Query psy12375
Match_columns 216
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 17:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lmt_A Calmodulin-related prot 22.5 31 0.0011 23.9 1.2 22 95-118 3-24 (148)
2 1wg2_A Zinc finger (AN1-like) 17.2 51 0.0017 23.4 1.4 12 2-13 43-54 (64)
3 3i5g_B Myosin regulatory light 16.5 66 0.0022 23.1 1.8 26 92-119 6-31 (153)
4 1wfh_A Zinc finger (AN1-like) 16.0 57 0.0019 23.2 1.4 12 2-13 43-54 (64)
5 2lv7_A Calcium-binding protein 15.0 1.3E+02 0.0043 20.7 3.0 26 92-119 26-51 (100)
6 1ivz_A Hypothetical protein 11 14.4 39 0.0013 26.4 0.2 25 190-214 57-81 (132)
7 1wff_A Riken cDNA 2810002D23 p 12.4 69 0.0024 23.8 1.0 12 2-13 54-65 (85)
8 2kgr_A Intersectin-1; structur 12.3 1.3E+02 0.0044 20.9 2.3 25 92-118 4-28 (111)
9 1x4w_A Hypothetical protein FL 11.7 78 0.0027 22.6 1.1 12 2-13 46-57 (67)
10 3efb_A Probable SOR-operon reg 11.5 1.3E+02 0.0045 24.4 2.5 23 96-118 178-205 (266)
No 1
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=22.52 E-value=31 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=18.0
Q ss_pred eccHHHHHHHHHhhceeeccCCCC
Q psy12375 95 VISEGRLREIRAEFLYWFFDRGGD 118 (216)
Q Consensus 95 ~i~~~rL~eiR~~fMYwf~D~gg~ 118 (216)
.||++++++||+-|- .||++|+
T Consensus 3 ~lt~eqi~el~~~F~--~~D~d~~ 24 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFV--QFDKEGT 24 (148)
T ss_dssp SCCSHHHHHHHHHHH--HHHCSSC
T ss_pred CCCHHHHHHHHHHHH--HHcCCCC
Confidence 389999999999875 4688776
No 2
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=17.24 E-value=51 Score=23.42 Aligned_cols=12 Identities=50% Similarity=1.204 Sum_probs=10.0
Q ss_pred CCCCCcCCCCCc
Q psy12375 2 RIPADHQCDHDF 13 (216)
Q Consensus 2 ~~~~~~~~~~~~ 13 (216)
|.|.+|.|..||
T Consensus 43 R~~e~H~C~fDy 54 (64)
T 1wg2_A 43 RYPEKHECSFDF 54 (64)
T ss_dssp CSSTTTTCCCCC
T ss_pred CCccccCCCcch
Confidence 789999997655
No 3
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=16.48 E-value=66 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=20.2
Q ss_pred CceeccHHHHHHHHHhhceeeccCCCCC
Q psy12375 92 DYYVISEGRLREIRAEFLYWFFDRGGDD 119 (216)
Q Consensus 92 ~~Y~i~~~rL~eiR~~fMYwf~D~gg~~ 119 (216)
....||++.+++||+-|- .||+.|+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~--~~D~d~dG 31 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFT--MIDQDRDG 31 (153)
T ss_dssp -CTTCCHHHHHHHHHHHH--HHCCSTTS
T ss_pred cccCCCHHHHHHHHHHHH--HHCCCCCC
Confidence 345699999999999874 57887764
No 4
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=16.01 E-value=57 Score=23.23 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=10.1
Q ss_pred CCCCCcCCCCCc
Q psy12375 2 RIPADHQCDHDF 13 (216)
Q Consensus 2 ~~~~~~~~~~~~ 13 (216)
|.|.+|.|..||
T Consensus 43 Ry~e~H~C~fDy 54 (64)
T 1wfh_A 43 RYPEVHGCTFDF 54 (64)
T ss_dssp CSTTTTTCCCCC
T ss_pred CCcccCCCCchh
Confidence 789999997665
No 5
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=14.99 E-value=1.3e+02 Score=20.70 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=20.0
Q ss_pred CceeccHHHHHHHHHhhceeeccCCCCC
Q psy12375 92 DYYVISEGRLREIRAEFLYWFFDRGGDD 119 (216)
Q Consensus 92 ~~Y~i~~~rL~eiR~~fMYwf~D~gg~~ 119 (216)
..-.|+++.+++||+.|- .||++|+.
