RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12373
(198 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 66/167 (39%)
Query: 61 MGS--YRESVGA---YERAEDYDNVVRVDLDHLND-----IRHAVDIVKAKKCTEGAKRI 110
MG Y+ S A + RA++ H D I +DIV +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADN----------HFKDTYGFSI---LDIVI-----NNPVNL 1672
Query: 111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIH 170
+ G+ G I + ++ + + +K+ + E +E +
Sbjct: 1673 TIHFG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFK------EINE------HSTSYT 1718
Query: 171 FEEDKGVL--TSFRVSQQ------SRAM----------PCSS---GH 196
F +KG+L T F Q +A P + GH
Sbjct: 1719 FRSEKGLLSATQF---TQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Score = 32.3 bits (73), Expect = 0.11
Identities = 33/212 (15%), Positives = 54/212 (25%), Gaps = 82/212 (38%)
Query: 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATT---------FIQYAKAKEAMGSYRESV 68
+Y T +L +T G+L ++K AT I + E+ +
Sbjct: 245 QLAHY--VVTA--KLLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVR 297
Query: 69 GAYE-------RAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-------------- 107
A R + + L D + + EG
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILED---------SLENNEGVPSPMLSISNLTQEQ 348
Query: 108 --KRIADYCNKHGDFGAAIHF-LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL 164
+ + N H G + L+ +S G P L
Sbjct: 349 VQDYV-NKTNSHLPAGKQVEISLVNGA---KNLVVS---------G---------PPQSL 386
Query: 165 KRLAIHFEEDK---GVLTSFRVSQQSRAMPCS 193
L + + K G+ QSR P S
Sbjct: 387 YGLNLTLRKAKAPSGL-------DQSRI-PFS 410
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 35.6 bits (82), Expect = 0.006
Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 33/165 (20%)
Query: 14 TLYESAGNYEKA-------ATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRE 66
+++A E+A A + ++ + + EA+ +
Sbjct: 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA--GMMLKDLQRMPEAVQYIEK 101
Query: 67 SVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-----------------KR 109
+ Y D LD + +D+ KA + A +
Sbjct: 102 ASVMYVENGTPDTAAMA-LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160
Query: 110 IADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL 154
+ + F A Q ++ ++ + K +
Sbjct: 161 ASRLLVRQQKFDEAA------ASLQKEKSMYKEMENYPTCYKKCI 199
Score = 35.3 bits (81), Expect = 0.009
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 21/144 (14%)
Query: 16 YESAGN-YEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y+SA + Y KAA + K + +++ A A ++ ++ +
Sbjct: 32 YDSAASEYAKAAVAFKNAKQLEQAKDA--YLQEAEAHANNRSLFHAAKAFEQAGMMLKDL 89
Query: 75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA----KRIADYCNKHGDFGAAIHFLILS 130
+ V+ I A + + A R + D A+
Sbjct: 90 QRMPEAVQY-------IEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAV------ 135
Query: 131 KCYQDAFNLSQQHKKLHEFGKFLL 154
YQ A + + ++L + + +
Sbjct: 136 HLYQQAAAVFENEERLRQAAELIG 159
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 34.2 bits (78), Expect = 0.023
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Query: 55 AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC 114
A + + E+ + + + + V+V ++H+ ++ A + + ++A
Sbjct: 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQ 1115
Query: 115 NKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLHEFGKFLLEEDE 158
+ G AI I + Y + + E K+L +
Sbjct: 1116 LQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162
Score = 32.7 bits (74), Expect = 0.080
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 40 QLLPHIKSATTFIQYAK---AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND-IRHAV 95
++ H++ + + K A E + E V Y++ E+YDN + ++H D +
Sbjct: 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 1390
Query: 96 ---DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC-YQDAFNLSQQHKKLHEFGK 151
I K + I Y + ++ + + A N + K+L
Sbjct: 1391 FKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 1450
Query: 152 FLLEEDEPNPVE----LKRLAIHFEEDKGVLTS 180
+L N L L I E+ + + TS
Sbjct: 1451 YLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 1483
Score = 29.6 bits (66), Expect = 0.72
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y+ Y+ A Y + N+ ++ L H+ + A+ + +++E A
Sbjct: 1205 CYDE-KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263
