BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12377
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein CG31004 OS=Drosophila
melanogaster GN=CG31004 PE=1 SV=1
Length = 1431
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%)
Query: 69 HCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRSY 128
+ TNTFQ+VLATDEVY+Y IFNYA + W SHTEAGGDTT GEGGVPAYVGFNAGNGT++Y
Sbjct: 332 YTTNTFQMVLATDEVYTYIIFNYAVLNWLSHTEAGGDTTKGEGGVPAYVGFNAGNGTQAY 391
Query: 129 EYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLGTCNKDVASGWLP 178
EY PYSQ IRDL RGWANGFPGRHIFR+DE I++G+CNKD+ + LP
Sbjct: 392 EYNPYSQNMVIRDLANRGWANGFPGRHIFRVDEQILIGSCNKDIDAALLP 441
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 26 FINYISQCPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHCT 71
F + CPCTL+QA+ DKGRF PD +CD D NP+C ++GA HC
Sbjct: 677 FAADLPLCPCTLDQAVLDKGRFRPDRECDKDSNPSCLRHRGAIHCV 722
>sp|P34501|YMS5_CAEEL Uncharacterized protein K03H1.5 OS=Caenorhabditis elegans
GN=K03H1.5 PE=1 SV=2
Length = 1385
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 60/104 (57%), Gaps = 17/104 (16%)
Query: 72 NTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGG-DTTGGEGGVPAYVGFNAGNGTRSYEY 130
NTFQ+VLA+DE+ ++AIFNYA + WTS EAGG D GG+ A GFN GNGT Y
Sbjct: 363 NTFQVVLASDEIRTFAIFNYARLNWTSSNEAGGLDGFGGKQA--AMAGFNGGNGTGWYG- 419
Query: 131 YPYSQRSTIRDLVGRGWANGF------PGRHIFRIDENIMLGTC 168
PYS GR W G+ PGR I R+DE I+ C
Sbjct: 420 LPYSGE-------GRLWKLGYFSNVLTPGRWIHRVDEVIIPAGC 456
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 33 CPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVLATDE---VYSYAIF 89
CPC L QA+ D GRF+P DCD D + +C +NKGA+HC + Q + Y Y +
Sbjct: 712 CPCKLPQAMLDLGRFMPIMDCDKDGDTSCPFNKGAQHCIQSVQPTFSGSSQQCCYDYDGY 771
Query: 90 NYAEIQWTSHTEAGGD-TTGGEGGVPA 115
+ +T E GD TT + G PA
Sbjct: 772 ----LMFTDDWEPDGDYTTFFQPGTPA 794
>sp|Q9YH85|TECTA_CHICK Alpha-tectorin OS=Gallus gallus GN=TECTA PE=1 SV=1
Length = 2120
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 62 FYNKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNA 121
FY + NTFQ VL TD V S+AIFNY EI WT+ T +GGD G GGV A GFN
Sbjct: 154 FYGGSSTTPVNTFQAVLITDGVSSFAIFNYQEISWTTGTASGGDPLTGLGGVMAQAGFNG 213
Query: 122 GNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRID 160
GN + + P S+ I ++ N PGR F+ID
Sbjct: 214 GNISNFFS-IPGSRTPDIVNIEQTTNVN-IPGRWAFKID 250
>sp|Q70E20|SNED1_MOUSE Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus
musculus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 21 KVGDMFINYISQCPCTLEQALADKGRF---LPDYDCDIDLNPN----CFYNKGARHCTNT 73
+ GD++ + P L +A D R+ LPD+ F+ + NT
Sbjct: 112 RAGDVYYREATD-PAMLNRATEDIRRYFPELPDFSATWVFVATWYRVTFFGGSSSSPVNT 170
Query: 74 FQLVLATDEVYSYAIFNYAEIQWT--SHTEAGGDTTGGEGGVPAYVGFNAGNGTRSYEYY 131
FQ VL TD +S+ IFNY I WT +H +GGDT G GG+ A GFNAG+G R Y
Sbjct: 171 FQTVLITDGRFSFTIFNYESILWTTGTHASSGGDTD-GLGGIAAQAGFNAGDGHR-YFNI 228
Query: 132 PYSQRSTIRDLVGRGWANGFPGRHIFRIDE-NIMLGTC 168
P S+ + + + V G PGR FRID+ + +G C
Sbjct: 229 PGSRTADMAE-VETTTNVGVPGRWAFRIDDAQVRVGGC 265
>sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo
sapiens GN=SNED1 PE=2 SV=2
Length = 1413
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 21 KVGDMFINYISQCPCTLEQALADKGRFLPDYDCDIDLNPN----------CFYNKGARHC 70
+ GD++ + P L +A D + P+ +D N F+ +
Sbjct: 112 RAGDVYYREATD-PAMLRRATEDVRHYFPEL---LDFNATWVFVATWYRVTFFGGSSSSP 167
Query: 71 TNTFQLVLATDEVYSYAIFNYAEIQWT--SHTEAGGDTTGGEGGVPAYVGFNAGNGTRSY 128
NTFQ VL TD S+ IFNY I WT +H +GG+ T G GG+ A GFNAG+G R Y
