 8-207 (359)
26 1fch_A Peroxisomal targeting s 98.7 1.6E-06 5.5E-11 70.5 17.6 52 47-99 97-156 (368)
27 4eqf_A PEX5-related protein; a 98.7 1.5E-06 5.3E-11 71.0 17.3 161 11-180 70-266 (365)
28 3uq3_A Heat shock protein STI1 98.7 1.1E-06 3.9E-11 67.5 15.7 155 9-180 8-192 (258)
29 3cv0_A Peroxisome targeting si 98.7 1.4E-06 4.7E-11 69.4 16.3 154 26-180 62-259 (327)
30 3fp2_A TPR repeat-containing p 98.7 2.5E-06 8.6E-11 73.0 18.8 166 14-180 251-481 (537)
31 2pl2_A Hypothetical conserved 98.7 7.3E-07 2.5E-11 68.7 13.8 131 47-180 4-170 (217)
32 3vtx_A MAMA; tetratricopeptide 98.6 1.2E-06 4E-11 64.9 14.4 124 47-194 4-165 (184)
33 1ouv_A Conserved hypothetical 98.6 1.4E-05 4.6E-10 62.9 21.4 159 11-180 11-205 (273)
34 2q7f_A YRRB protein; TPR, prot 98.6 1.1E-06 3.9E-11 67.1 14.7 133 47-180 56-212 (243)
35 2ho1_A Type 4 fimbrial biogene 98.6 1.6E-06 5.4E-11 67.0 15.4 158 14-180 45-228 (252)
36 1fch_A Peroxisomal targeting s 98.6 8.5E-07 2.9E-11 72.2 14.3 154 26-180 105-304 (368)
37 3mkq_B Coatomer subunit alpha; 98.6 2.2E-06 7.5E-11 64.9 14.6 100 8-108 36-135 (177)
38 2gw1_A Mitochondrial precursor 98.6 3.8E-06 1.3E-10 71.2 17.8 68 7-74 20-99 (514)
39 3ro3_A PINS homolog, G-protein 98.6 8.8E-06 3E-10 57.5 17.0 146 10-196 13-162 (164)
40 2ho1_A Type 4 fimbrial biogene 98.6 1.2E-05 4E-10 62.0 18.4 124 7-131 51-202 (252)
41 3hym_B Cell division cycle pro 98.6 9.2E-06 3.2E-10 64.6 18.1 153 27-180 98-289 (330)
42 3as5_A MAMA; tetratricopeptide 98.6 4.6E-06 1.6E-10 60.5 15.0 138 11-180 13-163 (186)
43 2vq2_A PILW, putative fimbrial 98.5 1.1E-05 3.7E-10 60.6 17.2 161 11-180 13-201 (225)
44 4gyw_A UDP-N-acetylglucosamine 98.5 3.6E-06 1.2E-10 76.7 16.5 137 12-180 15-164 (723)
45 3fp2_A TPR repeat-containing p 98.5 3.1E-06 1.1E-10 72.4 14.8 47 26-72 66-117 (537)
46 4a1s_A PINS, partner of inscut 98.5 6.6E-06 2.3E-10 68.1 15.7 81 49-130 127-249 (411)
47 3ulq_A Response regulator aspa 98.5 6.2E-06 2.1E-10 68.3 15.5 125 49-180 185-358 (383)
48 2xm6_A Protein corresponding t 98.5 4.6E-05 1.6E-09 65.4 21.4 83 47-130 218-322 (490)
49 2gw1_A Mitochondrial precursor 98.5 1.9E-05 6.4E-10 66.9 18.5 80 10-99 10-97 (514)
50 4gcn_A Protein STI-1; structur 98.4 1.2E-05 4.2E-10 56.6 14.6 97 11-130 13-109 (127)
51 3ulq_A Response regulator aspa 98.4 3.2E-05 1.1E-09 63.9 19.0 145 12-180 109-283 (383)
52 3q15_A PSP28, response regulat 98.4 7.1E-06 2.4E-10 68.0 14.6 173 7-180 115-355 (378)
53 2ifu_A Gamma-SNAP; membrane fu 98.4 7.8E-06 2.7E-10 66.2 14.3 65 50-131 118-182 (307)
54 3gw4_A Uncharacterized protein 98.4 7.3E-05 2.5E-09 55.4 18.8 112 49-195 67-179 (203)
55 3cv0_A Peroxisome targeting si 98.4 1.2E-05 4.2E-10 63.8 15.2 21 160-180 285-305 (327)
56 3qky_A Outer membrane assembly 98.4 3.4E-06 1.2E-10 66.2 11.7 162 13-192 22-217 (261)
57 1qqe_A Vesicular transport pro 98.4 4.1E-05 1.4E-09 61.4 18.4 50 26-75 84-145 (292)
58 3nf1_A KLC 1, kinesin light ch 98.4 9.7E-06 3.3E-10 64.0 14.0 82 49-131 112-222 (311)
59 4abn_A Tetratricopeptide repea 98.4 2E-06 6.8E-11 74.3 10.5 134 46-180 135-311 (474)
60 2xm6_A Protein corresponding t 98.4 0.0001 3.6E-09 63.1 21.2 97 32-129 92-212 (490)
61 3q15_A PSP28, response regulat 98.4 5E-05 1.7E-09 62.8 18.6 143 13-180 108-280 (378)
62 3mkr_A Coatomer subunit epsilo 98.4 3.8E-05 1.3E-09 61.9 17.4 173 6-180 47-253 (291)
63 3sf4_A G-protein-signaling mod 98.4 1.4E-05 4.7E-10 65.5 14.9 153 27-180 95-326 (406)
64 4i17_A Hypothetical protein; T 98.4 2.6E-05 8.9E-10 59.6 15.5 114 11-132 12-145 (228)
65 3edt_B KLC 2, kinesin light ch 98.3 2.9E-06 9.8E-11 65.9 9.8 125 7-132 22-197 (283)
66 3u4t_A TPR repeat-containing p 98.3 6.3E-05 2.2E-09 58.4 17.4 123 7-130 17-168 (272)
67 4ga2_A E3 SUMO-protein ligase 98.3 1.2E-06 4.1E-11 63.8 6.9 52 15-74 6-57 (150)
68 3u4t_A TPR repeat-containing p 98.3 4.6E-05 1.6E-09 59.2 16.5 170 12-193 9-209 (272)
69 4ga2_A E3 SUMO-protein ligase 98.3 2.1E-05 7.3E-10 57.0 13.4 126 7-176 11-149 (150)
70 3ro2_A PINS homolog, G-protein 98.3 8E-05 2.8E-09 58.7 17.5 104 27-131 91-250 (338)
71 3n71_A Histone lysine methyltr 98.3 4.8E-06 1.6E-10 72.7 10.9 133 14-180 317-454 (490)
72 3ro2_A PINS homolog, G-protein 98.3 4.1E-05 1.4E-09 60.5 15.6 173 7-180 19-282 (338)
73 3u3w_A Transcriptional activat 98.3 8.3E-05 2.8E-09 59.4 17.3 57 107-180 199-256 (293)
74 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.9E-05 9.9E-10 58.4 13.9 127 13-180 13-140 (213)
75 4gco_A Protein STI-1; structur 98.3 3.2E-05 1.1E-09 54.5 13.0 90 11-130 18-107 (126)
76 3as5_A MAMA; tetratricopeptide 98.3 8.1E-05 2.8E-09 53.7 15.5 123 7-130 22-170 (186)
77 2fo7_A Synthetic consensus TPR 98.3 8.4E-05 2.9E-09 50.6 14.8 111 11-130 6-129 (136)
78 2vq2_A PILW, putative fimbrial 98.2 6.9E-05 2.4E-09 56.1 15.3 124 6-130 21-173 (225)
79 2qfc_A PLCR protein; TPR, HTH, 98.2 7.7E-05 2.6E-09 59.6 16.2 163 10-194 79-268 (293)
80 3edt_B KLC 2, kinesin light ch 98.2 1E-05 3.4E-10 62.7 10.4 57 16-74 11-69 (283)
81 2r5s_A Uncharacterized protein 98.2 0.0001 3.4E-09 54.4 15.4 140 11-180 11-163 (176)
82 4a1s_A PINS, partner of inscut 98.2 4.9E-05 1.7E-09 62.8 14.7 114 49-180 224-362 (411)
83 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00012 3.9E-09 56.8 16.0 125 7-132 57-205 (275)
84 4gyw_A UDP-N-acetylglucosamine 98.2 2.8E-05 9.7E-10 70.9 14.0 110 47-180 8-130 (723)
85 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00011 3.9E-09 56.4 15.2 162 3-180 2-203 (225)
86 3gyz_A Chaperone protein IPGC; 98.1 3.4E-05 1.2E-09 56.5 11.4 62 47-130 69-130 (151)
87 3gw4_A Uncharacterized protein 98.1 0.00031 1.1E-08 51.9 16.5 67 47-129 25-91 (203)
88 3sf4_A G-protein-signaling mod 98.1 0.00015 5.1E-09 59.2 15.9 49 26-74 194-253 (406)
89 4g1t_A Interferon-induced prot 98.1 5.8E-05 2E-09 63.6 13.1 70 6-75 64-165 (472)
90 3upv_A Heat shock protein STI1 98.0 0.00018 6.3E-09 49.6 13.0 93 10-132 8-100 (126)
91 2vyi_A SGTA protein; chaperone 98.0 0.00024 8.1E-09 48.2 13.3 114 11-177 17-130 (131)
92 2vgx_A Chaperone SYCD; alterna 98.0 0.00011 3.7E-09 53.1 11.6 88 13-130 28-115 (148)
93 3urz_A Uncharacterized protein 98.0 5E-05 1.7E-09 57.8 10.1 95 14-130 12-114 (208)
94 3rjv_A Putative SEL1 repeat pr 98.0 0.00043 1.5E-08 52.8 15.4 105 14-130 26-155 (212)
95 2q7f_A YRRB protein; TPR, prot 98.0 0.00021 7.3E-09 54.2 13.4 123 7-130 37-185 (243)
96 2xcb_A PCRH, regulatory protei 98.0 0.00014 4.8E-09 51.7 11.5 88 13-130 25-112 (142)
97 2vsy_A XCC0866; transferase, g 98.0 0.00012 4.2E-09 63.9 13.2 110 47-180 22-147 (568)
98 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00014 4.7E-09 52.9 11.2 91 10-130 15-105 (164)
99 3ro3_A PINS homolog, G-protein 97.9 0.00052 1.8E-08 48.1 13.9 90 25-130 55-155 (164)
100 4g1t_A Interferon-induced prot 97.9 0.0004 1.4E-08 58.4 15.4 168 12-180 57-266 (472)
101 2fo7_A Synthetic consensus TPR 97.9 0.0003 1E-08 47.7 12.2 107 50-180 3-122 (136)
102 2ond_A Cleavage stimulation fa 97.9 0.00069 2.4E-08 54.4 16.0 153 9-180 80-260 (308)
103 1elr_A TPR2A-domain of HOP; HO 97.9 0.0004 1.4E-08 47.1 12.4 98 10-130 8-105 (131)
104 1a17_A Serine/threonine protei 97.9 0.00027 9.2E-09 50.4 11.6 89 12-130 19-107 (166)
105 3gyz_A Chaperone protein IPGC; 97.9 8.1E-05 2.8E-09 54.5 8.8 89 47-180 35-123 (151)
106 1p5q_A FKBP52, FK506-binding p 97.9 0.00031 1.1E-08 57.7 13.2 92 11-130 152-256 (336)
107 3qou_A Protein YBBN; thioredox 97.9 0.00032 1.1E-08 56.1 13.0 137 12-180 123-274 (287)
108 3rkv_A Putative peptidylprolyl 97.9 0.00041 1.4E-08 50.1 12.5 101 8-130 13-123 (162)
109 4abn_A Tetratricopeptide repea 97.9 9.9E-05 3.4E-09 63.6 10.6 124 6-130 115-284 (474)
110 2h6f_A Protein farnesyltransfe 97.8 0.00037 1.3E-08 58.6 13.9 111 11-130 102-226 (382)
111 3nf1_A KLC 1, kinesin light ch 97.8 0.00013 4.5E-09 57.3 10.3 74 26-100 118-220 (311)
112 3qww_A SET and MYND domain-con 97.8 3.5E-05 1.2E-09 66.2 7.4 98 19-132 311-410 (433)
113 4i17_A Hypothetical protein; T 97.8 0.00026 8.8E-09 53.9 11.6 84 46-130 5-102 (228)
114 2pm7_A Protein WEB1, protein t 97.8 0.0017 5.9E-08 55.1 17.6 128 10-140 147-284 (399)
115 1elw_A TPR1-domain of HOP; HOP 97.8 0.00035 1.2E-08 46.5 10.9 90 11-130 9-98 (118)
116 3q49_B STIP1 homology and U bo 97.8 0.0007 2.4E-08 46.9 12.7 92 10-131 13-104 (137)
117 1hz4_A MALT regulatory protein 97.8 0.0042 1.4E-07 50.6 19.3 79 51-130 96-200 (373)
118 1na0_A Designed protein CTPR3; 97.8 0.0016 5.6E-08 43.5 14.2 90 11-130 14-103 (125)
119 1hxi_A PEX5, peroxisome target 97.8 0.00027 9.1E-09 49.2 10.3 88 13-130 24-111 (121)
120 4gco_A Protein STI-1; structur 97.8 0.00033 1.1E-08 49.2 10.8 88 48-180 13-100 (126)
121 2ond_A Cleavage stimulation fa 97.8 0.00078 2.7E-08 54.1 14.4 28 47-74 98-125 (308)
122 2xev_A YBGF; tetratricopeptide 97.8 0.00047 1.6E-08 47.3 11.3 92 12-130 8-102 (129)
123 4b4t_Q 26S proteasome regulato 97.7 0.00081 2.8E-08 55.9 14.2 159 8-180 7-194 (434)
124 2pzi_A Probable serine/threoni 97.7 0.00035 1.2E-08 62.9 12.6 125 6-132 404-562 (681)
125 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00074 2.5E-08 50.4 12.4 93 10-130 42-148 (198)
126 4gcn_A Protein STI-1; structur 97.7 0.0011 3.8E-08 46.3 12.5 94 49-180 9-102 (127)
127 2lni_A Stress-induced-phosphop 97.7 0.00038 1.3E-08 47.6 9.8 91 10-130 20-110 (133)
128 2dba_A Smooth muscle cell asso 97.7 0.0012 4E-08 46.0 12.4 90 10-130 32-125 (148)
129 3u3w_A Transcriptional activat 97.7 0.00096 3.3E-08 53.1 12.9 82 49-152 197-279 (293)
130 1klx_A Cysteine rich protein B 97.6 0.0013 4.5E-08 46.8 12.2 106 2-131 4-124 (138)
131 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.0014 4.9E-08 48.8 12.8 119 6-132 19-149 (213)
132 2hr2_A Hypothetical protein; a 97.6 0.00099 3.4E-08 49.4 11.5 98 12-131 17-129 (159)
133 3upv_A Heat shock protein STI1 97.6 0.00089 3E-08 46.0 10.8 88 48-180 4-91 (126)
134 3qky_A Outer membrane assembly 97.6 0.0011 3.8E-08 51.5 12.4 118 6-130 28-174 (261)
135 2kck_A TPR repeat; tetratricop 97.6 0.00032 1.1E-08 46.4 8.0 92 11-130 11-103 (112)
136 2vsy_A XCC0866; transferase, g 97.6 0.0011 3.8E-08 57.8 13.5 123 7-130 3-154 (568)
137 2vgx_A Chaperone SYCD; alterna 97.6 0.00054 1.8E-08 49.4 9.7 89 47-180 20-108 (148)
138 1hz4_A MALT regulatory protein 97.6 0.0071 2.4E-07 49.2 17.6 55 13-74 21-79 (373)
139 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0011 3.8E-08 56.8 12.9 94 11-132 273-379 (457)
140 3qwp_A SET and MYND domain-con 97.6 0.00012 4E-09 62.8 6.7 98 18-132 299-399 (429)
141 2xcb_A PCRH, regulatory protei 97.6 0.00066 2.3E-08 48.1 9.7 89 47-180 17-105 (142)
142 2r5s_A Uncharacterized protein 97.6 0.0017 5.7E-08 47.6 12.1 108 50-180 8-127 (176)
143 3q49_B STIP1 homology and U bo 97.5 0.0013 4.6E-08 45.4 10.9 89 47-180 8-96 (137)
144 1a17_A Serine/threonine protei 97.5 0.0012 4.1E-08 46.9 10.9 27 48-74 13-39 (166)
145 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0011 3.8E-08 47.8 10.8 89 47-180 10-98 (164)
146 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.0028 9.7E-08 48.4 13.5 52 47-99 3-65 (225)
147 4b4t_Q 26S proteasome regulato 97.5 0.0017 5.8E-08 53.9 13.1 141 23-180 59-235 (434)
148 3n71_A Histone lysine methyltr 97.5 0.00034 1.2E-08 60.9 8.6 110 6-130 322-461 (490)
149 2e2e_A Formate-dependent nitri 97.5 0.00076 2.6E-08 49.2 9.4 49 18-74 22-70 (177)
150 3rjv_A Putative SEL1 repeat pr 97.5 0.0026 8.9E-08 48.4 12.6 86 46-133 16-118 (212)
151 2qfc_A PLCR protein; TPR, HTH, 97.5 0.00099 3.4E-08 53.0 10.6 97 27-145 163-272 (293)
152 2c2l_A CHIP, carboxy terminus 97.5 0.0015 5.1E-08 52.1 11.6 93 10-132 8-100 (281)
153 2pzi_A Probable serine/threoni 97.5 0.0017 5.7E-08 58.5 13.0 56 17-74 402-459 (681)
154 3e4b_A ALGK; tetratricopeptide 97.4 0.016 5.5E-07 49.3 18.1 132 47-180 212-377 (452)
155 1elw_A TPR1-domain of HOP; HOP 97.4 0.002 6.7E-08 42.7 10.0 88 48-180 4-91 (118)
156 3k9i_A BH0479 protein; putativ 97.4 0.0003 1E-08 48.2 6.0 84 19-130 3-87 (117)
157 4f3v_A ESX-1 secretion system 97.4 0.0015 5.2E-08 52.9 10.3 111 48-180 102-227 (282)
158 4f3v_A ESX-1 secretion system 97.4 0.0012 4.1E-08 53.5 9.7 111 12-131 108-235 (282)
159 3urz_A Uncharacterized protein 97.3 0.0027 9.2E-08 48.0 11.2 68 7-74 18-114 (208)
160 2e2e_A Formate-dependent nitri 97.3 0.0029 9.9E-08 46.0 10.9 83 26-130 51-141 (177)
161 1ihg_A Cyclophilin 40; ppiase 97.3 0.0022 7.6E-08 53.5 11.3 108 49-180 224-360 (370)
162 3ma5_A Tetratricopeptide repea 97.3 0.004 1.4E-07 41.4 10.3 74 46-147 5-78 (100)
163 2l6j_A TPR repeat-containing p 97.3 0.002 7E-08 42.6 8.8 89 48-180 4-97 (111)
164 3qou_A Protein YBBN; thioredox 97.3 0.0081 2.8E-07 47.8 13.8 111 47-180 116-238 (287)
165 2kck_A TPR repeat; tetratricop 97.3 0.0015 5.1E-08 43.0 7.9 89 47-180 5-96 (112)
166 2xev_A YBGF; tetratricopeptide 97.3 0.0047 1.6E-07 42.1 10.7 89 51-180 5-95 (129)
167 2vyi_A SGTA protein; chaperone 97.3 0.005 1.7E-07 41.3 10.8 89 47-180 11-99 (131)
168 1na0_A Designed protein CTPR3; 97.3 0.0053 1.8E-07 40.8 10.8 88 48-180 9-96 (125)
169 3rkv_A Putative peptidylprolyl 97.2 0.0037 1.3E-07 44.9 10.4 104 47-180 10-116 (162)
170 1elr_A TPR2A-domain of HOP; HO 97.2 0.0033 1.1E-07 42.4 9.1 95 48-180 4-98 (131)
171 1wao_1 Serine/threonine protei 97.2 0.00073 2.5E-08 58.3 7.0 86 15-130 15-100 (477)
172 2c2l_A CHIP, carboxy terminus 97.1 0.0079 2.7E-07 47.8 12.3 89 47-180 3-91 (281)
173 2ooe_A Cleavage stimulation fa 97.1 0.014 4.9E-07 50.2 14.9 120 11-130 304-451 (530)
174 1hxi_A PEX5, peroxisome target 97.1 0.0031 1E-07 43.6 8.7 85 51-180 20-104 (121)
175 3ma5_A Tetratricopeptide repea 97.1 0.0068 2.3E-07 40.2 10.0 68 11-93 12-79 (100)
176 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0011 3.7E-08 49.5 6.2 95 28-130 13-114 (198)
177 2ooe_A Cleavage stimulation fa 97.1 0.049 1.7E-06 46.8 17.5 134 46-180 270-444 (530)
178 2lni_A Stress-induced-phosphop 97.1 0.0035 1.2E-07 42.5 8.4 89 47-180 15-103 (133)
179 1p5q_A FKBP52, FK506-binding p 97.1 0.0027 9.2E-08 52.0 9.0 124 47-180 146-283 (336)
180 2h6f_A Protein farnesyltransfe 97.0 0.0094 3.2E-07 50.0 12.5 123 7-130 111-266 (382)
181 1na3_A Designed protein CTPR2; 97.0 0.0097 3.3E-07 37.7 9.9 61 48-130 9-69 (91)
182 4g26_A Pentatricopeptide repea 97.0 0.025 8.6E-07 49.1 14.7 44 122-174 180-223 (501)
183 3qww_A SET and MYND domain-con 96.9 0.0068 2.3E-07 51.9 10.5 101 59-193 309-412 (433)
184 4g26_A Pentatricopeptide repea 96.9 0.025 8.6E-07 49.1 14.2 85 47-132 104-203 (501)
185 3mv2_B Coatomer subunit epsilo 96.9 0.022 7.6E-07 46.6 12.9 53 47-100 99-161 (310)
186 2qx5_A Nucleoporin NIC96; mRNA 96.8 0.06 2E-06 48.5 16.4 140 49-195 358-563 (661)
187 2kat_A Uncharacterized protein 96.8 0.015 5.1E-07 39.1 9.7 63 46-130 17-79 (115)
188 2dba_A Smooth muscle cell asso 96.8 0.0072 2.5E-07 41.8 8.1 92 47-180 27-118 (148)
189 1klx_A Cysteine rich protein B 96.7 0.019 6.5E-07 40.6 10.2 100 20-180 9-116 (138)
190 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.011 3.8E-07 50.5 10.2 74 48-130 268-343 (457)
191 3e4b_A ALGK; tetratricopeptide 96.7 0.078 2.7E-06 45.0 15.5 132 47-180 175-341 (452)
192 2hr2_A Hypothetical protein; a 96.6 0.064 2.2E-06 39.5 12.7 106 48-180 11-121 (159)
193 3k9i_A BH0479 protein; putativ 96.6 0.0041 1.4E-07 42.3 5.6 69 6-74 3-87 (117)
194 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0067 2.3E-07 49.7 7.8 83 50-133 181-293 (338)
195 2v5f_A Prolyl 4-hydroxylase su 96.6 0.017 5.8E-07 38.9 8.5 70 47-131 4-73 (104)
196 1ihg_A Cyclophilin 40; ppiase 96.5 0.03 1E-06 46.5 11.7 114 9-123 226-360 (370)
197 2pm7_A Protein WEB1, protein t 96.5 0.06 2E-06 45.6 13.2 129 63-194 145-285 (399)
198 1wao_1 Serine/threonine protei 96.4 0.0075 2.6E-07 51.9 7.2 103 6-130 19-136 (477)
199 3lvg_A Clathrin heavy chain 1; 96.2 8.5E-07 2.9E-11 76.9 -18.4 166 12-180 17-218 (624)
200 2kat_A Uncharacterized protein 96.1 0.034 1.2E-06 37.2 7.9 60 12-85 25-84 (115)
201 2kc7_A BFR218_protein; tetratr 96.1 0.027 9.1E-07 36.5 7.1 54 13-74 7-61 (99)
202 3mv2_B Coatomer subunit epsilo 96.0 0.11 3.8E-06 42.4 12.1 91 7-98 114-234 (310)
203 2l6j_A TPR repeat-containing p 96.0 0.021 7E-07 37.5 6.3 56 11-74 9-64 (111)
204 1zu2_A Mitochondrial import re 95.9 0.018 6.2E-07 42.5 6.3 66 44-131 32-118 (158)
205 1na3_A Designed protein CTPR2; 95.9 0.029 1E-06 35.3 6.7 56 11-74 14-69 (91)
206 3qwp_A SET and MYND domain-con 95.5 0.031 1E-06 47.7 7.0 79 6-90 300-407 (429)
207 2kc7_A BFR218_protein; tetratr 95.4 0.071 2.4E-06 34.4 7.3 56 53-130 5-61 (99)
208 2v5f_A Prolyl 4-hydroxylase su 94.6 0.16 5.4E-06 33.9 7.3 64 4-74 4-72 (104)
209 3mzk_B Protein transport prote 94.5 1.2 4.1E-05 38.1 14.0 121 11-132 155-306 (441)
210 2if4_A ATFKBP42; FKBP-like, al 94.1 0.11 3.7E-06 42.4 6.5 89 11-101 184-290 (338)
211 3lvg_A Clathrin heavy chain 1; 93.6 0.059 2E-06 47.1 4.1 119 27-147 418-542 (624)
212 2qx5_A Nucleoporin NIC96; mRNA 93.5 0.71 2.4E-05 41.5 11.1 38 49-86 444-481 (661)
213 3ffl_A Anaphase-promoting comp 93.3 1 3.5E-05 33.3 10.0 31 49-85 64-94 (167)
214 1zu2_A Mitochondrial import re 92.8 0.21 7.2E-06 36.7 5.6 48 46-100 78-136 (158)
215 2wpv_A GET4, UPF0363 protein Y 92.7 2.8 9.6E-05 34.1 12.7 24 157-180 130-153 (312)
216 4ady_A RPN2, 26S proteasome re 92.1 2.2 7.6E-05 39.9 12.7 108 65-173 149-274 (963)
217 3bee_A Putative YFRE protein; 91.7 1.7 5.7E-05 28.4 8.6 63 46-130 4-69 (93)
218 3txn_A 26S proteasome regulato 91.7 5.3 0.00018 33.5 13.8 119 11-130 24-207 (394)
219 2wpv_A GET4, UPF0363 protein Y 91.3 5.1 0.00017 32.5 15.4 110 12-131 26-161 (312)
220 4e6h_A MRNA 3'-END-processing 91.1 6.1 0.00021 35.5 14.3 56 11-74 348-404 (679)
221 3qil_A Clathrin heavy chain 1; 90.0 0.0073 2.5E-07 42.4 -4.6 76 71-147 16-94 (125)
222 4b4t_R RPN7, 26S proteasome re 89.2 2 7E-05 36.2 9.1 81 49-130 132-234 (429)
223 4fhn_B Nucleoporin NUP120; pro 89.1 2.6 8.8E-05 40.2 10.5 158 13-180 849-1039(1139)
224 1wy6_A Hypothetical protein ST 88.3 5.7 0.00019 28.7 9.4 120 9-130 11-151 (172)
225 4e6h_A MRNA 3'-END-processing 87.8 4.8 0.00016 36.2 10.9 133 47-180 342-523 (679)
226 4ady_A RPN2, 26S proteasome re 87.6 5.9 0.0002 37.1 11.6 107 10-117 149-275 (963)
227 3lpz_A GET4 (YOR164C homolog); 87.2 5.8 0.0002 32.6 10.2 24 157-180 132-155 (336)
228 1wy6_A Hypothetical protein ST 86.6 3.8 0.00013 29.6 7.6 64 117-180 74-144 (172)
229 3spa_A Mtrpol, DNA-directed RN 86.5 3.4 0.00012 39.3 9.3 77 22-99 130-225 (1134)
230 3bee_A Putative YFRE protein; 85.5 2 6.9E-05 28.0 5.6 30 45-74 40-69 (93)
231 3u64_A Protein TP_0956; tetrat 84.0 4.7 0.00016 32.6 8.0 51 108-180 203-259 (301)
232 3mzk_B Protein transport prote 83.5 20 0.00068 30.5 14.9 114 65-180 154-297 (441)
233 1qsa_A Protein (soluble lytic 82.7 25 0.00087 31.1 13.7 107 27-134 293-443 (618)
234 3u64_A Protein TP_0956; tetrat 81.8 4.7 0.00016 32.6 7.2 63 47-130 198-266 (301)
235 3ax2_A Mitochondrial import re 81.6 4.4 0.00015 25.6 5.6 49 53-111 22-70 (73)
236 1om2_A Protein (mitochondrial 80.0 8.3 0.00028 25.6 6.7 51 53-113 25-75 (95)
237 4b4t_P 26S proteasome regulato 78.8 16 0.00056 30.8 10.1 81 49-130 138-244 (445)
238 3qil_A Clathrin heavy chain 1; 78.1 0.087 3E-06 36.9 -3.6 49 127-178 16-65 (125)
239 3lpz_A GET4 (YOR164C homolog); 77.3 28 0.00097 28.4 16.6 107 16-132 32-164 (336)
240 4b4t_R RPN7, 26S proteasome re 75.3 2.3 7.9E-05 35.9 3.8 19 67-85 137-155 (429)
241 4a1g_A Mitotic checkpoint seri 73.3 4.2 0.00014 29.5 4.2 28 47-74 100-127 (152)
242 4fhn_B Nucleoporin NUP120; pro 72.7 7.7 0.00026 36.9 7.0 126 32-180 825-957 (1139)
243 3ly7_A Transcriptional activat 72.2 35 0.0012 28.3 10.1 26 107-132 313-338 (372)
244 4h7y_A Dual specificity protei 71.6 25 0.00085 25.6 7.9 94 11-130 18-120 (161)
245 1wfd_A Hypothetical protein 15 71.6 18 0.00062 23.6 7.8 28 52-85 19-46 (93)
246 4b4t_P 26S proteasome regulato 71.1 28 0.00094 29.4 9.5 63 12-74 143-244 (445)
247 3ly7_A Transcriptional activat 71.1 23 0.00077 29.5 8.7 28 47-74 309-336 (372)
248 2wvi_A Mitotic checkpoint seri 69.3 5.8 0.0002 29.1 4.2 28 47-74 95-122 (164)
249 3esl_A Checkpoint serine/threo 68.3 5.9 0.0002 30.1 4.2 28 47-74 114-141 (202)
250 4h7y_A Dual specificity protei 67.2 30 0.001 25.1 7.6 98 44-180 9-113 (161)
251 3spa_A Mtrpol, DNA-directed RN 67.2 27 0.00091 33.3 9.0 52 77-140 130-188 (1134)
252 4aez_C MAD3, mitotic spindle c 66.4 6.7 0.00023 30.3 4.2 28 47-74 149-176 (223)
253 2v6x_A Vacuolar protein sortin 65.3 11 0.00037 24.1 4.6 28 52-85 17-44 (85)
254 4a5x_A MITD1, MIT domain-conta 65.3 11 0.00038 24.3 4.6 28 52-85 20-47 (86)
255 4gq2_M Nucleoporin NUP120; bet 64.1 19 0.00064 33.7 7.5 101 29-143 820-923 (950)
256 2cpt_A SKD1 protein, vacuolar 61.4 11 0.00039 25.8 4.3 27 53-85 23-49 (117)
257 2ekk_A UBA domain from E3 ubiq 61.3 7.1 0.00024 22.0 2.7 26 1-30 19-44 (47)
258 3txn_A 26S proteasome regulato 61.2 71 0.0024 26.6 13.0 54 122-180 104-158 (394)
259 2crb_A Nuclear receptor bindin 60.6 13 0.00046 24.5 4.2 26 50-75 17-42 (97)
260 3f3f_C Nucleoporin NUP85; stru 59.0 4.5 0.00016 35.6 2.3 76 60-135 478-567 (570)
261 2wb7_A PT26-6P; extra chromoso 58.6 22 0.00075 30.7 6.3 86 7-100 424-512 (526)
262 2crb_A Nuclear receptor bindin 58.5 5 0.00017 26.5 1.9 31 109-139 20-51 (97)
263 2uy1_A Cleavage stimulation fa 58.3 75 0.0026 26.9 9.9 124 9-132 216-382 (493)
264 3ffl_A Anaphase-promoting comp 57.6 53 0.0018 24.0 13.1 69 106-180 65-141 (167)
265 2w2u_A Hypothetical P60 katani 56.5 20 0.00068 22.9 4.6 22 53-74 24-45 (83)
266 2v6y_A AAA family ATPase, P60 56.0 20 0.0007 22.8 4.6 22 53-74 16-37 (83)
267 1z96_A DNA-damage, UBA-domain 55.5 19 0.00063 19.1 3.8 25 1-29 14-39 (40)
268 2uy1_A Cleavage stimulation fa 55.1 96 0.0033 26.2 11.6 113 9-131 289-411 (493)
269 1pc2_A Mitochondria fission pr 54.5 26 0.0009 25.1 5.4 28 47-74 70-97 (152)
270 1pgy_A SWA2P; UBA, ubiquitin, 53.0 27 0.00092 19.6 4.0 33 53-85 10-42 (47)
271 2uwj_G Type III export protein 51.8 23 0.00077 24.0 4.2 33 161-194 22-63 (115)
272 1pc2_A Mitochondria fission pr 51.2 36 0.0012 24.4 5.7 65 46-130 30-97 (152)
273 3i4r_B Nuclear pore complex pr 50.1 9.8 0.00034 34.1 3.0 66 123-193 334-406 (644)
274 3dra_A Protein farnesyltransfe 50.1 94 0.0032 24.6 9.2 27 103-129 257-283 (306)
275 2ff4_A Probable regulatory pro 50.1 42 0.0015 27.5 6.8 26 49-74 206-231 (388)
276 2yin_A DOCK2, dedicator of cyt 49.8 1.2E+02 0.004 25.6 10.4 17 55-71 42-58 (436)
277 2g3q_A Protein YBL047C; endocy 49.6 27 0.00091 19.0 3.8 26 1-30 14-40 (43)
278 2vxg_A LD41624, GE-1, CG6181-P 48.2 19 0.00065 25.5 3.7 54 118-171 1-64 (139)
279 1ify_A HHR23A, UV excision rep 47.1 19 0.00064 20.5 2.9 26 1-30 18-44 (49)
280 1vg5_A RSGI RUH-014, rhomboid 44.9 30 0.001 21.6 3.9 27 1-31 39-66 (73)
281 3ph0_C ASCG; type III secretio 44.8 21 0.00072 21.3 2.9 29 162-190 23-60 (61)
282 2jy5_A Ubiquilin-1; UBA, alter 43.5 32 0.0011 19.8 3.6 21 9-29 27-48 (52)
283 2ff4_A Probable regulatory pro 42.9 1.2E+02 0.0042 24.7 8.6 46 87-132 183-233 (388)
284 3f3f_C Nucleoporin NUP85; stru 42.8 14 0.00047 32.6 2.7 33 47-79 535-567 (570)
285 2pmr_A Uncharacterized protein 40.9 25 0.00084 22.9 3.1 30 111-140 46-75 (87)
286 4gq2_M Nucleoporin NUP120; bet 40.4 65 0.0022 30.0 7.0 63 12-74 846-923 (950)
287 2wm9_A Dedicator of cytokinesi 39.8 35 0.0012 28.7 4.7 23 63-85 90-112 (428)
288 2wb7_A PT26-6P; extra chromoso 39.4 49 0.0017 28.7 5.4 37 109-146 479-516 (526)
289 1whc_A RSGI RUH-027, UBA/UBX 3 37.5 50 0.0017 19.8 4.0 27 1-31 19-47 (64)
290 4a1g_A Mitotic checkpoint seri 37.0 38 0.0013 24.3 3.9 31 2-32 97-127 (152)
291 2pmr_A Uncharacterized protein 33.6 49 0.0017 21.4 3.6 31 55-85 46-76 (87)
292 2wvi_A Mitotic checkpoint seri 33.5 46 0.0016 24.2 3.9 30 3-32 93-122 (164)
293 3esl_A Checkpoint serine/threo 32.2 48 0.0016 25.0 3.9 31 2-32 111-141 (202)
294 4gns_B Protein CSD3, chitin bi 31.8 1.1E+02 0.0037 27.9 6.8 53 49-102 338-398 (754)
295 1qsa_A Protein (soluble lytic 31.1 1.1E+02 0.0038 27.0 6.7 75 47-132 268-347 (618)
296 4aez_C MAD3, mitotic spindle c 30.9 52 0.0018 25.3 3.9 31 2-32 146-176 (223)
297 2bn5_A PSI; nuclear protein, s 30.8 25 0.00084 18.4 1.4 16 108-123 6-21 (33)
298 2knz_A Ubiquilin-4; cytoplasm, 30.5 79 0.0027 18.1 4.3 23 9-31 26-49 (53)
299 2cpw_A CBL-interacting protein 29.0 58 0.002 19.6 3.2 26 1-30 29-56 (64)
300 2dag_A Ubiquitin carboxyl-term 28.2 61 0.0021 20.1 3.3 27 1-31 19-47 (74)
301 4gns_B Protein CSD3, chitin bi 27.7 1E+02 0.0035 28.0 5.9 47 124-180 344-390 (754)
302 3o10_A Sacsin; all-helical dom 27.5 1E+02 0.0034 21.5 4.8 38 61-99 3-40 (141)
303 3i4r_B Nuclear pore complex pr 27.3 35 0.0012 30.5 2.8 67 16-85 338-407 (644)
304 1wji_A Tudor domain containing 26.7 94 0.0032 18.5 3.9 27 1-31 19-46 (63)
305 2rpa_A Katanin P60 ATPase-cont 25.3 1.3E+02 0.0045 18.9 5.0 44 11-56 17-60 (78)
306 2dl1_A Spartin; SPG20, MIT, st 24.6 52 0.0018 22.5 2.6 44 55-98 29-77 (116)
307 2d2s_A Exocyst complex compone 24.5 2.3E+02 0.0079 21.5 6.7 25 106-130 93-117 (235)
308 2crn_A Ubash3A protein; compac 24.3 1.1E+02 0.0039 18.2 4.0 27 1-31 19-47 (64)
309 3dra_A Protein farnesyltransfe 24.2 86 0.0029 24.8 4.4 29 46-74 256-284 (306)
310 1veg_A NEDD8 ultimate buster-1 22.0 88 0.003 20.0 3.2 27 1-31 39-66 (83)
311 1vej_A Riken cDNA 4931431F19; 21.9 1.5E+02 0.0052 18.4 4.7 20 81-100 48-67 (74)
312 4b4t_S RPN3, 26S proteasome re 21.7 1.2E+02 0.0041 26.3 5.0 52 23-74 235-296 (523)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=4.7e-16 Score=147.78 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=121.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH---HH
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDN---VV 81 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~---av 81 (198)
+|+|++|..+|++++.+++|+..++ ..++|++|.+++.+++++.++..+|+.++..|++++|+++|++++++.. .+
T Consensus 1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa 1141 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV 1141 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHH
Confidence 5899999999999999999988888 9999999999999999999999999999999999999999999998654 55
Q ss_pred HHHhhccCCHHHHHHHHHh--------------------------------cCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 82 RVDLDHLNDIRHAVDIVKA--------------------------------KKCTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~--------------------------------~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
..+. ++|+|++|++.... .++......+|.+|.+.|++++|+.+|.+
T Consensus 1142 ~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1142 QAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 5666 78888888765522 11222344688999999999999999999
Q ss_pred cCChHHHHHHHHHcchhhHHhhh
Q psy12373 130 SKCYQDAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 130 ag~~~~A~~la~~~~~~~~~~~~ 152 (198)
++.|....+.....|.++...++
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHH
Confidence 98888877777777666544443
No 2
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=2.3e-13 Score=129.54 Aligned_cols=190 Identities=13% Similarity=0.159 Sum_probs=141.7
Q ss_pred cchHHHHHHHHHHcCCHHH---HHHHHHHccCHHHHHhhhhc--------------------------------cCChHH
Q psy12373 6 LTLDRGKWTLYESAGNYEK---AATCYIQLKNWTKIGQLLPH--------------------------------IKSATT 50 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~---Ai~~y~~~~~~~~a~~l~~~--------------------------------~~~~~l 50 (198)
.|++++|.+.|+++++++- .+.++.++|+|+.+.+.+.. ..+..-
T Consensus 1118 ~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad 1197 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAH 1197 (1630)
T ss_pred CCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHH
Confidence 4788888888888876544 55556666666665554411 112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH------------HHHHHHH---
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK------------RIADYCN--- 115 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~------------~~A~~~~--- 115 (198)
+..+|..+++.|+|++|+.+|.++++|.++.++++ ++|++++|+..+++..++..-. .+|+.+.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLv-kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 45699999999999999999999999999999999 9999999999999988877633 2344443
Q ss_pred --hcCCHHHHHHHHHHcCChHHHHHHHHHcc-----hhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCC------------
Q psy12373 116 --KHGDFGAAIHFLILSKCYQDAFNLSQQHK-----KLHEFGKFLLEEDEPNPVELKRLAIHFEEDKG------------ 176 (198)
Q Consensus 116 --~~g~~~~Av~~y~~ag~~~~A~~la~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~------------ 176 (198)
..+.+++++.+|.+.|.|++|+++++..= .+..+.++..+-....|+-+....+.|.+.++
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 23356789999999999999999995441 12233333223455789999999999999999
Q ss_pred -hhhH----HhcCChhhHHhhhhhc
Q psy12373 177 -VLTS----FRVSQQSRAMPCSSGH 196 (198)
Q Consensus 177 -~~~A----~~ag~~~~Al~l~~~~ 196 (198)
|.++ ++.|+|+.|+....+|
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhc
Confidence 5555 8999999999555554
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.53 E-value=3.7e-13 Score=121.88 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCHHHHH----------HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373 9 DRGKWTLYESAGNYEKAA----------TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD 78 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai----------~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~ 78 (198)
.+.+.+++++.|.++.|+ ++....++|+.|.++++.++++.....+|+.+...|+++.|+++|.+++|+.