Query: 75 EDYD-------NVVRVDLDHLNDI 91
+++ ++V V D L ++
Sbjct: 1264 KEFRLAQMCGLHIV-VHADELEEL 1286
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 33.0 bits (76), Expect = 0.045
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 14 TLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
+ G +E AA Y + L ++G+ A + + + ++ +
Sbjct: 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVE---AQSCYSLGNTYTLLHEFNTAIEYHN 327
Query: 73 RA 74
R
Sbjct: 328 RH 329
Score = 32.7 bits (75), Expect = 0.065
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y + A + + L ++G I A A A+G + ++ E+
Sbjct: 312 TYTLLHEFNTAIEYHNRHLAIAQELGD---RIGEARACWSLGNAHSAIGGHERALKYAEQ 368
Query: 74 A 74
Sbjct: 369 H 369
Score = 31.1 bits (71), Expect = 0.23
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y G+++ A + + L+ + G + +G + ++ Y+R
Sbjct: 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAE---RRANSNLGNSHIFLGQFEDAAEHYKR 288
Query: 74 A 74
Sbjct: 289 T 289
Score = 30.3 bits (69), Expect = 0.32
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y G+Y KA + L + + A + + MG + E+ ER
Sbjct: 95 AYFYLGDYNKAMQYHKHDLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 74 A 74
Sbjct: 152 H 152
Score = 26.9 bits (60), Expect = 5.3
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+AG+ + ++ T+ + + Q A +G Y +++ ++
Sbjct: 57 RLCNAGDCRAGVAFFQAAIQAGTE-----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111
Query: 74 A 74
Sbjct: 112 D 112
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 31.5 bits (71), Expect = 0.12
Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 20/182 (10%)
Query: 10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 69
R + L + ++ KAA + N + G F + A+ S ++
Sbjct: 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA--YKCFKSGGNSVNAVDSLENAIQ 105
Query: 70 AYER-------AEDYDNVVRVDLDHLNDIRHAVDI-VKAKKCTEGA----------KRIA 111
+ A + + + L+D A+D A + + A
Sbjct: 106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 112 DYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHF 171
D G + A LSQ K + K L + + V R
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 172 EE 173
+
Sbjct: 226 QS 227
Score = 30.4 bits (68), Expect = 0.34
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-----HIKSATTFIQYAKAKEAMGSYRE 66
K + +E+AA +Q ++ + L +K+A + EA +Y E
Sbjct: 23 KLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE 82
Query: 67 SVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC-NKHGDFGAAIH 125
+ ++ + N V N I+ + ++ + + N D+ AI
Sbjct: 83 AYKCFKSGGNSVNAVDS---LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139
Query: 126 FLILSKCYQDAFNLSQQHKKLHEFGKFLL 154
CY+ A Q + + K +
Sbjct: 140 ------CYELAGEWYAQDQSVALSNKCFI 162
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 31.4 bits (72), Expect = 0.15
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 14 TLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
Y +YEKA +++ L ++ I A A+G++ +++ E
Sbjct: 271 NTYTLLQDYEKAIDYHLKHLAIAQELKD---RIGEGRACWSLGNAYTALGNHDQAMHFAE 327
Query: 73 RA 74
+
Sbjct: 328 KH 329
Score = 29.9 bits (68), Expect = 0.42
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y +Y KA + L IG + A + +G++ E++ +R
Sbjct: 52 AYFYLHDYAKALEYHHHDLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 74 A 74
Sbjct: 109 H 109
Score = 29.9 bits (68), Expect = 0.51
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y G +E A+ Y + L ++ A + + Y +++ + +
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288
Query: 74 A 74
Sbjct: 289 H 289
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ GN+ A + Q L + G + A +G + + Y++
Sbjct: 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAE---RRAYSNLGNAYIFLGEFETASEYYKK 248
Query: 74 A 74
Sbjct: 249 T 249
Score = 27.2 bits (61), Expect = 3.5
Identities = 5/61 (8%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+G+ + + ++ T+ + + Q A + Y +++ +
Sbjct: 14 RLCKSGDCRAGVSFFEAAVQVGTED-----LKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 74 A 74
Sbjct: 69 D 69
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 31.3 bits (71), Expect = 0.16
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 13/150 (8%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y+ +Y+KA L+ I A + + A + + G + +V +++
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQK 247
