Query psy12377
Match_columns 194
No_of_seqs 117 out of 369
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:35:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2atm_A Hyaluronoglucosaminidas 33.2 27 0.00093 30.4 3.0 27 36-62 83-113 (331)
2 1fcq_A Hyaluronoglucosaminidas 32.0 29 0.00099 30.4 3.0 26 37-62 88-117 (350)
3 2pe4_A Hyaluronidase-1; hyalur 27.8 34 0.0012 30.7 2.8 27 36-62 86-116 (424)
4 1igd_A Protein G; immunoglobul 20.4 29 0.00098 22.7 0.6 18 138-158 34-51 (61)
5 1v90_A Delta-paluit1, delta-pa 15.8 63 0.0022 19.2 1.3 11 9-19 6-16 (38)
6 1pgx_A Protein G; immunoglobul 14.8 45 0.0015 23.0 0.5 18 139-159 43-60 (83)
7 1eit_A MU-agatoxin-I, MU-AGA-I 14.2 70 0.0024 18.9 1.2 10 9-18 6-15 (37)
8 2oqj_C Peptide 2G12.1 (ACPPSHV 13.2 81 0.0028 16.8 1.2 11 180-190 7-17 (26)
9 2rpv_A Immunoglobulin G-bindin 11.5 48 0.0016 22.4 -0.1 17 139-158 49-65 (75)
10 2cve_A Hypothetical protein TT 10.7 1.2E+02 0.0042 24.0 2.1 34 154-190 49-100 (191)
No 1
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=33.17 E-value=27 Score=30.36 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCCCCcc----eEecccccc
Q psy12377 36 TLEQALADKGRFLPDYDC----DIDLNPNCF 62 (194)
Q Consensus 36 vL~rAt~dI~~~fp~~~f----vvTW~~V~~ 62 (194)
=|++|.+||.++.|+.+| |+.||.=.|
T Consensus 83 HL~k~~~dI~~~ip~~~f~GLaVIDwE~WRP 113 (331)
T 2atm_A 83 HLQKFIENLDKIYPNRNFSGIGVIDFERWRP 113 (331)
T ss_dssp HHHHHHHHHHHHCCCTTCCSEEEEECCSCCS
T ss_pred HHHHHHHHHHHhCCCCCCCeeEEEEccccCc
Confidence 389999999999999887 999998655
No 2
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=32.04 E-value=29 Score=30.42 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCCCcc----eEecccccc
Q psy12377 37 LEQALADKGRFLPDYDC----DIDLNPNCF 62 (194)
Q Consensus 37 L~rAt~dI~~~fp~~~f----vvTW~~V~~ 62 (194)
|++|.+||.++.|+.+| |+.||.=.|
T Consensus 88 L~k~~~dI~~~IP~~~f~GLaVIDwE~WRP 117 (350)
T 1fcq_A 88 LQVFRDHLINQIPDKSFPGVGVIDFESWRP 117 (350)
T ss_dssp HHHHHHHHHHHCCCTTCCSEEEEECCSCCS
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEccccCc
Confidence 89999999999999887 999998655
No 3
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=27.75 E-value=34 Score=30.75 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcCCCCcc----eEecccccc
Q psy12377 36 TLEQALADKGRFLPDYDC----DIDLNPNCF 62 (194)
Q Consensus 36 vL~rAt~dI~~~fp~~~f----vvTW~~V~~ 62 (194)
=|++|.+||.++.|+.+| |+.||.=.|
T Consensus 86 HL~k~~~dI~~~IP~~~f~GLaVIDwE~WRP 116 (424)
T 2pe4_A 86 HLARTFQDILAAIPAPDFSGLAVIDWEAWRP 116 (424)
T ss_dssp HHHHHHHHHHHHCCCTTCCSEEEECCCSSCS
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEcccccc
Confidence 389999999999999887 999998654
No 4
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=20.36 E-value=29 Score=22.72 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=12.5
Q ss_pred hhhhhhccCCCCCCCceEEEE
Q psy12377 138 TIRDLVGRGWANGFPGRHIFR 158 (194)
Q Consensus 138 ~v~~l~~~SN~~g~~G~W~fr 158 (194)
..+.+++ +.|++|.|.|-
T Consensus 34 ~Fr~yaN---~Ngvdgew~yd 51 (61)
T 1igd_A 34 AFKQYAN---DNGVDGVWTYD 51 (61)
T ss_dssp HHHHHHH---HTTCCCEEEEE
T ss_pred HHHHHhh---cCCCCceEeec
Confidence 3445665 35789999985
No 5
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=15.81 E-value=63 Score=19.22 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=8.8
Q ss_pred cccCCCCCCCC
Q psy12377 9 NNTCSSTMLPR 19 (194)
Q Consensus 9 ~~~~~~w~d~~ 19 (194)
++.|+||....