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~ 711 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE 711 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChh
Confidence 356677788888777775 4567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh
Q psy12373 79 NVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE 155 (198)
Q Consensus 79 ~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l 155 (198)
.+..++. ..++.+...++++. .+....+. ..|...|++++|+++|.+.++|++|+.||++++..+ +.
T Consensus 712 ~l~~l~~-~~~~~~~~~~~~~~a~~~~~~~~A~---~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~---~~--- 781 (814)
T 3mkq_A 712 SLFLLHS-SFNNKEGLVTLAKDAETTGKFNLAF---NAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD---NE--- 781 (814)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH---HH---
T ss_pred hhHHHHH-HcCCHHHHHHHHHHHHHcCchHHHH---HHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh---HH---
Confidence 9999999 78998876666543 33333322 236668999999999999999999999999886542 00
Q ss_pred cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 156 EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 156 ~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+.+....+++++..|++..|
T Consensus 782 ----i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 782 ----VNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp ----HHHHHHHHHHHHHTTTCHHHH
T ss_pred ----HHHHHHHHHHHHHhccchhHH
Confidence 345666788999999987656
No 4
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.34 E-value=2.9e-11 Score=104.07 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=106.9
Q ss_pred ccchHHHHHHHHHHcCCH--HHHHH-----HHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 5 ALTLDRGKWTLYESAGNY--EKAAT-----CYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 5 ~~~~~~~Aa~~y~~~g~~--~~Ai~-----~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
.+|+|++|.++|..+-.. +-++. +|.++|+|+++.++++.. +...+..+|..|...|.|++|+.+|.++..|
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~ 151 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF 151 (449)
T ss_dssp ------------------------------------CHHHHTTTTTCC-----------------CTTTHHHHHHHTTCH
T ss_pred hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhH
Confidence 457888888877665431 12555 999999999999888763 3457888999999999999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH-----------------HHHHHcCChHHHHHHH
Q psy12373 78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI-----------------HFLILSKCYQDAFNLS 140 (198)
Q Consensus 78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av-----------------~~y~~ag~~~~A~~la 140 (198)
.+.+.+++ ++|++++|++.+++..++..-..+...|...|+++.|. ++|.++|+|++|+.+.
T Consensus 152 ~~LA~~L~-~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 152 GRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-HhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999 99999999999999888877777778888888766554 8999999999999998
Q ss_pred HHcch-----hhHHhhhhhhcCCCCHHHHHHHHHH-------------HHhCCChhhH----HhcCChhhHHhhhhhcCC
Q psy12373 141 QQHKK-----LHEFGKFLLEEDEPNPVELKRLAIH-------------FEEDKGVLTS----FRVSQQSRAMPCSSGHHP 198 (198)
Q Consensus 141 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~-------------~e~~g~~~~A----~~ag~~~~Al~l~~~~~~ 198 (198)
++.=. +..+.++.-+-..-.|+-+...-+. +++..-|.+. ..-|+|+.|+....+|-|
T Consensus 231 e~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 231 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 76622 1222222111112223333322233 3333334443 677888888888887754
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.31 E-value=3.8e-11 Score=108.67 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373 7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 86 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~ 86 (198)
.+++..++++.+.|+++.|+++|.++++|+.+..|.....+.+.+..+++..+..|++..|..+|.+.|++++|++|++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~- 760 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI- 760 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH-
Confidence 3567889999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcCCHH-----HHHHHHHHHHhcCCHHHH
Q psy12373 87 HLNDIRHAVDIVKAKKCTE-----GAKRIADYCNKHGDFGAA 123 (198)
Q Consensus 87 ~~~~~~~a~~l~~~~~~~~-----~~~~~A~~~~~~g~~~~A 123 (198)
.+++|++|+.+|+++...+ ....++++++..|+.+.|
T Consensus 761 ~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 761 KSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 8999999999999987544 345788999999986543
No 6
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.7e-09 Score=81.99 Aligned_cols=130 Identities=8% Similarity=0.037 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
.|++.=-++-+..|+++.|.++++.++++.....+|...-..|+++-|+++|.++||+.+..=+|. ..|+-++..++++
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~-~tg~~e~L~kla~ 84 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYL-VTGDVNKLSKMQN 84 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHH-HhCCHHHHHHHHH
Confidence 455566667778889999988888889999999999999999999999999999999999999988 7788888766654
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 100 ---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 100 ---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
..++......+ +--.||+++++++|.+.|+|.+|.-+|+.++..+...+++
T Consensus 85 iA~~~g~~n~af~~---~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 85 IAQTREDFGSMLLN---TFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFL 138 (177)
T ss_dssp HHHHTTCHHHHHHH---HHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCccHHHHHHH---HHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHH
Confidence 33333333322 3456999999999999999999999999999887777764
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.03 E-value=2.1e-08 Score=86.35 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=134.6
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc----CHHHHH
Q psy12373 6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE----DYDNVV 81 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----~~~~av 81 (198)
.|+|++|..+|.++.++.+.+.++.++|+|+.|++...+..++.....+...|...|+|+.|..+..... +..++|
T Consensus 135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv 214 (449)
T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 214 (449)
T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHH
Confidence 3899999999999999999999999999999999999988888888888899999999999975554322 234455
Q ss_pred HHHhhccCCHHHHHHHHHhcC--------------------CHHH-------------HHHHHHHHHhcCCHHHHHHHHH
Q psy12373 82 RVDLDHLNDIRHAVDIVKAKK--------------------CTEG-------------AKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~~~--------------------~~~~-------------~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
.+|. ..|.|++|+.+.+..- .|+- .-.+.+.++...-+.+++-+|.
T Consensus 215 ~~Ye-k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHH-HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHH-HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 5565 6666666666555321 0110 1123445677778899999999
Q ss_pred HcCChHHHHHHHHHcch----hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH--------HhcCChhhHHhhhhhc
Q psy12373 129 LSKCYQDAFNLSQQHKK----LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS--------FRVSQQSRAMPCSSGH 196 (198)
Q Consensus 129 ~ag~~~~A~~la~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A--------~~ag~~~~Al~l~~~~ 196 (198)
.-+.|+.|+...-+|+. .+.|.++ +....+.+++.+...+|.+.. +.+ ..-=++.+++++...+
T Consensus 294 ~~~e~d~A~~tm~~h~~~a~~~~~f~~~--~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 294 KYEEYDNAIITMMNHPTDAWKEGQFKDI--ITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HTTCHHHHHHHHHHSTTTTCCHHHHHHH--HHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhchHHHHHHHHHhCChhhhhhHHHHHH--HhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 99999999998888853 2566777 567778899999999888443 333 2233455555555444
Q ss_pred C
Q psy12373 197 H 197 (198)
Q Consensus 197 ~ 197 (198)
+
T Consensus 370 ~ 370 (449)
T 1b89_A 370 K 370 (449)
T ss_dssp T
T ss_pred C
Confidence 3
No 8
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.1e-08 Score=81.00 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHc-------CCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373 8 LDRGKWTLYESA-------GNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAED 76 (198)
Q Consensus 8 ~~~~Aa~~y~~~-------g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~ 76 (198)
++++|..+|.++ |++++|+++|.++ ..+.....+ ...+..+|..+...|++++|+.+|.++
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-- 103 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKA------ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA-- 103 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 356665555554 4555555554433 223223332 357778999999999999999999887
Q ss_pred HHHHHHHHhhccCCHH
Q psy12373 77 YDNVVRVDLDHLNDIR 92 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~ 92 (198)
+.++. ..|++.
T Consensus 104 ----l~l~~-~~g~~~ 114 (292)
T 1qqe_A 104 ----IQIFT-HRGQFR 114 (292)
T ss_dssp ----HHHHH-HTTCHH
T ss_pred ----HHHHH-HcCCHH
Confidence 55555 444444
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.97 E-value=8.9e-08 Score=83.37 Aligned_cols=82 Identities=9% Similarity=-0.008 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
+...+..+|..+...|++++|+++|.++- -+...+.++. ..|++++|..+.++ .+ +......++..
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 45555666666666666666666666542 1234455555 55666666655442 11 22233345555
Q ss_pred HHhcCCHHHHHHHHHH
Q psy12373 114 CNKHGDFGAAIHFLIL 129 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ 129 (198)
+...|++++|+++|.+
T Consensus 451 ~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 451 HMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5555665555555544
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=7e-08 Score=79.92 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.......+|..+...|++++|+++|.++
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445555566666666666666666554
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.95 E-value=3.7e-08 Score=85.76 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHc----C---CHHHHHHHHHHccCHHHHHhhhhccC--C-------------------hHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA----G---NYEKAATCYIQLKNWTKIGQLLPHIK--S-------------------ATTFIQYAKAK 58 (198)
Q Consensus 7 ~~~~~Aa~~y~~~----g---~~~~Ai~~y~~~~~~~~a~~l~~~~~--~-------------------~~l~~~~A~~~ 58 (198)
|.+++|..+|.+. . -+...+.+|.+.|+++.|.+++.+.. . ...+..+|..+
T Consensus 131 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 131 GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 5566666666655 1 12334566667777888777776322 1 45667778888
Q ss_pred HHcCCHHHHHHHHHHhcCH----HHH------------------------------------------HHHHhhccCCHH
Q psy12373 59 EAMGSYRESVGAYERAEDY----DNV------------------------------------------VRVDLDHLNDIR 92 (198)
Q Consensus 59 e~~g~~~~A~~~Y~ka~~~----~~a------------------------------------------v~l~~~~~~~~~ 92 (198)
...|++++|+++|.++-.. ..+ +.++. ..|+++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 289 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-HEDELR 289 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-THHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc-CcchHH
Confidence 8888888888888876311 111 22233 456777
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAK----KCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~----~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+|.++..+. +++.....++..+...|++++|+.+|.++
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777776643 33445556788888888888888887765
No 12
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=7.9e-08 Score=78.11 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
..+..+|..+...|++++|+++|.++ +.++. ..|+...+... ...+|..+.. |++++|+++|.
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~A------l~l~~-~~g~~~~~a~~---------~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKA------SVMYV-ENGTPDTAAMA---------LDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHH------HHHHH-TTTCHHHHHHH---------HHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH------HHHHH-HcCCHHHHHHH---------HHHHHHHHHc-CCHHHHHHHHH
Confidence 46778899999999999999999887 66665 45554432211 2234555544 55555555544
Q ss_pred H
Q psy12373 129 L 129 (198)
Q Consensus 129 ~ 129 (198)
+
T Consensus 140 ~ 140 (307)
T 2ifu_A 140 Q 140 (307)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.88 E-value=2.1e-07 Score=71.79 Aligned_cols=161 Identities=12% Similarity=-0.004 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|.+.|+++.|+..|.++ .++ ..+++..+..+|..+...|++++|+..|.++-. +...-.
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERA------LKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456677778888888777543 221 334778888999999999999999999988742 123344
Q ss_pred HHhhcc-----------CCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHH-HHH---
Q psy12373 83 VDLDHL-----------NDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDA-FNL--- 139 (198)
Q Consensus 83 l~~~~~-----------~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A-~~l--- 139 (198)
++. .. |++++|....++ .| ++.....+|..+...|++++|+..|.++-. ..++ ..+
T Consensus 82 ~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 455 56 888888776543 33 345566789999999999999988877521 1111 111
Q ss_pred HHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 140 SQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 140 a~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
....|.++....... +. .+.++..+..++..+...|++++|
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 223333322221110 22 356788899999999888888887
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.87 E-value=5.2e-07 Score=73.07 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHc--CCHHH-------HHHHHHHccCHHHHHhhhhccCCh--HHHHHHHHHHHHcCCHHHHHHHHHHh-
Q psy12373 7 TLDRGKWTLYESA--GNYEK-------AATCYIQLKNWTKIGQLLPHIKSA--TTFIQYAKAKEAMGSYRESVGAYERA- 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--g~~~~-------Ai~~y~~~~~~~~a~~l~~~~~~~--~l~~~~A~~~e~~g~~~~A~~~Y~ka- 74 (198)
|.|+.|.+...+. -+++. ..++|+..|+++.|...++..+.+ ..+..+|.++...|++++|++.|.+.
T Consensus 13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll 92 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREM 92 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7888888888763 22332 357888899999887776654433 34557789999999999999999873
Q ss_pred -c-----CH---HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH---------HH
Q psy12373 75 -E-----DY---DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ---------DA 136 (198)
Q Consensus 75 -~-----~~---~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~---------~A 136 (198)
. +. ...-.++. ..|++++|.++.++.++++....++..+...|++++|+..|.++-... .+
T Consensus 93 ~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 93 SRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp HSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 1 11 12224555 779999999998885567777788999999999999999988874322 11
Q ss_pred -HHHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 137 -FNLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 137 -~~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.+....+.++. +.+++.. .+.++..+..+|..+...|++++|
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 122222344332 2333222 355788999999999999999888
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.6e-08 Score=76.96 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=93.1
Q ss_pred HHHHHccCHHHHHhhhhccC-----C-------hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373 27 TCYIQLKNWTKIGQLLPHIK-----S-------ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~~-----~-------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a 94 (198)
.+|...|+++.|...+.+.- . ..++..+|..+...|++++|+++|.++-....-..++. .+|++++|
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~a 124 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT-KLRNAEKE 124 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH-HHhHHHHH
Confidence 34455566666555543210 1 46677778888888888888888887754333334555 56677777
Q ss_pred HHHHHhc--CCH---HHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHhhhhh--hc-CC
Q psy12373 95 VDIVKAK--KCT---EGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFGKFLL--EE-DE 158 (198)
Q Consensus 95 ~~l~~~~--~~~---~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~~~~~--l~-~~ 158 (198)
....++. .++ .....+|..+...|++++|+..|.++-. ...+ ..+....+.++.....+. +. .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 6665531 222 2344678888899999999888877632 1111 222233344432222221 22 34
Q ss_pred CCHHHHHHHHHHHHhCCChhhH
Q psy12373 159 PNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 159 ~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+..+..+|..+...|++++|
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 5688999999999999999888
No 16
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=3.1e-07 Score=76.00 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHH
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIR 92 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~ 92 (198)
..+|...|++++|.....+ .+....+..+|..+...|++++|++.|.++-. +.....++. ..|+++
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~ 152 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLE 152 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHH
Confidence 3445566666666555542 23566788889999999999999999887632 123344555 678888
Q ss_pred HHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+|..+.++ .|+ ......++..+...|++++|+..|.++
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88766543 232 344456778888888888887777654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.1e-06 Score=70.15 Aligned_cols=155 Identities=9% Similarity=-0.093 Sum_probs=91.5
Q ss_pred HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcC-CHHHHHHHHHHhcC--------HHHHHHHHhhccCC
Q psy12373 25 AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMG-SYRESVGAYERAED--------YDNVVRVDLDHLND 90 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~ 90 (198)
.+.++...|+++.+..++.+ ..++..+..+|..+...| ++++|+++|.++-. +.....++. ..|+
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~ 140 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESE 140 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccC
Confidence 33445555666666555542 236677888888888888 88888888887642 344455666 6788
Q ss_pred HHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HH----HHHHHHHcchhhHH----hhhh
Q psy12373 91 IRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QD----AFNLSQQHKKLHEF----GKFL 153 (198)
Q Consensus 91 ~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~----A~~la~~~~~~~~~----~~~~ 153 (198)
+++|....++ .|. ......+|..+...|++++|+++|.++-.. .. -..+....+.++.. ..++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888776543 122 344456777788888888877777665321 01 11122223332211 1111
Q ss_pred hhc--------CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 154 LEE--------DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 154 ~l~--------~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+. .+..+..+..+|..+...|++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 111 133456777788877777877777
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.82 E-value=5.3e-07 Score=66.83 Aligned_cols=140 Identities=9% Similarity=0.101 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHH
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNV 80 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~a 80 (198)
|-.-+..|.+.|++++|++.|.++ .++ ..+++..+..+|..+...|++++|++.|.++-.. ...
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKV------LKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 444567788889999999888654 222 3347788999999999999999999999987422 223
Q ss_pred HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh
Q psy12373 81 VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE 155 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l 155 (198)
..++. ..++++.+.....+ .| ++.....+|..+...|++++|++.|.++-. +
T Consensus 80 ~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----------------------~ 136 (184)
T 3vtx_A 80 GSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----------------------I 136 (184)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----------------------h
Confidence 34444 67888888776543 22 345556778888888888888777654311 1
Q ss_pred cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 156 EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 156 ~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+..+..+..+|..|...|++++|
T Consensus 137 -~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 137 -KPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -cchhhhHHHHHHHHHHHCCCHHHH
Confidence 245788999999999999999999
No 19
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.81 E-value=2.2e-07 Score=72.58 Aligned_cols=164 Identities=10% Similarity=-0.116 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHcCCH------------HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNY------------EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVG 69 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~------------~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~ 69 (198)
+.+++|.++|.++-.. -....+|...|+++.|...+.+ ..++..+..+|..+...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 6788888888776541 1345566677888887666653 2367888889999999999999999
Q ss_pred HHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-------
Q psy12373 70 AYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILS------- 130 (198)
Q Consensus 70 ~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a------- 130 (198)
+|.++-. +.....++. ..|++++|..+.++ .|+......+...+...|++++|+.+|.++
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 9988743 233445666 67888888876653 232222222333345568888888877443
Q ss_pred -------------CChHHHHHHHHHcchhhHHhhhhhhcC---CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 -------------KCYQDAFNLSQQHKKLHEFGKFLLEED---EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 -------------g~~~~A~~la~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.+++|+..+.+ ++...+ +..+..+..+|..+...|++++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 234 (275)
T 1xnf_A 178 QWGWNIVEFYLGNISEQTLMERLKA---------DATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234 (275)
T ss_dssp STHHHHHHHHTTSSCHHHHHHHHHH---------HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHH---------HhcccccccccccHHHHHHHHHHHHcCCHHHH
Confidence 222333333221 111111 11257889999999999999988
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.81 E-value=6.4e-07 Score=72.09 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..+..+|..+...|++++|+++|.++
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33344444444444444444444433
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.81 E-value=1.3e-07 Score=77.49 Aligned_cols=153 Identities=8% Similarity=-0.031 Sum_probs=93.2
Q ss_pred HHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH------------------HHHHH
Q psy12373 27 TCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD------------------NVVRV 83 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~------------------~av~l 83 (198)
.+|...|+++.|...+.+ ..+...+..+|..+...|++++|+++|.++-... ....+
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 344455666666555542 2356777888888888888888888888874321 11345
Q ss_pred HhhccCCHHHHHHHHHh----cC---CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--------hHHHHHHHHHcchhhH
Q psy12373 84 DLDHLNDIRHAVDIVKA----KK---CTEGAKRIADYCNKHGDFGAAIHFLILSKC--------YQDAFNLSQQHKKLHE 148 (198)
Q Consensus 84 ~~~~~~~~~~a~~l~~~----~~---~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--------~~~A~~la~~~~~~~~ 148 (198)
+. ..|++++|..+.++ .| ++.....+|..+...|++++|+..|.++-. |..-..++...|.++.
T Consensus 187 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 187 PV-DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hh-hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55 67788888776643 23 355566788888888999888888876532 1111222333444332
Q ss_pred Hhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 149 FGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 149 ~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
...... +. .+..+..+..++..|...|++.+|
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 222211 22 344588888888888888888888
No 22
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.79 E-value=5.9e-07 Score=75.28 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhCCChhhH
Q psy12373 163 ELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 163 ~~~~~A~~~e~~g~~~~A 180 (198)
.+..++..+...|++++|
T Consensus 297 ~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHH
Confidence 344444444444444444
No 23
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.79 E-value=8.6e-07 Score=74.27 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|.+++|.++|.++= + +-....+|...|+++.|...+.+ .++...+..+|..+...|++++|+++|.+
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666665431 1 12334456666777777666653 23677888899999999999999999998
Q ss_pred hcCH-----------HHH------------HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 74 AEDY-----------DNV------------VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 74 a~~~-----------~~a------------v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
+-.. ... ..++. ..|++++|..+..+ .| ++.....+|..+...|++++|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 8431 111 23366 67899998877653 22 34555678888999999988888
Q ss_pred HHHHc
Q psy12373 126 FLILS 130 (198)
Q Consensus 126 ~y~~a 130 (198)
.|.++
T Consensus 199 ~~~~~ 203 (450)
T 2y4t_A 199 DLKAA 203 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 24
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=1.3e-06 Score=68.84 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=84.1
Q ss_pred ccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHhc---CHH---HHHHHHhhc----cCCHHHH
Q psy12373 32 LKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGAYERAE---DYD---NVVRVDLDH----LNDIRHA 94 (198)
Q Consensus 32 ~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~---~~~---~av~l~~~~----~~~~~~a 94 (198)
.+++++|.....+ ..++..+..+|..+.. .+++++|+++|.++- +.. ..-.++. . .+++++|
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~-~~~~~~~~~~~A 133 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH-DGKVVTRDFKKA 133 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH-cCCCcccCHHHH
Confidence 6666665555542 3466777777777777 777777777777763 222 2223344 4 6777777
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcC---ChHHHHHHH---HH----cchhhHHhhhhh-hc
Q psy12373 95 VDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSK---CYQDAFNLS---QQ----HKKLHEFGKFLL-EE 156 (198)
Q Consensus 95 ~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag---~~~~A~~la---~~----~~~~~~~~~~~~-l~ 156 (198)
+...+ +..++.....++..+.. .+++++|+.+|.++- ...-...++ .. .+.++....... ..
T Consensus 134 ~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 134 VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 66544 23455556667777776 777777777777652 222222222 22 222222221111 11
Q ss_pred CCCCHHHHHHHHHHHHh----CCChhhH
Q psy12373 157 DEPNPVELKRLAIHFEE----DKGVLTS 180 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~----~g~~~~A 180 (198)
...++..+..++..|.. .+++++|
T Consensus 214 ~~~~~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 214 ELENGGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred hCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 22347777777777777 7777777
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.72 E-value=1.8e-06 Score=69.36 Aligned_cols=161 Identities=14% Similarity=0.012 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|...|+++.|+++|.++- .+ ..+++..+..+|..+...|++++|+++|.++-. +.....
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAV------DG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH------hh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44566777788888888876542 11 234678899999999999999999999998743 244456
Q ss_pred HHhhccCCHHHHHHHHHhc----C---C-HHHHHHH------------HHHHHhcCCHHHHHHHHHHcCC----hHHH--
Q psy12373 83 VDLDHLNDIRHAVDIVKAK----K---C-TEGAKRI------------ADYCNKHGDFGAAIHFLILSKC----YQDA-- 136 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~----~---~-~~~~~~~------------A~~~~~~g~~~~Av~~y~~ag~----~~~A-- 136 (198)
++. ..|++++|....++. | + +.....+ |..+...|++++|++.|.++-. ...+
T Consensus 80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 666 789999998877642 3 1 2222233 6778889999998888877521 1111
Q ss_pred --HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 137 --FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 137 --~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+....+.++...+.+. +. .+.++..+..+|..+...|++++|
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 122233333332222210 22 345678888888888888888777
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.69 E-value=1.6e-06 Score=70.55 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
++..+..+|..+...|++++|+++|.++-. +.....++. ..|++++|....+
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 156 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILR 156 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 445555566666666666666666665421 122333444 4555655555443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.68 E-value=1.5e-06 Score=71.03 Aligned_cols=161 Identities=7% Similarity=-0.057 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|.+.|++++|+++|.++ ..+ ..++...+..+|..+...|++++|+++|.++-. +.....
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAA------ILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------HHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3455666667777777777544 111 234678899999999999999999999998742 234456
Q ss_pred HHhhccCCHHHHHHHHHhcC--CHHH-------------HHHHHHHHHhcCCHHHHHHHHHHcCCh------HHH----H
Q psy12373 83 VDLDHLNDIRHAVDIVKAKK--CTEG-------------AKRIADYCNKHGDFGAAIHFLILSKCY------QDA----F 137 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~~~--~~~~-------------~~~~A~~~~~~g~~~~Av~~y~~ag~~------~~A----~ 137 (198)
++. ..|++++|..+.++.- .|.. ...++..+...|++++|+.+|.++-.. ..+ .
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 666 7899999988765421 1111 113477888899999999999887321 111 2
Q ss_pred HHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 138 NLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 138 ~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+....|.++...+.+. +. .+.++..+..++..|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 22333444433222221 22 345688999999999999999998
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.1e-06 Score=67.49 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY----------- 77 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----------- 77 (198)
+..-+..|...|++++|+++|.++ ..+ . +++..+..+|..+...|++++|+++|.++-..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a------~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKA------WEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------HHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH------HHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 445566777788888888888655 222 2 66788999999999999999999999987321
Q ss_pred ----HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--hHHH------HHHHH
Q psy12373 78 ----DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC--YQDA------FNLSQ 141 (198)
Q Consensus 78 ----~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--~~~A------~~la~ 141 (198)
.....++. ..|++++|.....+ .+. +..+...|++++|+..|.++-. +..+ ..+..
T Consensus 79 ~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 79 SKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 11222333 44555555444332 111 2223334444555555444321 1111 12223
Q ss_pred HcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 142 QHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 142 ~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+.++.....+. +. .+.++..+..+|..|...|++++|
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 3344432222221 22 345688888899988889998888
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.67 E-value=1.4e-06 Score=69.45 Aligned_cols=154 Identities=8% Similarity=-0.087 Sum_probs=98.0
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHH------------
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNV------------ 80 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~a------------ 80 (198)
..+|...|+++.|...+.+ ..+...+..+|..+...|++++|+++|.++-.. ...
T Consensus 62 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 3455566777776655542 236678888899999999999999998886321 000
Q ss_pred --HH-HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcc
Q psy12373 81 --VR-VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHK 144 (198)
Q Consensus 81 --v~-l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~ 144 (198)
.. ++. ..|++++|..+..+ .| ++.....+|..+...|++++|+..|.++-. ...+ ..+....+
T Consensus 142 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFA-APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTT-SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 11 255 66788888776653 22 345566788899999999999988876522 1111 22233444
Q ss_pred hhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 145 KLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 145 ~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++.....+. +. .+..+..+..++..+...|++++|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 4432222221 22 345688899999999999999888
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.66 E-value=2.5e-06 Score=72.96 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=107.2
Q ss_pred HHHHHcCCHHHHHHHHHHc--------------------cCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHH
Q psy12373 14 TLYESAGNYEKAATCYIQL--------------------KNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESV 68 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~--------------------~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~ 68 (198)
.+|...|++++|+++|.++ |+++.+...+.+ ..++.++..+|..+...|++++|+
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3444556666666655543 445555444432 236778888899999999999999
Q ss_pred HHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHH
Q psy12373 69 GAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQD 135 (198)
Q Consensus 69 ~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~ 135 (198)
++|.++-. +.....++. ..|++++|..+.++ .| ++.....+|..+...|++++|+..|.++-....
