BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12376
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1
Length = 1341
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
+R + L S++G LA+GT +GNL +YNH TS+++PVLGKHT I +LA+
Sbjct: 96 MRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHTKKITCGCWNSENLLAL 155
Query: 57 GTARGNLTVYNHM--TSKRVPVLGKHTKSKPS 86
G +TV N T ++ PV KS+PS
Sbjct: 156 GGEDKMITVSNQEGDTIRQTPV-----KSEPS 182
>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2
Length = 1342
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 3 LRYYIFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV------GQVLAI 56
+R + L S+VG LA+GT +GNL +YNH TS+++PVLGKHT I +LA+
Sbjct: 96 MRDQMSFLLWSKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTKRITCGCWNAENLLAL 155
Query: 57 GTARGNLTVYNH 68
G +TV N
Sbjct: 156 GGEDKMITVSNQ 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 50 VGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTK 82
VG LA+GT +GNL +YNH TS+++PVLGKHTK
Sbjct: 108 VGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTK 140
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-------GQVLAIGTARGNLTVYNH 68
G+++A G+A + ++N T + + L +H++ I+ GQ+LA +A ++ +++
Sbjct: 1032 GKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDC 1091
Query: 69 MTSKRVPVLGKHT 81
T + V +L H+
Sbjct: 1092 CTGRCVGILRGHS 1104
>sp|Q873A1|SEC31_NEUCR Protein transport protein sec31 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=sec31 PE=3 SV=1
Length = 1256
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 17 QVLAIGTARGNLTVYN-HMTSK--RVPVLGKHT------NTIVGQVLAIGTARGNLTVYN 67
QVLA A+G L V++ + TS R+ H N V +LA G A G +TV++
Sbjct: 133 QVLATAGAKGELFVWDVNDTSAPFRLGTAAAHDIDCLAWNPKVANILATGGAGGFVTVWD 192
Query: 68 HMTSKRVPVLGKHTKS 83
T K L H K+
Sbjct: 193 LKTKKASLTLNNHRKA 208
>sp|A9KMP5|COBQ_CLOPH Cobyric acid synthase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=cobQ PE=3 SV=1
Length = 513
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 40 PVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKR 73
P+L K T + QV+ G RGN+T N+ K+
Sbjct: 76 PILLKPTTDVGSQVIVNGEVRGNMTASNYFKYKK 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,507,850
Number of Sequences: 539616
Number of extensions: 964158
Number of successful extensions: 2767
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2749
Number of HSP's gapped (non-prelim): 21
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)