Query: 74 A-----EDYDNVVRVDLDHLNDIRHAV-DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL 127
A E +++ L L+ KA + E FL
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH---ITARSHKFYKELFL 304
Query: 128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEED 157
L Y++ + + H L F K L
Sbjct: 305 FLQAVYKETVDERKIHDLLSYFEKKNLHAY 334
Score = 30.9 bits (70), Expect = 0.25
Identities = 17/157 (10%), Positives = 39/157 (24%), Gaps = 31/157 (19%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y+ +G+ + A + + K+ + + G +++ E
Sbjct: 231 SYDRSGDDQMAVEHF---QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287
Query: 75 ---------EDYDNVVRV------DLDHLNDIRHAVDIVKAKK----CTEGAKRIADYCN 115
+ Y + + I + + K A+ A
Sbjct: 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347
Query: 116 KHGDFGAAIHFLILSKCYQDAFNLSQQHKK---LHEF 149
F A F Y+ + K L+ +
Sbjct: 348 SSCHFEQAAAF------YRKVLKAQEDILKGECLYAY 378
Score = 25.9 bits (57), Expect = 9.7
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y +A Y + K + I+ A + A+A M S+ +
Sbjct: 110 YEFDQKEYVEAIGYYREAEKELPFVSD---DIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 74 A 74
A
Sbjct: 167 A 167
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 31.1 bits (70), Expect = 0.22
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 12/153 (7%)
Query: 40 QLLPHIKSATTFIQYAK---AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD 96
++ H++ + + K A E + E V Y++ E+YDN + ++H D
Sbjct: 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339
Query: 97 ----IVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC-YQDAFNLSQQHKKLHEFGK 151
I K + I Y + ++ + + A N + K+L
Sbjct: 340 FKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 399
Query: 152 FLLEEDEPNPVE----LKRLAIHFEEDKGVLTS 180
+L N L L I E+ + + TS
Sbjct: 400 YLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 432
Score = 28.0 bits (62), Expect = 2.6
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEA 60
Y+ A Y + N+ ++ L H+ +Y A +
Sbjct: 158 KMYDAAKLLYNNVSNFGRLASTLVHLG------EYQAAVDG 192
Score = 26.9 bits (59), Expect = 5.2
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFI----------QYAKAKEAMGSY 64
S+G + + N + + L+ HI + A F Q AKA+ G
Sbjct: 11 SSGLVPRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMV 70
Query: 65 RESVGAYERAEDYDNVVRV 83
+E++ +Y +A+D + + V
Sbjct: 71 KEAIDSYIKADDPSSYMEV 89
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 31.1 bits (71), Expect = 0.23
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y +Y KA + L IG + A + +G++ E++ +R
Sbjct: 56 AYFYLHDYAKALEYHHHDLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 74 A 74
Sbjct: 113 H 113
Score = 30.3 bits (69), Expect = 0.41
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 14 TLYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
Y +YEKA +++ L ++ I A A+G++ +++ E
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELND---RIGEGRACWSLGNAYTALGNHDQAMHFAE 331
Query: 73 RA 74
+
Sbjct: 332 KH 333
Score = 27.6 bits (62), Expect = 2.9
Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVG 69
Y + GN+++A + L+ ++G + + + + + S
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENT 375
Query: 70 AYERA 74
+ +
Sbjct: 376 EIDSS 380
Score = 27.3 bits (61), Expect = 3.5
Identities = 5/61 (8%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+G+ + + ++ T+ + + Q A + Y +++ +
Sbjct: 18 RLCKSGDCRAGVSFFEAAVQVGTED-----LKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 74 A 74
Sbjct: 73 D 73
Score = 26.5 bits (59), Expect = 7.0
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ GN+ A + Q L + G + A +G + + Y++
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAE---RRAYSNLGNAYIFLGEFETASEYYKK 252
Query: 74 A 74
Sbjct: 253 T 253
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 30.2 bits (69), Expect = 0.29
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
Y +YEKA +++ L ++ I A A+G++ +++ E+
Sbjct: 98 TYTLLQDYEKAIDYHLKHLAIAQELKD---RIGEGRACWSLGNAYTALGNHDQAMHFAEK 154
Query: 74 A 74
Sbjct: 155 H 155
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 30.2 bits (69), Expect = 0.40
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 99 KAKKCTEGAKRIADYCNKHG 118
KA+ C G + +YC G
Sbjct: 63 KARLCVRGKHLLYEYCAARG 82