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLY-KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99988742 234456666 78999998877653 22 344556788999999999999998887532211
Q ss_pred H--------------HHHHHHc----------chhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 136 A--------------FNLSQQH----------KKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 136 A--------------~~la~~~----------~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
- ..+.... +.++.....+. +. .+..+..+..+|..|...|++++|
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 0 0122222 33322222211 22 346789999999999999999998
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.65 E-value=7.3e-07 Score=68.71 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=94.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
++..+..+|..+...|++++|+..|.++-. +...-.++. ..|++++|....++ .| ++.....+|..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 567888999999999999999999998743 234445566 78999999877653 33 34556678999
Q ss_pred HHhc-----------CCHHHHHHHHHHcCC----hHHH-H---HHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHH
Q psy12373 114 CNKH-----------GDFGAAIHFLILSKC----YQDA-F---NLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIH 170 (198)
Q Consensus 114 ~~~~-----------g~~~~Av~~y~~ag~----~~~A-~---~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 170 (198)
+... |++++|+..|.++-. ...+ + .+....|.++. +..++.+. .++..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 9988 999999998877632 1222 1 12233344332 23333344 789999999999
Q ss_pred HHhCCChhhH
Q psy12373 171 FEEDKGVLTS 180 (198)
Q Consensus 171 ~e~~g~~~~A 180 (198)
+...|++++|
T Consensus 161 ~~~~g~~~~A 170 (217)
T 2pl2_A 161 YLSMGRLDEA 170 (217)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCCHHHH
Confidence 9999999988
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.65 E-value=1.2e-06 Score=64.91 Aligned_cols=124 Identities=11% Similarity=0.102 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
++.++..+|..+...|++++|+++|.++=. +.....++. ..|++++|...... .+ .+.....++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 578899999999999999999999999832 123344555 67888887765543 22 24444556677
Q ss_pred HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-------------
Q psy12373 114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS------------- 180 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A------------- 180 (198)
+...++++.|++.+.++-. + .+..+..+..+|..|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~----------------------~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA----------------------L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHH----------------------h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 7777777776666544311 1 234677888888888888888888
Q ss_pred ------------HhcCChhhHHhhhh
Q psy12373 181 ------------FRVSQQSRAMPCSS 194 (198)
Q Consensus 181 ------------~~ag~~~~Al~l~~ 194 (198)
.+.|++++|++.+.
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67788888887764
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.65 E-value=1.4e-05 Score=62.91 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHH----cCCHHHHHHHHHHhcC---H---HHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEA----MGSYRESVGAYERAED---Y---DNV 80 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~~---~---~~a 80 (198)
.-+..|...|++++|+++|.++- + ..++..+..+|..+.. .|++++|+++|.++-+ . ...
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~------~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKAC------D----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------H----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH------H----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34567777888888888886542 1 3567888999999999 9999999999998743 2 223
Q ss_pred HHHHhhc----cCCHHHHHHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcCCh---HHHHHHH---HH-
Q psy12373 81 VRVDLDH----LNDIRHAVDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCY---QDAFNLS---QQ- 142 (198)
Q Consensus 81 v~l~~~~----~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag~~---~~A~~la---~~- 142 (198)
-.++. . .+++++|+...+ +..++.....+|..+.. .+++++|+++|.++-.. .--..++ ..
T Consensus 81 g~~~~-~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 81 GNLYY-SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHh-CCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 34555 5 799999987665 34567778889999999 99999999999886432 2122222 22
Q ss_pred ---cchhhHHhhhhh-hcCCCCHHHHHHHHHHHHh----CCChhhH
Q psy12373 143 ---HKKLHEFGKFLL-EEDEPNPVELKRLAIHFEE----DKGVLTS 180 (198)
Q Consensus 143 ---~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~----~g~~~~A 180 (198)
.+.++....... .....++..+..++..|.. .+++++|
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 233322222211 1123578899999999999 9999988
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.65 E-value=1.1e-06 Score=67.14 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
+...+..+|..+...|++++|+++|.++-.. .....++. ..|++++|..+.++ .+ ++.....+|..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5667777788888888888888888776421 23345555 67888887766543 22 34555567777
Q ss_pred HHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 114 CNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+...|++++|+.+|.++-. ...+ ..++...+.++...+.+. +. .+..+..+..++..+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 8888888888887776522 1111 112233333332222211 12 345688999999999999999988
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.64 E-value=1.6e-06 Score=67.04 Aligned_cols=158 Identities=11% Similarity=-0.044 Sum_probs=98.3
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHh
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDL 85 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~ 85 (198)
..|...|++++|+++|.++ ..+ ...+...+..+|..+...|++++|+++|.++-. +.....++.
T Consensus 45 ~~~~~~~~~~~A~~~~~~a------l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKA------LEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHH------Hhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 3444455555555554332 111 223667888889999999999999999987642 233455666
Q ss_pred hccCCHHHHHHHHHhc------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHh
Q psy12373 86 DHLNDIRHAVDIVKAK------KC-TEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFG 150 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~------~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~ 150 (198)
..|++++|..+..+. +. +.....+|..+...|++++|+.+|.++-. ...+ ..++...+.++...
T Consensus 117 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 -EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp -HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 778999988877643 11 23344678888888999888888877532 1111 22233444443322
Q ss_pred hhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 151 KFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 151 ~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+. +. .+..+..+..++..+...|++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 2221 22 345678888889988888888888
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.63 E-value=8.5e-07 Score=72.21 Aligned_cols=154 Identities=10% Similarity=-0.058 Sum_probs=102.6
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------------------
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------------------- 78 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------------------- 78 (198)
..+|...|+++.|...+.+ .+++..+..+|..+...|++++|+++|.++-...
T Consensus 105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 3445566777777666542 2377889999999999999999999999863210
Q ss_pred -HHHHHHhhccCCHHHHHHHHHh----cCC---HHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHH
Q psy12373 79 -NVVRVDLDHLNDIRHAVDIVKA----KKC---TEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQ 142 (198)
Q Consensus 79 -~av~l~~~~~~~~~~a~~l~~~----~~~---~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~ 142 (198)
..+..+. ..|++++|..+.++ .|+ +.....+|..+...|++++|+.+|.++-. ...+ ..++..
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 0233444 56788888776653 233 45566789999999999999998877532 1111 222334
Q ss_pred cchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 143 HKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 143 ~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.|.++....... +. .+..+..+..+|..|...|++++|
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 444432222221 22 345688999999999999999888
No 37
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.2e-06 Score=64.88 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH 87 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~ 87 (198)
+++.=++.-...|+++-|.+||.+++++.++.=|.....+.+-+..+++..+..|++..|..+|.-.||++.+|++++ .
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~-~ 114 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFA-E 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHH-H
Confidence 344555666788999999999999999999877777777889999999999999999999999999999999999999 8
Q ss_pred cCCHHHHHHHHHhcCCHHHHH
Q psy12373 88 LNDIRHAVDIVKAKKCTEGAK 108 (198)
Q Consensus 88 ~~~~~~a~~l~~~~~~~~~~~ 108 (198)
.|+|.+|.-+++.+...+...
T Consensus 115 ~~r~~eA~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 115 GGSLPLAYAVAKANGDEAAAS 135 (177)
T ss_dssp TTCHHHHHHHHHHTTCHHHHH
T ss_pred CCChHHHHHHHHHcCcHHHHH
Confidence 899999999999876655444
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.8e-06 Score=71.22 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHcCC-------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 7 TLDRGKWTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~-------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
|+|++|.++|.++=. +-....+|...|+++.|...+.+ .++...+..+|..+...|++++|+..|.++
T Consensus 20 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667777777765521 33445667777888887766653 236778889999999999999999999876
No 39
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=8.8e-06 Score=57.52 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..-+..|...|++++|++.|.++-. +.....+ ...+..+|..+...|++++|+++|.++ +++..
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~ 80 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLL------IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT------LLLAR 80 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH------HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence 3456677788888888888876533 3323232 246778899999999999999999888 77776
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK 165 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (198)
..++.... ......+|..+...|++++|+.+|.+ |++++...+.. ...+..+.
T Consensus 81 -~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~~~~~~~-----------~~~~~~~~ 133 (164)
T 3ro3_A 81 -QLKDRAVE---------AQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELKDR-----------IGEGRACW 133 (164)
T ss_dssp -HTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCH-----------HHHHHHHH
T ss_pred -HhCCcHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHccch-----------HhHHHHHH
Confidence 44443321 12244678888899999999988754 45555544322 11246678
Q ss_pred HHHHHHHhCCChhhHHhcCChhhHHhhhhhc
Q psy12373 166 RLAIHFEEDKGVLTSFRVSQQSRAMPCSSGH 196 (198)
Q Consensus 166 ~~A~~~e~~g~~~~A~~ag~~~~Al~l~~~~ 196 (198)
.+|..+...|++++|... +.+|++++.+.
T Consensus 134 ~la~~~~~~g~~~~A~~~--~~~a~~~~~~~ 162 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHF--AEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHTCHHHHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHH--HHHHHHHHHHh
Confidence 899999999999888221 45566655443
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.56 E-value=1.2e-05 Score=62.04 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|.++|.++= + +.....+|...|+++.|...+.+ ..+..++..+|..+...|++++|+++|.+
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56666766666541 1 22345567777788777666643 23678888999999999999999999999
Q ss_pred hcC----H------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 74 AED----Y------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 74 a~~----~------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+-. + .....++. ..|++++|..+.++ .+ ++.....+|..+...|++++|+.+|.++-
T Consensus 131 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 131 ASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 854 1 33455666 78999999887654 23 35566678999999999999999998763
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.55 E-value=9.2e-06 Score=64.64 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=105.4
Q ss_pred HHHHHcc-CHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHH
Q psy12373 27 TCYIQLK-NWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIR 92 (198)
Q Consensus 27 ~~y~~~~-~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~ 92 (198)
.+|...| +++.+...+.+ ..++..+..+|..+...|++++|+++|.++-. +.....++. ..|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHH
Confidence 3445556 77776665542 22677888999999999999999999998753 234455666 789999
Q ss_pred HHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH-------------HH----HHHHHHcchhhHHh
Q psy12373 93 HAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ-------------DA----FNLSQQHKKLHEFG 150 (198)
Q Consensus 93 ~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~-------------~A----~~la~~~~~~~~~~ 150 (198)
+|..+.++. | ++.....+|..+...|++++|+.+|.++-... .+ ..+....|.++...
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 998877642 2 34556678999999999999999887764321 11 22233444443322
Q ss_pred hhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 151 KFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 151 ~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+. +. .+..+..+..+|..+...|++.+|
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 2221 22 345788999999999999999888
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.55 E-value=4.6e-06 Score=60.54 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~ 82 (198)
.-+..|...|+++.|+.+|.++-.. ...+...+..+|..+...|++++|+++|.++-.. .....
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3455556666666666666543221 1236778889999999999999999999987422 23445
Q ss_pred HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC
Q psy12373 83 VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED 157 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~ 157 (198)
++. ..|++++|..+..+ .| ++.....+|..+...|++++|+..|.++-. + .
T Consensus 85 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------~-~ 140 (186)
T 3as5_A 85 TYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG----------------------L-R 140 (186)
T ss_dssp HHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H-C
T ss_pred HHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----------------------c-C
Confidence 566 67899988876653 22 344445667777777777777666544311 1 1
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++..+..+|..+...|++++|
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHH
Confidence 34578889999999999999888
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.54 E-value=1.1e-05 Score=60.61 Aligned_cols=161 Identities=12% Similarity=0.005 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|...|+++.|+++|.++ .++ ...+...+..+|..+...|++++|+++|.++-. +.....
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~------~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDA------LKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH------HHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4456677777777777777543 111 223567888889999999999999999988742 234455
Q ss_pred HHhhcc-CCHHHHHHHHHhc------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchh
Q psy12373 83 VDLDHL-NDIRHAVDIVKAK------KC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKL 146 (198)
Q Consensus 83 l~~~~~-~~~~~a~~l~~~~------~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~ 146 (198)
++. .. |++++|..+.++. +. ......+|..+...|++++|+.+|.++-.. ..+ ..+....|.+
T Consensus 85 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 666 78 8999988776532 11 334456788888899999888888765321 111 2222333443
Q ss_pred hHHh----hhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 147 HEFG----KFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 147 ~~~~----~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+... .++.+.+..++..+...+..+...|+++.|
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 3222 221223325777788888888888888777
No 44
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.52 E-value=3.6e-06 Score=76.74 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=99.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRV 83 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l 83 (198)
-+.+|.+.|++++|+++|.++ .++ .-+....+..+|..+...|++++|+++|.++=. +...-.+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kA------l~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKA------LEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467788889999998888654 333 334678899999999999999999999998742 1233344
Q ss_pred HhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC
Q psy12373 84 DLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE 158 (198)
Q Consensus 84 ~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~ 158 (198)
+. .+|++++|....++ .| .......+|..+...|++++|+..|.++= + + .+
T Consensus 87 l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al------~----------------l-~P 142 (723)
T 4gyw_A 87 LK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL------K----------------L-KP 142 (723)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------H----------------H-CS
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------H----------------h-CC
Confidence 55 67888888765543 22 34455577888888888887777765431 1 2 24
Q ss_pred CCHHHHHHHHHHHHhCCChhhH
Q psy12373 159 PNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 159 ~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..++.+..++..+...|++++|
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTH
T ss_pred CChHHHhhhhhHHHhcccHHHH
Confidence 5688899999999999999988
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.50 E-value=3.1e-06 Score=72.36 Aligned_cols=47 Identities=17% Similarity=0.418 Sum_probs=33.1
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
..+|...|+++.|.+.+.+ .++...+..+|..+...|++++|++.|.
T Consensus 66 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 66 SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455566667766665543 2366777888888888888888888774
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.47 E-value=6.6e-06 Score=68.10 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCC-----------------HHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLND-----------------IRHAVDI 97 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~-----------------~~~a~~l 97 (198)
.++..+|..+...|++++|+++|.++-.. .....++. ..|+ +++|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH-AKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HcCcccccccchhhhhhhhHHHHHHHHH
Confidence 45566777788888888887777765432 11222333 4556 6666554
Q ss_pred HHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 98 VKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 98 ~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..+ .+++. ....+|..+...|++++|+.+|.++
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 332 22211 2234667777777777777766655
No 47
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.47 E-value=6.2e-06 Score=68.31 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCC-HH-
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKC-TE- 105 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~-~~- 105 (198)
..+..+|..+...|++++|+++|.++-+. ...-.++. ..|++++|....++ ..+ +.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 46778899999999999999999887532 23344455 67899988765542 233 22
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh-------------------hHHhhhhhh----c-CCC
Q psy12373 106 --GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL-------------------HEFGKFLLE----E-DEP 159 (198)
Q Consensus 106 --~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~-------------------~~~~~~~~l----~-~~~ 159 (198)
....+|..+...|++++|+++|.++- +++...+.. +.+.+++.+ . .+.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGM------AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence 34468999999999999999987653 333222211 112222211 0 112
Q ss_pred CHHHHHHHHHHHHhCCChhhH
Q psy12373 160 NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 160 ~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+.+..+|..|...|++++|
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKA 358 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHH
Confidence 245677788888888888887
No 48
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.47 E-value=4.6e-05 Score=65.40 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHHhc---CHHHHH---HHHhhc----cCCHHHHHHHHHh---cCCHHHHHH
Q psy12373 47 SATTFIQYAKAKEA----MGSYRESVGAYERAE---DYDNVV---RVDLDH----LNDIRHAVDIVKA---KKCTEGAKR 109 (198)
Q Consensus 47 ~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~---~~~~av---~l~~~~----~~~~~~a~~l~~~---~~~~~~~~~ 109 (198)
++.....+|..+.. .+++++|+++|.++- +..... .++. . .+++++|+...++ ..++.....
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~-~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~ 296 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILE-QGLAGAKEPLKALEWYRKSAEQGNSDGQYY 296 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTTSSCCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555556665554 556666666666542 222111 1222 2 4555555544432 234444455
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHc
Q psy12373 110 IADYCNKH-----GDFGAAIHFLILS 130 (198)
Q Consensus 110 ~A~~~~~~-----g~~~~Av~~y~~a 130 (198)
++..+... +++++|+..|.++
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 55555554 5566666555544
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.9e-05 Score=66.87 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHH
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVV 81 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av 81 (198)
..-+..|.+.|+++.|+.+|.++-. ..+++.++..+|..+...|++++|++.|.++-. +....
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALE---------LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh---------cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3445666677888888888764421 124678899999999999999999999988742 23445
Q ss_pred HHHhhccCCHHHHHHHHH
Q psy12373 82 RVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~ 99 (198)
.++. ..|++++|....+
T Consensus 81 ~~~~-~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 81 SANE-GLGKFADAMFDLS 97 (514)
T ss_dssp HHHH-HTTCHHHHHHHHH
T ss_pred HHHH-HHhhHHHHHHHHH
Confidence 6666 7788888876543
No 50
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=1.2e-05 Score=56.64 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
+-+..|-+.|++++|++.|.++ .++ ..++..++..+|..+...|++++|++.|.++ |++.-+....
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~A------l~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~ 78 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKA------IEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKA------VEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH------HHhCcccchh
Confidence 3455677788888888888654 333 3346788899999999999999999999988 7776533233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+... ......+|..+...|++++|++.|.++
T Consensus 79 ~~~~---------a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 79 YKLI---------AKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3211 112446788899999999999988664
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.43 E-value=3.2e-05 Score=63.93 Aligned_cols=145 Identities=13% Similarity=0.060 Sum_probs=89.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYD--------- 78 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~--------- 78 (198)
-+.+|...|++++|++.|.++ .+++..+++ ..++..+|..+...|++++|+++|.++-+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKA------ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH------HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 455666778888888877655 444444443 3577889999999999999999999884321
Q ss_pred ------HHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHH
Q psy12373 79 ------NVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 79 ------~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~ 141 (198)
..-.++. .+|++++|.....+ .+++. ....+|..+...|++++|+.+| .+|++++.
T Consensus 183 ~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------~~al~~~~ 255 (383)
T 3ulq_A 183 LLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF------KRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHH
Confidence 1113333 45666666554322 22221 1223455555555555555442 44444443
Q ss_pred HcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 142 QHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+. .+..+..+..+|..+...|++++|
T Consensus 256 ~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 256 ESNI-----------LPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HTTC-----------GGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcc-----------chhHHHHHHHHHHHHHHCCCHHHH
Confidence 3321 133467888999999999999999
No 52
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.42 E-value=7.1e-06 Score=67.97 Aligned_cols=173 Identities=14% Similarity=0.049 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHc-------CCHHH-------HHHHHHHccCHHHHHhhh-------hccCC-----hHHHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA-------GNYEK-------AATCYIQLKNWTKIGQLL-------PHIKS-----ATTFIQYAKAKEA 60 (198)
Q Consensus 7 ~~~~~Aa~~y~~~-------g~~~~-------Ai~~y~~~~~~~~a~~l~-------~~~~~-----~~l~~~~A~~~e~ 60 (198)
|.|++|..+|.++ ++... ...+|...|+++.|.... ....+ ...+..+|..+..
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 5677777777665 33222 233455666766654443 23332 3456688999999
Q ss_pred cCCHHHHHHHHHHhcCHH--------------HHHHHHhhccCCHHHHHHHHHh-------cCCH---HHHHHHHHHHHh
Q psy12373 61 MGSYRESVGAYERAEDYD--------------NVVRVDLDHLNDIRHAVDIVKA-------KKCT---EGAKRIADYCNK 116 (198)
Q Consensus 61 ~g~~~~A~~~Y~ka~~~~--------------~av~l~~~~~~~~~~a~~l~~~-------~~~~---~~~~~~A~~~~~ 116 (198)
.|++++|+++|.++-+.. ..-.++. ..|++++|.....+ ..++ .....+|..+..
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 999999999998875431 1233444 67899988766542 1222 234468999999
Q ss_pred cCCHHHHHHHHHHcCCh---------HHHHHHH----HHcchhhHHhhhhh-hc----CCCCHHHHHHHHHHHHhCCChh
Q psy12373 117 HGDFGAAIHFLILSKCY---------QDAFNLS----QQHKKLHEFGKFLL-EE----DEPNPVELKRLAIHFEEDKGVL 178 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~---------~~A~~la----~~~~~~~~~~~~~~-l~----~~~~~~~~~~~A~~~e~~g~~~ 178 (198)
.|++++|+.+|.++-.. ...+.+. ...+..+.+.+++. +. .+..++.+..+|..|...|+++
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~ 353 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFE 353 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHH
Confidence 99999999998775321 1111111 11111111222221 01 1123456777888888888888
Q ss_pred hH
Q psy12373 179 TS 180 (198)
Q Consensus 179 ~A 180 (198)
+|
T Consensus 354 ~A 355 (378)
T 3q15_A 354 QA 355 (378)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 53
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=7.8e-06 Score=66.17 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
.+..+|..++. |++++|+++|.++ +.+.. ..++...+ ......+|..+...|++++|+..|.+
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~A------l~~~~-~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQA------AAVFE-NEERLRQA---------AELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHH------HHHHH-HTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHH------HHHHH-hCCChhHH---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556666666 7777777777666 44444 33332211 11233567777777777777777765
Q ss_pred cC
Q psy12373 130 SK 131 (198)
Q Consensus 130 ag 131 (198)
+-
T Consensus 181 al 182 (307)
T 2ifu_A 181 EK 182 (307)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 54
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=7.3e-05 Score=55.42 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC-CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN-DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~-~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
..+..+|..+...|++++|+++|.++ ++++. ..+ ++... ......+|..+...|++++|+.+|
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEE------RELLA-SLPEDPLAA---------SANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HSCCCHHHH---------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-HcCccHHHH---------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34556667777777777777776665 55555 333 22111 112335677788888888888877
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhhhh
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCSSG 195 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~~~ 195 (198)
.++ ++++...+... .....+..++..+...|++++|... +.+|++++.+
T Consensus 131 ~~a------l~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~--~~~al~~~~~ 179 (203)
T 3gw4_A 131 EKS------LVYAQQADDQV-----------AIACAFRGLGDLAQQEKNLLEAQQH--WLRARDIFAE 179 (203)
T ss_dssp HHH------HHHHHHTTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHHH
T ss_pred HHH------HHHHHhccchH-----------HHHHHHHHHHHHHHHCcCHHHHHHH--HHHHHHHHHH
Confidence 654 44444433221 1124467788888888888888211 3444444443
No 55
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.41 E-value=1.2e-05 Score=63.82 Aligned_cols=21 Identities=0% Similarity=-0.236 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCChhhH
Q psy12373 160 NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 160 ~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+..+..++..+...|++++|
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHH
Confidence 578889999999999999888
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.40 E-value=3.4e-06 Score=66.16 Aligned_cols=162 Identities=12% Similarity=0.000 Sum_probs=83.7
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC---hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------H----
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFIQYAKAKEAMGSYRESVGAYERAEDY-------D---- 78 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~---- 78 (198)
+..|.+.|++++|++.|.+. ... ...+ +..+..+|..+...|++++|++.|.++-.. .
T Consensus 22 a~~~~~~g~~~~A~~~~~~~------l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAV------FTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------GGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH------HHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34444567777777776443 111 1123 678889999999999999999999987431 1
Q ss_pred HHHHHHhhc--------cCCHHHHHHHHHh----cCCH-HHHHHHHHHHHhcCC----HHHHHHHHHHcCChHHHHHHHH
Q psy12373 79 NVVRVDLDH--------LNDIRHAVDIVKA----KKCT-EGAKRIADYCNKHGD----FGAAIHFLILSKCYQDAFNLSQ 141 (198)
Q Consensus 79 ~av~l~~~~--------~~~~~~a~~l~~~----~~~~-~~~~~~A~~~~~~g~----~~~Av~~y~~ag~~~~A~~la~ 141 (198)
..-.++. . .|++++|....++ .|+. .............++ .-....+|.+.|++++|+....
T Consensus 94 ~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1223333 4 6888888765542 3321 111000000000000 0112334444455555544442
Q ss_pred HcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhh
Q psy12373 142 QHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPC 192 (198)
Q Consensus 142 ~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l 192 (198)
+. +...+ ...++.+..++..|...|+...+ .+.|++.+|+..
T Consensus 173 ~~---------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 173 AV---------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HH---------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HH---------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 21 11222 22467888888888777444333 344444444443
No 57
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.40 E-value=4.1e-05 Score=61.39 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHc-CCHHHHHHHHHHhc
Q psy12373 26 ATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAM-GSYRESVGAYERAE 75 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~-g~~~~A~~~Y~ka~ 75 (198)
..+|...|+++.|..... ...+ ...+..+|..+... |++++|+++|.++-
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 344556667776554443 2232 34677899999996 99999999999884
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.38 E-value=9.7e-06 Score=63.95 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH----------------HHHHHHHhhccCCHHHHHHHHHhc---------C-
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY----------------DNVVRVDLDHLNDIRHAVDIVKAK---------K- 102 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----------------~~av~l~~~~~~~~~~a~~l~~~~---------~- 102 (198)
..+..+|..+...|++++|+++|.++-.. .....++. ..|++++|..+.++. +
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556677777777777777777665432 12223344 566777666554321 1
Q ss_pred CHH---HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 103 CTE---GAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 103 ~~~---~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
++. ....+|..+...|++++|+.+|.++-
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 121 22345666666677777766666553
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.37 E-value=2e-06 Score=74.28 Aligned_cols=134 Identities=12% Similarity=-0.011 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhcc---------CCHHHHHHHHHh----cC-CH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHL---------NDIRHAVDIVKA----KK-CT 104 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~---------~~~~~a~~l~~~----~~-~~ 104 (198)
.+...+..+|..+...|++++|+++|.++-. +...-.++. .. |++++|....++ .| ++
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 213 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence 3677888899999999999999999988743 223344455 66 888888776653 22 34
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHcCChH-------HH-HHH---HHHcchhhHHhhhhh--hc-CCCCHH
Q psy12373 105 EGAKRIADYCNKH--------GDFGAAIHFLILSKCYQ-------DA-FNL---SQQHKKLHEFGKFLL--EE-DEPNPV 162 (198)
Q Consensus 105 ~~~~~~A~~~~~~--------g~~~~Av~~y~~ag~~~-------~A-~~l---a~~~~~~~~~~~~~~--l~-~~~~~~ 162 (198)
.....+|..+... |++++|+..|.++-..+ .+ ..+ +...|.++....... +. .+..+.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 5555677777777 77888888877653311 11 111 223333322222110 11 234566
Q ss_pred HHHHHHHHHHhCCChhhH
Q psy12373 163 ELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 163 ~~~~~A~~~e~~g~~~~A 180 (198)
.+..++..+...|++.+|
T Consensus 294 a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777777666
No 60
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.37 E-value=0.0001 Score=63.15 Aligned_cols=97 Identities=6% Similarity=-0.034 Sum_probs=48.1
Q ss_pred ccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHhcC---HHH---HHHHHhhc----cCCHHHH
Q psy12373 32 LKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGAYERAED---YDN---VVRVDLDH----LNDIRHA 94 (198)
Q Consensus 32 ~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~~---~~~---av~l~~~~----~~~~~~a 94 (198)
.+++++|.+...+ ..++.....+|..+.. .+++++|+++|.++-+ ... .-.++. . .+++++|
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A 170 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF-EGDGVTRDYVMA 170 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 4455554444432 2355556666666666 5666666666665432 111 112222 2 3455555
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy12373 95 VDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLIL 129 (198)
Q Consensus 95 ~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ 129 (198)
+..-+ +..++.....++..+.. .+++++|+..|.+
T Consensus 171 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 171 REWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 54433 22344555555655555 5566666666555
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.37 E-value=5e-05 Score=62.80 Aligned_cols=143 Identities=17% Similarity=0.101 Sum_probs=87.2
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------H--
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------D-- 78 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~-- 78 (198)
+.+|...|++++|++.|.++ .+++..+++ ..++..+|..+...|+++.|+++|.++-+. .
T Consensus 108 g~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREA------EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH------HHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 44556778888888887654 444444443 457778999999999999999999887422 1
Q ss_pred -----HHHHHHhhccCCHHHHHHHHH-------hcCCHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373 79 -----NVVRVDLDHLNDIRHAVDIVK-------AKKCTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQ 142 (198)
Q Consensus 79 -----~av~l~~~~~~~~~~a~~l~~-------~~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~ 142 (198)
..-.++. ..|++++|..... ..+++. ....+|..+...|++++|+.+| .+|++++..
T Consensus 182 ~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~------~~al~~~~~ 254 (378)
T 3q15_A 182 IQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF------QKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHh
Confidence 1122233 4566666554332 222221 1123455555555555555443 344444433
Q ss_pred cchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 143 HKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+ .+..+..+..+|..+...|++++|
T Consensus 255 ~~------------~~~~~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 255 KV------------PDLLPKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp HC------------GGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred hC------------ChhHHHHHHHHHHHHHHCCCHHHH
Confidence 32 122367888999999999999999
No 62
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.37 E-value=3.8e-05 Score=61.95 Aligned_cols=173 Identities=9% Similarity=-0.044 Sum_probs=104.3
Q ss_pred cchHHHHHHHHHHcCCH-----HHHHHHHHHccCHHHHHhhhhc-------cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGNY-----EKAATCYIQLKNWTKIGQLLPH-------IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~-----~~Ai~~y~~~~~~~~a~~l~~~-------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+|++++|...+.....+ ...+.+|...++++.+...++. .+++.++..+|..+...|++++|++.|.+
T Consensus 47 ~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 47 QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp TTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 35555555554433321 2233444455566655444432 23677888899999999999999999999
Q ss_pred hcCH---HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHH----HHHHHHhcCCHHHHHHHHHHcCC----hHHH--
Q psy12373 74 AEDY---DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKR----IADYCNKHGDFGAAIHFLILSKC----YQDA-- 136 (198)
Q Consensus 74 a~~~---~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~----~A~~~~~~g~~~~Av~~y~~ag~----~~~A-- 136 (198)
.+++ ...++++. .+|++++|....++ .|+. .... +...+...|++++|+..|.++-. ...+
T Consensus 127 ~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 127 GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5554 34457777 78999999876653 2332 1122 23444556888888888766522 1111
Q ss_pred --HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 137 --FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 137 --~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..+..+.|.++.....+. +. .+.+++.+..++..+...|++.++
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 112234444433333221 22 456899999999999889988654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.36 E-value=1.4e-05 Score=65.50 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=92.1
Q ss_pred HHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhc
Q psy12373 27 TCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGS--------------------YRESVGAYERAE 75 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~--------------------~~~A~~~Y~ka~ 75 (198)
.+|...|+++.|...+. ...+ ..++..+|..+...|+ +++|+++|.++-
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34556677777655443 2222 3477788999999999 999999888764
Q ss_pred CH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 76 DY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 76 ~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.. .....++. ..|++++|.....+ .+++. ....+|..+...|++++|+.+|.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 32 23345555 67898888766543 33322 3346788889999999988888765
Q ss_pred CChHHH--------------HHHHHHcchhhHH----hhhhhhcC-CC----CHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KCYQDA--------------FNLSQQHKKLHEF----GKFLLEED-EP----NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~~~~A--------------~~la~~~~~~~~~----~~~~~l~~-~~----~~~~~~~~A~~~e~~g~~~~A 180 (198)
-....- ..++...|.++.. ..++.+.+ .. .+..+..+|..|...|++.+|
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 321110 1112233333221 11111111 11 256777888888888888888
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.36 E-value=2.6e-05 Score=59.58 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|...|++++|++.|.++ .++.. .++...+..+|..+...|++++|+++|.++-. +...-.
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEY------LKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH------HhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4456677778888888888654 22211 14567788899999999999999999998742 234455
Q ss_pred HHhhccCCHHHHHHHHHh----cCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 83 VDLDHLNDIRHAVDIVKA----KKC-T-------EGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~----~~~-~-------~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
++. ..|++++|....++ .|+ + .....+|..+...|++++|++.|.++=.
T Consensus 85 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 666 78999999877653 232 3 2244677888888999999999888754
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.34 E-value=2.9e-06 Score=65.90 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHcC--C-HH------HHHHHHHHccCHHHHHhhhhc-------c--C----ChHHHHHHHHHHHHcCCH
Q psy12373 7 TLDRGKWTLYESAG--N-YE------KAATCYIQLKNWTKIGQLLPH-------I--K----SATTFIQYAKAKEAMGSY 64 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g--~-~~------~Ai~~y~~~~~~~~a~~l~~~-------~--~----~~~l~~~~A~~~e~~g~~ 64 (198)
..|++|.+++.+.. + +. ....+|...|+++.|...+.+ . . ....+..+|..+...|++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 45566666665542 1 22 334455566777765544431 1 1 345677889999999999
Q ss_pred HHHHHHHHHhcCH----------------HHHHHHHhhccCCHHHHHHHHHhc---------C-CHH---HHHHHHHHHH
Q psy12373 65 RESVGAYERAEDY----------------DNVVRVDLDHLNDIRHAVDIVKAK---------K-CTE---GAKRIADYCN 115 (198)
Q Consensus 65 ~~A~~~Y~ka~~~----------------~~av~l~~~~~~~~~~a~~l~~~~---------~-~~~---~~~~~A~~~~ 115 (198)
++|+++|.++-.. .....++. ..|++++|..+.++. + ++. ....+|..+.
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998543 12334455 789999988766431 1 222 2346788899
Q ss_pred hcCCHHHHHHHHHHcCC
Q psy12373 116 KHGDFGAAIHFLILSKC 132 (198)
Q Consensus 116 ~~g~~~~Av~~y~~ag~ 132 (198)
..|++++|+.+|.++-.
T Consensus 181 ~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 181 KQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999876543
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.33 E-value=6.3e-05 Score=58.42 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc----CC----hHHHHHHHHHHHHcCCHHHHHHH
Q psy12373 7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI----KS----ATTFIQYAKAKEAMGSYRESVGA 70 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~----~~----~~l~~~~A~~~e~~g~~~~A~~~ 70 (198)
|.+++|.++|.++ .-+.....+|...|+++.|...+.+. ++ ...+..+|..+...|++++|+++
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 5566666666653 12334444666666666665544321 12 23366778888888888888888
Q ss_pred HHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 71 YERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 71 Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
|.++-. +.....++. ..|++++|....++. | ++.....+|..+-..+++++|+..|.++
T Consensus 97 ~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 97 YQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877642 233444555 677888777776542 1 2444556663333344777777777665
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.33 E-value=1.2e-06 Score=63.76 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=28.4
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+|...|++++||+.+.++-.... ..+.....+|+.+...|++++|+++|.++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p--------~~~~~~~~la~~y~~~~~~~~A~~~~~~a 57 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPR--------QKSIKGFYFAKLYYEAKEYDLAKKYICTY 57 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHH--------HHHTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445566666666554422111 11233456677777777777777777665
No 68
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.32 E-value=4.6e-05 Score=59.22 Aligned_cols=170 Identities=13% Similarity=0.077 Sum_probs=114.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----------HHHH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED-----------YDNV 80 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----------~~~a 80 (198)
-+..|...|++++|+..|.++ .++ ...++..+..+|..+...|++++|+++|.++-. +...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~------l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKL------EAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------HHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 456677778888888888654 111 223566888999999999999999999998854 3455
Q ss_pred HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH-HHHH---HHcchhh
Q psy12373 81 VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA-FNLS---QQHKKLH 147 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A-~~la---~~~~~~~ 147 (198)
..++. ..|++++|.....+ .| .+.....+|..+...|++++|++.|.++-.. ..+ ..++ ...+.++
T Consensus 81 g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 66677 78999999887653 23 3455668899999999999999999887552 111 1122 1222332
Q ss_pred H----HhhhhhhcCCCCHHHHHHHHHHHHhCCC---hhhHHhcCChhhHHhhh
Q psy12373 148 E----FGKFLLEEDEPNPVELKRLAIHFEEDKG---VLTSFRVSQQSRAMPCS 193 (198)
Q Consensus 148 ~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~---~~~A~~ag~~~~Al~l~ 193 (198)
. +..++.+ .+..+..+..++..+...|+ +++|.. .+.+|+++.
