Query psy12375
Match_columns 216
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 17:32:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4291|consensus 97.8 1.2E-05 2.6E-10 81.8 2.4 107 92-216 113-220 (1043)
2 KOG4291|consensus 97.5 4.4E-05 9.6E-10 77.7 1.9 76 135-215 94-174 (1043)
3 KOG0437|consensus 52.8 7.6 0.00017 40.8 1.6 18 95-112 645-662 (1080)
4 PF08632 Zds_C: Activator of m 31.1 21 0.00046 26.0 0.6 12 103-114 39-50 (53)
5 COG1806 Uncharacterized protei 25.0 45 0.00098 30.7 1.7 31 92-126 195-225 (273)
6 smart00154 ZnF_AN1 AN1-like Zi 23.4 44 0.00096 21.9 1.0 12 2-13 27-38 (39)
7 KOG3848|consensus 21.8 73 0.0016 31.7 2.5 33 135-167 148-180 (516)
8 KOG4802|consensus 18.4 1.2E+02 0.0027 30.2 3.2 83 104-193 181-265 (516)
9 cd09030 DUF1425 Putative perip 15.8 1.7E+02 0.0037 21.6 2.8 10 109-119 54-63 (101)
10 PF06903 VirK: VirK protein; 15.6 1E+02 0.0023 24.5 1.7 21 146-166 42-62 (100)
No 1
>KOG4291|consensus
Probab=97.77 E-value=1.2e-05 Score=81.79 Aligned_cols=107 Identities=20% Similarity=0.131 Sum_probs=89.8
Q ss_pred CceeccHHHHHH-HHHhhceeeccCCCCCCCCCcccccccCCcceeeeeeecccccceeeeeEEEeeceeeecCCCCCCC
Q psy12375 92 DYYVISEGRLRE-IRAEFLYWFFDRGGDDNEGDYQKDIHNSSPQIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHF 170 (216)
Q Consensus 92 ~~Y~i~~~rL~e-iR~~fMYwf~D~gg~~d~gdyq~~i~~s~~q~~~nLnf~lPFfGFRfNYT~vSvNGYL~Fs~ppe~~ 170 (216)
..+.|.-.+|.. .+...++|++......+-++++.+++.++-+..+.+. .+|||+++ +|....|+++ .+..
T Consensus 113 ~~~~~~~~~L~~~~t~~~~p~~~~~~~~~~~~~~~~~a~~s~~~lk~~ip--~~f~~v~~-~~vy~~~~g~-----~~~~ 184 (1043)
T KOG4291|consen 113 YGTPIIVSFLNFLVTFPAAPTWLPDPPYTGDDREEFDAMISSYKLKQGIP--VFFFGVDR-DTVYLRNNGL-----QEVG 184 (1043)
T ss_pred cceEeeeeeecceeecccCceeecCCCCCCCccccchhhhhHHHHhcCCc--cccccccc-ceEEEecCcc-----hhhc
Confidence 345666677777 6889999999999999999999999999999888887 78999999 7777777765 3445
Q ss_pred CCCccCCCCCCCCCCCCceeeeeeccccccccccCCCCCCCCcccC
Q psy12375 171 TYPLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYF 216 (216)
Q Consensus 171 t~Pl~FP~~dWPkk~DPSfIA~Flsk~rIg~~~~~d~d~r~pGVYf 216 (216)
.+|-+|+...||-..|++|+|+|+++++ ++.||||+
T Consensus 185 ~~~s~~~~~~~~~~~~~~f~~~f~~~~~----------~~~pG~i~ 220 (1043)
T KOG4291|consen 185 GPPSQFNTNSGSYTYSTAFFAPFWSKVC----------PGTPGVIY 220 (1043)
T ss_pred CcCCcccccCCccccCcccccccccccc----------CCCCceEE
Confidence 5667789999999999999999999998 56677764
No 2
>KOG4291|consensus
Probab=97.49 E-value=4.4e-05 Score=77.74 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred eeeee--eecccccceeeeeEEEeeceeeecCCCCCCCCCCccCC---CCCCCCCCCCceeeeeeccccccccccCCCCC
Q psy12375 135 IHKNF--NFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFP---NKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQ 209 (216)
Q Consensus 135 ~~~nL--nf~lPFfGFRfNYT~vSvNGYL~Fs~ppe~~t~Pl~FP---~~dWPkk~DPSfIA~Flsk~rIg~~~~~d~d~ 209 (216)
.++|+ +|++||+|+++||++.+++|||.|... .-..|+.+| .++|++..++++++...+|+.|+ +.-...