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 30.4 bits (68), Expect = 0.43
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 55 AKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG-------- 106
A+ + G +S+ Y+ AE+YD V+ + L+D A D+ + +
Sbjct: 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVL 509
Query: 107 -AKRIADYCNKHGDFGAAIHFLILSKCYQ 134
A+R+A + IH C
Sbjct: 510 LARRMASIYFDNAGISRQIHVKNKEICML 538
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 30.0 bits (68), Expect = 0.45
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ G ++ A ++ L+ IG + K + Y E++ + +
Sbjct: 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261
Query: 74 A 74
A
Sbjct: 262 A 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.61
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 23/123 (18%)
Query: 78 DNVVRVDL-----DHLNDIRHAVDIV------KAKKCTEGAKRIADYCNKHG---DFGAA 123
NV R+ L ++R A +++ K D C +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFK 183
Query: 124 IHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRV 183
I +L L C L K L++ + + + + L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQAELRRLLK 239
Query: 184 SQQ 186
S+
Sbjct: 240 SKP 242
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 29.4 bits (66), Expect = 0.66
Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 32/158 (20%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
S YE A + + + + + + + +G ++ + +
Sbjct: 233 CKNSQSQYEDAIPYFKRAIAVFEESNI---LPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
Query: 74 A-----EDYDNVVRVDLDHLN----------DIRHAVDIVKAKKCT----EGAKRIADYC 114
+ D + + + L I+ D +++K + A +A Y
Sbjct: 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349
Query: 115 NKHGDFGAAIHFLILSKCYQDAFNLSQQHKK---LHEF 149
++ +F A + + + Q + L+E
Sbjct: 350 HERKNFQKASAY------FLKVEQVRQLIQGGVSLYEI 381
Score = 29.4 bits (66), Expect = 0.69
Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 22/155 (14%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ YE A + + + Q T K + Y +++ ++R
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 74 AEDYDNVVRVDLDHLNDIRHAV-----------DIVKAKKCTEGAKRIADYCNKHGDFGA 122
A + + L + A I KA + K GD
Sbjct: 250 AIAV----FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY---SQKAGDVIY 302
Query: 123 AIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED 157
F L Y + +L D
Sbjct: 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337
Score = 25.9 bits (57), Expect = 8.8
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 16 YESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y A + + + I+ A F + +++ M S+ +A
Sbjct: 113 ELDQREYLSAIKFFKKAESKLIFVKD---RIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 28.5 bits (64), Expect = 0.72
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ + + G Y KA + P+ ++ F YA +G Y + V +
Sbjct: 35 STFRTLGEYRKAEAVL------ANGVKQFPNHQALRVF--YAMVLYNLGRYEQGVELLLK 86
Query: 74 A 74
Sbjct: 87 I 87
Score = 25.1 bits (55), Expect = 9.3
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 11/58 (18%)
Query: 20 GNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
G +A Y I L A ++ +G YR++
Sbjct: 4 GLEAQAVPYYEKAIASG--------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG 53
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 29.4 bits (67), Expect = 0.75
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 136 AFNLSQQHK--KLHEFGK-FLLEEDEPNPVELKRLAI 169
A+N+++++K +L+E G+ F + P E++ L+
Sbjct: 562 AYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEYLSG 598
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 28.8 bits (65), Expect = 0.82
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ AGN++ A C+++ + + + + ++ + A G + YE+
Sbjct: 75 VERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 74 A 74
+
Sbjct: 133 S 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.87
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 141 QQHKKLHEFGKFLLEEDEPNPVELKRLAIH 170
Q KKL L D+ P LAI
Sbjct: 20 QALKKLQ--ASLKLYADDSAPA----LAIK 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 29.0 bits (66), Expect = 0.94
Identities = 8/61 (13%), Positives = 13/61 (21%), Gaps = 2/61 (3%)
Query: 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
ES +A + P + TT G + +
Sbjct: 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTV--NTTLRSLGALYRRQGKLEAAHTLEDC 277