T Consensus 160 ~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~ 209 (272)
T 3u4t_A 160 KADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKP--YYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHH--HHHHHHHHH
Confidence 2 2222222 24457888888888877777 666621 256666655
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.31 E-value=2.1e-05 Score=56.96 Aligned_cols=126 Identities=11% Similarity=0.034 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHcCCHH--------HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGNYE--------KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~~~--------~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+.+++|...|.++-..+ ....+|.+.|+|++|.+.+.+ .+++..+..+|..+...|++++|+.+|.+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 67778888777763322 235677788888887666653 34788999999999999999999999998
Q ss_pred hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373 74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL 153 (198)
Q Consensus 74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~ 153 (198)
+ +++-- .++.....+|..+.+.|++++|++.|.+ +|++
T Consensus 91 a------l~~~p----------------~~~~~~~~la~~~~~~~~~~~aa~~~~~-----~al~--------------- 128 (150)
T 4ga2_A 91 S------VELNP----------------TQKDLVLKIAELLCKNDVTDGRAKYWVE-----RAAK--------------- 128 (150)
T ss_dssp H------HHHCT----------------TCHHHHHHHHHHHHHHCSSSSHHHHHHH-----HHHH---------------
T ss_pred H------HHhCC----------------CCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHH---------------
Confidence 7 54322 1345566778888888887766655421 1111
Q ss_pred hhcCCCCHHHHHHHHHHHHhCCC
Q psy12373 154 LEEDEPNPVELKRLAIHFEEDKG 176 (198)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~e~~g~ 176 (198)
+. +.+|.++...++.+..+|+
T Consensus 129 -l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 129 -LF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -HS-TTCHHHHHHHHHHHHTCCC
T ss_pred -hC-cCCHHHHHHHHHHHHHhCc
Confidence 22 3567788888888887774
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.29 E-value=8e-05 Score=58.73 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhc
Q psy12373 27 TCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGS--------------------YRESVGAYERAE 75 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~--------------------~~~A~~~Y~ka~ 75 (198)
.+|...|+++.+...+. ...+ ..++..+|..+...|+ +++|+++|.++-
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455667776554443 2333 3367788999999999 999999888763
Q ss_pred CH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 76 DY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 76 ~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.. .....++. ..|++++|....++ .+++. ....+|..+...|++++|+++|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 23344555 67889888766543 23322 2345788888999999998888765
Q ss_pred C
Q psy12373 131 K 131 (198)
Q Consensus 131 g 131 (198)
-
T Consensus 250 l 250 (338)
T 3ro2_A 250 L 250 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 71
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=4.8e-06 Score=72.70 Aligned_cols=133 Identities=8% Similarity=-0.077 Sum_probs=90.1
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhh-h-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLL-P-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI 91 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~-~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~ 91 (198)
..+...|++++|+.+|.++-.... +++ . +.+....+..+|..+...|+|++|+.+|.++ +.++...+|.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~--~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L~i~~~~lG~- 387 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQE--PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM------VDGYMKLYHH- 387 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHT--TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHSCT-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHHHHHHcCC-
Confidence 345567888888888866532221 111 1 1224567778999999999999999999998 7777755555
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC--CCHHHHHHHH
Q psy12373 92 RHAVDIVKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE--PNPVELKRLA 168 (198)
Q Consensus 92 ~~a~~l~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~--~~~~~~~~~A 168 (198)
.||+..... .+|..|...|++++|+.+|.+|-. +. ..+ ++++ .+.++...++
T Consensus 388 --------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~------i~---------~~~--lG~~Hp~~~~~~~~l~ 442 (490)
T 3n71_A 388 --------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA------IL---------LVT--HGPSHPITKDLEAMRM 442 (490)
T ss_dssp --------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HH---------HHH--TCTTSHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HH---------HHH--hCCCChHHHHHHHHHH
Confidence 234433333 688889999999999888876533 32 222 4432 2355667788
Q ss_pred HHHHhCCChhhH
Q psy12373 169 IHFEEDKGVLTS 180 (198)
Q Consensus 169 ~~~e~~g~~~~A 180 (198)
+.+.+.+.|.+|
T Consensus 443 ~~~~e~~~~~~a 454 (490)
T 3n71_A 443 QTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888888
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.29 E-value=4.1e-05 Score=60.45 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHc-----CCHH-------HHHHHHHHccCHHHHHhhhh-------ccC----ChHHHHHHHHHHHHcCC
Q psy12373 7 TLDRGKWTLYESA-----GNYE-------KAATCYIQLKNWTKIGQLLP-------HIK----SATTFIQYAKAKEAMGS 63 (198)
Q Consensus 7 ~~~~~Aa~~y~~~-----g~~~-------~Ai~~y~~~~~~~~a~~l~~-------~~~----~~~l~~~~A~~~e~~g~ 63 (198)
|.+++|..+|.++ +++. ....+|...|+++.+...+. ... ...++..+|..+...|+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 5666777666654 2322 33445556677776655543 222 24466788999999999
Q ss_pred HHHHHHHHHHhcCH--------------HHHHHHHhhccCC--------------------HHHHHHHHHh-------cC
Q psy12373 64 YRESVGAYERAEDY--------------DNVVRVDLDHLND--------------------IRHAVDIVKA-------KK 102 (198)
Q Consensus 64 ~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~--------------------~~~a~~l~~~-------~~ 102 (198)
+++|+++|.++-.. .....++. ..|+ +++|.....+ .+
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998886432 12233444 5567 7777655432 23
Q ss_pred CHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHH--------------HHHHHHcchhhHH----hhhhhhc-CCC
Q psy12373 103 CTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDA--------------FNLSQQHKKLHEF----GKFLLEE-DEP 159 (198)
Q Consensus 103 ~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A--------------~~la~~~~~~~~~----~~~~~l~-~~~ 159 (198)
++. ....+|..+...|++++|+.+|.++-....- ..+....|.++.. .+++.+. ...
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 322 2335788888999999999888776432110 1122233333322 2221121 111
Q ss_pred C----HHHHHHHHHHHHhCCChhhH
Q psy12373 160 N----PVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 160 ~----~~~~~~~A~~~e~~g~~~~A 180 (198)
+ +..+..+|..+...|++++|
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHH
Confidence 1 56778888889999999888
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.27 E-value=8.3e-05 Score=59.42 Aligned_cols=57 Identities=5% Similarity=-0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCC-hhhH
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKG-VLTS 180 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~-~~~A 180 (198)
...+|..+...|++++|+++|.+ |++++.+.+.. ...+..+..+|..+...|+ +++|
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~------al~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNK------AIEISCRINSM-----------ALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTBC-----------TTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHcCcH-----------HHHHHHHHHHHHHHHHhCCcHHHH
Confidence 44689999999999999998765 56666555332 2236788899999999995 5888
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.27 E-value=2.9e-05 Score=58.40 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=85.3
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..|...|++++|++.|.++- -+++..+..+|..+...|++++|+++|.++ +++.-
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~------- 68 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRS------INRDK------- 68 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc-------
Confidence 445556678888887776651 125678889999999999999999999887 54322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh-cCCCCHHHHHHHHHHH
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE-EDEPNPVELKRLAIHF 171 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~ 171 (198)
..+.....+|..+...|++++|++.|.++ +++......... ... .+ -.+..+..+..+|..+
T Consensus 69 ---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 69 ---------HLAVAYFQRGMLYYQTEKYDLAIKDLKEA------LIQLRGNQLIDY-KIL-GLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCSEEEC-GGG-TBCCEEEHHHHHHHHHHHH
T ss_pred ---------cchHHHHHHHHHHHHcccHHHHHHHHHHH------HHhCCCccHHHH-HHh-ccccCccchHHHHHHHHHH
Confidence 13444567888899999999999887664 322222111000 000 00 1123468899999999
Q ss_pred HhCCChhhH
Q psy12373 172 EEDKGVLTS 180 (198)
Q Consensus 172 e~~g~~~~A 180 (198)
...|++++|
T Consensus 132 ~~~g~~~~A 140 (213)
T 1hh8_A 132 AKKEEWKKA 140 (213)
T ss_dssp HHTTCHHHH
T ss_pred HHccCHHHH
Confidence 999999998
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=3.2e-05 Score=54.54 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
+-+..|-+.|++++|++.|.++ .++ ...++.++..+|..+...|++++|++.|.++ |++--
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~p----- 78 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEA------VKR--DPENAILYSNRAACLTKLMEFQRALDDCDTC------IRLDS----- 78 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH------HHhhh-----
Confidence 3455666778888888877554 222 3347788889999999999999999998887 54322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..+.....+|..+...|++++|++.|.++
T Consensus 79 -----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 79 -----------KFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 23445667899999999999998887664
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.26 E-value=8.1e-05 Score=53.75 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|.++|.++-. +.....+|...|+++.+...+.+ ..+..++..+|..+...|++++|+++|.+
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 678888888877532 23445667788888887666653 23678888999999999999999999998
Q ss_pred hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+-. +.....++. ..|++++|..+..+ .+ ++.....+|..+...|++++|+.+|.++
T Consensus 102 ~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 102 VAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 742 233455666 78999999887654 22 3455667888888888888888887654
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.25 E-value=8.4e-05 Score=50.56 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR 82 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~ 82 (198)
.-+..|...|++++|+.+|.+.- .+ ...+...+..+|..+...|++++|+++|.++-. +.....
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH------Hc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 34566777788888888876541 11 223567788899999999999999999998742 234455
Q ss_pred HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 83 VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
++. ..|++++|..+..+ .+ ++.....+|..+...|++++|+.+|.++
T Consensus 78 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 78 AYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 666 78999999877653 22 3445556788888888888888777654
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.24 E-value=6.9e-05 Score=56.07 Aligned_cols=124 Identities=19% Similarity=0.026 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHc-CCHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAM-GSYRESVGAY 71 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~-g~~~~A~~~Y 71 (198)
.|++++|.++|.++- + +.....+|...|+++.+...+.+ ..+...+..+|..+... |++++|+++|
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 377888888887642 1 22345677788888887766653 23677888999999999 9999999999
Q ss_pred HHhcC----------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 72 ERAED----------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 72 ~ka~~----------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++-. +.....++. ..|++++|.....+ .| ++.....+|..+...|++++|+..|.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 101 DKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99754 234455666 78999999877653 23 3555667899999999999999998875
No 79
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.23 E-value=7.7e-05 Score=59.62 Aligned_cols=163 Identities=5% Similarity=-0.105 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-------CH-----
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE-------DY----- 77 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~-------~~----- 77 (198)
..-+..|...|++++|+++|.+.-..... .-...........+|..+...|++++|+++|.++- +.
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 45567777778888888887643211000 00000012334556666667777777777666652 11
Q ss_pred --HHHHHHHhhccCCHHHHHHHHHh-------cCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 78 --DNVVRVDLDHLNDIRHAVDIVKA-------KKC-T----EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 78 --~~av~l~~~~~~~~~~a~~l~~~-------~~~-~----~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
...-.++. ..|++++|.....+ .++ + .....+|..+...|++++|+++|.++ ++++...
T Consensus 157 ~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka------l~~~~~~ 229 (293)
T 2qfc_A 157 IENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA------IEISCRI 229 (293)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH------HHHHHhc
Confidence 12223344 45666666554432 222 1 23446888899999999999988654 4454332
Q ss_pred chhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhhhh
Q psy12373 144 KKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPCSS 194 (198)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l~~ 194 (198)
+. ....+..+..+|..|...|++++| .. .+.+|+.++.
T Consensus 230 ~~-----------~~~~~~~~~~lg~~y~~~g~~~~Ai~~--~~~~Al~~~~ 268 (293)
T 2qfc_A 230 NS-----------MALIGQLYYQRGECLRKLEYEEAEIED--AYKKASFFFD 268 (293)
T ss_dssp TB-----------CSSHHHHHHHHHHHHHHTTCCHHHHHH--HHHHHHHHHH
T ss_pred Cc-----------HHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHHH
Confidence 21 122367888999999999999877 21 1445555543
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=1e-05 Score=62.75 Aligned_cols=57 Identities=16% Similarity=-0.004 Sum_probs=37.4
Q ss_pred HHHcCCHHHHHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 16 YESAGNYEKAATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+...|++++|+.+|.++-..-. ++.. ......++..+|..+...|++++|+++|.++
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLE--KTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA 69 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHH--HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3445777777777765532221 1111 1124567788999999999999999999987
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.21 E-value=0.0001 Score=54.39 Aligned_cols=140 Identities=10% Similarity=-0.057 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---HHH----HH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD---NVV----RV 83 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---~av----~l 83 (198)
.-+..|.+.|+++.|+..|.++-.. ..+++..+..+|..+...|++++|+.+|.++-... ... .+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 3455666677777777777554211 23477889999999999999999999999874321 111 11
Q ss_pred Hh-hccCC---HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC
Q psy12373 84 DL-DHLND---IRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE 158 (198)
Q Consensus 84 ~~-~~~~~---~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~ 158 (198)
.. ...+. .....+.....| ++.....+|..+...|++++|+..|.++-. +.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~~p~ 140 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK----------------------VNLG 140 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------------------TCTT
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH----------------------hCcc
Confidence 11 01111 111122223334 356666788888888888888777764321 2332
Q ss_pred -CCHHHHHHHHHHHHhCCChhhH
Q psy12373 159 -PNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 159 -~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++..+..++..|...|++++|
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcH
Confidence 3467888899999999988887
No 82
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.19 E-value=4.9e-05 Score=62.79 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCC----
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKC---- 103 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~---- 103 (198)
..+..+|..+...|++++|+++|.++-.. .....++. ..|++++|.....+ .++
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 46778899999999999999999887432 33445566 67888888776543 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
......+|..+...|++++|+.+|.+ |+.+....+.. ......+..+|..|...|++.+|
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNR------HLAIAQELGDR-----------IGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCH-----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHCCCh-----------HHHHHHHHHHHHHHHHhccHHHH
Confidence 12234567778888888888877754 44454443321 11346778899999999999888
No 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.19 E-value=0.00012 Score=56.80 Aligned_cols=125 Identities=9% Similarity=-0.061 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHcC--------CHHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG--------NYEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g--------~~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|.++|.++= -+.....+|...|+|+.|...+.+ ..++..+..+|..+...|++++|+++|.+
T Consensus 57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56666666666541 122344566677888887666653 23678899999999999999999999998
Q ss_pred hcCH-------HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 74 AEDY-------DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 74 a~~~-------~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+-.. ...+.++. ..|++++|..+..+ .++......++..+...++.++|+..|.++-.
T Consensus 137 a~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 137 FYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHCTTCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHhCCCChHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 8421 12233344 45788888766532 23222233455556666666666666665443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.18 E-value=2.8e-05 Score=70.87 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
..+.+..+|..+...|++++|+++|.++=.. ...-.++. .+|++++|....++ .| ..+....+|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4578889999999999999999999998422 23344555 78999998776543 23 35556678888
Q ss_pred HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+...|++++|++.|.++ ++ + .+..++.+..+|..|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kA------l~----------------l-~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRA------IQ----------------I-NPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHTTCHHHHHHHHHHH------HH----------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHH------HH----------------h-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888887653 11 1 234678889999999999999888
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.16 E-value=0.00011 Score=56.38 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--HH-
Q psy12373 3 WGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAED--YD- 78 (198)
Q Consensus 3 ~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~- 78 (198)
|.....|..| ..|.+.|++++|+..|.++ .......+ .+..+..+|..+...|++++|++.|.+.-. +.
T Consensus 2 ~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~------~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 2 NPPNEIYATA-QQKLQDGNWRQAITQLEAL------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp -CHHHHHHHH-HHHHHHTCHHHHHHHHHHH------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHH------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3333445554 4455568888888888543 22211111 246788999999999999999999988631 11
Q ss_pred ----HHH----HHHhh-----------------ccCCHHHHHHHHHh----cCCHH----HHHHHHHHHHhcCCH-HHHH
Q psy12373 79 ----NVV----RVDLD-----------------HLNDIRHAVDIVKA----KKCTE----GAKRIADYCNKHGDF-GAAI 124 (198)
Q Consensus 79 ----~av----~l~~~-----------------~~~~~~~a~~l~~~----~~~~~----~~~~~A~~~~~~g~~-~~Av 124 (198)
.+. .++.. ..|++++|+...++ .|+.. ....++......+.. -...
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11110 24677777665542 23211 111222222111111 1234
Q ss_pred HHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhCCChhhH
Q psy12373 125 HFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 125 ~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+|.+.|++.+|+....+ ++..-+.. .++.+..++..+...|++++|
T Consensus 155 ~~~~~~~~~~~A~~~~~~---------~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEG---------MLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHTCHHHHHHHHHH---------HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHH---------HHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 566667777777666532 21122322 257899999999999999888
No 86
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.15 E-value=3.4e-05 Score=56.53 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
++..+..+|..+...|++++|+++|.++ +++-- .++.....+|..+...|++++|+..
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~a------l~l~P----------------~~~~~~~~lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVA------FALGK----------------NDYTPVFHTGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHSS----------------SCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHH------HhhCC----------------CCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 5566666666666666666666666665 33221 2345566889999999999999988
Q ss_pred HHHc
Q psy12373 127 LILS 130 (198)
Q Consensus 127 y~~a 130 (198)
|.++
T Consensus 127 ~~~a 130 (151)
T 3gyz_A 127 FELV 130 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=0.00031 Score=51.90 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
...++..+|..+...|++++|+.+|.++ +.++. ..++..... .....+|..+...|++++|+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQAL------QQQAQ-KSGDHTAEH---------RALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-TTCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHH------HHHHH-HcCCcHHHH---------HHHHHHHHHHHHcCCHHHHHHH
Confidence 4567788999999999999999999988 77777 555543221 1234577788888888888877
Q ss_pred HHH
Q psy12373 127 LIL 129 (198)
Q Consensus 127 y~~ 129 (198)
|.+
T Consensus 89 ~~~ 91 (203)
T 3gw4_A 89 FLE 91 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 88
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.11 E-value=0.00015 Score=59.24 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 26 ATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..+|...|+++.+...+. ..++ ...+..+|..+...|++++|+++|.++
T Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344555566665544443 2222 225666777777888888887777765
No 89
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.08 E-value=5.8e-05 Score=63.62 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHHcCC-----------H------HHHHHHHHHccCHHHHHhhhh-------c------cCChHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGN-----------Y------EKAATCYIQLKNWTKIGQLLP-------H------IKSATTFIQYA 55 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~-----------~------~~Ai~~y~~~~~~~~a~~l~~-------~------~~~~~l~~~~A 55 (198)
+|++++|.++|.++=+ + .....+|...|++++|..... . ...+.++...|
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 3677777777766411 1 122335566677776544432 1 12345555555
Q ss_pred HHHH--HcCCHHHHHHHHHHhc
Q psy12373 56 KAKE--AMGSYRESVGAYERAE 75 (198)
Q Consensus 56 ~~~e--~~g~~~~A~~~Y~ka~ 75 (198)
..+- ..++|++|+++|.++-
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHH
Confidence 4443 3457888888888763
No 90
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00018 Score=49.60 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
..-+..|.+.|++++|+++|.++ .++ ...++.++..+|..+...|++++|++.|.++ +++.-
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~~~p---- 69 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEM------IKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA------IEKDP---- 69 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH------HHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----
Confidence 34456667778888888887554 222 2346788899999999999999999999887 54422
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.++.....+|..+...|++++|+..|.++-.
T Consensus 70 ------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 70 ------------NFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1344566788899999999999888876533
No 91
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=0.00024 Score=48.21 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.-+..|...|+++.|++.|.++- .+ ..++...+..+|..+...|++++|+++|.++ +++.-
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~----- 77 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAI------EL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERA------ICIDP----- 77 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred HHHHHHHHccCHHHHHHHHHHHH------Hc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHH------HhcCc-----
Confidence 34555666677777777665431 11 2235677788888888899999888888876 43321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHH
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIH 170 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 170 (198)
.++.....+|..+...|++++|+..|.++-. + .+.++.....++..
T Consensus 78 -----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------------~-~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 78 -----------AYSKAYGRMGLALSSLNKHVEAVAYYKKALE----------------------L-DPDNETYKSNLKIA 123 (131)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H-STTCHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------------c-CccchHHHHHHHHH
Confidence 1234455677777778887777766654321 1 23356777788888
Q ss_pred HHhCCCh
Q psy12373 171 FEEDKGV 177 (198)
Q Consensus 171 ~e~~g~~ 177 (198)
+...|++
T Consensus 124 ~~~~~~~ 130 (131)
T 2vyi_A 124 ELKLREA 130 (131)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 8777765
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.00 E-value=0.00011 Score=53.14 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=55.1
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..|.+.|++++|+.+|.++ ..+ ...++..+..+|..+...|++++|+++|.++ +++.-
T Consensus 28 g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~l~p------- 86 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQAL------CVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG------AVMDI------- 86 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST-------
T ss_pred HHHHHHcCChHHHHHHHHHH------HHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC-------
Confidence 33444455555555555322 111 2235666667777777777777777777665 33321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 87 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 87 ---------XEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp ---------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23445667899999999999999988765
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.99 E-value=5e-05 Score=57.84 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=58.6
Q ss_pred HHHHHcCCHHHHHHHHHHccCH--HHHHhhhh----ccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 14 TLYESAGNYEKAATCYIQLKNW--TKIGQLLP----HIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~--~~a~~l~~----~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..+...|+++.|+.+|.++-.. +...-... ... .+.+...+|..+...|++++|+.+|.++ +++.-
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p 85 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL------LQKAP 85 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHCC
Confidence 3444668888888888754221 11100000 000 2223334899999999999999999887 43321
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 86 ----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 86 ----------------NNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp ----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12444556778888888888888887765
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.99 E-value=0.00043 Score=52.83 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC----CHHHHHHHHHHhc---CHHHHH---HH
Q psy12373 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG----SYRESVGAYERAE---DYDNVV---RV 83 (198)
Q Consensus 14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g----~~~~A~~~Y~ka~---~~~~av---~l 83 (198)
.+|...|++++|++.|.++ . ...++..+..+|..+.. + ++++|+++|.++- +..... .+
T Consensus 26 ~~~~~~~~~~~A~~~~~~a------~----~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKA------A----AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHH------H----HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHH------H----HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444445555555555433 1 23467777788888777 6 7888888888772 222222 22
Q ss_pred Hhhc----cCCHHHHHHHHHh---cCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHc
Q psy12373 84 DLDH----LNDIRHAVDIVKA---KKC----TEGAKRIADYCNK----HGDFGAAIHFLILS 130 (198)
Q Consensus 84 ~~~~----~~~~~~a~~l~~~---~~~----~~~~~~~A~~~~~----~g~~~~Av~~y~~a 130 (198)
+. . .+++++|+...++ ..+ +.....++..+.. .+++++|+.+|.++
T Consensus 95 y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 95 LV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 33 2 4577777665553 223 4555667777766 56677777666655
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.97 E-value=0.00021 Score=54.17 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
|++++|..+|.++- + +.....+|...|+++.+...+.+ ..+..++..+|..+...|++++|+++|.+
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55555555555541 1 11234455666677766555542 23678888999999999999999999998
Q ss_pred hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+-. +.....++. ..|++++|..+.++ .+ ++.....+|..+...|++++|+..|.++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 642 234456667 78999999887654 23 3555667899999999999999988775
No 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.97 E-value=0.00014 Score=51.71 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=59.8
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..|.+.|+++.|+++|.++ ..+ ...++..+..+|..+...|++++|+++|.++ +++.-
T Consensus 25 a~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p------- 83 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQAL------CML--DHYDARYFLGLGACRQSLGLYEQALQSYSYG------ALMDI------- 83 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred HHHHHHHccHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC-------
Confidence 34455556666666665332 111 2346777888888888888888888888876 44322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 84 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 84 ---------NEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ---------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23445567899999999999999988664
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.96 E-value=0.00012 Score=63.92 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY 113 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~ 113 (198)
+...+..+|..+...|++++|+++|.++-. +...-.++. ..|++++|....++ .| ++.....+|..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456666777777777777777777776632 122334444 56677776655442 12 34455567777
Q ss_pred HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC---CChhhH
Q psy12373 114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED---KGVLTS 180 (198)
Q Consensus 114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~---g~~~~A 180 (198)
+...|++++|++.|.++-. + .+..+..+..++..+... |++++|
T Consensus 101 ~~~~g~~~~A~~~~~~al~----------------------~-~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQ----------------------L-LPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH----------------------h-CCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 7777777777766654311 1 123566777778877777 666666
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=0.00014 Score=52.85 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
..-+..|.+.|++++|+++|.++ .++ ...+..++..+|..+...|++++|+++|.++ +++.-
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~p---- 76 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQA------LSI--APANPIYLSNRAAAYSASGQHEKAAEDAELA------TVVDP---- 76 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCC----
Confidence 34456666778888888777554 222 2336788889999999999999999998887 54432
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 77 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 77 ------------KYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 12445667899999999999999988765
No 99
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=0.00052 Score=48.06 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=61.3
Q ss_pred HHHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH
Q psy12373 25 AATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH 93 (198)
Q Consensus 25 Ai~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~ 93 (198)
...+|...|+++++...+. ...+ ...+..+|..+...|++++|+++|.++ +.+.. ..++...
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~-~~~~~~~ 127 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------LAIAQ-ELKDRIG 127 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHH-HccchHh
Confidence 4455566677776655543 2222 345667899999999999999999887 77766 4444321
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
. ......+|..+...|++++|+++|.++
T Consensus 128 ~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 128 E---------GRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp H---------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1 122446788888899999998887654
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.92 E-value=0.0004 Score=58.42 Aligned_cols=168 Identities=17% Similarity=0.032 Sum_probs=96.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH-----------
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDN----------- 79 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~----------- 79 (198)
=+..|...|++++|+++|.++-...+-..... .......+..+|..+...|++++|+.+|.++-....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 35667788999999998877643322111111 122344567889999999999999999998843311
Q ss_pred -------HHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH---HHhcCCHHHHHHHHHHcCC----hHHH-HHH
Q psy12373 80 -------VVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY---CNKHGDFGAAIHFLILSKC----YQDA-FNL 139 (198)
Q Consensus 80 -------av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~---~~~~g~~~~Av~~y~~ag~----~~~A-~~l 139 (198)
...+.. ..+++++|...-++ .| +++....++.. +...++.++|++.|.++=. ...+ ..+
T Consensus 137 ~~~~~~g~~~~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 137 ELDCEEGWTRLKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 011222 23567888765443 23 34444444443 4556777778877766421 1121 111
Q ss_pred H----H---HcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 140 S----Q---QHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 140 a----~---~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+ . ..+.++.....+. +. .+..+..+..+|..|...|++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHH
Confidence 1 1 1122222222211 22 456788999999999999999888
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.92 E-value=0.0003 Score=47.66 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHh
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNK 116 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~ 116 (198)
.+..+|..+...|++++|+++|.++-. +.....++. ..|++++|..+.++. + ++.....++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 456778888888999999998887632 233455566 668888887765532 2 23344455666666
Q ss_pred cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 117 HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.|++++|+.+|.++-. + .+..+..+..++..+...|++++|
T Consensus 82 ~~~~~~A~~~~~~~~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE----------------------L-DPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCHHHHHHHHHHHHH----------------------h-CCCChHHHHHHHHHHHHHccHHHH
Confidence 6666666555443211 1 233577888899999888888887
No 102
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.91 E-value=0.00069 Score=54.41 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCC---------HHHHHHHHHHccCHHHHHhhhhc---c--CChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 9 DRGKWTLYESAGN---------YEKAATCYIQLKNWTKIGQLLPH---I--KSAT-TFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 9 ~~~Aa~~y~~~g~---------~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~-l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+++|...|+++=. +...+.++...|+++.|..+..+ + .++. ++..+|..+...|++++|.+.|.+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4677777766522 12344555566777776655542 1 2454 788889999999999999999998
Q ss_pred hcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
+-.. .....+.....|++++|..+-++ .| ++.....++.++.+.|++++|+.+|.++=..
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------- 232 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS------- 232 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 7431 11111211125888888766543 23 3445556777777778887777777654210
Q ss_pred HHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 141 QQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
. .+.++..+.+....+.+....|+++.|
T Consensus 233 ---~---------~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 233 ---G---------SLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp ---S---------SSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred ---c---------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 0 012223566777777777777777666
No 103
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=0.0004 Score=47.12 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
-.-+..|...|+++.|+.+|.++- .+ ...++.++..+|..+...|++++|+.+|.++ +.+.-...+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~~~~~~ 73 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAK------EL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKA------IEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHSTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH------hc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHH------Hhhccccch
Confidence 344566777788888888775542 11 2236778889999999999999999999887 666552222
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+... +.....+|..+...|++++|++.|.++
T Consensus 74 ~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 74 DYRQI---------AKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp CHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHH---------HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22110 233456788888888888888877654
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.86 E-value=0.00027 Score=50.40 Aligned_cols=89 Identities=26% Similarity=0.224 Sum_probs=58.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI 91 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~ 91 (198)
-+..|...|++++|+.+|.++- ++ ...+..++..+|..+...|++++|+++|.++ +++.-
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~------ 78 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAI------EL--NPSNAIYYGNRSLAYLRTECYGYALGDATRA------IELDK------ 78 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH------HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT------
T ss_pred HHHHHHHccCHHHHHHHHHHHH------Hh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc------
Confidence 3445556666676666665431 11 2236778888999999999999999998886 44322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 92 RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 92 ~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 79 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 79 ----------KYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12334556777777777777777666543
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.86 E-value=8.1e-05 Score=54.49 Aligned_cols=89 Identities=11% Similarity=-0.004 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+++|.++ +.+-- .++.....+|..+...|++++|+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~a------l~~~P----------------~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFL------CIYDF----------------YNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHHHHHHHHccHHHHHHH
Confidence 5667888999999999999999999987 43321 1344555788888899999998888
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++=. +. +.+|..+..+|..|...|++++|
T Consensus 93 ~~~al~----------------------l~-P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 93 YAVAFA----------------------LG-KNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHHH----------------------HS-SSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh----------------------hC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 866522 23 34678899999999999999998
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=0.00031 Score=57.65 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
.-+..|.+.|+++.|+.+|.++ .++..... ...++..+|..+...|++++|+++|.++
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~A------l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a--- 222 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKI------VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA--- 222 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH------HHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------HHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 3455666778888888877654 22222111 0478888999999999999999999987
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+++.- .++.....+|..+...|++++|+..|.++
T Consensus 223 ---l~~~p----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 223 ---LELDS----------------NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp ---HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHhCC----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 54422 13444567788888888888888877654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.85 E-value=0.00032 Score=56.14 Aligned_cols=137 Identities=9% Similarity=-0.068 Sum_probs=85.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVR 82 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~ 82 (198)
.+..+.+.|+++.|+..|.++ .. ...+++..+..+|..+...|++++|+..|.++-.. ...+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~a------l~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDA------WQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH------HH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 344455566666666666443 11 13347788999999999999999999999998431 11111
Q ss_pred HHhhccCCHHHHHHHH----HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC
Q psy12373 83 VDLDHLNDIRHAVDIV----KAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED 157 (198)
Q Consensus 83 l~~~~~~~~~~a~~l~----~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~ 157 (198)
+. ..++.++|.... ...| ++.....+|..+...|++++|+..|.++=. +.+
T Consensus 195 -l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~----------------------~~p 250 (287)
T 3qou_A 195 -LL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR----------------------XDL 250 (287)
T ss_dssp -HH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HCT
T ss_pred -HH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----------------------ccc
Confidence 11 223444443322 2233 355566778888878877777776654311 222
Q ss_pred -CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 -EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 -~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..++..+..++..|...|+.+.|
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcH
Confidence 22367788899999888888777
No 108
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00041 Score=50.11 Aligned_cols=101 Identities=14% Similarity=0.023 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh----------ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP----------HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~----------~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
.+.+-+..|.+.|+++.|++.|.++-....-..... ......++..+|..+...|++++|+..|.++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a--- 89 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV--- 89 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH---
Confidence 355666777888999999999977633311110000 1113367788899999999999999888887
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+++-- .++.....+|..+...|++++|+..|.++
T Consensus 90 ---l~~~p----------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 90 ---LKREE----------------TNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp ---HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HhcCC----------------cchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 55422 23445667899999999999999888765
No 109
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.85 E-value=9.9e-05 Score=63.55 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=88.4
Q ss_pred cchH-HHHHHHHHHc-----C---CHHHHHHHHHHccCHHHHHhhhhc----cCChHHHHHHHHHHHHc---------CC
Q psy12373 6 LTLD-RGKWTLYESA-----G---NYEKAATCYIQLKNWTKIGQLLPH----IKSATTFIQYAKAKEAM---------GS 63 (198)
Q Consensus 6 ~~~~-~~Aa~~y~~~-----g---~~~~Ai~~y~~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~---------g~ 63 (198)
.++| ++|.++|.++ + -+.....+|...|+++.|...+.+ -++...+..+|..+... |+
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence 3566 7777777664 1 123344566677778777666542 23567888999999999 99
Q ss_pred HHHHHHHHHHhcC--------HHHHHHHHhhcc--------CCHHHHHHHHHh----cC----CHHHHHHHHHHHHhcCC
Q psy12373 64 YRESVGAYERAED--------YDNVVRVDLDHL--------NDIRHAVDIVKA----KK----CTEGAKRIADYCNKHGD 119 (198)
Q Consensus 64 ~~~A~~~Y~ka~~--------~~~av~l~~~~~--------~~~~~a~~l~~~----~~----~~~~~~~~A~~~~~~g~ 119 (198)
+++|+++|.++-. +...-.++. .. |++++|....++ .| ++.....+|..+...|+
T Consensus 195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999742 233344444 55 788988776543 33 45566789999999999
Q ss_pred HHHHHHHHHHc
Q psy12373 120 FGAAIHFLILS 130 (198)
Q Consensus 120 ~~~Av~~y~~a 130 (198)
+++|++.|.++
T Consensus 274 ~~~A~~~~~~a 284 (474)
T 4abn_A 274 YGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 110
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.85 E-value=0.00037 Score=58.63 Aligned_cols=111 Identities=7% Similarity=-0.030 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCC-HHHHHHHHHHhcCH--------HHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGS-YRESVGAYERAEDY--------DNVV 81 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~-~~~A~~~Y~ka~~~--------~~av 81 (198)
-.+.+|...|++++|+++|.++ .++ ..++...+..+|..+...|. +++|+++|.++-.. ...-
T Consensus 102 ~lg~~~~~~g~~~~Al~~~~~a------l~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 102 YFRAVLQRDERSERAFKLTRDA------IEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHH------HHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3455667777777777777543 222 33467888899999999996 99999999988421 2222
Q ss_pred HHHhhccCCHHHHHHHHHh----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 82 RVDLDHLNDIRHAVDIVKA----K-KCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~----~-~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++. .+|++++|+...++ . .+......++..+...|++++|+.+|.++
T Consensus 174 ~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 174 VLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3344 66788887766543 2 23455556788888888888888888765
No 111
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00013 Score=57.34 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=49.6
Q ss_pred HHHHHHccCHHHHHhhhhc-------c--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------------
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-------I--K----SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------------- 77 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-------~--~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------- 77 (198)
..+|...|+++.|...+.+ . . ...++..+|..+...|++++|+++|.++-..
