RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12376
         (89 letters)



>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 371

 Score = 32.1 bits (71), Expect = 0.005
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 5  YYIFLLQT------SQVGQVLAIGTARGNLTVYNHMTSKRVPV--LGKHTNTIV------ 50
          Y+ FL++       ++    +AI      + +Y    +K V V  L +H   +       
Sbjct: 2  YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 51 -GQVLAIGTARGNLTVYNHM 69
              +       N  V+   
Sbjct: 62 DSNRIVTCGTDRNAYVWTLK 81



 Score = 24.4 bits (51), Expect = 2.4
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 51 GQVLAIGTARGNLTVYNHMTSKRVPV--LGKHTKS 83
             +AI      + +Y    +K V V  L +H   
Sbjct: 19 RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ 53


>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
          (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 27.9 bits (60), Expect = 0.16
 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 37 KRVPVLGKHTNTIV-----GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS 83
          +R+    + +  +       Q +  G     + +++  T +   +L  HT S
Sbjct: 6  QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57



 Score = 26.0 bits (55), Expect = 0.79
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTIV 50
           Q +  G     + +++  T +   +L  HT +++
Sbjct: 25 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59


>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
          acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 317

 Score = 24.7 bits (52), Expect = 1.9
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 7  IFLLQTSQVGQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI 49
          +  +    V  V+   +    + V+++ T      L  HT+++
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62


>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 355

 Score = 24.9 bits (52), Expect = 2.0
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 6/45 (13%)

Query: 45 HTNTIV------GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTKS 83
          H  +++         +  G     + VY+ +  K +  L  H   
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG 55



 Score = 24.1 bits (50), Expect = 3.1
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 16 GQVLAIGTARGNLTVYNHMTSKRVPVLGKHTNTI 49
             +  G     + VY+ +  K +  L  H   +
Sbjct: 23 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV 56


>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
          pneumoniae, Ermam [TaxId: 1313]}
          Length = 245

 Score = 24.5 bits (52), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 18 VLAIGTARGNLTVYNHMTSKRV 39
          V  IGT +G+LT      SK+V
Sbjct: 33 VYEIGTGKGHLTTKLAKISKQV 54



 Score = 24.5 bits (52), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 53 VLAIGTARGNLTVYNHMTSKRV 74
          V  IGT +G+LT      SK+V
Sbjct: 33 VYEIGTGKGHLTTKLAKISKQV 54


>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
          KsgA {Escherichia coli [TaxId: 562]}
          Length = 252

 Score = 23.3 bits (49), Expect = 5.4
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 53 VLAIGTARGNLTVYNHMTSKRVPVLGKHTKSKP 85
          ++ IG     LT        ++ V+        
Sbjct: 25 MVEIGPGLAALTEPVGERLDQLTVIELDRDLAA 57



 Score = 23.3 bits (49), Expect = 5.5
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 18 VLAIGTARGNLTVYNHMTSKRVPVLGKHTN 47
          ++ IG     LT        ++ V+    +
Sbjct: 25 MVEIGPGLAALTEPVGERLDQLTVIELDRD 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 281,102
Number of extensions: 10149
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 15
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)