Sbjct: 168 VNTFQTVLITDGKLSFTIFNYESIVWTTGTHASSGGNAT-GLGGIAAQAGFNAGDGQR-Y 225
Query: 129 EYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE-NIMLGTC--NKDVASGWLPKIHRRFG 185
P S+ + + + V G PGR FRID+ + +G C V P ++ G
Sbjct: 226 FSIPGSRTADMAE-VETTTNVGVPGRWAFRIDDAQVRVGGCGHTTSVCLALRPCLN---G 281
Query: 186 GRCL 189
G+C+
Sbjct: 282 GKCI 285
>sp|O08523|TECTA_MOUSE Alpha-tectorin OS=Mus musculus GN=Tecta PE=1 SV=2
Length = 2155
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 62 FYNKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNA 121
FY + NTFQ VL +D Y++ +FNY EI WT+ T +GGD G GGV A GFN
Sbjct: 154 FYGGSSTTPVNTFQAVLVSDGSYTFTLFNYYEINWTTGTASGGDPLTGLGGVMAQAGFNG 213
Query: 122 GNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRID 160
GN T + P S+ I ++ N PGR F++D
Sbjct: 214 GNLTNFFS-LPGSRTPEIVNIQETTNVN-VPGRWAFKVD 250
>sp|O75443|TECTA_HUMAN Alpha-tectorin OS=Homo sapiens GN=TECTA PE=1 SV=3
Length = 2155
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 62 FYNKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNA 121
FY + NTFQ VL +D Y++ +FNY EI WT+ T +GGD G GGV A GFN
Sbjct: 154 FYGGSSTTPVNTFQAVLVSDGSYTFTLFNYYEINWTTGTASGGDPLTGLGGVMAQAGFNG 213
Query: 122 GNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRID 160
GN T + P S+ I ++ N PGR F++D
Sbjct: 214 GNLTNFFS-LPGSRTPEIVNIQETTNVN-VPGRWAFKVD 250
>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus
norvegicus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 62 FYNKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWT--SHTEAGGDTTGGEGGVPAYVGF 119
F+ + NTFQ VL TD +S+ IFNY I WT +H +GGD G GG+ A GF
Sbjct: 159 FFGGSSSSPVNTFQTVLITDGRFSFTIFNYESILWTTGTHASSGGDAD-GLGGIAAQAGF 217
Query: 120 NAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE-NIMLGTC 168
NAG+G R Y P S+ + + + V G PGR FRID+ + +G C
Sbjct: 218 NAGDGHR-YFNIPGSRTADMAE-VETTTNVGVPGRWAFRIDDAQVRVGGC 265
>sp|Q9DBX3|SUSD2_MOUSE Sushi domain-containing protein 2 OS=Mus musculus GN=Susd2 PE=1
SV=1
Length = 820
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 26 FINYISQCPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQ 75
F+ + CPCTL QA AD GRF DY CDI+ C Y+ GA HC + Q
Sbjct: 303 FLTELPDCPCTLAQARADSGRFFTDYGCDIEHGSVCTYHPGAVHCVRSVQ 352
>sp|Q9UGT4|SUSD2_HUMAN Sushi domain-containing protein 2 OS=Homo sapiens GN=SUSD2 PE=1
SV=1
Length = 822
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 26 FINYISQCPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVL 78
F+ + CPCTL QA AD GRF DY CD++ C Y+ GA HC + Q L
Sbjct: 306 FLEELPDCPCTLTQARADSGRFFTDYGCDMEQGSVCTYHPGAVHCVRSVQASL 358
>sp|Q20762|YAO6_CAEEL Uncharacterized protein F54D1.6 OS=Caenorhabditis elegans
GN=F54D1.6 PE=1 SV=4
Length = 1423
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 31 SQCPCTLEQALADKGRFLPDYDCDIDL-NPNCFYNKGARHCTNTFQLVLAT 80
S CPC QA+AD GRF+P C + C + G+R+C + Q V+ T
Sbjct: 667 SSCPCIERQAIADIGRFMPHPRCSQAFRDITCTTSIGSRNCYMSSQNVMTT 717
>sp|P14543|NID1_HUMAN Nidogen-1 OS=Homo sapiens GN=NID1 PE=1 SV=3
Length = 1247
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 64 NKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGN 123
KG R NTFQ VLA+ + SYAIF Y E HT + VPA V F+ G+
Sbjct: 172 QKGKR---NTFQAVLASSDSSSYAIFLYPEDGLQFHTTF---SKKENNQVPAVVAFSQGS 225
>sp|P41950|YLK2_CAEEL EGF-like domain-containing protein D1044.2 OS=Caenorhabditis
elegans GN=D1044.2 PE=4 SV=2
Length = 1090
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 71 TNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRSYEY 130