Query: 74 A 74
A
Sbjct: 278 A 278
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 15 LYESAGNYEKAATCYIQ--LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 71
Y G Y+ A T Y + + K G + ++ + +E+ R+S
Sbjct: 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDN--KPIWMHAEEREESKDKRRDSAPYG 235
Query: 72 ERA 74
E
Sbjct: 236 EYG 238
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus
casei}
Length = 294
Score = 28.3 bits (63), Expect = 1.6
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 119 DFGAAIHFLILSKCYQDAFNLSQQ--HKKLHEFGK---FLLEEDEPNPVELK-------- 165
+ A I F + K QD + L + H F + F + + + V
Sbjct: 43 NRHAPILFPSIGKSNQDQYRLGAKTYPMSQHGFARDYDFDVSDKSDSAVTFTQHQNAETL 102
Query: 166 -------RLAIHFE-EDKGVLTSFRVS-QQSRAMPCSSGHHP 198
LA+ + D G+ + V+ S++MP + G HP
Sbjct: 103 KKFPFEYTLAVTYMLTDGGLSVHYTVTNDDSKSMPFALGFHP 144
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 28.7 bits (64), Expect = 1.6
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 15 LYESAGNYEKAATCYIQ-LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
+ + + + A + L K A T+ A + Y ++ A +
Sbjct: 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEK--PWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 74 A 74
Sbjct: 542 G 542
Score = 27.1 bits (60), Expect = 3.9
Identities = 7/60 (11%), Positives = 11/60 (18%), Gaps = 8/60 (13%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y Y+ A Q L A A ++ +
Sbjct: 525 AYRKLKMYDAAIDALNQGL------LLST--NDANVHTAIALVYLHKKIPGLAITHLHES 576
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 28.0 bits (63), Expect = 1.8
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 8 LDRGKWTLYESAGNYEKAATCY---IQLK-----NWTKIGQLLPHIKSATTFIQYAKAKE 59
L RG L G ++A + ++ QL+ A
Sbjct: 75 LQRGH--LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV-KADEMQRLRSQALDAF 131
Query: 60 AMGSYRESVGAYERA 74
Y ++ ++
Sbjct: 132 DGADYTAAITFLDKI 146
Score = 27.6 bits (62), Expect = 2.6
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 15 LYESAGNYEKAATCY---IQLK-NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGA 70
LY G++E + + ++L + + +K I+ A+ G Y ++
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256
Query: 71 YERA 74
YE
Sbjct: 257 YESV 260
Score = 26.9 bits (60), Expect = 4.9
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 27/138 (19%)
Query: 14 TLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGA 70
T++ + G + A I LK +Q G E+
Sbjct: 45 TVFLAMGKSKAALPDLTKVIALKM-----------DFTAARLQRGHLLLKQGKLDEAEDD 93
Query: 71 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS 130
+++ ++ + + +VKA + + D + D+ AAI
Sbjct: 94 FKKV------LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAI------ 140
Query: 131 KCYQDAFNLSQQHKKLHE 148
+ +L E
Sbjct: 141 TFLDKILEVCVWDAELRE 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 26 ATCYIQLKNWTKIGQLLPHIKSATTFIQY-----------AKAKEAMGSYRESVGAYERA 74
A C+++L+++ K A+ I+ ++A E +G ++V +R
Sbjct: 72 AACHLKLEDYDKA------ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
Query: 75 EDYD 78
+
Sbjct: 126 VSLE 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 27.4 bits (61), Expect = 2.0
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75
+ + G E+A + L + + + A + ++++ Y A
Sbjct: 46 FYNKGRIEEAEVFFRFL--------CIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97
Query: 76 DYD 78
Sbjct: 98 ALG 100
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 26.4 bits (58), Expect = 2.3
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75
++ Y++A CY + I LL +K + + + Y +RAE
Sbjct: 25 LDAESRYQQALVCYQE-----GIDMLLQVLKGTKESSKRCVLRTKISGYM------DRAE 73
Query: 76 D 76
+
Sbjct: 74 N 74
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 27.7 bits (62), Expect = 2.4
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 37/140 (26%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA- 74
+AG A + + P + + + A AMG + ++ +
Sbjct: 36 LLAAGQLADALSQF------HAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87
Query: 75 ---------------------------EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA 107
+D+ V++ + + ++K+ +
Sbjct: 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLR 147
Query: 108 KRIADYCNKHGDFGAAIHFL 127
+ + GD+ AAI FL
Sbjct: 148 SQALNAFGS-GDYTAAIAFL 166