T Consensus 94 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~L~~~~t--~~~~p~~~~~~~~~~~~~~~~~a~~s~~~lk~~ip---~~f~~v 168 (1043)
T KOG4291|consen 94 GTIDENNQVHCPFYGGLSNYGTPIIVSFLNFLVT--FPAAPTWLPDPPYTGDDREEFDAMISSYKLKQGIP---VFFFGV 168 (1043)
T ss_pred ceecCCCccccceeeeccccceEeeeeeecceee--cccCceeecCCCCCCCccccchhhhhHHHHhcCCc---cccccc
Confidence 66666 999999999999999999999999222 222565554 66999999999999999999999 444444
Q ss_pred CCCccc
Q psy12375 210 RTPGVY 215 (216)
Q Consensus 210 r~pGVY 215 (216)
++-+||
T Consensus 169 ~~~~vy 174 (1043)
T KOG4291|consen 169 DRDTVY 174 (1043)
T ss_pred ccceEE
Confidence 445555
No 3
>KOG0437|consensus
Probab=52.82 E-value=7.6 Score=40.83 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=16.9
Q ss_pred eccHHHHHHHHHhhceee
Q psy12375 95 VISEGRLREIRAEFLYWF 112 (216)
Q Consensus 95 ~i~~~rL~eiR~~fMYwf 112 (216)
.|.++-|+++|+||+|||
T Consensus 645 ~i~~e~L~~lr~eF~Y~Y 662 (1080)
T KOG0437|consen 645 AIPEEALSNLRREFEYFY 662 (1080)
T ss_pred CccHHHHHHHHHhhhccc
Confidence 478999999999999999
No 4
>PF08632 Zds_C: Activator of mitotic machinery Cdc14 phosphatase activation C-term; InterPro: IPR013941 This region of the Zds1 protein is critical for sporulation and has also been shown to suppress the calcium sensitivity of Zds1 deletions []. The C-terminal motif is common to both Zds1 and Zds2 proteins, both of which are putative interactors of Cdc55 and are required for the completion of mitotic exit and cytokinesis. They both contribute to timely Cdc14 activation during mitotic exit and are required downstream of separase to facilitate nucleolar Cdc14 release[].
Probab=31.06 E-value=21 Score=26.04 Aligned_cols=12 Identities=25% Similarity=1.160 Sum_probs=9.3
Q ss_pred HHHHhhceeecc
Q psy12375 103 EIRAEFLYWFFD 114 (216)
Q Consensus 103 eiR~~fMYwf~D 114 (216)
-+=|+|||||-+
T Consensus 39 VllSNfMy~YL~ 50 (53)
T PF08632_consen 39 VLLSNFMYWYLN 50 (53)
T ss_pred HHHHHHHHHHHH
Confidence 356899999954
No 5
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=45 Score=30.68 Aligned_cols=31 Identities=32% Similarity=0.279 Sum_probs=23.6
Q ss_pred CceeccHHHHHHHHHhhceeeccCCCCCCCCCccc
Q psy12375 92 DYYVISEGRLREIRAEFLYWFFDRGGDDNEGDYQK 126 (216)
Q Consensus 92 ~~Y~i~~~rL~eiR~~fMYwf~D~gg~~d~gdyq~ 126 (216)
-+-+|+++||.+||+|=+ ...|..+.++|-.
T Consensus 195 ~GLti~peRL~~IR~eRL----~~~~~~~~s~Ya~ 225 (273)
T COG1806 195 FGLTISPERLSAIREERL----KSLGLRENSRYAS 225 (273)
T ss_pred EEEecCHHHHHHHHHHHh----hccCCCCcccccc
Confidence 467899999999999862 4556677777753
No 6
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=23.39 E-value=44 Score=21.85 Aligned_cols=12 Identities=50% Similarity=1.273 Sum_probs=10.4
Q ss_pred CCCCCcCCCCCc
Q psy12375 2 RIPADHQCDHDF 13 (216)
Q Consensus 2 ~~~~~~~~~~~~ 13 (216)
|.|++|.|..||
T Consensus 27 R~~e~H~C~~~~ 38 (39)
T smart00154 27 RLPEDHDCPGDY 38 (39)
T ss_pred CCccccCCcccc
Confidence 789999998876
No 7
>KOG3848|consensus
Probab=21.82 E-value=73 Score=31.67 Aligned_cols=33 Identities=18% Similarity=0.525 Sum_probs=27.7
Q ss_pred eeeeeeecccccceeeeeEEEeeceeeecCCCC
Q psy12375 135 IHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPP 167 (216)
Q Consensus 135 ~~~nLnf~lPFfGFRfNYT~vSvNGYL~Fs~pp 167 (216)
..++|.|.|||||---.-.+|---|||.-|+..