T Consensus 6 ~~~CadW~gp~ 16 (38)
T 1v90_A 6 GEKCADWSGPS 16 (38)
T ss_dssp SSCCCTTTCSC
T ss_pred cCeeccccCCc
Confidence 57899998874
No 6
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=14.78 E-value=45 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=12.6
Q ss_pred hhhhhccCCCCCCCceEEEEe
Q psy12377 139 IRDLVGRGWANGFPGRHIFRI 159 (194)
Q Consensus 139 v~~l~~~SN~~g~~G~W~fri 159 (194)
.+.+++ +.|++|.|.|--
T Consensus 43 Fr~YaN---~NgvdgeWsYD~ 60 (83)
T 1pgx_A 43 FKQYAN---DNGVDGVWTYDD 60 (83)
T ss_dssp HHHHHH---HTTCCEEEEEET
T ss_pred HHHHhh---cCCCCceEeecc
Confidence 445565 357899999953
No 7
>1eit_A MU-agatoxin-I, MU-AGA-I; neurotoxin, excitatory insect toxin; NMR {Agelenopsis aperta} SCOP: g.3.6.2
Probab=14.17 E-value=70 Score=18.92 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=8.2
Q ss_pred cccCCCCCCC
Q psy12377 9 NNTCSSTMLP 18 (194)
Q Consensus 9 ~~~~~~w~d~ 18 (194)
++.|+||...
T Consensus 6 ~~~CadW~gp 15 (37)
T 1eit_A 6 NGHCRDWYDE 15 (37)
T ss_dssp TCCCCSSSSC
T ss_pred cCeecccccC
Confidence 5789999876
No 8
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=13.17 E-value=81 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=9.1
Q ss_pred EEecCCceeEe
Q psy12377 180 IHRRFGGRCLI 190 (194)
Q Consensus 180 ~~~~~~g~~~~ 190 (194)
++-|.+|+||.
T Consensus 7 vldmrsgtcla 17 (26)
T 2oqj_C 7 VLDMRSGTCLA 17 (26)
T ss_pred eeeccCCceEe
Confidence 56789999985
No 9
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=11.46 E-value=48 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=12.0
Q ss_pred hhhhhccCCCCCCCceEEEE
Q psy12377 139 IRDLVGRGWANGFPGRHIFR 158 (194)
Q Consensus 139 v~~l~~~SN~~g~~G~W~fr 158 (194)
.+.+++. .|++|.|.|-
T Consensus 49 Fr~YaN~---NgvdgeWsYD 65 (75)
T 2rpv_A 49 FKQYAND---NGVDGEWTYD 65 (75)
T ss_dssp HHHHHHH---HTCCSEEEEE
T ss_pred HHHHhhc---CCCCceEeec
Confidence 4456653 4789999985
No 10
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=10.69 E-value=1.2e+02 Score=24.01 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=20.6
Q ss_pred eEEEEecCceecCCccCCCCC------------------CccceEEecCCceeEe
Q psy12377 154 RHIFRIDENIMLGTCNKDVAS------------------GWLPKIHRRFGGRCLI 190 (194)
Q Consensus 154 ~W~frid~~~~~~~c~~~~~~------------------~~~~~~~~~~~g~~~~ 190 (194)
-|+||++.. ..|+-+.|+ +.+-+|.+=.||.+||
T Consensus 49 ~~Ay~~g~~---~~~~DDGEp~GTAG~piL~~L~~~~l~nv~vVVtRyfGGi~LG 100 (191)
T 2cve_A 49 GHAYKIGLL---YRFSDDGEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLG 100 (191)
T ss_dssp EEEEEETTE---EEEECTTSSTTSSHHHHHHHHHHTTBCSEEEEEEEECCSSCCH
T ss_pred EEEEEEecc---cccCCCCCcCCcChHHHHHHHHHcCCCcEEEEEEEEeCCcccC
Confidence 699999752 345444443 2334444448888886
Done!