Query psy12377
Match_columns 194
No_of_seqs 117 out of 369
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 17:35:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fcqa_ c.1.8.9 (A:) Bee venom 35.7 11 0.0008 30.6 3.0 26 37-62 79-108 (321)
2 d1jb0j_ f.23.18.1 (J:) Subunit 15.4 26 0.0019 19.8 1.0 11 41-51 26-36 (41)
3 d3buxb3 d.93.1.1 (B:264-351) C 11.8 52 0.0038 21.2 1.8 12 149-160 22-33 (88)
4 d1ex4a1 b.34.7.1 (A:223-270) D 11.1 33 0.0024 19.9 0.6 9 25-34 3-11 (48)
5 d1ji1a2 b.71.1.1 (A:555-637) M 10.5 1.7E+02 0.013 17.4 6.5 42 73-133 1-42 (83)
6 d1l1qa_ c.61.1.1 (A:) Adenine 9.2 1.2E+02 0.0089 21.4 3.5 38 21-58 19-60 (181)
7 d2fbjh2 b.1.1.2 (H:119-220) Im 8.3 1.3E+02 0.0092 18.8 2.9 50 45-99 29-79 (102)
8 d1c5ch2 b.1.1.2 (H:114-230) Im 8.2 70 0.0051 20.2 1.5 36 45-86 30-65 (103)
9 d1c6vx_ b.34.7.1 (X:) DNA-bind 7.4 32 0.0023 20.5 -0.6 10 24-34 9-18 (55)
10 d1mhxa_ d.15.7.1 (A:) Immunogl 7.2 65 0.0048 19.6 0.8 17 139-158 39-55 (65)
No 1
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=35.72 E-value=11 Score=30.64 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCCcc----eEecccccc
Q psy12377 37 LEQALADKGRFLPDYDC----DIDLNPNCF 62 (194)
Q Consensus 37 L~rAt~dI~~~fp~~~f----vvTW~~V~~ 62 (194)
|++|.+||.++.|+.+| |+.||.=.|
T Consensus 79 L~k~~~dI~~~ip~~~f~GLaVIDwE~WRP 108 (321)
T d1fcqa_ 79 LQVFRDHLINQIPDKSFPGVGVIDFESWRP 108 (321)
T ss_dssp HHHHHHHHHHHCCCTTCCSEEEEECCSCCS
T ss_pred HHHHHHHHHHhCCCCCCCccEEEecccccc
Confidence 88999999999999887 999997654
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=15.39 E-value=26 Score=19.76 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=9.1
Q ss_pred HHHHhhcCCCC
Q psy12377 41 LADKGRFLPDY 51 (194)
Q Consensus 41 t~dI~~~fp~~ 51 (194)
.-+++|+|||.
T Consensus 26 lIEiNRFfPD~ 36 (41)
T d1jb0j_ 26 LIEFNRFYPDL 36 (41)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHhhCchh
Confidence 35789999996
No 3
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.84 E-value=52 Score=21.20 Aligned_cols=12 Identities=42% Similarity=0.647 Sum_probs=10.2
Q ss_pred CCCCceEEEEec
Q psy12377 149 NGFPGRHIFRID 160 (194)
Q Consensus 149 ~g~~G~W~frid 160 (194)
...||.++||+.
T Consensus 22 ~~kPGSYiFRlS 33 (88)
T d3buxb3 22 IHKPGSYIFRLS 33 (88)
T ss_dssp TTSTTEEEEEEC
T ss_pred hcCCCceEEeec
Confidence 458999999984
No 4
>d1ex4a1 b.34.7.1 (A:223-270) DNA-binding domain of retroviral integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=11.10 E-value=33 Score=19.93 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=4.6
Q ss_pred EEEEeecCCh
Q psy12377 25 MFINYISQCP 34 (194)
Q Consensus 25 VyYre~~~~p 34 (194)
||||+ ..||
T Consensus 3 VYyr~-~~dp 11 (48)
T d1ex4a1 3 VYYRD-SRNS 11 (48)
T ss_dssp EEECC-SSCC
T ss_pred EEEec-CCCc
Confidence 56665 4433
No 5
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Probab=10.48 E-value=1.7e+02 Score=17.38 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=28.9
Q ss_pred eeeEEEEecCCceEEEEEcCccceecccccCCCCCCCCCCcceEEEEeecCCceeEEEecC
Q psy12377 73 TFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRSYEYYPY 133 (194)
Q Consensus 73 TFQaVLitdg~~SfalF~Y~~iqW~~~~~~~~~~~~g~~g~~A~aGf~~Gdg~~~~~~lp~ 133 (194)
|||.+++.|+..-|+-..+.+ +-.+.+.+|.++...-.. +|.