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455566677665554431 1 1 3345677899999999999999999887433
Q ss_pred -HHHHHHHhhccCCHHHHHHHHHh
Q psy12373 78 -DNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 78 -~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
....+++. ..|++++|..+.++
T Consensus 198 ~~~la~~~~-~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 198 KNNLASCYL-KQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHH
Confidence 22345556 67899998876643
No 112
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.84 E-value=3.5e-05 Score=66.22 Aligned_cols=98 Identities=5% Similarity=-0.110 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373 19 AGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 19 ~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l 97 (198)
.|++++|+.+|.++-.... ..+-. +.+....+..+|..+..+|+|++|+.+|.++ +.+....+|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~-~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L~i~~~~lG~------- 376 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMS-SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------IKPYSKHYPV------- 376 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHT-TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHSCS-------
T ss_pred ccCHHHHHHHHHHHHHHhh-CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH------HHHHHHHcCC-------
Confidence 4677777777765532222 00111 1124456778999999999999999999998 7777755554
Q ss_pred HHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 98 VKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 98 ~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.||+..... .+|..|...|++++|+.+|.+|-.
T Consensus 377 --~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 --YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 233333333 689999999999999999877533
No 113
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.83 E-value=0.00026 Score=53.91 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------HHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------NVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIA 111 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A 111 (198)
.++..+...|..+...|++++|+++|.++-... ..-.++. ..|++++|.....+ .|+ +.....+|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 367888899999999999999999999874321 2334455 67899998876653 233 33445678
Q ss_pred HHHHhcCCHHHHHHHHHHc
Q psy12373 112 DYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 112 ~~~~~~g~~~~Av~~y~~a 130 (198)
..+...|++++|+..|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 8888888888888777654
No 114
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=97.83 E-value=0.0017 Score=55.05 Aligned_cols=128 Identities=7% Similarity=0.026 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHH-HHH-HHHHHHcCC--HHHHHHHHHHhcCHHHHHHHHh
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTF-IQY-AKAKEAMGS--YRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~-~~~-A~~~e~~g~--~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
++-..-..-.||++.||++..+.+.|..|.-|+.. .+++++ .+. -.++.+... .-..+=..+-.+++...|.-+
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~-gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~- 224 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALD-SNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENL- 224 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHB-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHh-cCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcC-
Confidence 44444455679999999999999999999888754 456666 443 457766653 444555677789999998865
Q ss_pred hccCCHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 86 DHLNDIRHAVDIVKAKKCTE------GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
.+++|.+++.++-.+.+++ .+..+|+.++..|+...|.-.|+-||+.++.+.+=
T Consensus 225 -~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW 284 (399)
T 2pm7_A 225 -DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW 284 (399)
T ss_dssp -CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred -ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence 6899999888776554433 33478999999999999999999999999988874
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00035 Score=46.51 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.-+..|...|+++.|+.+|.++- .+ ...++..+..+|..+...|++++|+..|.++ +++.-
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~----- 69 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAI------KL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT------VDLKP----- 69 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHCT-----
T ss_pred HHHHHHHHcccHHHHHHHHHHHH------HH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH------HHhCc-----
Confidence 44566667788888887775442 11 2236778888999999999999999888876 44322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 70 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 70 -----------DWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12344556788888888888888777654
No 116
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.81 E-value=0.0007 Score=46.87 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
-.-+..|...|+++.|+.+|.++ ..+ ...++.++..+|..+...|++++|+.+|.++ +++.-
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~a------l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------l~~~p---- 74 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRA------ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA------LELDG---- 74 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH------Hhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCc----
Confidence 34556666677777777777543 222 2235677888888888888888888888776 44322
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
.++.....+|..+...|++++|+..|.++-
T Consensus 75 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 75 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 134456678899999999999998887653
No 117
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.81 E-value=0.0042 Score=50.58 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHH----------------HHHHHHhhccCCHHHHHHHHHhc----C---C---H
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYD----------------NVVRVDLDHLNDIRHAVDIVKAK----K---C---T 104 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------------~av~l~~~~~~~~~~a~~l~~~~----~---~---~ 104 (198)
+..+|..+...|++++|+++|.++-... ..-.++. ..|++++|....++. + + .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4456777777777777777776653211 1122344 567777776655431 1 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 105 EGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 105 ~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.....+|..+...|++++|+.++.++
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12234566667777777777766554
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.80 E-value=0.0016 Score=43.46 Aligned_cols=90 Identities=22% Similarity=0.384 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.-+..|...|+++.|+++|.++- ++ ...+...+..+|..+...|++++|+.+|.++ +++.-
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~~----- 74 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP----- 74 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH------HH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHhCC-----
Confidence 34556667777777777775441 11 2235677778888888888888888888776 33211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 75 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 75 -----------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 12334456777777777777777766543
No 119
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.80 E-value=0.00027 Score=49.22 Aligned_cols=88 Identities=14% Similarity=-0.020 Sum_probs=63.1
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR 92 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~ 92 (198)
+..+.+.|+++.|+.+|.++ .++ ..++...+..+|..+...|++++|+.+|.++ +++--
T Consensus 24 g~~~~~~g~~~~A~~~~~~a------l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~l~P------- 82 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAV------CQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHA------RMLDP------- 82 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred HHHHHHcCCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC-------
Confidence 34555667777777766433 222 3347788899999999999999999999887 54432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 83 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 83 ---------KDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344557888888889999998888765
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00033 Score=49.16 Aligned_cols=88 Identities=16% Similarity=0.010 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+...|..+...|+|++|+++|.++ |++.- .++.....+|..+...|++++|+..|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEA------VKRDP----------------ENAILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHhhHHHhhccHHHHHHHH
Confidence 345667899999999999999999887 44321 23445557788888888888888776
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++ ++ + .+..+..+..+|..+...|++++|
T Consensus 71 ~~a------l~----------------~-~p~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 71 DTC------IR----------------L-DSKFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHH------HH----------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH------HH----------------h-hhhhhHHHHHHHHHHHHCCCHHHH
Confidence 543 11 2 234678899999999999999988
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.79 E-value=0.00078 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..++..+|..++..|++++|.+.|.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5678889999999999999999999997
No 122
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00047 Score=47.26 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh---HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcc
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA---TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHL 88 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~---~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~ 88 (198)
-+..|...|++++|++.|.+. ... ..+++ ..+..+|..+...|++++|+++|.++ ++..- ..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~------~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~------~~~~p-~~ 72 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSF------LEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL------VSRYP-TH 72 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-TS
T ss_pred HHHHHHHhCCHHHHHHHHHHH------HHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHCC-CC
Confidence 345566678888888887543 222 11233 68888999999999999999999887 54432 10
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 89 NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 89 ~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.. .+.....+|..+...|++++|+..|.++
T Consensus 73 ~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 73 DK------------AAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp TT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 0344567888888899998888887654
No 123
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00081 Score=55.86 Aligned_cols=159 Identities=11% Similarity=0.127 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHccCHHHH-Hhhhhc--cC------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373 8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKI-GQLLPH--IK------SATTFIQYAKAKEAMGSYRESVGAYERAEDYD 78 (198)
Q Consensus 8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a-~~l~~~--~~------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~ 78 (198)
+.++|.+++ +.|++++|+++|..+-....- ...... .. ....+..+|..+...|++++|+++|.++-.+.
T Consensus 7 ~l~~a~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 7 KLEEARRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567777665 559999999999765211110 000000 00 12357789999999999999999999875331
Q ss_pred ---------HHHH----HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHcCChHHHHH
Q psy12373 79 ---------NVVR----VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD-------FGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 79 ---------~av~----l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~-------~~~Av~~y~~ag~~~~A~~ 138 (198)
..|+ .+....|+++++..+.++. -.+..+.++ ...-..+|...|+|.+|+.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKS---------IEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHH---------HHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------HHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 1111 1212356666666554431 011111111 1123455555566666665
Q ss_pred HHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 139 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 139 la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+..+.-.. .... .......+.+...++.|...|+|.+|
T Consensus 157 ~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 157 LINDLLRE--FKKL--DDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHHHH--HTTS--SCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHhc--ccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 55433110 0110 11233467889999999999999999
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.73 E-value=0.00035 Score=62.92 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=86.6
Q ss_pred cchHHHHHHHHHHcC----------------CHHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCH
Q psy12373 6 LTLDRGKWTLYESAG----------------NYEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSY 64 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g----------------~~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~ 64 (198)
.+.+++|.+.|.++- -+-....+|...|+++.|...+.+ .++...+..+|..+...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 366778877777653 122334567777888887766653 34778888999999999999
Q ss_pred HHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHH----hcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 65 RESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVK----AKK-CTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 65 ~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~----~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
++|++.|.++-.. ...-.++. .+|++++ ....+ ..| +......+|..+...|++++|+..|.++-
T Consensus 484 ~~A~~~~~~al~l~P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 9999999987421 22333444 5677666 43332 223 34556678999999999999999999886
Q ss_pred C
Q psy12373 132 C 132 (198)
Q Consensus 132 ~ 132 (198)
.
T Consensus 562 ~ 562 (681)
T 2pzi_A 562 P 562 (681)
T ss_dssp T
T ss_pred c
Confidence 4
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.72 E-value=0.00074 Score=50.43 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S-----------ATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~-----------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
..-+..|...|++++|+++|.++ .++..... . ..++..+|..+...|++++|+.+|.++
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a- 114 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEA------LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV- 114 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence 34455666677788887777544 22221111 0 267788899999999999999998887
Q ss_pred CHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 76 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 76 ~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+++.- ..+.....+|..+...|++++|+..|.++
T Consensus 115 -----l~~~p----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 115 -----LKIDK----------------NNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHST----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHhCc----------------ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 54321 23445667888888889999888887654
No 126
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.70 E-value=0.0011 Score=46.29 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI 128 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~ 128 (198)
..+..+|..+...|+|++|+++|.++ |++.- .++.....+|..+...|++++|++.|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~A------l~~~p----------------~~~~~~~nlg~~~~~~~~~~~A~~~~~ 66 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKA------IELDP----------------SNITFYNNKAAVYFEEKKFAECVQFCE 66 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 35567899999999999999999987 54422 123345568888888999999988776
Q ss_pred HcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 129 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 129 ~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+ |+++....... .......+..++..+...|++++|
T Consensus 67 ~------al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 67 K------AVEVGRETRAD----------YKLIAKAMSRAGNAFQKQNDLSLA 102 (127)
T ss_dssp H------HHHHHHHTTCC----------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred H------HHHhCcccchh----------hHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4 44444332210 001135677888888888888888
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.70 E-value=0.00038 Score=47.58 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
-.-+..|...|++++|+++|.++-. + ...+..++..+|..+...|++++|+++|.++ +++.-
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~------~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a------~~~~~---- 81 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIK------R--NPKDAKLYSNRAACYTKLLEFQLALKDCEEC------IQLEP---- 81 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHT------T--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH------HHHCT----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH------c--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH------HHhCC----
Confidence 3445666677777777777754421 1 1235677778888888888888888888776 43321
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 82 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 82 ------------TFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------CchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12344556788888888888888777644
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=0.0012 Score=45.99 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..-+..|...|+++.|+++|.++-. ..++ ..++..+|..+...|++++|+++|.++ +++.-
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~ 96 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALG---------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------IEKDG 96 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHT---------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH---------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------HhhCc
Confidence 3445566666777777776654421 1122 466677788888888888888777776 43321
Q ss_pred hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 97 ----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 97 ----------------GDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12444556788888888888888777544
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.65 E-value=0.00096 Score=53.11 Aligned_cols=82 Identities=12% Similarity=-0.039 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFL 127 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y 127 (198)
.++..+|..+...|++++|+++|.++ +.+.. ..+... ........+|..+...| ++++|+++|
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~a------l~~~~-~~~~~~---------~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKA------IEISC-RINSMA---------LIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTBCT---------THHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHH-HcCcHH---------HHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 46778999999999999999999988 77776 333311 01233457899999999 579999987
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhh
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKF 152 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~ 152 (198)
.+ |+.+++..+.......+
T Consensus 261 ~~------Al~i~~~~~~~~~~~~l 279 (293)
T 3u3w_A 261 KK------ASFFFDILEMHAYKEAL 279 (293)
T ss_dssp HH------HHHHHHHTTCTGGGGGG
T ss_pred HH------HHHHHHHhCCHHHHHHH
Confidence 55 67788877765444443
No 130
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0013 Score=46.82 Aligned_cols=106 Identities=13% Similarity=-0.009 Sum_probs=69.2
Q ss_pred CccccchHHHHHHHHHHc---CCHHH-HHHHHHHccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHH
Q psy12373 2 GWGALTLDRGKWTLYESA---GNYEK-AATCYIQLKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGA 70 (198)
Q Consensus 2 ~~~~~~~~~~Aa~~y~~~---g~~~~-Ai~~y~~~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~ 70 (198)
|+|--..+++|.++|+++ |+++- .-.+|...+.++++.+...+ ..++..+..+|..+.. .+++++|+++
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CcCCccCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 666667788888888775 22211 22334444455555444432 3466777777777777 6777777777
Q ss_pred HHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcC
Q psy12373 71 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLILSK 131 (198)
Q Consensus 71 Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag 131 (198)
|.++ + . ..++.....++..|.. .+|+++|+++|.+|-
T Consensus 84 ~~~A------a-----~-------------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 84 YSKA------C-----G-------------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHH------H-----H-------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHH------H-----c-------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 7776 1 1 2345667788888887 889999999998763
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.63 E-value=0.0014 Score=48.85 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHHcCCH-----HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 6 LTLDRGKWTLYESAGNY-----EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~~-----~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
.|++++|.++|.++-++ -....+|...|+++.|...+.+ ..+...+..+|..+...|++++|+++|.++
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a- 97 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA- 97 (213)
T ss_dssp TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH-
Confidence 47889999999877432 3345567788888887766653 236788889999999999999999999887
Q ss_pred CHHHHHHHHhhccCCHHHHHHHH-HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 76 DYDNVVRVDLDHLNDIRHAVDIV-KAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 76 ~~~~av~l~~~~~~~~~~a~~l~-~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+++.- ...... ...+. ...+ .......+|..+...|++++|+..|.++-.
T Consensus 98 -----l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 98 -----LIQLR-GNQLID-YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -----HHTTT-TCSEEE-CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----HHhCC-CccHHH-HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55433 111000 00000 0001 124456789999999999999999887644
No 132
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.62 E-value=0.00099 Score=49.41 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhcc------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHI------K----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVV 81 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~------~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av 81 (198)
-+..+.+.|+++.|+++|.++ .++.... . +..++...|..+...|+|++|+.+|.++ |
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kA------L~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA------L 84 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRA------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA------L 84 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred HHHHHHHCCCHHHHHHHHHHH------HhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH------H
Confidence 344455679999999998766 3333321 1 2237888999999999999999999988 6
Q ss_pred HHHhhccCCHHHHHHHHHhcCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 82 RVDLDHLNDIRHAVDIVKAKKC-TEGA----KRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~~~~-~~~~----~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+++- ..+.. .|+ .... ...|..+...|++++|+..|.++-
T Consensus 85 ~l~n-~~~e~---------~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 85 HYFN-RRGEL---------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHH-HHCCT---------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hhhh-ccccC---------CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6522 11111 122 2233 567888999999999999887653
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00089 Score=46.02 Aligned_cols=88 Identities=17% Similarity=-0.009 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+...|..+...|++++|+++|.++ +++.- .++.....+|..+...|++++|+..|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEM------IKRAP----------------EDARGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----------------CChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 355677899999999999999999887 54432 12344556788888888888887776
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++=. + .+..+..+..+|..+...|++++|
T Consensus 62 ~~al~----------------------~-~p~~~~~~~~lg~~~~~~~~~~~A 91 (126)
T 3upv_A 62 NKAIE----------------------K-DPNFVRAYIRKATAQIAVKEYASA 91 (126)
T ss_dssp HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH----------------------h-CCCcHHHHHHHHHHHHHHhCHHHH
Confidence 54311 1 234688899999999999999888
No 134
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.61 E-value=0.0011 Score=51.55 Aligned_cols=118 Identities=9% Similarity=0.000 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHcC-----C------HHHHHHHHHHccCHHHHHhhhhcc--------CChHHHHHHHHHHHH------
Q psy12373 6 LTLDRGKWTLYESAG-----N------YEKAATCYIQLKNWTKIGQLLPHI--------KSATTFIQYAKAKEA------ 60 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g-----~------~~~Ai~~y~~~~~~~~a~~l~~~~--------~~~~l~~~~A~~~e~------ 60 (198)
.|+|++|..+|.+.= + +-....+|...|+|+.|...+.++ ..+..+..+|..+..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 378999999998762 2 134556788899999987766531 135678889999999
Q ss_pred --cCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 61 --MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK--CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 61 --~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~--~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.|++++|+..|.++ ++..- .......+........ .......+|..+...|++++|+..|.++
T Consensus 108 ~~~~~~~~A~~~~~~~------l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLF------IDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp SCCHHHHHHHHHHHHH------HHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH------HHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999987 44443 2222222221111110 1112345566666777777777766654
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.61 E-value=0.00032 Score=46.36 Aligned_cols=92 Identities=20% Similarity=0.108 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.-+..|...|++++|+.+|.++ ..+ ...+...+..+|..+...|++++|+++|.++ +++.- +
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a------~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~---~- 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKA------IQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYV------INVIE---D- 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTSC---C-
T ss_pred HHHHHHHHhhhHHHHHHHHHHH------HHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCc---c-
Confidence 3456677778888888887544 222 2235677888999999999999999998887 43322 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHc
Q psy12373 91 IRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILS 130 (198)
Q Consensus 91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~a 130 (198)
...+.....+|..+... |++++|++++.++
T Consensus 73 ----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 73 ----------EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp ----------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred ----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 01344556778888888 8888888887765
No 136
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.60 E-value=0.0011 Score=57.79 Aligned_cols=123 Identities=6% Similarity=-0.083 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER 73 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k 73 (198)
+++++|.++|.++=. +.....+|...|++++|...+.+ .++...+..+|..+...|++++|+++|.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 355666666655421 22334456666777776655542 23678899999999999999999999998
Q ss_pred hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHc
Q psy12373 74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKH---GDFGAAIHFLILS 130 (198)
Q Consensus 74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~---g~~~~Av~~y~~a 130 (198)
+-. +...-.++. ..|++++|....++ .| ++.....++..+... |++++|++.|.++
T Consensus 83 al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 742 234445666 78999999877653 23 355566789999999 9999999988875
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.60 E-value=0.00054 Score=49.38 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+.+|.++ +.+.- .++.....+|..+...|++++|+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQAL------CVLDH----------------YDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHH------HHcCc----------------ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567778899999999999999999876 43322 1344455678888888888888877
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. +. +.++..+..+|..|...|++++|
T Consensus 78 ~~~al~----------------------l~-p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 78 YSYGAV----------------------MD-IXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp HHHHHH----------------------HS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh----------------------cC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 765311 22 34677888899999999999888
No 138
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.60 E-value=0.0071 Score=49.19 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh----HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA----TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~----~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+.++...|+++.|+..+.++ ..... .+++ ..+..+|..+...|++++|.++|.++
T Consensus 21 a~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 79 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLA------LEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------HHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34555667777777766543 22221 1122 24567788899999999999999887
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.0011 Score=56.77 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYERAEDY 77 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~ 77 (198)
.-+..|.+.|+++.|+..|.++ .++..... ...++..+|..+...|+|++|+.+|.++
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~A------l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a--- 343 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKI------VSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA--- 343 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHhCCCHHHHHHHHHHH------HHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 3455666778888888888655 22222211 1467788899999999999999999887
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+++.- .++.....+|..+...|++++|+..|.++-.
T Consensus 344 ---l~~~p----------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 344 ---LGLDS----------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp ---HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HhcCC----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44322 1344456778888888888888888877644
No 140
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00012 Score=62.76 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHH
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV 95 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~ 95 (198)
+.|++++|+.+|.++-.... +++. +.....++..+|..+...|+|++|+.+|.++ +.++...+|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~--~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~------L~i~~~~lg~----- 365 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNS--ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT------MEPYRIFFPG----- 365 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSS--CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHHSCS-----
T ss_pred hhccHHHHHHHHHHHHHhcc--CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH------HHhHHHHcCC-----
Confidence 44666777666654311110 0000 1113456778899999999999999999998 8777755554
Q ss_pred HHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 96 DIVKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 96 ~l~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.||+..... .+|..+...|++++|+.+|.+|-.
T Consensus 366 ----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 ----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 234333333 689999999999999988876543
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.57 E-value=0.00066 Score=48.09 Aligned_cols=89 Identities=8% Similarity=-0.024 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+++|.++ +.+.- .++.....+|..+...|++++|+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQAL------CMLDH----------------YDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHH------HHhCC----------------ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566778899999999999999999876 43221 1334455678888888888888877
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++=. + .+.+|..+..+|..|...|++++|
T Consensus 75 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 75 YSYGAL----------------------M-DINEPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp HHHHHH----------------------H-CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh----------------------c-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 765311 2 234677888899999999999888
No 142
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.56 E-value=0.0017 Score=47.64 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
.....|..+...|++++|+..|.++ +.+.- .++.....+|..+...|++++|+..|.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTL------SDELQ----------------SRGDVKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTS------CHHHH----------------TSHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556777778888888888888776 22111 1334455667777777777777777776
Q ss_pred cCChH---HH------HHHHHHcch---hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 130 SKCYQ---DA------FNLSQQHKK---LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 130 ag~~~---~A------~~la~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+-... .. +.+....+. ...+..++.+ .+.++..+..+|..+...|++++|
T Consensus 66 a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHH
Confidence 64321 11 111111111 2233333222 345789999999999999999998
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.55 E-value=0.0013 Score=45.39 Aligned_cols=89 Identities=13% Similarity=-0.095 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+.+|.++ +++.- .++.....+|..+...|++++|+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~~----------------~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNP----------------LVAVYYTNRALCYLKMQQPEQALAD 65 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHH------HhhCc----------------CcHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6778889999999999999999999887 54432 1234455678888888888887766
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. +. +..+..+..+|..+...|++.+|
T Consensus 66 ~~~al~----------------------~~-p~~~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 66 CRRALE----------------------LD-GQSVKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHHH----------------------HC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH----------------------hC-chhHHHHHHHHHHHHHHhhHHHH
Confidence 544321 12 34678888999999999999888
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.54 E-value=0.0012 Score=46.91 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...+..+|..+...|++++|+++|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~a 39 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQA 39 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 456778899999999999999999887
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.54 E-value=0.0011 Score=47.85 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|+|++|+++|.++ +++.- .++.....+|..+...|++++|+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQA------LSIAP----------------ANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------cCHHHHHHHHHHHHHccCHHHHHHH
Confidence 4567788899999999999999999887 54432 1234455678778888888887777
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++=. + .+..+..+..+|..|...|++++|
T Consensus 68 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 68 AELATV----------------------V-DPKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH----------------------h-CCCCHHHHHHHHHHHHHccCHHHH
Confidence 654311 1 234578888889988888888888
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.53 E-value=0.0028 Score=48.36 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----------HHHHHHHHhhccCCHHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAED-----------YDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----------~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
++..+...|..+...|++++|+..|.++-. +.....++. ..|+|++|+....
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~ 65 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAID 65 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence 356677889999999999999999998642 122344555 6789999876654
No 147
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0017 Score=53.86 Aligned_cols=141 Identities=10% Similarity=0.081 Sum_probs=82.8
Q ss_pred HHHHHHHHHccCHHHHHhhhhc-------cC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------
Q psy12373 23 EKAATCYIQLKNWTKIGQLLPH-------IK----SATTFIQYAKAKEAMGSYRESVGAYERAEDY-------------- 77 (198)
Q Consensus 23 ~~Ai~~y~~~~~~~~a~~l~~~-------~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------------- 77 (198)
.....+|...|+|+.+...+.. ++ .+.+...++......|+++.|+++|.++-.+
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3445667777777776555532 22 1234456677888889999999999887543
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhc-------C-CH---HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373 78 DNVVRVDLDHLNDIRHAVDIVKAK-------K-CT---EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL 146 (198)
Q Consensus 78 ~~av~l~~~~~~~~~~a~~l~~~~-------~-~~---~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~ 146 (198)
.....++. ..|++++|..+..+. . .+ +.....++.+...|++++|..+|.++-. +....+..
T Consensus 139 ~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~ 211 (434)
T 4b4t_Q 139 IKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART------AANSIYCP 211 (434)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHSCCC
T ss_pred HHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH------HhhcCCCc
Confidence 24456666 668888887765431 1 11 1223456777777777777777655432 22111110
Q ss_pred hHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 147 HEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
. ......+...+..+...|+|.+|
T Consensus 212 ~----------~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 212 T----------QTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp H----------HHHHHHHHHHHHHTTSSSCHHHH
T ss_pred h----------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 00123455566677777777777
No 148
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00034 Score=60.93 Aligned_cols=110 Identities=10% Similarity=-0.016 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHc----------CC------HHHHHHHHHHccCHHHHHhhhhc-------------cCChHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESA----------GN------YEKAATCYIQLKNWTKIGQLLPH-------------IKSATTFIQYAK 56 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~----------g~------~~~Ai~~y~~~~~~~~a~~l~~~-------------~~~~~l~~~~A~ 56 (198)
.|+|++|..+|+++ .+ +......|...|+|++|..+..+ .+....+..+|.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46788888888765 12 33445667777777777665542 113456678999
Q ss_pred HHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 57 AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 57 ~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.+...|++++|+.+|.+| +.+....+|. .||..... .++++.+...+.+++|..+|.++
T Consensus 402 ~~~~~G~~~eA~~~~~~A------l~i~~~~lG~---------~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKA------YAILLVTHGP---------SHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHTTCHHHHHHHHHHH------HHHHHHHTCT---------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH------HHHHHHHhCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 7777755665 23433332 36777888889999999999887
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.49 E-value=0.00076 Score=49.20 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=32.4
Q ss_pred HcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..|++++|++.|.++ ..+ ...++..+..+|..+...|++++|+++|.++
T Consensus 22 ~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 70 (177)
T 2e2e_A 22 SQQNPEAQLQALQDK------IRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70 (177)
T ss_dssp -----CCCCHHHHHH------HHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556665555432 111 2346788889999999999999999999887
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.48 E-value=0.0026 Score=48.36 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhc---CHHHH---HHHHhhccC----CHHHHHHHHH---hcCCHHHHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAE---DYDNV---VRVDLDHLN----DIRHAVDIVK---AKKCTEGAKRIAD 112 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---~~~~a---v~l~~~~~~----~~~~a~~l~~---~~~~~~~~~~~A~ 112 (198)
.++..+..+|..+...+++++|+++|.++- +.... -.++. . + ++++|+..-+ ...++.....+|.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVEAGSKSGEIVLAR 93 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 678899999999999999999999999984 33222 22333 3 5 7888877654 3456777778888
Q ss_pred HHHh----cCCHHHHHHHHHHcCCh
Q psy12373 113 YCNK----HGDFGAAIHFLILSKCY 133 (198)
Q Consensus 113 ~~~~----~g~~~~Av~~y~~ag~~ 133 (198)
.+.. .+++++|+++|.++-..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc
Confidence 8876 78888888888887653
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.48 E-value=0.00099 Score=53.03 Aligned_cols=97 Identities=14% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHccCHHHHHhhhh-------ccCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373 27 TCYIQLKNWTKIGQLLP-------HIKS-A----TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~-------~~~~-~----~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a 94 (198)
.+|...|++++|..... ..++ + .++..+|..+...|++++|+++|.++ +.+.. ..+...
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka------l~~~~-~~~~~~-- 233 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA------IEISC-RINSMA-- 233 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTBCS--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH------HHHHH-hcCcHH--
Confidence 45556666666544443 2222 1 57788999999999999999999998 66664 322211
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCHHHH-HHHHHHcCChHHHHHHHHHcch
Q psy12373 95 VDIVKAKKCTEGAKRIADYCNKHGDFGAA-IHFLILSKCYQDAFNLSQQHKK 145 (198)
Q Consensus 95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~A-v~~y~~ag~~~~A~~la~~~~~ 145 (198)
........+|..+...|++++| ..+|. +|+.+++..+.
T Consensus 234 -------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~------~Al~~~~~~~~ 272 (293)
T 2qfc_A 234 -------LIGQLYYQRGECLRKLEYEEAEIEDAYK------KASFFFDILEM 272 (293)
T ss_dssp -------SHHHHHHHHHHHHHHTTCCHHHHHHHHH------HHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHHHHHcCCcHHHHHHHHH------HHHHHHHHhCc
Confidence 0122345789999999999999 55554 56667766654
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.47 E-value=0.0015 Score=52.05 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN 89 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~ 89 (198)
..-+..|.+.|+++.|+..|.++ ..+ ...+..++..+|..+...|++++|++.|.++ +++.-
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~p---- 69 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRA------ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA------LELDG---- 69 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------TTSCT----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----
Confidence 34456667778888888887544 222 3346788889999999999999999988887 22110
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
.++.....+|..+...|++++|+..|.++-.
T Consensus 70 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 70 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234455678888888888888888876543
No 153
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.46 E-value=0.0017 Score=58.49 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=39.3
Q ss_pred HHcCCHHHHHHHHHHcc--CHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 17 ESAGNYEKAATCYIQLK--NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 17 ~~~g~~~~Ai~~y~~~~--~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...|++++|++.|.++- .|+....+ ..++...+..+|..+...|++++|++.|.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 459 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDL 459 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45688888888887552 22211111 2336788999999999999999999999987
No 154
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.42 E-value=0.016 Score=49.27 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHc----CCHHHHHHHHHHhc--CHHHHH---HH-H--hhccCCHHHHHHHHH---hcCCHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAM----GSYRESVGAYERAE--DYDNVV---RV-D--LDHLNDIRHAVDIVK---AKKCTEGAKRIA 111 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~----g~~~~A~~~Y~ka~--~~~~av---~l-~--~~~~~~~~~a~~l~~---~~~~~~~~~~~A 111 (198)
+...+..+|..+... +++++|+++|.++- +..... .+ + . ..+++++|+...+ +.+++.....+|
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~-~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg 290 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFP-ELGDVEQMMKYLDNGRAADQPRAELLLG 290 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSG-GGCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444447888888766 79999999999885 222222 22 2 3 4688888877665 345677788888
Q ss_pred HHHHhcC-----CHHHHHHHHHHcC--ChHHHHHHHHH--cc-----hhhHHhhhhh-hcCCCCHHHHHHHHHHHHh---
Q psy12373 112 DYCNKHG-----DFGAAIHFLILSK--CYQDAFNLSQQ--HK-----KLHEFGKFLL-EEDEPNPVELKRLAIHFEE--- 173 (198)
Q Consensus 112 ~~~~~~g-----~~~~Av~~y~~ag--~~~~A~~la~~--~~-----~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~--- 173 (198)
..|. .| ++++|+.+|.++- ...--+.|+.- .| .++....... ......+.....++..|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKG 369 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTT
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCC
Confidence 8887 55 8999999999885 22222333321 11 1111111111 1244567778888887764
Q ss_pred -CCChhhH
Q psy12373 174 -DKGVLTS 180 (198)
Q Consensus 174 -~g~~~~A 180 (198)
..++.+|
T Consensus 370 ~~~d~~~A 377 (452)
T 3e4b_A 370 TKPDPLNA 377 (452)
T ss_dssp BCCCHHHH
T ss_pred CCCCHHHH
Confidence 3466666
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.41 E-value=0.002 Score=42.66 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+++|.++ +++.- .++.....+|..+...|++++|+..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEA------IKLDP----------------HNHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHhhccHHHHHHHH
Confidence 456677888888999999999988887 33221 12344456677777777777776655
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++-. + .+..+..+..+|..+...|++++|
T Consensus 62 ~~~~~----------------------~-~~~~~~~~~~~a~~~~~~~~~~~A 91 (118)
T 1elw_A 62 CKTVD----------------------L-KPDWGKGYSRKAAALEFLNRFEEA 91 (118)
T ss_dssp HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH----------------------h-CcccHHHHHHHHHHHHHHhhHHHH
Confidence 43211 1 233577888888888888888887
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.41 E-value=0.0003 Score=48.17 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHccCHHHHHhhh-hccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373 19 AGNYEKAATCYIQLKNWTKIGQLL-PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 19 ~g~~~~Ai~~y~~~~~~~~a~~l~-~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l 97 (198)
.|++++|+.+|.++-. +- ...++...+..+|..+...|++++|+++|.++ +++.-
T Consensus 3 ~g~~~~A~~~~~~al~------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~p------------ 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------VKQFP------------ 58 (117)
T ss_dssp ----CCCHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT------------
T ss_pred CCcHHHHHHHHHHHHH------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC------------
Confidence 3566666666654422 10 00124567888999999999999999999887 54432
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 59 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 59 ----NHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp ----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12444557888888888888888877665
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.36 E-value=0.0015 Score=52.87 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhc--C------HHHHHHHHhhccCCHHHHHHHHHhcC---CH----HHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAE--D------YDNVVRVDLDHLNDIRHAVDIVKAKK---CT----EGAKRIAD 112 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--~------~~~av~l~~~~~~~~~~a~~l~~~~~---~~----~~~~~~A~ 112 (198)
..+...+|..+-..|+|++|.+.|...- . |..++ ++. ..++|++|....+... ++ +....++.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 4677789999999999999999998763 2 23333 555 6799999999886432 22 24567899
Q ss_pred HHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 113 YCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 113 ~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++..|++++|+..|.++..-. ..+...++..+..+..+...|+.++|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~--------------------~~P~~~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSP--------------------AGEACARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTST--------------------TTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCC--------------------CCccccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998763200 00122445666677777777777666
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.36 E-value=0.0012 Score=53.46 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=67.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-----HHHHHHh-
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD-----NVVRVDL- 85 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~-----~av~l~~- 85 (198)
.+.++...|+++.|.++|...-. .-++....+.+|..+...|+|++|+.+|.++..+. ..+.+++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---------~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---------AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---------TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 34555555666666655543321 11111245556677777777777777777776431 2233222
Q ss_pred ---hccCCHHHHHHHHHhc---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 86 ---DHLNDIRHAVDIVKAK---K-----CTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 86 ---~~~~~~~~a~~l~~~~---~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+.+|++++|.....+. + .++.....|..+.+.|+.++|+..|.++-
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677777776655432 2 12345678888999999999999998763
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.0027 Score=48.00 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHcC--CHHH----------------------HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESAG--NYEK----------------------AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKA 57 (198)
Q Consensus 7 ~~~~~Aa~~y~~~g--~~~~----------------------Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~ 57 (198)
|++++|..+|.++= +++. ...+|...|++++|...+.+ .++...+..+|..