Score = 27.0 bits (60), Expect = 4.5
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 15 LYESAGNYEKAATCY---IQLK-NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGA 70
LY G++E + + ++L + + +K I+ A+ G Y ++
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279
Query: 71 YERAEDYD 78
YE +
Sbjct: 280 YESVMKTE 287
Score = 27.0 bits (60), Expect = 4.8
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 11/75 (14%)
Query: 8 LDRGKWTLYESAGNYEKAATCY---IQLK-----NWTKIGQLLPHIKSATTFIQYAKAKE 59
L RG L G ++A + ++ QL+ A
Sbjct: 98 LQRGH--LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI-KSDEMQRLRSQALNAF 154
Query: 60 AMGSYRESVGAYERA 74
G Y ++ ++
Sbjct: 155 GSGDYTAAIAFLDKI 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 26.9 bits (60), Expect = 2.5
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 26 ATCYIQLKNW-------TKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD 78
A CY++++ + +L +S + + M SY E++ +RA
Sbjct: 50 ALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 27.5 bits (62), Expect = 2.6
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 2/61 (3%)
Query: 14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER 73
E G + + + P + TT G + + E
Sbjct: 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTV--TTTLKNLGALYRRQGKFEAAETLEEA 303
Query: 74 A 74
A
Sbjct: 304 A 304
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 14 TLYESAGNYEKAATCYIQ--LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMGSYRESVGA 70
+ Y G +++A T Y + + + G + ++ + +E G ++
Sbjct: 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN--KPIWMHAEEREECKGKQKDGTSF 260
Query: 71 YERA 74
E
Sbjct: 261 GEYG 264
Score = 26.7 bits (60), Expect = 5.6
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 14 TLYESAGNYEKAATCYIQ-LKNWTKI-GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 71
Y S G YE A Q L++ K G P + AT A Y+++
Sbjct: 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLL 92
Query: 72 ERA 74
A
Sbjct: 93 NDA 95
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 27.3 bits (60), Expect = 2.6
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 13 WTLY---ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 69
W Y + N+ ++ + + N IG K + + +++K E + E+
Sbjct: 83 WIWYINLFLSNNFHESENTFKYMFN-KGIGT-----KLSLFYEEFSKLLENAQFFLEAKV 136
Query: 70 AYERA 74
E
Sbjct: 137 LLELG 141
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 27.4 bits (61), Expect = 2.7
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
Y+ NY+KA Y ++ Q P + A+ + G ++++ YE+
Sbjct: 63 AYKKNRNYDKAYLFY------KELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Score = 26.6 bits (59), Expect = 4.3
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 12 KWTLYESAGNYEKAATCY---IQLK-----NWTKIGQLLPHIKSATTFIQYAKAKEAMGS 63
K + AG +A + + I L + S+ + A A + +
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 64 YRESVGAYERA 74
Y ++ Y+
Sbjct: 70 YDKAYLFYKEL 80
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 27.5 bits (61), Expect = 2.8
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEA 60
Y+ A Y + N+ ++ L H+ +Y A +
Sbjct: 136 KMYDAAKLLYNNVSNFGRLASTLVHLG------EYQAAVDG 170
Score = 26.4 bits (58), Expect = 7.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRV 83
Q AKA+ G +E++ +Y +A+D + + V
Sbjct: 37 QLAKAQLQKGMVKEAIDSYIKADDPSSYMEV 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 27.8 bits (62), Expect = 2.8
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLL-PHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
E G + A + + + S ++ K+AM +E G + A
Sbjct: 83 NEGLGKFADAMFDL------SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136
Query: 75 EDYDN 79
Sbjct: 137 TATPT 141
Score = 27.0 bits (60), Expect = 4.9
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 14/63 (22%)
Query: 15 LYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 71
+ NY++A + +L ++ +IQ A + + +
Sbjct: 313 MNFILQNYDQAGKDFDKAKELDP-----------ENIFPYIQLACLAYRENKFDDCETLF 361
Query: 72 ERA 74
A
Sbjct: 362 SEA 364
Score = 26.6 bits (59), Expect = 5.5
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 4 GALTLDRGKWTLYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEA 60
L T + N+ +A +L +S I A+ K
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDP-----------RSEQAKIGLAQMKLQ 461
