BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy12375
MRIPADHQCDHDFDFHTHLLSNVSNERLIRVKKQIYTPPYQTNRNGYQPSYNSANQQSNQ
ISFLNPPYRQNYGPTSNRYAPATFRSGGLYNDYYVISEGRLREIRAEFLYWFFDRGGDDN
EGDYQKDIHNSSPQIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKD
WPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYF

High Scoring Gene Products

Symbol, full name Information P value
mesh protein from Drosophila melanogaster 2.0e-45
K03H1.5 gene from Caenorhabditis elegans 1.8e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy12375
        (216 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0051004 - symbol:mesh "mesh" species:7227 "Drosoph...   490  2.0e-45   1
WB|WBGene00010540 - symbol:K03H1.5 species:6239 "Caenorha...   157  1.8e-09   1


>FB|FBgn0051004 [details] [associations]
            symbol:mesh "mesh" species:7227 "Drosophila melanogaster"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0007160 "cell-matrix
            adhesion" evidence=IEA] [GO:0019991 "septate junction assembly"
            evidence=IMP] [GO:0005920 "smooth septate junction" evidence=IDA]
            [GO:0007156 "homophilic cell adhesion" evidence=IMP] [GO:0061028
            "establishment of endothelial barrier" evidence=IMP]
            InterPro:IPR003886 Pfam:PF06119 PROSITE:PS51220 SMART:SM00539
            EMBL:AE014297 GO:GO:0016021 Gene3D:2.60.40.10 InterPro:IPR013783
            GO:GO:0007160 InterPro:IPR014756 SUPFAM:SSF81296 InterPro:IPR001846
            Pfam:PF00094 SMART:SM00216 PROSITE:PS51233 InterPro:IPR000436
            Pfam:PF00084 SMART:SM00032 SUPFAM:SSF57535 PROSITE:PS50923
            InterPro:IPR005533 Pfam:PF03782 SMART:SM00723 PROSITE:PS50856
            eggNOG:NOG299565 GeneTree:ENSGT00700000104580 EMBL:BT032891
            EMBL:BT011360 EMBL:AY122109 RefSeq:NP_001163781.1
            RefSeq:NP_733418.1 RefSeq:NP_733419.1 UniGene:Dm.10424
            ProteinModelPortal:Q0KHY3 SMR:Q0KHY3 STRING:Q0KHY3 PaxDb:Q0KHY3
            PRIDE:Q0KHY3 EnsemblMetazoa:FBtr0085779 EnsemblMetazoa:FBtr0085780
            GeneID:43688 KEGG:dme:Dmel_CG31004 UCSC:CG31004-RA
            FlyBase:FBgn0051004 InParanoid:Q0KHY3 OrthoDB:EOG47SQVK
            PhylomeDB:Q0KHY3 GenomeRNAi:43688 NextBio:835253 Bgee:Q0KHY3
            Uniprot:Q0KHY3
        Length = 1431

 Score = 490 (177.5 bits), Expect = 2.0e-45, P = 2.0e-45
 Identities = 89/148 (60%), Positives = 109/148 (73%)

Query:    71 NYGPTSNRYAPATFRS--GGLYNDYYVISEGRLREIRAEFLYWFFDRGGDDNEGDYQKDI 128
             N+ P +N   P T+ +  GG     Y I+  RL E+R+ F+YW+FD+      GDYQ DI
Sbjct:   131 NWDPNNNVAPPTTYSTAAGG-----YTITAARLAELRSNFMYWYFDKDMYGGRGDYQFDI 185

Query:   129 HNSSPQIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKDWPKKNDPS 188
             H S  Q+HKN NFQLPF+GFRFNYTR+S +GYLEFSDPP++ TYPL FP KDWP K DPS
Sbjct:   186 HASMTQLHKNLNFQLPFYGFRFNYTRLSLNGYLEFSDPPEYLTYPLVFPIKDWPAKRDPS 245

Query:   189 FIGIFYSKCRIGSIRTTDIDQRTPGVYF 216
             F+GIF+SKCR+G I  +DIDQRTPGVYF
Sbjct:   246 FMGIFFSKCRVGRIYPSDIDQRTPGVYF 273


>WB|WBGene00010540 [details] [associations]
            symbol:K03H1.5 species:6239 "Caenorhabditis elegans"
            [GO:0007160 "cell-matrix adhesion" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] InterPro:IPR002909
            InterPro:IPR003886 Pfam:PF06119 PROSITE:PS51220 SMART:SM00429
            SMART:SM00539 GO:GO:0007160 InterPro:IPR014756 SUPFAM:SSF81296
            InterPro:IPR001846 Pfam:PF00094 SMART:SM00216 PROSITE:PS51233
            InterPro:IPR000436 Pfam:PF00084 SMART:SM00032 SUPFAM:SSF57535
            PROSITE:PS50923 EMBL:Z29560 InterPro:IPR005533 Pfam:PF03782
            SMART:SM00723 PROSITE:PS50856 eggNOG:NOG299565
            GeneTree:ENSGT00700000104580 PIR:H88569 PIR:S41028
            RefSeq:NP_499205.1 ProteinModelPortal:P34501 SMR:P34501
            PaxDb:P34501 EnsemblMetazoa:K03H1.5 GeneID:176404
            KEGG:cel:CELE_K03H1.5 UCSC:K03H1.5 CTD:176404 WormBase:K03H1.5
            HOGENOM:HOG000019105 InParanoid:P34501 OMA:TPRFGRK NextBio:892432
            Uniprot:P34501
        Length = 1385

 Score = 157 (60.3 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 33/70 (47%), Positives = 37/70 (52%)

Query:   138 NFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKDWPKKNDPSFIGIFYSKC 197
             N  F  PFFGFRFNYT V   G L F  PP     P +FPN  WPK+ D SF+  FY+  
Sbjct:   143 NLGFDCPFFGFRFNYTMVYPMGMLSFGLPP-FSAPPWTFPNPAWPKQRDHSFVAAFYADA 201

Query:   198 RIGSIRTTDI 207
                 I  T I
Sbjct:   202 MFQWIGNTKI 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       216   0.00088  112 3  11 22  0.37    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  206 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  20.69u 0.08s 20.77t   Elapsed:  00:00:24
  Total cpu time:  20.69u 0.08s 20.77t   Elapsed:  00:00:25
  Start:  Thu Aug 15 13:40:10 2013   End:  Thu Aug 15 13:40:35 2013

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