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 67888888887752 3322 45667788888888766653 3478899999999
Q ss_pred HHHcCCHHHHHHHHHHh
Q psy12373 58 KEAMGSYRESVGAYERA 74 (198)
Q Consensus 58 ~e~~g~~~~A~~~Y~ka 74 (198)
+...|++++|+++|.++
T Consensus 98 ~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 98 QVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999999998
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.33 E-value=0.0029 Score=45.99 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHH-HHHcCCH--HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373 26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKA-KEAMGSY--RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI 97 (198)
Q Consensus 26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~-~e~~g~~--~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l 97 (198)
..+|...|+++.|...+.+ ..++.++..+|.. +...|++ ++|+.+|.++ +++.-
T Consensus 51 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a------l~~~p------------ 112 (177)
T 2e2e_A 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA------LALDS------------ 112 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH------HHHCT------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH------HHhCC------------
Confidence 3445555555555444432 2367888889998 7788998 9999888876 44322
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|+..|.++
T Consensus 113 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 113 ----NEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 12344557888888899999988887764
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0022 Score=53.49 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH------------------------HHHHHHHhhccCCHHHHHHHHHh----
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY------------------------DNVVRVDLDHLNDIRHAVDIVKA---- 100 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------------------------~~av~l~~~~~~~~~~a~~l~~~---- 100 (198)
..+..+|..+...|++++|+++|.++-.+ ...-.++. .+|++++|...+++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHh
Confidence 44667788888888888888888877431 11222333 45666666555442
Q ss_pred cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhh
Q psy12373 101 KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLT 179 (198)
Q Consensus 101 ~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~ 179 (198)
.| ++.....+|..+...|++++|+..|.++-. +. +.++.....++..+...+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~----------------------l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE----------------------IA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------------hC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 11 234444566666666666666655544321 12 2356666667777666666655
Q ss_pred H
Q psy12373 180 S 180 (198)
Q Consensus 180 A 180 (198)
+
T Consensus 360 a 360 (370)
T 1ihg_A 360 K 360 (370)
T ss_dssp H
T ss_pred H
Confidence 5
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.004 Score=41.37 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
.++.++..+|..+...|++++|+++|.++ +++.- ..+.....+|..+...|++++|++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEEL------VETDP----------------DYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 46778889999999999999999999887 54432 123345678999999999999999
Q ss_pred HHHHcCChHHHHHHHHHcchhh
Q psy12373 126 FLILSKCYQDAFNLSQQHKKLH 147 (198)
Q Consensus 126 ~y~~ag~~~~A~~la~~~~~~~ 147 (198)
.|.+ |+++....+...
T Consensus 63 ~~~~------al~l~~~~~~~~ 78 (100)
T 3ma5_A 63 TYAQ------GIEVAREEGTQK 78 (100)
T ss_dssp HHHH------HHHHHHHHSCHH
T ss_pred HHHH------HHhhhhcCCchh
Confidence 8876 566665555443
No 163
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.002 Score=42.61 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+++|.++ +++.- .++.....+|..+...|++++|+..|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQL------ITAQP----------------QNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HhcCC----------------CCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456778899999999999999999887 54422 12344556788888888888887777
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCC-----CHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP-----NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++-. +.++. .+..+..++..+...|++..|
T Consensus 62 ~~al~----------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 62 QQGLR----------------------YTSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHT----------------------SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHH----------------------hCCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 65432 12211 156677778877777766665
No 164
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.28 E-value=0.0081 Score=47.82 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+.+.+...|..+...|++++|+..|.++ +.+.= .++.....+|..+...|++++|+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDA------WQLSN----------------QNGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTT----------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHH------HHhCC----------------cchhHHHHHHHHHHHCCCHHHHHHH
Confidence 4456667777777888888888777776 22111 1234445667777777777777777
Q ss_pred HHHcCChH---------HHHHHHHHcch---hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQ---------DAFNLSQQHKK---LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~---------~A~~la~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-..+ -++.+...... ...+..++.+ .+.+++.+..+|..+...|++++|
T Consensus 174 l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 174 LXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHH
Confidence 77764311 01111111111 1122222112 456789999999999999999998
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.27 E-value=0.0015 Score=42.95 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+.+|.++ +++.- .++.....+|..+...|++++|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKA------IQLDP----------------EESKYWLMKGKALYNLERYEEAVDC 62 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHH------HHHCC----------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHhCc----------------CCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455667888889999999999998877 44322 1233445677777777877777776
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhC-CChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEED-KGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~-g~~~~A 180 (198)
|.++-. +. +. .+..+..+|..+... |++++|
T Consensus 63 ~~~a~~----------------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (112)
T 2kck_A 63 YNYVIN----------------------VI-EDEYNKDVWAAKADALRYIEGKEVEA 96 (112)
T ss_dssp HHHHHH----------------------TS-CCTTCHHHHHHHHHHHTTCSSCSHHH
T ss_pred HHHHHH----------------------hC-cccchHHHHHHHHHHHHHHhCCHHHH
Confidence 654311 11 23 678889999999888 888887
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.26 E-value=0.0047 Score=42.06 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
+...|..+...|++++|++.|.++ ++..- . .. ..+.....+|..+...|++++|+..|.++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~------~~~~p-~--~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSF------LELYP-N--GV----------YTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------HHHCS-S--ST----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH------HHHCC-C--Cc----------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456788888888888888888775 43322 1 10 00134556777777788887777766543
Q ss_pred CChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~g~~~~A 180 (198)
-. +.++. .+..+..+|..+...|++++|
T Consensus 66 ~~----------------------~~p~~~~~~~~~~~la~~~~~~g~~~~A 95 (129)
T 2xev_A 66 VS----------------------RYPTHDKAAGGLLKLGLSQYGEGKNTEA 95 (129)
T ss_dssp HH----------------------HCTTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HH----------------------HCCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 11 12221 277888899999899998888
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.26 E-value=0.005 Score=41.35 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+++|.++ +.+.- .++.....+|..+...|++++|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKA------IELNP----------------ANAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHH------HHcCC----------------CCHHHHHHHHHHHHHhhchHHHHHH
Confidence 3456777899999999999999998887 43321 1234455677878888888877777
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. + .+.++..+..+|..+...|++++|
T Consensus 69 ~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 69 CERAIC----------------------I-DPAYSKAYGRMGLALSSLNKHVEA 99 (131)
T ss_dssp HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHh----------------------c-CccCHHHHHHHHHHHHHhCCHHHH
Confidence 654311 1 234578889999999999999988
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.25 E-value=0.0053 Score=40.84 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+++|.++ ++..- .++.....+|..+...|++++|+.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~ 66 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP----------------NNAEAWYNLGNAYYKQGDYDEAIEYY 66 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHCc----------------CcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456778899999999999999999887 33211 12333445666667777777776666
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++-. + .+.++..+..++..+...|++++|
T Consensus 67 ~~~~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A 96 (125)
T 1na0_A 67 QKALE----------------------L-DPNNAEAWYNLGNAYYKQGDYDEA 96 (125)
T ss_dssp HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH----------------------h-CCccHHHHHHHHHHHHHhcCHHHH
Confidence 54311 1 123456666677777777777666
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.23 E-value=0.0037 Score=44.91 Aligned_cols=104 Identities=16% Similarity=0.022 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc--cCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH--LNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAA 123 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~--~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~A 123 (198)
....+...|..+...|+|++|+.+|.++ ++++-.. ...+..... ....+ .......+|..+...|++++|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~a------l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDA------LTRLDTLILREKPGEPEW-VELDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHHHTSCTTSHHH-HHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3456778899999999999999999998 6664310 001100000 00011 122334566666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 124 IHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 124 v~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+..|.++ +.+ .+..+..+..+|..+...|+|++|
T Consensus 83 ~~~~~~a----------------------l~~-~p~~~~a~~~~g~~~~~~g~~~~A 116 (162)
T 3rkv_A 83 EETSSEV----------------------LKR-EETNEKALFRRAKARIAAWKLDEA 116 (162)
T ss_dssp HHHHHHH----------------------HHH-STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH----------------------Hhc-CCcchHHHHHHHHHHHHHhcHHHH
Confidence 6555432 112 245678888899999999998888
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.18 E-value=0.0033 Score=42.39 Aligned_cols=95 Identities=8% Similarity=0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+.+|.++ +.+.- .++.....+|..+...|++++|+.+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKA------KELDP----------------TNMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH------HhcCC----------------ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 355677889999999999999999887 44322 12344556788888888888888776
Q ss_pred HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.++ +.+....+.. ....+..+..+|..+...|++++|
T Consensus 62 ~~~------~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~~~~~A 98 (131)
T 1elr_A 62 EKA------IEVGRENRED----------YRQIAKAYARIGNSYFKEEKYKDA 98 (131)
T ss_dssp HHH------HHHHHHSTTC----------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH------Hhhccccchh----------HHHHHHHHHHHHHHHHHhccHHHH
Confidence 654 2222111000 000156778888888888888888
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.17 E-value=0.00073 Score=58.32 Aligned_cols=86 Identities=27% Similarity=0.229 Sum_probs=61.9
Q ss_pred HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA 94 (198)
Q Consensus 15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a 94 (198)
.|.+.|++++|+++|.++ .++ ..++...+..+|..+...|++++|+++|.++ +++.-
T Consensus 15 ~~~~~g~~~~A~~~~~~A------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~l~p--------- 71 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQA------IEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRA------IELDK--------- 71 (477)
T ss_dssp STTTTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHSCT---------
T ss_pred HHHHhCCHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC---------
Confidence 345567788888777544 222 3346788899999999999999999999887 43311
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 95 VDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++.....+|..+...|++++|++.|.++
T Consensus 72 -------~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 72 -------KYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp -------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344557788888888888888887654
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.14 E-value=0.0079 Score=47.79 Aligned_cols=89 Identities=15% Similarity=-0.087 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+...|..+...|++++|+++|.++ +.+.- .++.....+|..+...|++++|+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~la~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNP----------------LVAVYYTNRALCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCS----------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4567778899999999999999999887 44321 1344455678888888888888777
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. + .+.++..+..+|..+...|++++|
T Consensus 61 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 61 CRRALE----------------------L-DGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHHTT----------------------S-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH----------------------h-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 665533 1 234577788888888888888887
No 173
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.14 E-value=0.014 Score=50.17 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=76.5
Q ss_pred HHHHHHHHcCC---H------HHHHHHHHHccCHHHHHhhhhc---cC--Ch-HHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 11 GKWTLYESAGN---Y------EKAATCYIQLKNWTKIGQLLPH---IK--SA-TTFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 11 ~Aa~~y~~~g~---~------~~Ai~~y~~~~~~~~a~~l~~~---~~--~~-~l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
+|...|+++=. + ...+.++...|++++|..+..+ ++ ++ .++..++..+...|++++|.++|.++-
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66677766521 1 2334555566777766555542 22 33 477788999889999999999999985
Q ss_pred C--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 76 D--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 76 ~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
. +.....+.....|++++|..+-+. .| ++.....++.++.+.|++++|..+|.++
T Consensus 384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 3 112122321146888888776542 33 3555567788777888888887777665
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.13 E-value=0.0031 Score=43.65 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
....|..+...|++++|+..|.++ +++.- .++.....+|..+...|++++|+..|.++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAV------CQKEP----------------EREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777888888888888888776 43322 13445567788888888888887776543
Q ss_pred CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
=. +. +..+..+..+|..+...|++++|
T Consensus 78 l~----------------------l~-P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 78 RM----------------------LD-PKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HH----------------------HC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------------------hC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 11 22 34677888999999888888887
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.11 E-value=0.0068 Score=40.20 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.-+..|.+.|+++.|++.|.++ .++ ..+++..+..+|..+...|++++|+++|.++ +++.- ..++
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~l~~-~~~~ 76 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEEL------VET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG------IEVAR-EEGT 76 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------Hhhhh-cCCc
Confidence 3456777788888888877544 222 2346788999999999999999999999997 77766 4445
Q ss_pred HHH
Q psy12373 91 IRH 93 (198)
Q Consensus 91 ~~~ 93 (198)
...
T Consensus 77 ~~~ 79 (100)
T 3ma5_A 77 QKD 79 (100)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.07 E-value=0.0011 Score=49.53 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=47.7
Q ss_pred HHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC
Q psy12373 28 CYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK 102 (198)
Q Consensus 28 ~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~ 102 (198)
+....++|+++...... ......+...|..+...|+|++|+++|.++ +++.- ...++... .+-....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~~-~~~~~~~ 84 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA------LDFFI-HTEEWDDQ-ILLDKKK 84 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTT-TCTTCCCH-HHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHh-cccccchh-hHHHHHH
Confidence 33445555555444432 123456678899999999999999999988 55443 21111000 0000000
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 103 --CTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 103 --~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.......+|..+...|++++|+..|.++
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 0122335666666777777776666544
No 177
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.07 E-value=0.049 Score=46.81 Aligned_cols=134 Identities=10% Similarity=-0.037 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHH-------cCCHH-------HHHHHHHHhcC---------HHHHHHHHhhccCCHHHHHHHHHh--
Q psy12373 46 KSATTFIQYAKAKEA-------MGSYR-------ESVGAYERAED---------YDNVVRVDLDHLNDIRHAVDIVKA-- 100 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~-------~g~~~-------~A~~~Y~ka~~---------~~~av~l~~~~~~~~~~a~~l~~~-- 100 (198)
.++.+...+|.++.. .|+++ +|++.|.++=. |...+.++. ..|++++|..+-++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Confidence 377888899999886 79987 89999999853 133445555 67999998877653
Q ss_pred -c-C-CH-HHHHHHHHHHHhcCCHHHHHHHHHHcCCh-----HHHH---HH-HHHcchhhHHhhhhh--hc-CCCCHHHH
Q psy12373 101 -K-K-CT-EGAKRIADYCNKHGDFGAAIHFLILSKCY-----QDAF---NL-SQQHKKLHEFGKFLL--EE-DEPNPVEL 164 (198)
Q Consensus 101 -~-~-~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~-----~~A~---~l-a~~~~~~~~~~~~~~--l~-~~~~~~~~ 164 (198)
. | ++ .....++.++.+.|++++|+..|.+|-.. .--+ .+ ....|..+....+.. +. .+.++...
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 2 2 23 24456788888899999999999887431 1111 11 112344332222221 22 24568899
Q ss_pred HHHHHHHHhCCChhhH
Q psy12373 165 KRLAIHFEEDKGVLTS 180 (198)
Q Consensus 165 ~~~A~~~e~~g~~~~A 180 (198)
..++.++...|++.+|
T Consensus 429 ~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHhCCCHhhH
Confidence 9999999899998888
No 178
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.05 E-value=0.0035 Score=42.52 Aligned_cols=89 Identities=16% Similarity=0.030 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+..+|..+...|++++|+++|.++ +++.- .+......+|..+...|++++|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~ 72 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEA------IKRNP----------------KDAKLYSNRAACYTKLLEFQLALKD 72 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHH------HTTCT----------------TCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CcHHHHHHHHHHHHHhccHHHHHHH
Confidence 4567778899999999999999999887 22111 1223344556666666666666655
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. + .+..+..+..+|..+...|++++|
T Consensus 73 ~~~a~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A 103 (133)
T 2lni_A 73 CEECIQ----------------------L-EPTFIKGYTRKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH----------------------h-CCCchHHHHHHHHHHHHHhhHHHH
Confidence 433211 1 123456666666666666666666
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.05 E-value=0.0027 Score=52.01 Aligned_cols=124 Identities=15% Similarity=0.044 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI--RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 124 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~--~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av 124 (198)
....+..+|..+...|++++|+.+|.++ +++.- ....+ +.+..+-. ........+|..+...|++++|+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~A------l~~~p-~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKI------VSWLE-YESSFSNEEAQKAQA--LRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHTT-TCCCCCSHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHhh-ccccCChHHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567778899999999999999999988 66655 22111 11111100 01233446788888888888888
Q ss_pred HHHHHcCC----hHHH-HHHH---HHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 125 HFLILSKC----YQDA-FNLS---QQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 125 ~~y~~ag~----~~~A-~~la---~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
..|.++=. ...| +.++ ...+.++. +..++.+ .+..+..+..++..+...|++.+|
T Consensus 217 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88776522 1111 1111 12222221 1222122 234567777788877777777666
No 180
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.05 E-value=0.0094 Score=49.97 Aligned_cols=123 Identities=9% Similarity=-0.009 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHc-----CCH---HHHHHHHHHccC-HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 7 TLDRGKWTLYESA-----GNY---EKAATCYIQLKN-WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 7 ~~~~~Aa~~y~~~-----g~~---~~Ai~~y~~~~~-~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
+++++|.++|.++ +++ ..-..++...|. ++.+...+.+ ..+..++..+|..+...|++++|+.+|.
T Consensus 111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ 190 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 190 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6688888888765 111 223345666775 8777666653 3377899999999999999999999999
Q ss_pred HhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHh-cCCHHHHH-----HHHHHc
Q psy12373 73 RAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNK-HGDFGAAI-----HFLILS 130 (198)
Q Consensus 73 ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~-~g~~~~Av-----~~y~~a 130 (198)
++=.. ...-.++. .+|++++|+...++ .| +......++..+.. .|.+++|+ ++|.++
T Consensus 191 kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A 266 (382)
T 2h6f_A 191 DILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred HHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 98422 22333444 67899988876653 23 34555677888888 55546763 555544
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0097 Score=37.69 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y 127 (198)
...+..+|..+...|++++|+.+|.++ +++.- .++.....+|..+...|++++|+..|
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP----------------NNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH------HhcCC----------------CCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456778899999999999999999887 44321 12344556788888888888887776
Q ss_pred HHc
Q psy12373 128 ILS 130 (198)
Q Consensus 128 ~~a 130 (198)
.++
T Consensus 67 ~~a 69 (91)
T 1na3_A 67 QKA 69 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 182
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.95 E-value=0.025 Score=49.12 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373 122 AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED 174 (198)
Q Consensus 122 ~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~ 174 (198)
..|..|.++|++++|+++..+- .+ .+...++.++..+-.+|...
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~M------r~---~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRL------RD---LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HH---HTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhhCCCHHHHHHHHHHH------HH---hCCCcCHHHHHHHHHHHhcC
Confidence 4455566666666666665322 11 24455677777777777653
No 183
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0068 Score=51.87 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCHHHHHHHHHHcCChHHHH
Q psy12373 59 EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG-AKRIADYCNKHGDFGAAIHFLILSKCYQDAF 137 (198)
Q Consensus 59 e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~-~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~ 137 (198)
...|+|++|+.+|.++ +.+....+|. .|++... ...+|..|...|++++|+.+|.++ +
T Consensus 309 ~~~g~~~eA~~~~~~~------L~i~~~~lg~---------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L 367 (433)
T 3qww_A 309 KHYKSPSELLEICELS------QEKMSSVFED---------SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------I 367 (433)
T ss_dssp TTTSCHHHHHHHHHHH------HHHHTTTBCT---------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred hhccCHHHHHHHHHHH------HHHhhCccCh---------hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH------H
Confidence 4567788888888777 6666544444 2233222 235788888888888888888765 3
Q ss_pred HHHHHcchhhHHhhhhhhcCC--CCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhh
Q psy12373 138 NLSQQHKKLHEFGKFLLEEDE--PNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCS 193 (198)
Q Consensus 138 ~la~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~ 193 (198)
.+. ..+ ++++ .+...+.++|..|..+|+|++|.. -+.+|+++.
T Consensus 368 ~i~---------~~~--lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~--~~~~Al~i~ 412 (433)
T 3qww_A 368 KPY---------SKH--YPVYSLNVASMWLKLGRLYMGLENKAAGEK--ALKKAIAIM 412 (433)
T ss_dssp HHH---------HHH--SCSSCHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHH
T ss_pred HHH---------HHH--cCCCChHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHH
Confidence 333 222 4432 235578899999999999999921 244555544
No 184
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.89 E-value=0.025 Score=49.13 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHHHhhccCCHHHHHHHHHh------cCCHHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRVDLDHLNDIRHAVDIVKA------KKCTEGAKRIA 111 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l~~~~~~~~~~a~~l~~~------~~~~~~~~~~A 111 (198)
+...+..+-+.+...|++++|.++|.... .|..+|..|+ ..|++++|.++..+ .|+......+-
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC-RKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 56667777888999999999999998654 2578899999 88999999988753 23444455677
Q ss_pred HHHHhcCCHHHHHHHHHHcCC
Q psy12373 112 DYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 112 ~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+.|.+.|++++|.++|.+...
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHH
Confidence 889999999999999987643
No 185
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.88 E-value=0.022 Score=46.61 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh-------cCH---HHHHHHHhhccCCHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA-------EDY---DNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka-------~~~---~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
+......+|..+...|++++|++.+.++ +.. ..+|++++ ..|+.+.|.++.++
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDN 161 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 4555678899999999999999999998 433 46688888 88999999888853
No 186
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=96.84 E-value=0.06 Score=48.49 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------H-HHHHHhhccCCHHHHHH-----------HHHhc-C----
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYD---------N-VVRVDLDHLNDIRHAVD-----------IVKAK-K---- 102 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------~-av~l~~~~~~~~~~a~~-----------l~~~~-~---- 102 (198)
.++..+.+.| ..++..+|+++|.-..... . .-++.+ ..+.++..+- +..+. +
T Consensus 358 rLI~~Yt~~F-~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvl-etr~f~~LLG~i~~dG~r~~G~i~~~~~li~l 435 (661)
T 2qx5_A 358 NILANYTKSF-RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVL-ETKEFTVLLGKIGRDGARIPGVIEERQPLLHV 435 (661)
T ss_dssp HHHHHHHTTT-TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHH-HHCCHHHHHCEECTTSCEECCHHHHTCGGGTC
T ss_pred HHHHHHHHHh-hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-hcccHHHHcCCcCCCCCcCcchHHHhhccccc
Confidence 3455556666 4559999999998765431 1 223333 3356665431 11211 1
Q ss_pred -CH-----HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhh---hcC----------CCCHHH
Q psy12373 103 -CT-----EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL---EED----------EPNPVE 163 (198)
Q Consensus 103 -~~-----~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~---l~~----------~~~~~~ 163 (198)
++ .....+|..++..|.++.||.+|..||+|+.++++.... +.+++. ++. ......
T Consensus 436 ~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~-----Ls~~l~~~~~~~~~~~~~~~~~~~l~~l 510 (661)
T 2qx5_A 436 RDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSL-----LSDTLSASDLDQPLVGPDDNSETNPVLL 510 (661)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTSCSSCSSCCTTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHhcccccccccccccccccccHHHH
Confidence 21 123467889999999999999999999999999998544 233321 111 122345
Q ss_pred HHHHHHHHHhCCCh--------hhH-------------HhcCChhhHHhhhhh
Q psy12373 164 LKRLAIHFEEDKGV--------LTS-------------FRVSQQSRAMPCSSG 195 (198)
Q Consensus 164 ~~~~A~~~e~~g~~--------~~A-------------~~ag~~~~Al~l~~~ 195 (198)
...+.+.|..++.+ ..+ ..+|+|..|++...+
T Consensus 511 a~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 511 ARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55566666554321 111 778999999987654
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.79 E-value=0.015 Score=39.06 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
.++.++..+|..+...|++++|+.+|.++ +++.- ..+.....+|..+...|++++|+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAA------LDFDP----------------TYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 47788999999999999999999999887 54322 123445678999999999999999
Q ss_pred HHHHc
Q psy12373 126 FLILS 130 (198)
Q Consensus 126 ~y~~a 130 (198)
.|.++
T Consensus 75 ~~~~a 79 (115)
T 2kat_A 75 AWESG 79 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 188
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0072 Score=41.80 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
+...+...|..+...|++++|+++|.++ +++.- +... .......+|..+...|++++|+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~----~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~ 87 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQA------LGLDA----TPQD---------QAVLHRNRAACHLKLEDYDKAETE 87 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHH------HTSCC----CHHH---------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHcc----cchH---------HHHHHHHHHHHHHHHccHHHHHHH
Confidence 5677888999999999999999999987 32211 1000 022234566666677777766666
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
|.++-. + .+..+..+..+|..+...|++++|
T Consensus 88 ~~~~~~----------------------~-~~~~~~~~~~~a~~~~~~~~~~~A 118 (148)
T 2dba_A 88 ASKAIE----------------------K-DGGDVKALYRRSQALEKLGRLDQA 118 (148)
T ss_dssp HHHHHH----------------------H-TSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHh----------------------h-CccCHHHHHHHHHHHHHcCCHHHH
Confidence 544311 1 123467777788888778887777
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.72 E-value=0.019 Score=40.62 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
+|+++|++.|.++ .+ ..++... +|..+...+.++.|+++|.++ + ..
T Consensus 9 ~d~~~A~~~~~~a------a~----~g~~~a~--lg~~y~~g~~~~~A~~~~~~A------a-----~~----------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKA------CE----LNEMFGC--LSLVSNSQINKQKLFQYLSKA------C-----EL----------- 54 (138)
T ss_dssp HHHHHHHHHHHHH------HH----TTCTTHH--HHHHTCTTSCHHHHHHHHHHH------H-----HT-----------
T ss_pred cCHHHHHHHHHHH------Hc----CCCHhhh--HHHHHHcCCCHHHHHHHHHHH------H-----cC-----------
Confidence 4567777777554 21 1233333 888888888888888888877 2 21
Q ss_pred hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHh--
Q psy12373 100 AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE-- 173 (198)
Q Consensus 100 ~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-- 173 (198)
.++.....++..|.. .+|+++|+++|.+|-. ...+..+..++..|..
T Consensus 55 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------------------------~g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 55 --NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-------------------------LNDQDGCLILGYKQYAGK 107 (138)
T ss_dssp --TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHTS
T ss_pred --CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-------------------------CCCHHHHHHHHHHHHCCC
Confidence 345566778888887 7889999998887721 1356777778887777
Q ss_pred --CCChhhH
Q psy12373 174 --DKGVLTS 180 (198)
Q Consensus 174 --~g~~~~A 180 (198)
.+++.+|
T Consensus 108 g~~~d~~~A 116 (138)
T 1klx_A 108 GVVKNEKQA 116 (138)
T ss_dssp SSCCCHHHH
T ss_pred CCCcCHHHH
Confidence 7777777
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.70 E-value=0.011 Score=50.49 Aligned_cols=74 Identities=12% Similarity=-0.029 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC-HHH-HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND-IRH-AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~-~~~-a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
...+...|..+...|+|++|+.+|.++ +++.- .... +++ ...+ ..........+|..+.+.|++++|+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~A------l~~~p-~~~~~~~~~~~~~--~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKI------VSWLE-MEYGLSEKESKAS--ESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHT-TCCSCCHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH------HHHhc-ccccCChHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 456778899999999999999999988 77665 2211 111 1100 00011233457777888888888887
Q ss_pred HHHHc
Q psy12373 126 FLILS 130 (198)
Q Consensus 126 ~y~~a 130 (198)
.|.++
T Consensus 339 ~~~~a 343 (457)
T 1kt0_A 339 CCDKA 343 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.68 E-value=0.078 Score=44.97 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHHHhcCH--------HHHHHHHhhcc----CCHHHHHHHHHhc--CCHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMG---SYRESVGAYERAEDY--------DNVVRVDLDHL----NDIRHAVDIVKAK--KCTEGAKR 109 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka~~~--------~~av~l~~~~~----~~~~~a~~l~~~~--~~~~~~~~ 109 (198)
++..+..+|..+...| ++++|+++|.++-+. ...-.++. .. +++++|+..-++. .++.....
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa~g~~~a~~~ 253 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIAPGYPASWVS 253 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHGGGSTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 5668889999999999 999999999987321 12233443 33 6888887765543 34556778
Q ss_pred HHHH-H--HhcCCHHHHHHHHHHcCC---hHHHHHHHH--Hcc-----hhhHHhhhhh-hcCCCCHHHHHHHHHHHHh--
Q psy12373 110 IADY-C--NKHGDFGAAIHFLILSKC---YQDAFNLSQ--QHK-----KLHEFGKFLL-EEDEPNPVELKRLAIHFEE-- 173 (198)
Q Consensus 110 ~A~~-~--~~~g~~~~Av~~y~~ag~---~~~A~~la~--~~~-----~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~-- 173 (198)
++.. + ...+++++|+++|.++-. ..--+.|+. ..| .++....... .. ...+..+..++..|..
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence 8886 5 568999999999998643 222233332 122 2222222211 12 6789999999998876
Q ss_pred --CCChhhH
Q psy12373 174 --DKGVLTS 180 (198)
Q Consensus 174 --~g~~~~A 180 (198)
..++.+|
T Consensus 333 g~~~d~~~A 341 (452)
T 3e4b_A 333 LGKVYPQKA 341 (452)
T ss_dssp TSSCCHHHH
T ss_pred CCCcCHHHH
Confidence 4477777
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.63 E-value=0.064 Score=39.52 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH-AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~-a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
...+...|..+...|+|++|++.|.++ +++.- . .++. +..+.. .+.......|..+.+.|++++|+..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kA------L~l~p-~--~~~~~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~ 79 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRA------MEISH-T--MPPEEAFDHAG--FDAFCHAGLAEALAGLRSFDEALHS 79 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHT-T--SCTTSCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH------HhhCC-C--Ccchhhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456678899999999999999999998 77765 2 1110 000000 0011334577888899999999988
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHH----HHHHHHHHhCCChhhH
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL----KRLAIHFEEDKGVLTS 180 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~e~~g~~~~A 180 (198)
|.+| +++ |...+.+.+ ..+..+ ...+..+...|++++|
T Consensus 80 ~~kA------L~l---------~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEA 121 (159)
T 2hr2_A 80 ADKA------LHY---------FNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEA 121 (159)
T ss_dssp HHHH------HHH---------HHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH------HHh---------hhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHH
Confidence 7644 444 222211233 456777 8999999999999998
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.59 E-value=0.0041 Score=42.30 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHcCC-----HH------HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGN-----YE------KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVG 69 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~-----~~------~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~ 69 (198)
.|++++|..+|.++=. ++ ....+|...|+++.|...+.+ .+++.++..+|..+...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666665522 22 233456667777777666543 3478899999999999999999999
Q ss_pred HHHHh
Q psy12373 70 AYERA 74 (198)
Q Consensus 70 ~Y~ka 74 (198)
+|.++
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0067 Score=49.69 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcC-------------------------HHHHHHHHhhccCCHHHHHHHHHh----
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAED-------------------------YDNVVRVDLDHLNDIRHAVDIVKA---- 100 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------------------------~~~av~l~~~~~~~~~~a~~l~~~---- 100 (198)
.+...|..+...|+|++|+.+|.++-. +...-.++. .+|+|++|...+.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 344556666666666666666665432 122233344 56666666655543
Q ss_pred cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373 101 KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY 133 (198)
Q Consensus 101 ~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~ 133 (198)
.| +......+|..+...|++++|+..|.++-..
T Consensus 260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12 3555667888888888888888888887553
No 195
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.017 Score=38.85 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF 126 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~ 126 (198)
++.-+..+|+++...|+|..|+..|..| ++..- .-..+ ..+.++....+|..+.+.|+++.|+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~A------l~~~~-~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQA------LRQLD-EGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-TTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHH------HHhhh-ccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3556789999999999999999999988 66654 21110 112234456789989999999999988
Q ss_pred HHHcC
Q psy12373 127 LILSK 131 (198)
Q Consensus 127 y~~ag 131 (198)
|.++-
T Consensus 69 ~~~al 73 (104)
T 2v5f_A 69 TKKLL 73 (104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.54 E-value=0.03 Score=46.51 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHH-------hhh-hccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIG-------QLL-PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--- 77 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~-------~l~-~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--- 77 (198)
+..-+..|.+.|+++.|++.|.++-....-. ... .......++..+|..+...|++++|+++|.++-..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3445667778899999999987664322110 000 01124577888999999999999999999988532
Q ss_pred -----HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHH
Q psy12373 78 -----DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAA 123 (198)
Q Consensus 78 -----~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~A 123 (198)
...-.++. .+|++++|....++ .| ++.....++..+...++.+++
T Consensus 306 ~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 NTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334555 78999998776543 22 344444566666655555544
No 197
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=96.49 E-value=0.06 Score=45.57 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHH-HHHHHhcCC--HHHHHHHHHHcCChHHHHH
Q psy12373 63 SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRI-ADYCNKHGD--FGAAIHFLILSKCYQDAFN 138 (198)
Q Consensus 63 ~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~-A~~~~~~g~--~~~Av~~y~~ag~~~~A~~ 138 (198)
..+.-|.-..-.|+++.||++|+ ..++|-+|+=|+... .++.. ..+ -.|+.+... .-..+-..+-.++|.+.+.
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl-~~~r~adAllLA~~g-g~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~ 222 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSL-ENDLMMEAMVIALDS-NNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVE 222 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-TTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHH-HCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHh
Confidence 34666777777899999999999 889999999998654 44444 444 346665543 4445557778888887665
Q ss_pred HHHHcchhhHH-hhhhhhcC-C--CCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhh
Q psy12373 139 LSQQHKKLHEF-GKFLLEED-E--PNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSS 194 (198)
Q Consensus 139 la~~~~~~~~~-~~~~~l~~-~--~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~ 194 (198)
-+ .-+.+... .-+++=++ + .-+.+...++.-++..|+...| +-||++++.+.+-.
T Consensus 223 ~~-~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~ 285 (399)
T 2pm7_A 223 NL-DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWL 285 (399)
T ss_dssp HB-CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHH
Confidence 43 22233222 22211122 3 3477778999999999999888 99999999888753
No 198
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.38 E-value=0.0075 Score=51.93 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE 72 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ 72 (198)
.++|++|.++|.++=. +.....+|.+.+++++|...+.+ .++...+..+|..+...|++++|+++|.
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4789999999987621 23456678888999988776653 2377889999999999999999999999
Q ss_pred HhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCHHHHHHHHHHc
Q psy12373 73 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY--CNKHGDFGAAIHFLILS 130 (198)
Q Consensus 73 ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~--~~~~g~~~~Av~~y~~a 130 (198)
++ +++.- . + +.....++.. +...|++++|+++|.+.
