RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12373
(198 letters)
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 31.4 bits (71), Expect = 0.060
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 19/131 (14%)
Query: 17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED 76
Y+ A Y + N+ ++ L H+ + A+ + +++E A ++
Sbjct: 25 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 84
Query: 77 YDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDA 136
+ L + +++ Y G F I + A
Sbjct: 85 FRLAQMCGLHIVVHADELEELIN-------------YYQDRGYFEELITM------LEAA 125
Query: 137 FNLSQQHKKLH 147
L + H +
Sbjct: 126 LGLERAHMGMF 136
Score = 31.4 bits (71), Expect = 0.061
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 15 LYESAGNYEKAATCYIQLKNWTKIGQLL 42
LY + N+ + A+ + L +
Sbjct: 36 LYNNVSNFGRLASTLVHLGEYQAAVDGA 63
Score = 28.3 bits (63), Expect = 0.69
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAK---EAMGSYRESVGAYER 73
G + + A Y + K ++ H++ + + K E + E V Y++
Sbjct: 131 AHMGMFTELAILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 186
Query: 74 AEDYDNVVRVDLDHLND 90
E+YDN + ++H D
Sbjct: 187 YEEYDNAIITMMNHPTD 203
Score = 25.2 bits (55), Expect = 5.3
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 16/78 (20%)
Query: 108 KRIADYCNKHGDFGAAIHF-------------LILSKCYQDAFNLSQQHKK---LHEFGK 151
+++ D C + AA L+ YQ A + +++ E
Sbjct: 18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 77
Query: 152 FLLEEDEPNPVELKRLAI 169
++ E ++ L I
Sbjct: 78 ACVDGKEFRLAQMCGLHI 95
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B,
SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 26.3 bits (58), Expect = 0.81
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAY-ERA 74
+ AGNYE+A Y + L +K KAK++ R Y +RA
Sbjct: 21 EDKAGNYEEALQLYQH-----AVQYFLHVVKYEAQG---DKAKQS---IRAKCTEYLDRA 69
Query: 75 EDYDNVVR 82
E ++
Sbjct: 70 EKLKEYLK 77
>d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC
{Bacillus subtilis [TaxId: 1423]}
Length = 77
Score = 26.4 bits (58), Expect = 0.84
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRV---DLDHLNDIRHAVDIV 98
Y + K + + Y A ++++ L+ + D +
Sbjct: 14 DYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPY 62
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 150
Score = 26.4 bits (58), Expect = 1.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 107 AKRIADYCNKHGDFGAAIHFLILS----KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPV 162
AKR Y N G G + + +L + Y +A S +H+F + + PNPV
Sbjct: 17 AKRHNIYSNILGFLG-GVSWAMLVARTCQLYPNA-IASTL---VHKFFLVFSKWEWPNPV 71
Query: 163 ELKR 166
LK+
Sbjct: 72 LLKQ 75
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 25.2 bits (55), Expect = 2.4
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE 75
++ Y++A CY + I LL +K + + + Y +RAE
Sbjct: 25 LDAESRYQQALVCYQE-----GIDMLLQVLKGTKESSKRCVLRTKISGYM------DRAE 73
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 25.7 bits (55), Expect = 3.9
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 2 GWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAM 61
G+ L + E+A +AAT Y K G +K+A + EA
Sbjct: 20 GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDS--FLKAADYQKKAGNEDEAG 77
Query: 62 GSYRESVGAYERAEDYDNVV 81
+Y E+ ++ + N V
Sbjct: 78 NTYVEAYKCFKSGGNSVNAV 97
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 25.0 bits (54), Expect = 6.0
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 128 ILSKCYQDAFNLSQQHK-KLHEFGKFLLEEDEPNPVELKRL 167
I++ CY+ A + ++++ +L + LLE++ EL+R+
Sbjct: 150 IVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRI 190
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 25.4 bits (54), Expect = 6.3
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYE 72
+ GN E+A Y + L + A A + G +E++ Y+
Sbjct: 312 ANIKREQGNIEEAVRLYRKA--------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 73 RA 74
A
Sbjct: 364 EA 365
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 152
Score = 24.4 bits (53), Expect = 8.4
Identities = 4/30 (13%), Positives = 16/30 (53%)
Query: 53 QYAKAKEAMGSYRESVGAYERAEDYDNVVR 82
+ K+ + + ++RE + + ++N ++
Sbjct: 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLK 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 762,176
Number of extensions: 33802
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 23
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)