T Consensus 26 ~~~~l~~~~~~el~~~F~--~~D~d~~G 51 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFK--VFDRDGNG 51 (100)
T ss_dssp SCCCCCGGGHHHHHHHHH--HTCSSCSS
T ss_pred ccccCCHHHHHHHHHHHH--HHcCCCCC
Confidence 356799999999999875 45777663
No 6
>1ivz_A Hypothetical protein 1110008I14RIK; structural genomics, SEA domain, mucin 16, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.41.1
Probab=14.42 E-value=39 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=19.4
Q ss_pred eeeeeccccccccccCCCCCCCCcc
Q psy12375 190 IGIFYSKCRIGSIRTTDIDQRTPGV 214 (216)
Q Consensus 190 IA~Flsk~rIg~~~~~d~d~r~pGV 214 (216)
|...|++|++.++|+...++..+||
T Consensus 57 l~~~Yi~~~Vi~lrp~~~~g~~v~v 81 (132)
T 1ivz_A 57 IKSYFSDCQVLAFRSVSNNNNHTGV 81 (132)
T ss_dssp TTTTEEEECCCEEECCSSCSSCCEE
T ss_pred cccccccCEEEEEEecCCCCCceEE
Confidence 7788999999999988756655554
No 7
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=12.44 E-value=69 Score=23.80 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=10.0
Q ss_pred CCCCCcCCCCCc
Q psy12375 2 RIPADHQCDHDF 13 (216)
Q Consensus 2 ~~~~~~~~~~~~ 13 (216)
|.|.+|.|..||
T Consensus 54 Ry~e~H~C~fDy 65 (85)
T 1wff_A 54 RYAEAHGCNYDY 65 (85)
T ss_dssp CSTGGGTCCSCC
T ss_pred CCccCCCCcchh
Confidence 789999998654
No 8
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=12.31 E-value=1.3e+02 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=19.4
Q ss_pred CceeccHHHHHHHHHhhceeeccCCCC
Q psy12375 92 DYYVISEGRLREIRAEFLYWFFDRGGD 118 (216)
Q Consensus 92 ~~Y~i~~~rL~eiR~~fMYwf~D~gg~ 118 (216)
..|.++++..+++++-|- -||++|+
T Consensus 4 ~~w~ls~~~~~~l~~~F~--~~D~d~d 28 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFN--SHDKTMS 28 (111)
T ss_dssp CCSSSCHHHHHHHHHHHH--TTSCSSC
T ss_pred CCCCCCHHHHHHHHHHHH--HHCCCCC
Confidence 478899999999998765 4577665
No 9
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.73 E-value=78 Score=22.61 Aligned_cols=12 Identities=42% Similarity=1.079 Sum_probs=10.1
Q ss_pred CCCCCcCCCCCc
Q psy12375 2 RIPADHQCDHDF 13 (216)
Q Consensus 2 ~~~~~~~~~~~~ 13 (216)
|.|.+|.|..||
T Consensus 46 Ry~e~H~C~fDy 57 (67)
T 1x4w_A 46 RLPEQHDCTFDH 57 (67)
T ss_dssp CSTGGGTCSSCS
T ss_pred CCccccCCcccc
Confidence 789999997766
No 10
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=11.46 E-value=1.3e+02 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHh-----hceeeccCCCC
Q psy12375 96 ISEGRLREIRAE-----FLYWFFDRGGD 118 (216)
Q Consensus 96 i~~~rL~eiR~~-----fMYwf~D~gg~ 118 (216)
++++++++|++. -+-+|||..|.
T Consensus 178 ~s~~~~~~L~~~gaVGdi~~~ffd~~G~ 205 (266)
T 3efb_A 178 YGGEESDDLNARQVAGDICSRFFDIHGA 205 (266)
T ss_dssp SCHHHHHHHHHTTCCEEETTEEECTTSC
T ss_pred CCHHHHHHHHHCCcEEEEecccccCCCC
Confidence 799999999876 34578899887
Done!