T Consensus 99 ~a------l~~~p-~--~-------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 99 TV------VKVKP-H--D-------------KDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HH------HHHST-T--C-------------TTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HH------HHhCC-C--C-------------HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 87 55432 1 1 1122233333 66678888888887743
No 199
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.16 E-value=8.5e-07 Score=76.89 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=102.9
Q ss_pred HHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---HHHHHHHHhhc
Q psy12373 12 KWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED---YDNVVRVDLDH 87 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~~~av~l~~~~ 87 (198)
|-..|.+-+....|+...+ ..++.+++.+.+.+++.+.+..++|+..-+.|...+||+.|+||+| +...|+.+- +
T Consensus 17 AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~-~ 95 (624)
T 3lvg_A 17 RGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAAN-T 95 (624)
T ss_dssp ----------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTT-T
T ss_pred HHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHH-h
Confidence 4455666666666666555 4566778888888888999999999999999999999999999998 478999998 8
Q ss_pred cCCHHHHHHHHHhcC----C----HHH------------------------HHHHHHHHHhcCCHHHHHHHHHHcCChHH
Q psy12373 88 LNDIRHAVDIVKAKK----C----TEG------------------------AKRIADYCNKHGDFGAAIHFLILSKCYQD 135 (198)
Q Consensus 88 ~~~~~~a~~l~~~~~----~----~~~------------------------~~~~A~~~~~~g~~~~Av~~y~~ag~~~~ 135 (198)
.|.|++.++.....+ + ++. ...+|.-|-..|.|+.|.-+|..-.+|.+
T Consensus 96 ~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak 175 (624)
T 3lvg_A 96 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR 175 (624)
T ss_dssp SSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred CCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence 899999987765322 1 111 23345556666777777777766666532
Q ss_pred HHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 136 AFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 136 A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
=..-...-+.+....+. -.+..++.+-..+-..+.+.+.|.-|
T Consensus 176 LAstLV~L~~yq~AVda--ArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDG--ARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp TSSSSSSCSGGGSSTTT--TTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCChhHHHHHHHHHhCchHHHHH
Confidence 11111111222111221 12345556666666666666666666
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.07 E-value=0.034 Score=37.21 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
-+..|...|+++.|+..|.++ .++ .......+..+|..+...|++++|+.+|.++ +++.-
T Consensus 25 lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~ 84 (115)
T 2kat_A 25 LGKTYAEHEQFDAALPHLRAA------LDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG------LAAAQ 84 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH------HHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhcc
Confidence 345556666666666665433 211 2236778889999999999999999999987 66655
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.05 E-value=0.027 Score=36.52 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=41.6
Q ss_pred HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT-TFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~-l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+..|.+.|+++.|+++|.++ ..+ ...++. ++..+|..+...|++++|+++|.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEF------LQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHH------HHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH------HHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566678888888888554 221 234667 8899999999999999999999988
No 202
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.04 E-value=0.11 Score=42.41 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHc-------CCHH---HHHHHHHHccCHHHHHhhhhc---cCC------hHHHHHHHHH----HHHcCC
Q psy12373 7 TLDRGKWTLYESA-------GNYE---KAATCYIQLKNWTKIGQLLPH---IKS------ATTFIQYAKA----KEAMGS 63 (198)
Q Consensus 7 ~~~~~Aa~~y~~~-------g~~~---~Ai~~y~~~~~~~~a~~l~~~---~~~------~~l~~~~A~~----~e~~g~ 63 (198)
|++++|.+++.+. +..+ .++.+|.+.|+.+.|..++.+ .++ ..++..++.. ....+.
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 4555555555554 2221 344555555555555555532 222 2444444422 222235
Q ss_pred HHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHH
Q psy12373 64 YRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIV 98 (198)
Q Consensus 64 ~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~ 98 (198)
+.+|...|...-+ ....+.++. ++|+|++|.++.
T Consensus 194 ~q~A~~~f~El~~~~p~~~~~~lLln~~~-~~g~~~eAe~~L 234 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPTWKTQLGLLNLHL-QQRNIAEAQGIV 234 (310)
T ss_dssp TTHHHHHHHHHHTTSCSHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHH-HcCCHHHHHHHH
Confidence 6666655555432 112233444 556666655554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.021 Score=37.49 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-+..|...|++++|++.|.++ .++ ...++.++..+|..+...|++++|+++|.++
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQL------ITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------Hhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4456677778888888887554 222 2346788999999999999999999999987
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.93 E-value=0.018 Score=42.49 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=41.2
Q ss_pred ccCChHHHHHHHHHHHHcCCHH----------HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 44 HIKSATTFIQYAKAKEAMGSYR----------ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY 113 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g~~~----------~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~ 113 (198)
...++..+..||..+...+.++ +|+..|.++ |++-= ...+....++..
T Consensus 32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A------L~ldP----------------~~~~A~~~LG~a 89 (158)
T 1zu2_A 32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA------LLIDP----------------KKDEAVWCIGNA 89 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH------HHhCc----------------CcHHHHHHHHHH
Confidence 3447888999999888887764 555555555 33221 123344456666
Q ss_pred HHhc-----------CCHHHHHHHHHHcC
Q psy12373 114 CNKH-----------GDFGAAIHFLILSK 131 (198)
Q Consensus 114 ~~~~-----------g~~~~Av~~y~~ag 131 (198)
|.+. |++++|+++|.+|=
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 6554 47888888777653
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.90 E-value=0.029 Score=35.32 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-+..|...|++++|+..|.++- ++ ...++..+..+|..+...|++++|+++|.++
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~------~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH------hc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566777788888888775542 22 2246788889999999999999999999887
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.49 E-value=0.031 Score=47.66 Aligned_cols=79 Identities=8% Similarity=-0.074 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHcC----------------CHHHHHHHHHHccCHHHHHhhhhc-------------cCChHHHHHHHH
Q psy12373 6 LTLDRGKWTLYESAG----------------NYEKAATCYIQLKNWTKIGQLLPH-------------IKSATTFIQYAK 56 (198)
Q Consensus 6 ~~~~~~Aa~~y~~~g----------------~~~~Ai~~y~~~~~~~~a~~l~~~-------------~~~~~l~~~~A~ 56 (198)
.++|++|..+|+++= -+..+...|...|+|++|..+..+ .+....+..+|.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 356777777776551 134455666667777776555541 113446668999
Q ss_pred HHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373 57 AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND 90 (198)
Q Consensus 57 ~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~ 90 (198)
.+-..|++++|+.+|.+| +++....+|.
T Consensus 380 ~~~~~g~~~eA~~~~~~A------l~i~~~~lG~ 407 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLA------FDIMRVTHGR 407 (429)
T ss_dssp HHHHTTCHHHHHHHHHHH------HHHHHHHTCT
T ss_pred HHHhcCCHHHHHHHHHHH------HHHHHHhcCC
Confidence 999999999999999999 7777755565
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.45 E-value=0.071 Score=34.38 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTE-GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~-~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
..|..+...|++++|++.|.++ +++.- .++. ....+|..+...|++++|++.|.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEF------LQTEP----------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH------HHHCS----------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666677777777776665 33211 1234 4557888888889999988888665
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.63 E-value=0.16 Score=33.88 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=46.4
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-----ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-----HIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-----~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+....|+- +..+-+.|+++.|+.-|..+ .+... ..+.+.++..+|..+...|+++.|+.+|.++
T Consensus 4 sa~dc~~l-G~~~~~~~~y~~A~~W~~~A------l~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFEL-GKVAYTEADYYHTELWMEQA------LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHH-HHHHHHTTCHHHHHHHHHHH------HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHccchHHHHHHHHHH------HHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33344443 45555669999999887655 23322 2345788899999999999999999999998
No 209
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=94.51 E-value=1.2 Score=38.10 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHH-----------HHHHHHHHhcCHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYR-----------ESVGAYERAEDYDN 79 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~-----------~A~~~Y~ka~~~~~ 79 (198)
+-..-+...|+.++|+++-.+.+.|..|.-|+... +++++.+..+.|-+...-. -..=+=.-+|++..
T Consensus 155 ~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~-g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~ 233 (441)
T 3mzk_B 155 MRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLM-GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKM 233 (441)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhc-CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHH
Confidence 34455677899999999999999999998888655 4666666665555532111 11222344688888
Q ss_pred HHHHHh-------hccCCHHHHHHHHHhcCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 80 VVRVDL-------DHLNDIRHAVDIVKAKKC-------------TEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 80 av~l~~-------~~~~~~~~a~~l~~~~~~-------------~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+|.-+. ..+.+|.+.+.++-...+ .+....++..+...|..+.|.-.|.-||.
T Consensus 234 ~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a~~ 306 (441)
T 3mzk_B 234 AIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIGNV 306 (441)
T ss_dssp HHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhccCC
Confidence 887652 024589997776543321 23566899999999999999999999987
No 210
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.09 E-value=0.11 Score=42.38 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHh----------hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-----
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQ----------LLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE----- 75 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~----------l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----- 75 (198)
.-+..|.+.|+++.|+.+|.++-....-.. ....+ ...++..+|..+...|+|++|+++|.++-
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV-KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH-HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344555667899999988876532211000 00000 11477889999999999999999999873
Q ss_pred C---HHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373 76 D---YDNVVRVDLDHLNDIRHAVDIVKAK 101 (198)
Q Consensus 76 ~---~~~av~l~~~~~~~~~~a~~l~~~~ 101 (198)
+ +...-.++. .+|++++|....++.
T Consensus 263 ~~~a~~~lg~a~~-~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 263 NPKALFRRGKAKA-ELGQMDSARDDFRKA 290 (338)
T ss_dssp CHHHHHHHHHHHH-TTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 2 233344556 789999998887653
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.55 E-value=0.059 Score=47.10 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=88.3
Q ss_pred HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCH---HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373 27 TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSY---RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC 103 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~---~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~ 103 (198)
++|+.-.+++.+...++.-++-+ ...+|+.+|+.... +-|..+|.+.+.|..+|.++. +-+.|.+|+..|..+++
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD-~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K-kDklykDAietAa~S~~ 495 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFD-NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKD 495 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSC-TTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS-TTCCTTGGGTTTTTCCC
T ss_pred HHHhhhhhHHHHHHHHHHhcccc-HHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHcCC
Confidence 45555555555544444333111 12467777776654 468999999999999999999 88999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcC---ChHHHHHHHHHcchhh
Q psy12373 104 TEGAKRIADYCNKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLH 147 (198)
Q Consensus 104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag---~~~~A~~la~~~~~~~ 147 (198)
++....+=+||...|..+-=+-..-.+- +++-+++++-.|+..|
T Consensus 496 ~elaeeLL~yFv~~g~~EcF~a~LytCYdLlrpDvVlElaW~~~l~D 542 (624)
T 3lvg_A 496 TELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMD 542 (624)
T ss_dssp TTHHHHHHHHHHHHCSTHHHHHHHHHTSSSSSCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHhhccChHHHHHHHHHhcccc
Confidence 9999999999999988775444444444 3788899999998765
No 212
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=93.46 E-value=0.71 Score=41.54 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD 86 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~ 86 (198)
.+....|..++..|.+++|+.+|..+|+++.+|++...
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~ 481 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNS 481 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45556799999999999999999999999999999983
No 213
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.34 E-value=1 Score=33.29 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.++..+|..+-..|+|..|...|.++ +....
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qA------Lq~~k 94 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMA------LQQKK 94 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH------HHHHH
Confidence 37788999999999999999999997 66665
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.79 E-value=0.21 Score=36.67 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHcC-----------CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHh
Q psy12373 46 KSATTFIQYAKAKEAMG-----------SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g-----------~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~ 100 (198)
.....+..+|..+.+.| ++++|+++|.+| |++-- ....+.++.+++.+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA------l~l~P-~~~~y~~al~~~~k 136 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA------VDEQP-DNTHYLKSLEMTAK 136 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------HHHCT-TCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH------HHhCC-CCHHHHHHHHHHHh
Confidence 36778889999988774 899999999988 66655 33444555555544
No 215
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.71 E-value=2.8 Score=34.09 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 157 DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++|+++..+|..|-+.|++.+|
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHH
Confidence 457899999999999999999999
No 216
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.13 E-value=2.2 Score=39.94 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc------CC-HHHHH---HHHHHHHhcCC-----HHHHHHHHHH
Q psy12373 65 RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK------KC-TEGAK---RIADYCNKHGD-----FGAAIHFLIL 129 (198)
Q Consensus 65 ~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~------~~-~~~~~---~~A~~~~~~g~-----~~~Av~~y~~ 129 (198)
+.=+....+.|.+..||.+++ ...++|...+++.+. .+ ...+. .++.++....+ +.-++++|.+
T Consensus 149 ~~iv~~cl~hnae~~AvdLal-E~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k 227 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIAL-EGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN 227 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH-HHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence 444567778899999999999 679999988888762 11 12221 13333322222 3568999999
Q ss_pred cC--ChHHHHHHHHHcchhhHHhhhh-hhcCCCCHHHHHHHHHHHHh
Q psy12373 130 SK--CYQDAFNLSQQHKKLHEFGKFL-LEEDEPNPVELKRLAIHFEE 173 (198)
Q Consensus 130 ag--~~~~A~~la~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~e~ 173 (198)
-. +|.++++++.+-+..+.+.+++ .+-...++.+..++|=-+.+
T Consensus 228 ~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~ 274 (963)
T 4ady_A 228 MPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVS 274 (963)
T ss_dssp SSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 88 8999999999998887777775 22224566666666654443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.70 E-value=1.7 Score=28.40 Aligned_cols=63 Identities=19% Similarity=0.048 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHH
Q psy12373 46 KSATTFIQYAKAKEAMGS---YRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGA 122 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~---~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~ 122 (198)
+++.++..+|..+...++ .++|..++.++ +.+ .-.++.....+|..+...|++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A------L~~----------------dp~~~rA~~~lg~~~~~~g~y~~ 61 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQA------LQL----------------EPYNEAALSLIANDHFISFRFQE 61 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH------HHH----------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH------HHH----------------CcCCHHHHHHHHHHHHHcCCHHH
Confidence 367778888877764444 57777777766 321 12345666778999999999999
Q ss_pred HHHHHHHc
Q psy12373 123 AIHFLILS 130 (198)
Q Consensus 123 Av~~y~~a 130 (198)
|+..|.+.
T Consensus 62 Ai~~w~~~ 69 (93)
T 3bee_A 62 AIDTWVLL 69 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 218
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.68 E-value=5.3 Score=33.50 Aligned_cols=119 Identities=11% Similarity=0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHH------HHhhhh-------ccC--------------------ChH-----HHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTK------IGQLLP-------HIK--------------------SAT-----TFI 52 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~------a~~l~~-------~~~--------------------~~~-----l~~ 52 (198)
+-+++|.+.|++++..++......|-. +..+++ .++ .+. +-.
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999988877652 233322 111 122 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------c-CCHHHHH--
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------K-KCTEGAK-- 108 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~-~~~~~~~-- 108 (198)
.+|..+...|+|.+|.+++.+.-.. .--++++. .++++.++-..... . ++|...-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 6788999999999998888776542 23345555 57888877654422 1 3444321
Q ss_pred --HHHHHHH-hcCCHHHHHHHHHHc
Q psy12373 109 --RIADYCN-KHGDFGAAIHFLILS 130 (198)
Q Consensus 109 --~~A~~~~-~~g~~~~Av~~y~~a 130 (198)
.-|.++. ..++|.+|-..|..+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2466778 899999998888776
No 219
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.31 E-value=5.1 Score=32.55 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=67.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHH-------HHHHhcCH------H
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG-------AYERAEDY------D 78 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~-------~Y~ka~~~------~ 78 (198)
.+++|+....+...+.=|.+.++|+.|.. ++..-|..+-+.|++..|.+ .|.+++.. .
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAid---------lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVRSKSYEHAIE---------LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhcCHHHHHH---------HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 33445554444445555556666776663 44555666666777777655 37777632 4
Q ss_pred HHHHHHhhccC--------CHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 79 NVVRVDLDHLN--------DIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 79 ~av~l~~~~~~--------~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
+.+++.. ... -.++|++-..+ .++|+....+|..|-+.|++.+|..+|+.+.
T Consensus 97 rl~~l~~-~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 97 RLVRLIA-ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHHHT-TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHH-HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5555544 211 12234443332 2467778889999999999999999999444
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=91.12 E-value=6.1 Score=35.50 Aligned_cols=56 Identities=11% Similarity=-0.058 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 11 GKWTLYESAGNYEKAA-TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai-~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++++.+..|+.+.|+ .+|.++ ...+. .+..+...++...+..|+++.|.+.|.++
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rA------i~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLG------QQCIP--NSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH------HHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555566655555 554322 22221 25567778899999999999999998887
No 221
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=89.97 E-value=0.0073 Score=42.38 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=60.1
Q ss_pred HHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC---ChHHHHHHHHHcchhh
Q psy12373 71 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLH 147 (198)
Q Consensus 71 Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag---~~~~A~~la~~~~~~~ 147 (198)
|.+.+.|..+|.++. .-+.|.+|+..|..+.+++.+..+=+||...|..+-=+-.+-.+- +++-+++++-.++..|
T Consensus 16 ykkN~rw~qSI~L~K-kDkLykDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLlrpDvVLElaWr~~l~D 94 (125)
T 3qil_A 16 PRGSHMWKQSVELAK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLELAWRHNIMD 94 (125)
T ss_dssp SSSCCCCSSCCCCCS-CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCSCTTHHHHTTSSSSCCC
T ss_pred hhccccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhccChHHHHHHHHHhcccc
Confidence 566778889999999 889999999999999999999999999999998775444443343 3667777777776644
No 222
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.25 E-value=2 Score=36.22 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-------CCHHHH---
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-------KCTEGA--- 107 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-------~~~~~~--- 107 (198)
..+..+|+++.+.|+++.|.++|.+..++ -..||+++ ..++|..+...+.+. ++++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34456677777777777777776655533 45567777 567777766555431 222221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 108 -KRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 108 -~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
...|.++...++|..|...|..+
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 12355566788999888888753
No 223
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.06 E-value=2.6 Score=40.16 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=90.8
Q ss_pred HHHHHHcCCHHHHHHHHHHccC-----------HHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh---
Q psy12373 13 WTLYESAGNYEKAATCYIQLKN-----------WTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERA--- 74 (198)
Q Consensus 13 a~~y~~~g~~~~Ai~~y~~~~~-----------~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka--- 74 (198)
++.|..+|++++|.++|.++-. ......+... ...+..+.++...||..|.++.++++-..|
T Consensus 849 g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 849 ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678889999999999987621 1111122211 114567788999999999999999887655
Q ss_pred ---cC-------HHHHHHHHhhccCCHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 75 ---ED-------YDNVVRVDLDHLNDIRHAVDIVKAKKC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 75 ---~~-------~~~av~l~~~~~~~~~~a~~l~~~~~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
++ |.+..+.++ .++++++|.......|+ .+-..++-..+.+.|..+.-+.+ --.|..++--++.
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L-~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~l-pf~gl~~~Vd~IL 1006 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTAC-AAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNY-SMPTLRQDVDNLL 1006 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHH-HHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHH-TTTSCHHHHHHHH
T ss_pred ccCCChhhHHHHHHHHHHHHH-hhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCC-CCccHHHHHHHHH
Confidence 12 234456666 67777777655543332 12222222223334444444432 1233333322222
Q ss_pred HHcchhhHHhhhhhh-cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 141 QQHKKLHEFGKFLLE-EDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 141 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
...-. +. .....|..|..+-.|...+|+|..|
T Consensus 1007 ~~kAr--------~~~~~~~~p~Yy~iLYs~ri~r~dyR~A 1039 (1139)
T 4fhn_B 1007 ERKAF--------QMINVESQPCWYNILFSWRYKHQNYRDA 1039 (1139)
T ss_dssp HHHHH--------HHHHHCCSTHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHH--------hCCccccCCCHHHHhHhhhhccCChHHH
Confidence 11100 01 2245678888889999999999888
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.32 E-value=5.7 Score=28.74 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH---ccCHHH----HHhhhhccC---ChHHHHHHHHHHH--HcCCHHHHHHHHHHhcC
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQ---LKNWTK----IGQLLPHIK---SATTFIQYAKAKE--AMGSYRESVGAYERAED 76 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~---~~~~~~----a~~l~~~~~---~~~l~~~~A~~~e--~~g~~~~A~~~Y~ka~~ 76 (198)
.-+|-++ .-.|..++-+++..+ +.+... ...+++.++ --..+..+|+.|. .-|+...-+.+|.+.|.
T Consensus 11 LmeAK~~-ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~ 89 (172)
T 1wy6_A 11 LMDAKKF-LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT 89 (172)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc
Confidence 3344443 345777777777653 334433 234444443 2233444565543 55788999999999997
Q ss_pred H----HHHHHHHhhccCCHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 77 Y----DNVVRVDLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 77 ~----~~av~l~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
. +-|++..+ ..|.-|..-++.+. .++|.....+|..|.+.|+..+|-++..+|
T Consensus 90 ~se~vd~ALd~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 90 LNEHVNKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CCHHHHHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 5 45566666 66888888888776 234777778999999999999998887664
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=87.79 E-value=4.8 Score=36.23 Aligned_cols=133 Identities=6% Similarity=-0.084 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHH-HHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc---------------C
Q psy12373 47 SATTFIQYAKAKEAMGSYRESV-GAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK---------------K 102 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~-~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~---------------~ 102 (198)
.+.+...+|++++..|+.++|. +.|.+|-. |...+.+.. ..|++++|..+-.+. |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee-~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 7889999999999999999997 99988742 123344444 678888887665421 2
Q ss_pred C------------HHHHHHHHHHHHhcCCHHHHHHHHHHcCC---------hHHHHHHHHHcch-hhHHhhhhh--hc-C
Q psy12373 103 C------------TEGAKRIADYCNKHGDFGAAIHFLILSKC---------YQDAFNLSQQHKK-LHEFGKFLL--EE-D 157 (198)
Q Consensus 103 ~------------~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---------~~~A~~la~~~~~-~~~~~~~~~--l~-~ 157 (198)
. ...-..++++..+.|+.+.|..+|.+|-. |.+...|=...+. .+....+.. |. .
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1 11223456666778889999999988732 1222222222222 333333332 32 3
Q ss_pred CCCHHHHHHHHHHHHhCCChhhH
Q psy12373 158 EPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 158 ~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++......+.++...|+..+|
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHH
Confidence 55788888889988888888888
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.63 E-value=5.9 Score=37.15 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-c------CChHHHHH---HHHHHH-----HcCCHHHHHHHHHHh
Q psy12373 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-I------KSATTFIQ---YAKAKE-----AMGSYRESVGAYERA 74 (198)
Q Consensus 10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~------~~~~l~~~---~A~~~e-----~~g~~~~A~~~Y~ka 74 (198)
++=.....+.|.+..|+.+-+.....+.+.+.+++ + .-..++.. ++.++- +..-++.+.+.|.+-
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~ 228 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNM 228 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhC
Confidence 34445566789999999999999999988888875 1 11223322 222211 233567799999998
Q ss_pred c--CHHHHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q psy12373 75 E--DYDNVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKH 117 (198)
Q Consensus 75 ~--~~~~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~ 117 (198)
. +|..++++++ ++|+.+.+.++..+ ..+....+++|=-+.+.
T Consensus 229 ~~~dy~~a~~~ai-~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~ 275 (963)
T 4ady_A 229 PNCDYLTLNKVVV-NLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSS 275 (963)
T ss_dssp SSCCHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH-HcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcc
Confidence 8 9999999999 99999999888877 56676777776665543
No 227
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.16 E-value=5.8 Score=32.59 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 157 DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 157 ~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+.++|+++..+|..|-+.++|.+|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHH
Confidence 568899999999999999999999
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.61 E-value=3.8 Score=29.64 Aligned_cols=64 Identities=8% Similarity=0.041 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHcCChHHHHHHH----HHcchhhHHhhhh-h-hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 117 HGDFGAAIHFLILSKCYQDAFNLS----QQHKKLHEFGKFL-L-EE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~~~A~~la----~~~~~~~~~~~~~-~-l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
=|.....|..|.+.|..++=+.+| -..++.|.+.++. . +. ...+|+.+.++|..|...|+..+|
T Consensus 74 C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 74 CQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp CSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhH
Confidence 356789999999999966655555 5667777777776 3 34 355699999999999999999888
No 229
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.52 E-value=3.4 Score=39.25 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=57.3
Q ss_pred HHHHHHHHHHccCHHHHHhhhhc---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHH
Q psy12373 22 YEKAATCYIQLKNWTKIGQLLPH---------IKSATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRV 83 (198)
Q Consensus 22 ~~~Ai~~y~~~~~~~~a~~l~~~---------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l 83 (198)
+...|..|++.|++++|..++.. .++.-.+.-+=.-+.+.|.+++|.++|.... .|...|+.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 56677788888888887777632 2366677777788889999999999998775 26788888
Q ss_pred HhhccCC-HHHHHHHHH
Q psy12373 84 DLDHLND-IRHAVDIVK 99 (198)
Q Consensus 84 ~~~~~~~-~~~a~~l~~ 99 (198)
++ ..|+ +++|.++.+
T Consensus 210 lc-K~G~~~e~A~~Ll~ 225 (1134)
T 3spa_A 210 MG-RQDQDAGTIERCLE 225 (1134)
T ss_dssp HH-HHTCCHHHHHHHHH
T ss_pred HH-hCCCcHHHHHHHHH
Confidence 88 6676 466766654
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.54 E-value=2 Score=27.98 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=26.7
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 45 IKSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 45 ~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.+++.....+|..+...|+|++|+.+|.+.
T Consensus 40 p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 40 PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347788889999999999999999999986
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.01 E-value=4.7 Score=32.57 Aligned_cols=51 Identities=8% Similarity=-0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHh-CCChhhH
Q psy12373 108 KRIADYCNKH-----GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE-DKGVLTS 180 (198)
Q Consensus 108 ~~~A~~~~~~-----g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~g~~~~A 180 (198)
..++.+|... |+.++|.++|.+| +.|++..+.......|.++.. .|+++.|
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferA----------------------L~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHL----------------------TRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHH----------------------HHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHH----------------------HHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3566666664 6777776665443 225666667778888888766 4777776
No 232
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=83.50 E-value=20 Score=30.51 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH------H-----HHHHHHHHcCCh
Q psy12373 65 RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF------G-----AAIHFLILSKCY 133 (198)
Q Consensus 65 ~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~------~-----~Av~~y~~ag~~ 133 (198)
..-+.-+...|+.++||++|+ ..+.|-.|+=|+... .++....+.+.|.+..-. . -.+-+-+.+|++
T Consensus 154 ~~~I~~~Ll~G~~e~Av~~al-~~~lwa~ALlLAs~~-g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~ 231 (441)
T 3mzk_B 154 QMRVLAFLQTGNHDEALRLAL-SKRDYAIALLVGSLM-GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNS 231 (441)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-HTTCHHHHHHHHHTS-CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-hCCcHHHHHHHHHhc-CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCH
Confidence 445777888999999999999 779999999998654 455555555555442110 0 124455678888
Q ss_pred HHHHHHHHH--------cchhhHHhh-hhh-hcCCCC---------HHHHHHHHHHHHhCCChhhH
Q psy12373 134 QDAFNLSQQ--------HKKLHEFGK-FLL-EEDEPN---------PVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 134 ~~A~~la~~--------~~~~~~~~~-~~~-l~~~~~---------~~~~~~~A~~~e~~g~~~~A 180 (198)
.+++.-+.. ...+..... +++ ...+.. ++.+..++..+.+.|+...|
T Consensus 232 ~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aA 297 (441)
T 3mzk_B 232 KMAIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAA 297 (441)
T ss_dssp HHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchh
Confidence 888775421 113322222 211 112111 57889999999999988777
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.68 E-value=25 Score=31.14 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH------------------------
Q psy12373 27 TCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY------------------------ 77 (198)
Q Consensus 27 ~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------------------------ 77 (198)
+.-.+.++|..+.+.+..++ ...-.+|.|+.++..|+.++|..+|.++-..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence 34446688888877776543 4567899999999999999999988775421
Q ss_pred ------------HHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373 78 ------------DNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134 (198)
Q Consensus 78 ------------~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~ 134 (198)
...+..+. .+|..+.|...-. ...++.....++.+....|.++.+|....+.+.|+
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~-~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~ 443 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELM-YWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred hhHHhhhccChHHHHHHHHH-HCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence 12233333 4566665543221 22344445566777777777777777777666543
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=81.79 E-value=4.7 Score=32.61 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHc-----CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCH
Q psy12373 47 SATTFIQYAKAKEAM-----GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK-HGDF 120 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~-----g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~-~g~~ 120 (198)
+...+..+|..+... |+.+.|.++|.++ +++.= . + +.+....+|+++.. .|+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA------L~LnP-~-~-------------~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL------TRYCS-A-H-------------DPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH------HHHCC-T-T-------------CSHHHHHHHHHTTTTTTCH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH------HHhCC-C-C-------------CchHHHHHHHHHHHhcCCH
Confidence 345778889888884 9999999999988 55443 1 1 23445678998876 5889
Q ss_pred HHHHHHHHHc
Q psy12373 121 GAAIHFLILS 130 (198)
Q Consensus 121 ~~Av~~y~~a 130 (198)
+.|..++.++
T Consensus 257 ~~a~~~L~kA 266 (301)
T 3u64_A 257 AGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 235
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=81.64 E-value=4.4 Score=25.57 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIA 111 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A 111 (198)
.+|..+-..|++++|+.+|.+| |.+|- ++.+...+-.++-.+.++..+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nA------l~Vc~----qP~~LL~i~q~tlP~~vf~~Li 70 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNA------IAVCG----QPQQLLQVLQQTLPPPVFQMLL 70 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHTCS----SCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------HHHcC----CHHHHHHHHHhhCCHHHHHHHH
Confidence 5788999999999999999888 87765 6888888888877777766543
No 236
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=79.98 E-value=8.3 Score=25.60 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY 113 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~ 113 (198)
.+|..+-..|+++.|+.+|.+| |.+|- ++.+...+-.++-.+.++..+...
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nA------l~Vc~----qP~~LL~i~q~TlP~~Vf~~Li~~ 75 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNA------IAVCG----QPQQLLQVLQQTLPPPVFQMLLTK 75 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH------HHHHS----CHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------HHHcC----CHHHHHHHHHhhCCHHHHHHHHHH
Confidence 5688999999999999998887 88886 799999998887666666655443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.78 E-value=16 Score=30.79 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhc--------------CHHHHHHHHhhccCCHHHHHHHHHhc--------CCHHH
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAE--------------DYDNVVRVDLDHLNDIRHAVDIVKAK--------KCTEG 106 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------------~~~~av~l~~~~~~~~~~a~~l~~~~--------~~~~~ 106 (198)
.+...+|+.++..|++.+|.+.....- -+..-+|+|. ..++|.+|..+.++. +.+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 355678999999999999987665532 2356688999 779999998776542 22332
Q ss_pred ---H-HHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 107 ---A-KRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 107 ---~-~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
. ...++++...++|.+|-..|..+
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 24578888889998887776654
No 238
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=78.12 E-value=0.087 Score=36.92 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHcCChHHHHHHHHHcchhhHHhhhhh-hcCCCCHHHHHHHHHHHHhCCChh
Q psy12373 127 LILSKCYQDAFNLSQQHKKLHEFGKFLL-EEDEPNPVELKRLAIHFEEDKGVL 178 (198)
Q Consensus 127 y~~ag~~~~A~~la~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~~g~~~ 178 (198)
|.+.++|.+++.|+++-+.+ .++|. .+.+.++++...+-+||-+.|+.+
T Consensus 16 ykkN~rw~qSI~L~KkDkLy---kDAietAa~S~d~elaEeLL~yFVe~g~kE 65 (125)
T 3qil_A 16 PRGSHMWKQSVELAKKDSLY---KDAMQYASESKDTELAEELLQWFLQEEKRE 65 (125)
T ss_dssp SSSCCCCSSCCCCCSCCCCS---SHHHHTTTSSCCSHHHHHHHHHHTTSCSHH
T ss_pred hhccccHHHHHHHHHhcccH---HHHHHHHHHcCCHHHHHHHHHHHHHcCchH
Confidence 66777888888888887776 44442 356778888888889998888764
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.32 E-value=28 Score=28.45 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=59.4
Q ss_pred HHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHH-------HHHHHhcC------HHHHHH
Q psy12373 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV-------GAYERAED------YDNVVR 82 (198)
Q Consensus 16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~-------~~Y~ka~~------~~~av~ 82 (198)
|+....+...+.=|.+.++|+.|..| ++.-|..+-+.|++..|. +.|.+++- ..+.++
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidL---------L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDI---------LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHH---------HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44444344444445666667666644 344455555555555543 34566552 234455
Q ss_pred HHhhccCC--------HHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 83 VDLDHLND--------IRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 83 l~~~~~~~--------~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
+.. .... .++|+.-..+ .++|+....+|..|-+.+++.+|...|+...+
T Consensus 103 L~~-~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~ 164 (336)
T 3lpz_A 103 CLR-LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTK 164 (336)
T ss_dssp HHT-TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred HHH-hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCC
Confidence 544 2221 1222322232 34677777889999888999999999886444
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.31 E-value=2.3 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=12.4
Q ss_pred HHHHHHHhcCHHHHHHHHh
Q psy12373 67 SVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 67 A~~~Y~ka~~~~~av~l~~ 85 (198)
=.++|.+.||+.+|++++.
T Consensus 137 la~~~~~~Gd~~~A~~~~~ 155 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLG 155 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3456667777777777665
No 241
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.27 E-value=4.2 Score=29.46 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...++..||.++|..|++.+|.+.|.++
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999998
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.73 E-value=7.7 Score=36.91 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=65.5
Q ss_pred ccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh--ccCCHHHHHHHHHhcCCHHHHH
Q psy12373 32 LKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD--HLNDIRHAVDIVKAKKCTEGAK 108 (198)
Q Consensus 32 ~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~--~~~~~~~a~~l~~~~~~~~~~~ 108 (198)
.+.++-+.++..-.+ ++-..+-.|+.+-..|++++|.++|.++-.- +..+ ..........+....+...
T Consensus 825 ~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-----~~~~~~l~~~~~~~~~~~~~~~~~~--- 896 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-----LYSHTSQFAVLREFQEIAEKYHHQN--- 896 (1139)
T ss_dssp HSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-----CTTCCCSCSSHHHHHHHHHTTTSCC---
T ss_pred hhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----hcccchhhhhhcccccccccccccc---
Confidence 344444444443333 4445567788888899999999999887421 0010 0011111111211111000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCH----HHHHHHHHHHHhCCChhhH
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNP----VELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~e~~g~~~~A 180 (198)
.+..|| ...+.+|.+.|.++.++++++..-. .....++ ..+.++-++..+.|+|++|
T Consensus 897 ~l~~YY------~hv~~LFe~~~~~~~vi~fa~lAi~---------~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 897 LLSCYY------LHLSKKLFEESAYIDALEFSLLADA---------SKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp SSHHHH------HHHHHHHHHTSCCHHHHHHHHHHHH---------HCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred cHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHH---------hccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 112332 3567777777888777777644411 1222222 2556666777778888888
No 243
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=72.16 E-value=35 Score=28.31 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 107 AKRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 107 ~~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
...++..++-.|++++|++.|.+|=+
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44678888889999999998876543
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=71.64 E-value=25 Score=25.59 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCH------HHHHHHHHHccCHHHHHhhhhccCChH---HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373 11 GKWTLYESAGNY------EKAATCYIQLKNWTKIGQLLPHIKSAT---TFIQYAKAKEAMGSYRESVGAYERAEDYDNVV 81 (198)
Q Consensus 11 ~Aa~~y~~~g~~------~~Ai~~y~~~~~~~~a~~l~~~~~~~~---l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av 81 (198)
....+.++.|++ ++.+++|.++ +..++.- .+..... +...+|.+.+. ++.+.|.+.|..+ +
T Consensus 18 ~yl~llE~~g~p~~d~~l~rlrd~YerA--ia~~Pp~-k~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~a------~ 87 (161)
T 4h7y_A 18 SLLLKLEKNSVPLSDALLNKLIGRYSQA--IEALPPD-KYGQNESFARIQVRFAELKAI-QEPDDARDYFQMA------R 87 (161)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHH--HHHSCGG-GGTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHHH------H
T ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHHH--HHcCCcc-ccccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH------H
Confidence 346677888999 8888888643 1111100 1112222 44455766444 7888888888877 5
Q ss_pred HHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 82 RVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 82 ~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.++. .+ ...-..+|++=.++|+.++|.+.+.+|
T Consensus 88 ~~hK----kF------------AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 ANCK----KF------------AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHCT----TB------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhH----HH------------HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5432 22 223456788888889998888777654
No 245
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.59 E-value=18 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
...|--++..|+|++|+.+|..+ |+.+.