Query: 61 MGSYRESVGAYERAEDYD 78
E++ +E + D
Sbjct: 462 QEDIDEAITLFEESADLA 479
Score = 26.6 bits (59), Expect = 6.9
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 16 YESAGNYEKAATCY---IQLK-NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 71
Y S G+ +K ++LK +++K+ ++ A A E +G + +++
Sbjct: 49 YVSVGDLKKVVEMSTKALELKPDYSKV------------LLRRASANEGLGKFADAMFDL 96
Query: 72 ERAEDYDN 79
+
Sbjct: 97 SVLSLNGD 104
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 27.6 bits (62), Expect = 2.9
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG 69
+ ++ + ++ + L + + GQL S Y A EA
Sbjct: 296 LSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMK-PFISS 351
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 26.9 bits (60), Expect = 3.1
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 26 ATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAKA-------KEAMGSYRESVGAYERA 74
A +L ++ + I I+ + +A + A+ Y ++ + A
Sbjct: 45 AAALAKLMSFPEA------IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
Query: 75 EDYD 78
D
Sbjct: 99 RTKD 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 26.9 bits (60), Expect = 3.2
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 26 ATCYIQLKNWTKIGQLLPHIKSATTFIQ----YAK-------AKEAMGSYRESVGAYERA 74
+ Y++ + + + AT I+ Y K + A+G +R ++ YE
Sbjct: 54 SLAYLRTECYGYA------LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV 107
Query: 75 EDYD---NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH 117
++ N I +A E + + D +
Sbjct: 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 26.8 bits (60), Expect = 3.3
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 26/89 (29%)
Query: 16 YESAGNYEKAATCY---IQLK--------N----WTKIGQLLPHIKSATTFIQ----YAK 56
N+E A Y I+L N ++K+G ++ I Y+K
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 57 A-------KEAMGSYRESVGAYERAEDYD 78
A ++ + E+V Y++A + D
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELD 110
>3os7_A Galactose mutarotase-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: PG4 TLA; 1.80A {Clostridium
acetobutylicum}
Length = 341
Score = 27.2 bits (60), Expect = 3.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 166 RLAIHFE-EDKGVLTSFRVSQQS-RAMPCSSGHHP 198
+ + +E KG+ + V S MP S G+H
Sbjct: 152 QFKLSYELSSKGLKQTTSVVNLSSEEMPLSVGYHS 186
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 27.2 bits (60), Expect = 3.6
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 166 RLAIHFE-EDKGVLTSFRVS-QQSRAMPCSSGHHP 198
+++ + + +F V + M G HP
Sbjct: 110 EFRVNYNLMNNLLEENFSVVNKSDETMIFGVGGHP 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.4 bits (58), Expect = 4.4
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75
+G YE A + L + + F+ ++AMG Y ++ +Y
Sbjct: 31 QYQSGXYEDAHXVFQAL--------CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82
Query: 76 DYDNVVRVDLDHLNDI-RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI 124
D H + ++ +A+ A+ + + + +
Sbjct: 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 26.9 bits (59), Expect = 4.6
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 29/156 (18%)
Query: 16 YESAGNYEKAATCY---IQLK----NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESV 68
Y G+ A TC+ + + + +L +++ + +++ + +V
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 69 --------GAYERAEDYDNVVRVDLDHLNDIRHAVD-IVKAKKCTEGAKRIAD-YCNK-- 116
Y Y ++ + + A+ +A+K A D + N+
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266
Query: 117 ----HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE 148
+G A+ + + A L + +
Sbjct: 267 LHKYEESYGEAL------EGFSQAAALDPAWPEPQQ 296
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 26.6 bits (58), Expect = 4.7
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 1/102 (0%)
Query: 18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY 77
+ GN A Y ++ K+ L + + + +
Sbjct: 46 AQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNST 105
Query: 78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD 119
+ + A + KA A +
Sbjct: 106 KERSSI-FAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQ 146
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.8 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 29 YIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG 62
Y L N L PHI SAT + ++AMG
