RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12376
         (89 letters)



>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
           spliceosome, DNA damage, D repair, mRNA processing,
           nucleus; 2.60A {Saccharomyces cerevisiae}
          Length = 343

 Score = 29.7 bits (66), Expect = 0.087
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 8/81 (9%)

Query: 13  SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV--------GQVLAIGTARGNLT 64
               +       RG +   ++    +  V    ++             +LA+ +  G L 
Sbjct: 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195

Query: 65  VYNHMTSKRVPVLGKHTKSKP 85
           VYN  +  +        +   
Sbjct: 196 VYNLSSPDQASSRFPVDEEAK 216


>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding
           protein; 1.94A {Crocus vernus}
          Length = 111

 Score = 27.8 bits (62), Expect = 0.25
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 26  GNLTVYNHMTSKRVPVLGKHTNTIVGQVLAIGTARGNLTVYNH 68
           G L +++  ++  V V  +  NT+ G   A      ++T+Y  
Sbjct: 60  GQLEIHSANSNTPVWVYPRSVNTVRGNYAATLGPDQHVTIYGP 102


>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
           complex; 2.40A {Saccharomyces cerevisiae}
          Length = 902

 Score = 28.3 bits (62), Expect = 0.29
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 13  SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNT--------IVGQVLAIGTARGNLT 64
                +LAI T  G + +Y     ++V V+ K  +         + G  L +  A+  + 
Sbjct: 26  DFTQNLLAIATVTGEVHIYG---QQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVY 82

Query: 65  VYNHMTSKRVPVLGKHTK 82
           V +  + K +  +    K
Sbjct: 83  VLSLYSQKVLTTVFVPGK 100


>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
           D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
          Length = 401

 Score = 26.4 bits (59), Expect = 1.3
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 13  SQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV-----GQVLAIG 57
           S  G  L++G   G + +Y+  +  ++  +  H   +        VL+ G
Sbjct: 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSG 192


>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
           PSI-2, protein structure initiative, midwest CENT
           structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
           SP}
          Length = 414

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 38  RVPVLGKHTNTIVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKPST 87
            +P        I      IG   G L  +  +   RV + G+  K  P  
Sbjct: 247 NMPYSCMFPLGITA--AVIGITEGALACHIAVQKDRVAITGQKIKEDPYV 294


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,205,733
Number of extensions: 59434
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 7
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)