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~A------ie~l~ 46 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEG------IDMLL 46 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH------HHHHH
Confidence 34567788999999999999988 66555
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.11 E-value=28 Score=29.37 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=40.3
Q ss_pred HHHHHHHcCCHHHHHHH---------------------------HHHccCHHHHHhhhhcc--------CChH----HHH
Q psy12373 12 KWTLYESAGNYEKAATC---------------------------YIQLKNWTKIGQLLPHI--------KSAT----TFI 52 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~---------------------------y~~~~~~~~a~~l~~~~--------~~~~----l~~ 52 (198)
=+++|+..|++..|.++ |...++|.+|..++.++ ..+. +..
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 35777777777777544 44556677765555432 1333 233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
..|+++...++|.+|..+|..+
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 4588888888888888887766
No 247
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=71.08 E-value=23 Score=29.46 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
+...+..+|..++-.|++++|++.|.+|
T Consensus 309 s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 309 SWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444456678888888888888888776
No 248
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.26 E-value=5.8 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...++..||.++|..|++.+|.+.|.++
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999998
No 249
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.26 E-value=5.9 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...++..||.++|..|++.+|.+.|.++
T Consensus 114 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 114 LSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999998
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=67.23 E-value=30 Score=25.12 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=57.5
Q ss_pred ccCChHHHHHHHHHHHHcCCH------HHHHHHHHHhcCHHHHHHHHh-hccCCHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12373 44 HIKSATTFIQYAKAKEAMGSY------RESVGAYERAEDYDNVVRVDL-DHLNDIRHAVDIVKAKKCTEGAKRIADYCNK 116 (198)
Q Consensus 44 ~~~~~~l~~~~A~~~e~~g~~------~~A~~~Y~ka~~~~~av~l~~-~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~ 116 (198)
...+++....+...+|+.|+. +.-.+.|++| |.-.- +....|..=+.| -..+|.+ +.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerA------ia~~Pp~k~~~wrrYI~L---------WIrYA~~-~e 72 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQA------IEALPPDKYGQNESFARI---------QVRFAEL-KA 72 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH------HHHSCGGGGTTCHHHHHH---------HHHHHHH-HH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH------HHcCCccccccHHHHHHH---------HHHHHHH-HH
Confidence 445788888889999999998 7777777776 43221 012234432222 2234555 44
Q ss_pred cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 117 HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 117 ~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
.+|.++|-+.|..+-. + |+.| +.+....|++=.++|+...|
T Consensus 73 i~D~d~aR~vy~~a~~------~---hKkF--------------AKiwi~~AqFEiRqgnl~kA 113 (161)
T 4h7y_A 73 IQEPDDARDYFQMARA------N---CKKF--------------AFVHISFAQFELSQGNVKKS 113 (161)
T ss_dssp HHCGGGCHHHHHHHHH------H---CTTB--------------HHHHHHHHHHHHHTTCHHHH
T ss_pred hcCHHHHHHHHHHHHH------H---hHHH--------------HHHHHHHHHHHHHcccHHHH
Confidence 4777777777665422 2 3333 34555667766677777777
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=67.16 E-value=27 Score=33.33 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 77 YDNVVRVDLDHLNDIRHAVDIVKAK-------KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 77 ~~~av~l~~~~~~~~~~a~~l~~~~-------~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
+...|+.++ ..|++++|..+..+. -.|+... |...|.-|+++|++++|++|.
T Consensus 130 ynaLIdglc-K~G~leeA~~Lf~eM~~m~~kG~~PdvvT-----------YNtLI~Glck~G~~~eA~~Lf 188 (1134)
T 3spa_A 130 LLAFFKCCL-LTDQLPLAHHLLVVHHGQRQKRKLLTLDM-----------YNAVMLGWARQGAFKELVYVL 188 (1134)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHSHHHHTTCCHHH-----------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHhhcCCCCCHhH-----------HHHHHHHHHhCCCHHHHHHHH
Confidence 456677777 677787777775321 1112111 224566666666666666554
No 252
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.39 E-value=6.7 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...++..||.++|..|++.+|.+.|.++
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999998
No 253
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=65.32 E-value=11 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
...|.-.+..|++++|+.+|..+ |+.+.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~a------ie~l~ 44 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNG------LDYLM 44 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence 34566778999999999999988 66655
No 254
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=65.26 E-value=11 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..-|-.....|+|++|+.+|..+ |+.+.
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~A------ie~ll 47 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEG------IDLLL 47 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence 34567778999999999999988 76666
No 255
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.07 E-value=19 Score=33.66 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=60.3
Q ss_pred HHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh-ccCCH-HHHHHHHHhcCCHH
Q psy12373 29 YIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD-HLNDI-RHAVDIVKAKKCTE 105 (198)
Q Consensus 29 y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~-~~~~~-~~a~~l~~~~~~~~ 105 (198)
....+.++-+.+++.-.+ ++-..+-.|+.+-..|++++|.++|+++-- -+... ..... .....+.......
T Consensus 820 L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-----gl~~~~~~~~~~~~~~~ll~~~e~~- 893 (950)
T 4gq2_M 820 LFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-----VLYSHTSQFAVLREFQEIAEKYHHQ- 893 (950)
T ss_dssp HHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-----TTCSSCCSCGGGHHHHHHHHHTTTC-
T ss_pred HHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcccCcccccchhhhhhccCccccc-
Confidence 345566776777766555 555667789999999999999999999841 11110 00011 1122222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH 143 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~ 143 (198)
..++.||. ..+.+|.+.+.++-++++|+..
T Consensus 894 --~~~~~YY~------hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 894 --NLLSCYYL------HLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp --SHHHHHHH------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred --chhHHHHH------HHHHHHHhcCCHHHHHHHHHHH
Confidence 11233443 7788888888888888888544
No 256
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=61.36 E-value=11 Score=25.80 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
..|.-....|+|++|+.+|..+ |++++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~A------ie~l~ 49 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHA------VQYFL 49 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH------HHHHH
Confidence 4456778889999999999988 66665
No 257
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.27 E-value=7.1 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred CCccccchHHHHHHHHHHcCCHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAGNYEKAATCYI 30 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~ 30 (198)
|||. -+.|.+.+..+|+.+.|++...
T Consensus 19 MGF~----~~~a~~AL~~~~n~e~A~~~L~ 44 (47)
T 2ekk_A 19 MGFT----REHAMEALLNTSTMEQATEYLL 44 (47)
T ss_dssp HHCC----HHHHHHHHHHSCSHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4555 3667777777788888887654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.23 E-value=71 Score=26.59 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 122 AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 122 ~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
+-+.+|...|+|.+|+.+..+-... ... +. +.-.-+++....+.|-..+++.++
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~--~~~---~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRE--LKK---LDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HTT---SSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH--Hhc---cccchhHHHHHHHHHHHHHHhccHHHH
Confidence 4456666666666666655332111 000 11 011134555555666666666555
No 259
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.64 E-value=13 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373 50 TFIQYAKAKEAMGSYRESVGAYERAE 75 (198)
Q Consensus 50 l~~~~A~~~e~~g~~~~A~~~Y~ka~ 75 (198)
.+..-|..|-..|.|++||++..++-
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44466888999999999999999883
No 260
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=59.02 E-value=4.5 Score=35.60 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=36.1
Q ss_pred HcCCHHHHHHHHHHhcC-----HHHHHHHHhhc-----cCCHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCHHHHHH
Q psy12373 60 AMGSYRESVGAYERAED-----YDNVVRVDLDH-----LNDIRHAVDIVKAKKCTEGAKRI----ADYCNKHGDFGAAIH 125 (198)
Q Consensus 60 ~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~-----~~~~~~a~~l~~~~~~~~~~~~~----A~~~~~~g~~~~Av~ 125 (198)
...-|.-|+.+...+.. -+..|..++.+ ..+.++++.+|.+.+-++....+ |+-....|.+-+|+-
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~ 557 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIA 557 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 47789999999998653 45566666632 34667778888887777665544 444567788779999
Q ss_pred HHHHcCChHH
Q psy12373 126 FLILSKCYQD 135 (198)
Q Consensus 126 ~y~~ag~~~~ 135 (198)
.|.|||+++.
T Consensus 558 ~f~rA~~~~~ 567 (570)
T 3f3f_C 558 NFSRAGKYEL 567 (570)
T ss_dssp ----------
T ss_pred HHHHcCChhh
Confidence 9999999764
No 261
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=58.56 E-value=22 Score=30.74 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHc--CCHHHHHHHHHHc-cCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHH
Q psy12373 7 TLDRGKWTLYESA--GNYEKAATCYIQL-KNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV 83 (198)
Q Consensus 7 ~~~~~Aa~~y~~~--g~~~~Ai~~y~~~-~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l 83 (198)
.+-..|..+-.++ .+-++|+++-.++ ..++.|...+.++...+-....-++++..+.|+-|..+|.+| .+.
T Consensus 424 eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDyy~~A------A~k 497 (526)
T 2wb7_A 424 EKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDYYVNA------ARK 497 (526)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHHHHHH------HHH
Confidence 3445666666665 5556666665543 456666777765541111223344444444455555555554 777
Q ss_pred HhhccCCHHHHHHHHHh
Q psy12373 84 DLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 84 ~~~~~~~~~~a~~l~~~ 100 (198)
+. . |.-+.|..++.+
T Consensus 498 ~~-y-G~~eqAe~l~~~ 512 (526)
T 2wb7_A 498 AL-N-GDLEQAKIDAEK 512 (526)
T ss_dssp HH-T-TCHHHHHHHHHH
T ss_pred Hh-c-CccHHHHHHHHH
Confidence 76 4 888888888765
No 262
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.49 E-value=5 Score=26.54 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcC-ChHHHHHH
Q psy12373 109 RIADYCNKHGDFGAAIHFLILSK-CYQDAFNL 139 (198)
Q Consensus 109 ~~A~~~~~~g~~~~Av~~y~~ag-~~~~A~~l 139 (198)
.-|..|...|.|++||+.+.+|- -.++|+.+
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888889999988888776 34455444
No 263
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=58.34 E-value=75 Score=26.88 Aligned_cols=124 Identities=10% Similarity=-0.116 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCH-------HHHH----------hhhhc--------------cCChHHHHHHHHH
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNW-------TKIG----------QLLPH--------------IKSATTFIQYAKA 57 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~-------~~a~----------~l~~~--------------~~~~~l~~~~A~~ 57 (198)
+-..++++.+.|++++|..+|.++-.. -... ++... .....+...+++.
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 345667778888888888888753210 0000 01100 0022456677888
Q ss_pred HHHcCCHHHHHHHHHHhcCH-------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHH
Q psy12373 58 KEAMGSYRESVGAYERAEDY-------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIH 125 (198)
Q Consensus 58 ~e~~g~~~~A~~~Y~ka~~~-------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~ 125 (198)
....+..+.|...|.++... -....+-....++.+.|..|-.. .| +++....++++..+.|+.+.|-.
T Consensus 296 ~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888999999999999311 11112222112357767665542 33 34444457777788899999999
Q ss_pred HHHHcCC
Q psy12373 126 FLILSKC 132 (198)
Q Consensus 126 ~y~~ag~ 132 (198)
+|.++-.
T Consensus 376 l~er~~k 382 (493)
T 2uy1_A 376 LFKRLEK 382 (493)
T ss_dssp HHHHSCC
T ss_pred HHHHHHH
Confidence 9998743
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.63 E-value=53 Score=24.00 Aligned_cols=69 Identities=10% Similarity=-0.075 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHh-hh-h------hhcCCCCHHHHHHHHHHHHhCCCh
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFG-KF-L------LEEDEPNPVELKRLAIHFEEDKGV 177 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~-~~-~------~l~~~~~~~~~~~~A~~~e~~g~~ 177 (198)
....+|..+-..|.|.+|...|.+| +.+.+.-.+..... .+ + +.......++-+++|..+.+.+++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA------Lq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA------LQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH------HHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 3456788889999999999999874 44433211110000 00 0 001122348889999999999999
Q ss_pred hhH
Q psy12373 178 LTS 180 (198)
Q Consensus 178 ~~A 180 (198)
.+|
T Consensus 139 ~~A 141 (167)
T 3ffl_A 139 KDA 141 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 265
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.53 E-value=20 Score=22.93 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-|--+.+.|++.+|+.+|..+
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 4466678889999999999888
No 266
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=55.97 E-value=20 Score=22.80 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.-|--+...|+|.+|+.+|..+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 4456678899999999999888
No 267
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=55.52 E-value=19 Score=19.10 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCccccchHHHHHHHHHHc-CCHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA-GNYEKAATCY 29 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~-g~~~~Ai~~y 29 (198)
|||. .++|.+.+..+ ||.+.|++.+
T Consensus 14 mGf~----~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 14 MGFD----PLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TTCC----HHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5655 35555555555 4677777653
No 268
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=55.06 E-value=96 Score=26.20 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHhc-----CH---HH
Q psy12373 9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG-SYRESVGAYERAE-----DY---DN 79 (198)
Q Consensus 9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka~-----~~---~~ 79 (198)
+-..+++..+.|+.++|-.+|.++ . ... .+..++..+|..-...+ +.+.|...|+++- ++ ..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~-------~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-G-------NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-T-------TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-h-------CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344556666677777777777665 1 011 13455555665433334 6888888888762 22 33
Q ss_pred HHHHHhhccCCHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373 80 VVRVDLDHLNDIRHAVDIVKAKKC-TEGAKRIADYCNKHGDFGAAIHFLILSK 131 (198)
Q Consensus 80 av~l~~~~~~~~~~a~~l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag 131 (198)
-+++.+ ..|+.+.+-.+-..... ......+.++=.+.|+.+.+-..|.++-
T Consensus 360 yid~e~-~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 360 FFLFLL-RIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555 67888887766655432 3333445555556788877766666554
No 269
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=54.49 E-value=26 Score=25.14 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++.++.+|-.+.+.|+|+.|.+++.++
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3567788888888889998888887776
No 270
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=52.97 E-value=27 Score=19.60 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.+|+...--=+++.|.++|.+...|+..|+...
T Consensus 10 EiAkLMSLGl~id~A~~~Ye~gi~ye~~ie~~k 42 (47)
T 1pgy_A 10 EIARLMSLGLSIEEATEFYENDVTYERYLEILK 42 (47)
T ss_dssp HHHHHHHHCCCSHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHccCChhhHHHHHHcCchHHHHHHHHH
Confidence 356665556689999999999999999988776
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.76 E-value=23 Score=23.99 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCChhhH---------HhcCChhhHHhhhh
Q psy12373 161 PVELKRLAIHFEEDKGVLTS---------FRVSQQSRAMPCSS 194 (198)
Q Consensus 161 ~~~~~~~A~~~e~~g~~~~A---------~~ag~~~~Al~l~~ 194 (198)
-+.-..||.+++.+++ .++ ..-|+|.+|+.+..
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~ 63 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAH 63 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcC
Confidence 3444456666666666 444 55566666666543
No 272
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=51.20 E-value=36 Score=24.43 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHH
Q psy12373 46 KSATTFIQYAKAKEAMG---SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGA 122 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~ 122 (198)
.+.+....+|-.+...+ +.++++.+++.. ++. ..++ ..++..+.+|--+.+.|+|++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l------l~~-----~~p~---------~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL------LPK-----GSKE---------EQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH------HHH-----SCHH---------HHHHHHHHHHHHHHHTSCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------Hhc-----CCcc---------chHHHHHHHHHHHHHccCHHH
Confidence 35666677777766666 444565555543 110 0111 124456677888888888888
Q ss_pred HHHHHHHc
Q psy12373 123 AIHFLILS 130 (198)
Q Consensus 123 Av~~y~~a 130 (198)
|.+++-++
T Consensus 90 A~~y~~~l 97 (152)
T 1pc2_A 90 ALKYVRGL 97 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776543
No 273
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=50.11 E-value=9.8 Score=34.05 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=38.4
Q ss_pred HHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC--ChhhH-----HhcCChhhHHhhh
Q psy12373 123 AIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK--GVLTS-----FRVSQQSRAMPCS 193 (198)
Q Consensus 123 Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g--~~~~A-----~~ag~~~~Al~l~ 193 (198)
-+.-+.+.|++++|+.||+++..++.+.+++.-... ..++..||+.-| +|... ++.|++.+-+.+.
T Consensus 334 ~i~~L~~~g~~e~A~~LAEky~Df~sLv~l~e~~~~-----~~rl~~Y~~kfg~~~FA~~lf~~yi~~g~~~~LL~~~ 406 (644)
T 3i4r_B 334 LLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDN-----QSRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQP 406 (644)
T ss_dssp TSTTHHHHSCTTTHHHHHHHTSCCHHHHHHHHHHSS-----CTTHHHHHHHSCSSCHHHHTHHHHCC-----------
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCHHHHHHHHHccch-----HHHHHHHHHHhCcCChHHHHHHHHHHCCChhHHhcCc
Confidence 456678899999999999999999888887522111 135666777665 45544 5556555554444
No 274
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=50.11 E-value=94 Score=24.62 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373 103 CTEGAKRIADYCNKHGDFGAAIHFLIL 129 (198)
Q Consensus 103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ 129 (198)
++.+...+|..+.+.|+.++|+++|.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 334444555555555555555555544
No 275
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=50.09 E-value=42 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++..+-+.+...|+..+|.+.|.+.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555555554
No 276
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=49.84 E-value=1.2e+02 Score=25.60 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=8.6
Q ss_pred HHHHHHcCCHHHHHHHH
Q psy12373 55 AKAKEAMGSYRESVGAY 71 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y 71 (198)
++.+...++|.||.-++
T Consensus 42 ~~~h~~~~ny~EAa~~l 58 (436)
T 2yin_A 42 RDLHLDCDNYTEAAYTL 58 (436)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH
Confidence 44455555555555444
No 277
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=49.58 E-value=27 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCccccchHHHHHHHHHHc-CCHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA-GNYEKAATCYI 30 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~-g~~~~Ai~~y~ 30 (198)
|||. .+.|.+.+..+ |+.+.|++...
T Consensus 14 MGF~----~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 14 MGFT----EEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TTSC----HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhCcCHHHHHHHHH
Confidence 6765 35555555555 57888887654
No 278
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=48.22 E-value=19 Score=25.51 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhh-------hc---CCCCHHHHHHHHHHH
Q psy12373 118 GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL-------EE---DEPNPVELKRLAIHF 171 (198)
Q Consensus 118 g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~-------l~---~~~~~~~~~~~A~~~ 171 (198)
||..+-|.-++..|+|++||..+.+.+....+.-++. ++ .+-+|.+.+.+.+.+
T Consensus 1 ~~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqql 64 (139)
T 2vxg_A 1 GAMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQI 64 (139)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC----CCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHH
Confidence 3455567888888999999888888776654444431 11 233566666666654
No 279
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.06 E-value=19 Score=20.49 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=17.0
Q ss_pred CCccccchHHHHHHHHHHc-CCHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA-GNYEKAATCYI 30 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~-g~~~~Ai~~y~ 30 (198)
|||. -++|...+..+ ||.++|++...
T Consensus 18 MGF~----~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 18 MGYE----RERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp TTCC----HHHHHHHHHTTTSCSHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhCCCHHHHHHHHH
Confidence 6665 45666666666 56888877654
No 280
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.86 E-value=30 Score=21.62 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=17.4
Q ss_pred CCccccchHHHHHHHHHHc-CCHHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA-GNYEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~-g~~~~Ai~~y~~ 31 (198)
|||. -++|...+.++ ||.++|++....
T Consensus 39 MGF~----r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 39 MGFD----RTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTCC----HHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCC----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6665 45666666665 568888776653
No 281
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=44.79 E-value=21 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhCCChhhH---------HhcCChhhHH
Q psy12373 162 VELKRLAIHFEEDKGVLTS---------FRVSQQSRAM 190 (198)
Q Consensus 162 ~~~~~~A~~~e~~g~~~~A---------~~ag~~~~Al 190 (198)
+.-..||.+++.++.-+++ ..-|+|.+|+
T Consensus 23 ~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 23 QEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3344455555555555444 4455555554
No 282
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=43.46 E-value=32 Score=19.76 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=11.7
Q ss_pred HHHHHHHHHHc-CCHHHHHHHH
Q psy12373 9 DRGKWTLYESA-GNYEKAATCY 29 (198)
Q Consensus 9 ~~~Aa~~y~~~-g~~~~Ai~~y 29 (198)
-+.+.+.+..+ ||.++|++..
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 34445544444 5677777654
No 283
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=42.88 E-value=1.2e+02 Score=24.67 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=23.2
Q ss_pred ccCCHHHHHH----HHHhcCCHHHH-HHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373 87 HLNDIRHAVD----IVKAKKCTEGA-KRIADYCNKHGDFGAAIHFLILSKC 132 (198)
Q Consensus 87 ~~~~~~~a~~----l~~~~~~~~~~-~~~A~~~~~~g~~~~Av~~y~~ag~ 132 (198)
..|++++++. ++..+|-.+.. ..+-..+...|+..+|+..|.+...
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444443 33445544433 3444555566666666666655443
No 284
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.82 E-value=14 Score=32.58 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=5.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDN 79 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~ 79 (198)
.+.++..+|...-..|.+-+|+.+|.|||+++.
T Consensus 535 ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 535 AKEIYTTLGNQMLSAHNIIESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHcCChhh
Confidence 345666666666666666677777777777654
No 285
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=40.92 E-value=25 Score=22.85 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLS 140 (198)
Q Consensus 111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la 140 (198)
|++|.++||+..|...+.=+--|-+|+|+.
T Consensus 46 a~~fl~kGD~v~Ala~isYa~GwLDAlR~~ 75 (87)
T 2pmr_A 46 SVYYLEKGDHITSFGCITYAHGLLDSLRML 75 (87)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999988876
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.42 E-value=65 Score=30.00 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHccCH-----------HHHHhhhhccC----ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 12 KWTLYESAGNYEKAATCYIQLKNW-----------TKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 12 Aa~~y~~~g~~~~Ai~~y~~~~~~-----------~~a~~l~~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
-++.|...|++++|.++|.++--- .....++...+ ....+.++.+.||..+.++.++++-..|
T Consensus 846 ~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 846 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 367888999999999999876311 11222222221 1235567777777777777777776665
No 287
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=39.81 E-value=35 Score=28.74 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 63 SYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 63 ~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
.+.+|+++|.+++.|+.|+.+|.
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k 112 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYK 112 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHH
Confidence 46778888888888888887776
No 288
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=39.41 E-value=49 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373 109 RIADYCNKHGDF-GAAIHFLILSKCYQDAFNLSQQHKKL 146 (198)
Q Consensus 109 ~~A~~~~~~g~~-~~Av~~y~~ag~~~~A~~la~~~~~~ 146 (198)
.+|+-+|-.||+ .+|.+.+- -|..++|-.++.+.+..
T Consensus 479 ~~ak~yE~aGDyy~~AA~k~~-yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 479 NAAKKHEMAGDYYVNAARKAL-NGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhccHHHHHHHHHHh-cCccHHHHHHHHHHHHH
Confidence 355556666663 34444433 36778887777666554
No 289
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.47 E-value=50 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=18.7
Q ss_pred CCccccchHHHHHHHHHHc--CCHHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA--GNYEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~--g~~~~Ai~~y~~ 31 (198)
|||. -+.|.+.+..+ ++.+.|++....
T Consensus 19 MGF~----~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 19 MGFP----RGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp TTCC----HHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 6776 36677777776 578888877653
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.98 E-value=38 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=25.1
Q ss_pred CccccchHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12373 2 GWGALTLDRGKWTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 2 ~~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~ 32 (198)
|-...-.|++.+.+++..|++.+|-++|...
T Consensus 97 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333457899999999999999999999754
No 291
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=33.60 E-value=49 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=21.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373 55 AKAKEAMGSYRESVGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~ 85 (198)
|++|-+.|++..|..++.=+--|..|+|+..
T Consensus 46 a~~fl~kGD~v~Ala~isYa~GwLDAlR~~~ 76 (87)
T 2pmr_A 46 SVYYLEKGDHITSFGCITYAHGLLDSLRMLH 76 (87)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777777777777777766666666654
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.48 E-value=46 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=24.8
Q ss_pred ccccchHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12373 3 WGALTLDRGKWTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 3 ~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~ 32 (198)
-+..-.|++.+.+|+..|++.+|-++|...
T Consensus 93 ~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333356899999999999999999999754
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.17 E-value=48 Score=25.03 Aligned_cols=31 Identities=16% Similarity=-0.085 Sum_probs=25.3
Q ss_pred CccccchHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12373 2 GWGALTLDRGKWTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 2 ~~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~ 32 (198)
|-+..-.|++.+.+++..|++.+|-++|...
T Consensus 111 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 111 GTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333457899999999999999999999754
No 294
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=31.81 E-value=1.1e+02 Score=27.89 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHHhcC
Q psy12373 49 TTFIQYAKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVKAKK 102 (198)
Q Consensus 49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~~~~ 102 (198)
.++...++++-+.|+++-|.++=.+|= .|...+.+|+ .+|+|+.|.-....-|
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi-~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI-KKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HhccHHHHHHHHhcCC
Confidence 366677999999999999999888764 3678888899 8899998875555443
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.13 E-value=1.1e+02 Score=27.00 Aligned_cols=75 Identities=17% Similarity=-0.037 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCHH
Q psy12373 47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC-----TEGAKRIADYCNKHGDFG 121 (198)
Q Consensus 47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~-----~~~~~~~A~~~~~~g~~~ 121 (198)
++....++++.....++... .+ --++..+ ..|+|+.|.+.....+. +...+..|+.++..|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~-~e---------~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSL-IE---------RRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHH-HH---------HHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHhccccCCChHH-HH---------HHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 45556666655544444332 22 2245566 55899999888776543 334567899999999999
Q ss_pred HHHHHHHHcCC
Q psy12373 122 AAIHFLILSKC 132 (198)
Q Consensus 122 ~Av~~y~~ag~ 132 (198)
+|..+|..+-.
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999887655
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.88 E-value=52 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=25.5
Q ss_pred CccccchHHHHHHHHHHcCCHHHHHHHHHHc
Q psy12373 2 GWGALTLDRGKWTLYESAGNYEKAATCYIQL 32 (198)
Q Consensus 2 ~~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~ 32 (198)
|-...-.|++.+.+|+..|++.+|-++|...
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344457899999999999999999999754
No 297
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=30.81 E-value=25 Score=18.38 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHH
Q psy12373 108 KRIADYCNKHGDFGAA 123 (198)
Q Consensus 108 ~~~A~~~~~~g~~~~A 123 (198)
.+|+.||.+.|+.++|
T Consensus 6 aQW~eYYrsiG~~~eA 21 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEA 21 (33)
T ss_dssp HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcccHHHH
Confidence 3566666666666543
No 298
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=30.51 E-value=79 Score=18.05 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=12.8
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHH
Q psy12373 9 DRGKWTLYES-AGNYEKAATCYIQ 31 (198)
Q Consensus 9 ~~~Aa~~y~~-~g~~~~Ai~~y~~ 31 (198)
-+.+.+.+.. .||.++|++....
T Consensus 26 ~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 26 REANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444444444 3567777776653
No 299
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.03 E-value=58 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.7
Q ss_pred CCccccchHHHHHHHHHHcC--CHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAG--NYEKAATCYI 30 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g--~~~~Ai~~y~ 30 (198)
|||. .+.|.+.+..++ +.+.|++...
T Consensus 29 MGF~----~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 29 MGFP----RARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HTCC----HHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5665 366777777776 5888877664
No 300
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.19 E-value=61 Score=20.10 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=19.3
Q ss_pred CCccccchHHHHHHHHHHcC--CHHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAG--NYEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g--~~~~Ai~~y~~ 31 (198)
|||. .+.|.+.+..++ +.+.|++....
T Consensus 19 MGF~----~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 19 MGFP----MDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HSCC----HHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 6666 467777777776 48888887764
No 301
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=27.67 E-value=1e+02 Score=28.03 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=35.5
Q ss_pred HHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373 124 IHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS 180 (198)
Q Consensus 124 v~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A 180 (198)
++|.+.-|+++-|+.+|++. .. ..++.-..-..+|..|...|+|+.|
T Consensus 344 a~FLl~K~~~elAL~~Ak~A------V~----~aPseF~tW~~La~vYi~l~d~e~A 390 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTS------TE----LALDSFESWYNLARCHIKKEEYEKA 390 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------HH----HCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccCcHHHHHHHHHHH------Hh----cCchhhHHHHHHHHHHHHhccHHHH
Confidence 55666667788888888665 22 2345677888999999999999999
No 302
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=27.51 E-value=1e+02 Score=21.47 Aligned_cols=38 Identities=21% Similarity=0.077 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373 61 MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK 99 (198)
Q Consensus 61 ~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~ 99 (198)
.|+.+++...+.+|.......+..+ ..|.++.+.=.+.
T Consensus 3 ~~~~ee~~~wl~~A~~dl~~A~~~~-~~g~y~~a~F~aq 40 (141)
T 3o10_A 3 VGNPVEARRWLRQARANFSAARNDL-HKNANEWVCFKCY 40 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHGGGT-TTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhhhHHhhHH-hhCccceEeeehh
Confidence 4688899999999988887788788 5688886654433
No 303
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=27.30 E-value=35 Score=30.50 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC--CHHHH-HHHHHHhcCHHHHHHHHh
Q psy12373 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG--SYRES-VGAYERAEDYDNVVRVDL 85 (198)
Q Consensus 16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g--~~~~A-~~~Y~ka~~~~~av~l~~ 85 (198)
+...|.++.|+.+-.+-++|..+++++...++. ..+..+++.-| +|... -+.|.+.|.+...++...
T Consensus 338 L~~~g~~e~A~~LAEky~Df~sLv~l~e~~~~~---~rl~~Y~~kfg~~~FA~~lf~~yi~~g~~~~LL~~~~ 407 (644)
T 3i4r_B 338 LLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQ---SRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQPI 407 (644)
T ss_dssp HHHHSCTTTHHHHHHHTSCCHHHHHHHHHHSSC---TTHHHHHHHSCSSCHHHHTHHHHCC------------
T ss_pred HHHCCCHHHHHHHHHHhCCHHHHHHHHHccchH---HHHHHHHHHhCcCChHHHHHHHHHHCCChhHHhcCcc
Confidence 345677777888877778888777777655433 25566777755 44443 556666666666555443
No 304
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.68 E-value=94 Score=18.55 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=16.3
Q ss_pred CCccccchHHHHHHHHHHc-CCHHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESA-GNYEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~-g~~~~Ai~~y~~ 31 (198)
|||. -++|.+.+..+ |+.++|++....
T Consensus 19 MGF~----~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 19 MGFS----KEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp TTCC----HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5665 34565555555 457777776653
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.34 E-value=1.3e+02 Score=18.88 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHH
Q psy12373 11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAK 56 (198)
Q Consensus 11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~ 56 (198)
.-++=|..-|||+.|+..|.-. .....+.+..++++.....|-.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~--~~qI~k~l~~~~d~~~r~kW~~ 60 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGV--LDQMNKYLYSVKDTHLRQKWQQ 60 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH--HHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHhcCCHHHHHhHHH
Confidence 4456677789999999999633 4455666667777776666644
No 306
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.64 E-value=52 Score=22.53 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhc-CHHHHHHHHhh----ccCCHHHHHHHH
Q psy12373 55 AKAKEAMGSYRESVGAYERAE-DYDNVVRVDLD----HLNDIRHAVDIV 98 (198)
Q Consensus 55 A~~~e~~g~~~~A~~~Y~ka~-~~~~av~l~~~----~~~~~~~a~~l~ 98 (198)
|-..+..|+-++|+++|.++- .+.++|.+-++ ....|++|.++=
T Consensus 29 AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq 77 (116)
T 2dl1_A 29 GLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQ 77 (116)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 444556799999999999974 45677777661 245688887663
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.49 E-value=2.3e+02 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373 106 GAKRIADYCNKHGDFGAAIHFLILS 130 (198)
Q Consensus 106 ~~~~~A~~~~~~g~~~~Av~~y~~a 130 (198)
.......++.+.|+-++|.++|.++
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3333334444445545554444444
No 308
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.27 E-value=1.1e+02 Score=18.21 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCccccchHHHHHHHHHHcC--CHHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAG--NYEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g--~~~~Ai~~y~~ 31 (198)
|||. .+.|.+.+..+| +.+.|++....
T Consensus 19 MGF~----~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 19 MGFP----VHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp TSCC----HHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 7777 467777777775 58888877653
No 309
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=24.17 E-value=86 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 46 KSATTFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
.++..+..+|..++..|+.++|+++|.++
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35667777788887777777777777775
No 310
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.04 E-value=88 Score=19.97 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=16.1
Q ss_pred CCccccchHHHHHHHHHHcCC-HHHHHHHHHH
Q psy12373 1 MGWGALTLDRGKWTLYESAGN-YEKAATCYIQ 31 (198)
Q Consensus 1 ~~~~~~~~~~~Aa~~y~~~g~-~~~Ai~~y~~ 31 (198)
|||. -+.|.+.+..++. .++|++....
T Consensus 39 MGF~----~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 39 MGFD----TVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HSCC----HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCC----HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5554 4556666665543 7777776654
No 311
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.93 E-value=1.5e+02 Score=18.37 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=9.4
Q ss_pred HHHHhhccCCHHHHHHHHHh
Q psy12373 81 VRVDLDHLNDIRHAVDIVKA 100 (198)
Q Consensus 81 v~l~~~~~~~~~~a~~l~~~ 100 (198)
++.+....|+.+.|+.....
T Consensus 48 ~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 48 LQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 44444344555555554443
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.68 E-value=1.2e+02 Score=26.34 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHHccCHHHHHhhhhccC-------ChH---HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373 23 EKAATCYIQLKNWTKIGQLLPHIK-------SAT---TFIQYAKAKEAMGSYRESVGAYERA 74 (198)
Q Consensus 23 ~~Ai~~y~~~~~~~~a~~l~~~~~-------~~~---l~~~~A~~~e~~g~~~~A~~~Y~ka 74 (198)
...++.|...+.++.|..++.+.. +.. .++.+|+..--.++|.+|.+++..|
T Consensus 235 nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 235 NLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456788999999999988887542 122 3345699999999999999998876
Done!