Sbjct: 300 YRSLDNIF----LTPHIGSATH-----ETRDAMG 324
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 25.8 bits (56), Expect = 5.3
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY-ERA 74
+ AGNYE+A Y + L +K Q KAK++ R Y +RA
Sbjct: 28 EDKAGNYEEALQLYQH-----AVQYFLHVVKYEA---QGDKAKQS---IRAKCTEYLDRA 76
Query: 75 E 75
E
Sbjct: 77 E 77
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 26.8 bits (60), Expect = 5.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 29 YIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG 62
+ LKN +LPHI SAT + + M
Sbjct: 284 LLTLKNCV----ILPHIGSATH-----RTRNTMS 308
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 26.5 bits (59), Expect = 6.0
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 14/63 (22%)
Query: 15 LYESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY 71
+ + GN+ A I+ F + +A Y ++ ++
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTT-----------TDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 72 ERA 74
+
Sbjct: 166 VKV 168
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 26.6 bits (59), Expect = 6.5
Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 18/160 (11%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA- 74
+ +A N+ +A Y +L P + + + G + + +A
Sbjct: 35 FFTAKNFNEAIKYY------QYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKAL 86
Query: 75 -------EDYDN--VVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH 125
+ L + D + ++ +GA +
Sbjct: 87 EIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVL 146
Query: 126 FLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK 165
LSK + + L F E + V
Sbjct: 147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 25.3 bits (55), Expect = 6.5
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75
++A YE+A T Y + L+ +K + Y RAE
Sbjct: 23 LDTATQYEEAYTAYYN-----GLDYLMLALKYEKNPKSKDLIRAKFTEYL------NRAE 71
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair,
protein structure, spectroscopy, DNA-PK, KU86, KU80,
protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Length = 120
Score = 25.6 bits (56), Expect = 7.0
Identities = 4/29 (13%), Positives = 16/29 (55%)
Query: 54 YAKAKEAMGSYRESVGAYERAEDYDNVVR 82
+ K+ + + ++RE + + ++N ++
Sbjct: 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLK 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 26.4 bits (59), Expect = 7.1
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 16 YESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
G YE A + ++ +++ + +K+ +G+ +G +
Sbjct: 48 EYEKGEYETAISTLNDAVEQG---------REMRAD--YKVISKSFARIGNAYHKLGDLK 96
Query: 73 RAEDYDN 79
+ +Y
Sbjct: 97 KTIEYYQ 103
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 25.6 bits (57), Expect = 7.3
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 26/87 (29%)
Query: 18 SAGNYEKAATCY---IQL--KN----------WTKIGQLLPHIKSATTFIQ----YAK-- 56
S GN + A CY I+L N + K G + + + K
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75
Query: 57 -----AKEAMGSYRESVGAYERAEDYD 78
A E + + E+ YE ++
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 26.4 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 29 YIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG 62
Y L N L PHI SA T +A+E M
Sbjct: 275 YYDLPNTF----LFPHIGSAAT-----QAREDMA 299
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 25.3 bits (56), Expect = 7.9
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 16 YESAGNYEKAATCY---IQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
Y G+Y K I++ + + A + + + Y++++ Y
Sbjct: 48 YFEKGDYNKCRELCEKAIEVGR----ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103
Query: 73 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKK 102
++ D L + A I+K ++
Sbjct: 104 KSLAEHR----TPDVLKKCQQAEKILKEQE 129
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 25.8 bits (56), Expect = 9.8
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
W Y ++ + L + IGQ +S+ + +YA E+ G ++++ Y+
Sbjct: 123 WMQY--VNYIDEPVELFSFLAH-HHIGQ-----ESSIFYEEYANYFESRGLFQKADEVYQ 174
Query: 73 RA 74
+
Sbjct: 175 KG 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,130,791
Number of extensions: 183285
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 173
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)