T Consensus 1 sf~~l~ad~~~~v~ay~R~~~------------------~e~vlV~~N~s~~~~~v~-l~~ 42 (83)
T d1ji1a2 1 SFMTLITDDTNKIYSYGRFDN------------------VNRIAVVLNNDSVSHTVN-VPV 42 (83)
T ss_dssp EEEEEEEETTTTEEEEEEECS------------------SCEEEEEEECSSSCEEEE-ECG
T ss_pred CcEEEEecCCCCEEEEEEEcC------------------CcEEEEEEeCCCCCEEEE-ecc
Confidence 799999999988877765421 124788888877654454 553
No 6
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId: 5741]}
Probab=9.21 E-value=1.2e+02 Score=21.43 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.9
Q ss_pred ccccEEEEe--ecCChhHHHHHHHHHhhcCCCCcc--eEecc
Q psy12377 21 KVGDMFINY--ISQCPCTLEQALADKGRFLPDYDC--DIDLN 58 (194)
Q Consensus 21 ~~G~VyYre--~~~~p~vL~rAt~dI~~~fp~~~f--vvTW~ 58 (194)
+.|..||.. +..||.+++++.+.+.+.+++..+ +++=+
T Consensus 19 ~~Gi~F~Di~~il~dp~~~~~~~~~la~~~~~~~~d~Ivgie 60 (181)
T d1l1qa_ 19 TKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIE 60 (181)
T ss_dssp STTCCEEECHHHHTCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCccEEechhhhCCHHHHHHHHHHHHHHHhccCCCEEEeec
Confidence 468788876 247999999999999988877533 55444
No 7
>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.33 E-value=1.3e+02 Score=18.80 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=27.4
Q ss_pred hhcCCCCcceEeccccccCCCCCCccCceeeEEEEecCCceE-EEEEcCccceecc
Q psy12377 45 GRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVLATDEVYSY-AIFNYAEIQWTSH 99 (194)
Q Consensus 45 ~~~fp~~~fvvTW~~V~~y~~~~~~~~NTFQaVLitdg~~Sf-alF~Y~~iqW~~~ 99 (194)
..|+|.-...++|.+-+ ......++..++-.||..+. ..+....-+|..+
T Consensus 29 ~gF~P~~~i~v~W~~~~-----~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~ 79 (102)
T d2fbjh2 29 HDYFPSGTMNVTWGKSG-----KDITTVNFPPALASGGRYTMSNQLTLPAVECPEG 79 (102)
T ss_dssp EEEBSCCCEEEEESCCC-----SSCEEEECCCEECSSSCEEEEEEEEECGGGSCTT
T ss_pred EcccCCCcEEEEEccCC-----CcCceeEeeeEecCCCCEEEEEEEEEeHHHccCC
Confidence 34566556788896422 12234566777767665443 3344455567654
No 8
>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.21 E-value=70 Score=20.16 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=21.6
Q ss_pred hhcCCCCcceEeccccccCCCCCCccCceeeEEEEecCCceE
Q psy12377 45 GRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVLATDEVYSY 86 (194)
Q Consensus 45 ~~~fp~~~fvvTW~~V~~y~~~~~~~~NTFQaVLitdg~~Sf 86 (194)
..|+|+ +..|+|..-+ ......+++.+.-.||..+.
T Consensus 30 ~~f~P~-~i~v~W~~~~-----~~~~~~t~~~~~~~~gtys~ 65 (103)
T d1c5ch2 30 KDYFPE-PVTVSWNSGA-----LTSGVHTFPAVLQSSGLYSL 65 (103)
T ss_dssp EEEBSS-CCEEEEGGGT-----BCTTEEECCCEECTTSCEEE
T ss_pred EeEeCC-CeEEEECcCC-----CCCCEEECCCeECCCCCEEE
Confidence 356664 5689995322 22356788888766664433
No 9
>d1c6vx_ b.34.7.1 (X:) DNA-binding domain of retroviral integrase {Simian immunodeficiency virus [TaxId: 11723]}
Probab=7.43 E-value=32 Score=20.54 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=6.6
Q ss_pred cEEEEeecCCh
Q psy12377 24 DMFINYISQCP 34 (194)
Q Consensus 24 ~VyYre~~~~p 34 (194)
+||||+ ..||
T Consensus 9 rVYYR~-~~dp 18 (55)
T d1c6vx_ 9 RVYYRE-GRDQ 18 (55)
T ss_dssp EECCCC-SSCS
T ss_pred EEEEEc-CCCC
Confidence 577777 5555
No 10
>d1mhxa_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different constituent domains {Streptococcus sp., group G [TaxId: 1306]}
Probab=7.23 E-value=65 Score=19.58 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=11.8
Q ss_pred hhhhhccCCCCCCCceEEEE
Q psy12377 139 IRDLVGRGWANGFPGRHIFR 158 (194)
Q Consensus 139 v~~l~~~SN~~g~~G~W~fr 158 (194)
++.+++ ..|+.|.|.|.
T Consensus 39 fk~yan---~ngVdG~Wtyd 55 (65)
T d1mhxa_ 39 FKQYAN---DNGVDGEWTYD 55 (65)
T ss_dssp HHHHHH---HTTCCSEEEEE
T ss_pred HHHHhc---cCCCCceEEec
Confidence 344555 35799999985
Done!