RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12377
         (194 letters)



>gnl|CDD|147987 pfam06119, NIDO, Nidogen-like.  This is a nidogen-like domain
           (NIDO) domain and is an extracellular domain found in
           nidogen and hypothetical proteins of unknown function.
          Length = 90

 Score =  103 bits (259), Expect = 3e-29
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 71  TNTFQLVLATDEVYSYAIFNYAE--IQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRSY 128
           TNTFQ VLATD   S+AIF Y E  IQWT+ T   GD   G GGVPA  GF+AG+G R +
Sbjct: 1   TNTFQAVLATDGSDSFAIFLYPEDGIQWTTGTA--GDGLNGLGGVPAQAGFSAGDGNRFF 58

Query: 129 EYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE 161
              P S+  ++R+L       G PGR IFR+  
Sbjct: 59  T-LPGSRTESVRNLAQS-SNVGVPGRWIFRVGG 89


>gnl|CDD|214712 smart00539, NIDO, Extracellular domain of unknown function in
           nidogen (entactin) and hypothetical proteins. 
          Length = 152

 Score = 93.6 bits (233), Expect = 1e-24
 Identities = 38/101 (37%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 62  FYNKGARHCTNTFQLVLATDEVYSYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNA 121
            Y   +   TNTFQ VLATD   +YAIF Y  + WTS T AGGD      GV A  GFN 
Sbjct: 57  AYGSQSSDGTNTFQAVLATDGSRTYAIFLYPSLGWTSDTTAGGDD-----GVRARAGFNG 111

Query: 122 GNGT------RSYEYYPYSQRSTIRDLVGRGWANGFPGRHI 156
           G+GT       S E    +        +   W     G  I
Sbjct: 112 GDGTFSYTLPASGEENIKNLAEGSNVGIPGRWMFRVDGAEI 152


>gnl|CDD|146428 pfam03782, AMOP, AMOP domain.  This domain may have a role in
          cell adhesion. It is called the AMOP domain after
          Adhesion associated domain in MUC4 and Other Proteins.
          This domain is extracellular and contains a number of
          cysteines that probably form disulphide bridges.
          Length = 138

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 33 CPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHC 70
          CPC+L QA+AD GRF PD DC       C Y+ GARHC
Sbjct: 26 CPCSLPQAVADLGRFFPDRDCSGPKERLCIYHPGARHC 63


>gnl|CDD|128962 smart00723, AMOP, Adhesion-associated domain present in MUC4 and
           other proteins. 
          Length = 154

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 33  CPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVLAT--DEVYSYAIFN 90
           CPC+L QA+AD GRF PD  CD D    C Y+ GARHC  + Q V +T   +V  Y    
Sbjct: 32  CPCSLPQAVADSGRFRPDDACDPDERILCTYHPGARHCIRSMQSVESTGAGQVCCYD--A 89

Query: 91  YAEIQWTSHTEAGGDTTGGEGGVPAYVG 118
           + ++  T          G   G P Y+G
Sbjct: 90  WGQLMTTDDQPVIKPRRGHGAGTPPYIG 117


>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
          Length = 294

 Score = 27.7 bits (61), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 9   NNTCSSTMLPRIKVGDMFINYISQCPCTLEQALAD 43
           N  CSST+L  + + D+F+N  S  P      +AD
Sbjct: 70  NKLCSSTLLSTL-LYDLFLNTFSSDPSLRAATVAD 103


>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase. 
          Length = 302

 Score = 27.8 bits (63), Expect = 3.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 120 NAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 151
            A  G   ++ Y    R    DL+ R  A G+
Sbjct: 106 AAAGGPLWFQLYVPKDRELTEDLLERAEAAGY 137


>gnl|CDD|235605 PRK05782, PRK05782, bifunctional sirohydrochlorin cobalt
           chelatase/precorrin-8X methylmutase; Validated.
          Length = 335

 Score = 27.5 bits (61), Expect = 4.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 18/60 (30%)

Query: 112 GVPAYVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGW-----ANGF--PGRHIFRIDENIM 164
           GVP Y+ +N        E+   + RS + +++  G+     A  F   G H+FR   +IM
Sbjct: 37  GVPIYLTYN--------EFAEPNWRSLLNEIIKEGYRRVIIALAFLGRGNHVFR---DIM 85


>gnl|CDD|183218 PRK11590, PRK11590, hypothetical protein; Provisional.
          Length = 211

 Score = 26.2 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 12/28 (42%)

Query: 174 SGWLPK-------IHRRFGG-----RCL 189
           + WLP+       + RR+GG     RCL
Sbjct: 133 TPWLPRVNLIASQMQRRYGGWVLTLRCL 160


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,984,574
Number of extensions: 912399
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 12
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)