TNTFQ + ++A F Y+ I WT EA GFNAG+ T ++
Sbjct: 228 TNTFQAAIFITANGTFANFIYSNIGWTQGAEA---------------GFNAGDATNHFK- 271
Query: 131 YPYSQRSTIRDLVGRGWANGFPGRHIFRIDE--------NIMLGTCNKDVASG-WLP 178
P S I L G G PG +F + E I TC+++ ++G W P
Sbjct: 272 LPTSGTPNIMYLEEYG-NTGIPGEWMFELSELRVISCKSGIKGDTCDQECSNGEWGP 327
>sp|P10493|NID1_MOUSE Nidogen-1 OS=Mus musculus GN=Nid1 PE=1 SV=2
Length = 1245
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 NTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAG 122
NTFQ VLA+ SYAIF Y E T + E VPA VGF+ G
Sbjct: 177 NTFQAVLASSNSSSYAIFLYPEDGLQFFTTF---SKKDESQVPAVVGFSKG 224
>sp|Q99102|MUC4_HUMAN Mucin-4 OS=Homo sapiens GN=MUC4 PE=1 SV=4
Length = 2169
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 71 TNTFQLVLATDEVYSYAIFNYAE--IQWTSHTEAGGDTTGGEGGVPAYVGFNAGNG 124
+NT+Q +L+TD SYA+F Y +QW +G P +GF++G+G
Sbjct: 1224 SNTYQAILSTDGSRSYALFLYQSGGMQWDVAQRSGN---------PVLMGFSSGDG 1270
>sp|Q5SIW6|ACSA_THET8 Acetyl-coenzyme A synthetase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=acsA PE=3 SV=1
Length = 648
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 133 YSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLGTCNKDV-ASGWLPKIHRRFGGRCLI 190
Y+ + IR + W G+PG+H R+D +LGT + + WL H GRC I
Sbjct: 357 YTAPTAIRSFMK--WGEGWPGKH--RLDSLRLLGTVGEPINPEAWLWYYHVIGKGRCPI 411
>sp|Q72J95|ACSA_THET2 Acetyl-coenzyme A synthetase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=acsA PE=3 SV=1
Length = 648
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 133 YSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLGTCNKDV-ASGWLPKIHRRFGGRCLI 190
Y+ + IR + W G+PG+H R+D +LGT + + WL H GRC I
Sbjct: 357 YTAPTAIRSFMK--WGEGWPGKH--RLDSLRLLGTVGEPINPEAWLWYYHVIGKGRCPI 411
>sp|P08460|NID1_RAT Nidogen-1 (Fragment) OS=Rattus norvegicus GN=Nid1 PE=2 SV=2
Length = 324
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 NTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAG 122
NTFQ VLA+ SYAIF Y + T + E VPA VGF+ G
Sbjct: 87 NTFQAVLASSNSSSYAIFLYPDDGLQFFTTF---SKKDENQVPAVVGFSKG 134
>sp|A1S605|RMF_SHEAM Ribosome modulation factor OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=rmf PE=3 SV=1
Length = 58
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 118 GFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGR 154
GF AG G RS E PYS + +G GW G GR
Sbjct: 16 GFQAGVGGRSKEMCPYSNLDSRSQWLG-GWREGVDGR 51
>sp|Q21874|YF1M_CAEEL Uncharacterized protein R09E10.5 OS=Caenorhabditis elegans
GN=R09E10.5 PE=1 SV=1
Length = 1459
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 31 SQCPCTLEQALADKGRFLPDYDC 53
+ CPC QAL D GRF+P C
Sbjct: 699 TSCPCIETQALLDLGRFMPHPRC 721
>sp|B5DFC9|NID2_RAT Nidogen-2 OS=Rattus norvegicus GN=Nid2 PE=2 SV=1
Length = 1396
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 72 NTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNG---TRSY 128
NTFQ VLA+DE +YA+F Y ++ + +PA VGF G R
Sbjct: 181 NTFQAVLASDESDTYALFLYPANGLQFFGTRPKESYNVQLQLPARVGFCRGEADDLKREA 240
Query: 129 EYYPYSQ-RSTIRDLVGRGWANGFPGRHIFRIDENIML 165
Y+ + ++++L G PG F I + L
Sbjct: 241 LYFSLTNTEQSVKNLYQLSNL-GIPGAWAFHIGSRLAL 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,019,073
Number of Sequences: 539616
Number of extensions: 3817271
Number of successful extensions: 6434
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6409
Number of HSP's gapped (non-prelim): 26
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)