BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12377
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
          Length = 355

 Score = 30.4 bits (67), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 136 RSTIRDLVGRGWANGFPGRHIFRIDE-------NIMLGTCNKDVASGWLPKIHRRFGGRC 188
           R  +RD +   W +  P R +   DE       +I LGT  +   SG LP   +R GGR 
Sbjct: 178 RGELRDTI-LDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRL 236

Query: 189 LI 190
           +I
Sbjct: 237 VI 238


>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
 pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
 pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
 pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
 pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
 pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
          Length = 318

 Score = 30.4 bits (67), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 136 RSTIRDLVGRGWANGFPGRHIFRIDE-------NIMLGTCNKDVASGWLPKIHRRFGGRC 188
           R  +RD +   W +  P R +   DE       +I LGT  +   SG LP   +R GGR 
Sbjct: 178 RGELRDTI-LDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRL 236

Query: 189 LI 190
           +I
Sbjct: 237 VI 238


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,679,955
Number of Sequences: 62578
Number of extensions: 236839
Number of successful extensions: 377
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)