T Consensus 148 ~~v~LsFdFPFYGHflrnITiATGGFiytGd~v 180 (516)
T KOG3848|consen 148 VRVRLSFDFPFYGHFLRNITIATGGFIYTGDVV 180 (516)
T ss_pred heEEEEecCcccCceeeeeEEeecceEEehHHH
Confidence 468999999999987777788888998888764
No 8
>KOG4802|consensus
Probab=18.35 E-value=1.2e+02 Score=30.20 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=50.5
Q ss_pred HHHhhceeeccCCCCCCCCCcccccccCCcceeeeeeeccc--ccceeeeeEEEeeceeeecCCCCCCCCCCccCCCCCC
Q psy12375 104 IRAEFLYWFFDRGGDDNEGDYQKDIHNSSPQIHKNFNFQLP--FFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKDW 181 (216)
Q Consensus 104 iR~~fMYwf~D~gg~~d~gdyq~~i~~s~~q~~~nLnf~lP--FfGFRfNYT~vSvNGYL~Fs~ppe~~t~Pl~FP~~dW 181 (216)
.|+..=|-+--. ..++--.|+-..+..+-+-+-.+++ | ||-|| ---|+.+|+++|+.|-.. ||.+---+.=
T Consensus 181 vr~~w~~g~has--e~~~thwQtv~~t~~e~~~~~t~~r-PgRwyefr--vaavn~~G~rGFs~PSkp--f~ssk~pkaP 253 (516)
T KOG4802|consen 181 VRSHWGRGFHAS--ELGPTHWQTVEKTMEENTYIFTDMR-PGRWYEFR--VAAVNAYGFRGFSEPSKP--FPSSKNPKAP 253 (516)
T ss_pred hhhhhccccccc--ccccccceeeeecCCCceeeeeecC-cceeEEEE--EeeeecccccccCCCCCC--CCCCCCCCCC
Confidence 555554444211 2244456665555433222222222 2 55444 457899999999999776 6766666777
Q ss_pred CCCCCCceeeee
Q psy12375 182 PKKNDPSFIGIF 193 (216)
Q Consensus 182 Pkk~DPSfIA~F 193 (216)
|.-+|-++||.-
T Consensus 254 p~P~dl~l~~v~ 265 (516)
T KOG4802|consen 254 PSPNDLKLIGVQ 265 (516)
T ss_pred cCcccceeeeee
Confidence 888999999943
No 9
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=15.81 E-value=1.7e+02 Score=21.61 Aligned_cols=10 Identities=40% Similarity=1.248 Sum_probs=7.8
Q ss_pred ceeeccCCCCC
Q psy12375 109 LYWFFDRGGDD 119 (216)
Q Consensus 109 MYwf~D~gg~~ 119 (216)
+||| |+.|-.
T Consensus 54 f~Wy-D~~G~~ 63 (101)
T cd09030 54 FYWY-DAQGLE 63 (101)
T ss_pred EEEE-CCCCCC
Confidence 6787 998873
No 10
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=15.58 E-value=1e+02 Score=24.45 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.2
Q ss_pred cceeeeeEEEeeceeeecCCC
Q psy12375 146 FGFRFNYTRVSRHGYLEFSDP 166 (216)
Q Consensus 146 fGFRfNYT~vSvNGYL~Fs~p 166 (216)
.|++.+=-||..+|.|+|||-
T Consensus 42 Gg~~i~ayrI~~D~tlaFSd~ 62 (100)
T PF06903_consen 42 GGLRIDAYRITPDGTLAFSDT 62 (100)
T ss_pred cccceeeEEEeCCCeEEEecc
Confidence 588889999999999999996
Done!