RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12375
         (216 letters)



>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
          Length = 897

 Score = 30.2 bits (69), Expect = 0.94
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 96  ISEGRLREIRAEFLYWF 112
           I +  L E+R EFLYW+
Sbjct: 513 IPKEILEEMREEFLYWY 529


>gnl|CDD|131325 TIGR02272, gentisate_1_2, gentisate 1,2-dioxygenase.  This family
           consists of gentisate 1,2-dioxygenases. This
           ring-opening enzyme acts in salicylate degradation that
           goes via gentisate rather than via catechol. It converts
           gentisate to maleylpyruvate. Some putative gentisate
           1,2-dioxygenases are excluded by a relatively high
           trusted cutoff score because they are too closely
           related to known examples of 1-hydroxy-2-naphthoate
           dioxygenase. Therefore some homologs may be bona fide
           gentisate 1,2-dioxygenases even if they score below the
           given cutoffs.
          Length = 335

 Score = 29.7 bits (67), Expect = 1.1
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 121 EGDY-QKDIHNSSPQIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNK 179
           EGD   +  HN  P  HK  +   P F + +  +R +        +        L + N 
Sbjct: 181 EGDSLARYGHNMLPVRHKRSDRSSPIFNYPYERSREALDDLTRTGEWDPWHGLKLRYVNP 240

Query: 180 ---DWPKKNDPSFIGIFYSKCRIGSIRTTD 206
               +P     +FI +     R  + R+TD
Sbjct: 241 ATGGYPMPTIGAFIQLLPKGFRTATYRSTD 270


>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
          Length = 465

 Score = 27.6 bits (62), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 146 FGFRFNYTRVSRHGYLEFSDPPDH 169
           FG +  Y R+SR G   F    DH
Sbjct: 191 FGLKPTYGRLSRAGSFPFVASLDH 214


>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 27.6 bits (62), Expect = 6.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 14/43 (32%)

Query: 89  LYNDYYVISEGR----LREIRAEFLYWFFDRGGDDNEGDYQKD 127
           LYNDY  + EGR    L   RAE+++          E +Y+ D
Sbjct: 185 LYNDYQTVLEGRKELTLNRERAEYVF----------ENEYEPD 217


>gnl|CDD|219361 pfam07277, SapC, SapC.  This family contains a number of bacterial
           SapC proteins approximately 250 residues long. In
           Campylobacter fetus, SapC forms part of a
           paracrystalline surface layer (S-layer) that confers
           serum resistance.
          Length = 220

 Score = 26.8 bits (60), Expect = 7.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 90  YNDYYVISEGRLREIRAEFL 109
            N +Y I E +L  +  E L
Sbjct: 176 LNGFYTIDEEKLNALSDEAL 195


>gnl|CDD|233658 TIGR01962, NuoD, NADH dehydrogenase I, D subunit.  This model
           recognizes specificially the D subunit of NADH
           dehydrogenase I complex. It excludes the related chain
           of NAD(P)H-quinone oxidoreductases from chloroplast and
           Synechocystis, where the quinone may be plastoquinone
           rather than ubiquinone. This subunit often appears as a
           C/D fusion [Energy metabolism, Electron transport].
          Length = 386

 Score = 26.9 bits (60), Expect = 9.3
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 78  RYAPATFRSGGLYNDYYVISEGRLREIRAEFLYWF 112
           R   A FR GG+  D   + E  L EIR EFL  F
Sbjct: 144 RMHSAYFRIGGVALD---LPENWLEEIR-EFLEQF 174


>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
          Length = 568

 Score = 27.1 bits (60), Expect = 9.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 68  YRQNYGPTSNRYAPATFRSG--GLYNDYYVISEGRLREIRAEFLYWFFDRGGDD 119
           Y Q +   S  Y    F+ G  G+    YV       E+ AEF+Y + ++GG D
Sbjct: 121 YLQEHAKGSVLYG---FKGGPAGIMKCKYV-------ELTAEFIYPYRNQGGFD 164


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,485,804
Number of extensions: 1065810
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 23
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)