RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12377
(194 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 8 TNNTCSSTMLPRIKVGDMFINYIS-QCPCTLEQALADKGRFLPDYDCDIDLNPNCFYNKG 66
T S ++L ++ + YI P E+ + FLP N +K
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKI------EENLICSK- 563
Query: 67 ARHCTNTFQLVLATDEVYSYAIFNYAEIQ 95
T+ ++ L ++ AIF A Q
Sbjct: 564 ---YTDLLRIALMAED---EAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.43
Identities = 30/168 (17%), Positives = 47/168 (27%), Gaps = 53/168 (31%)
Query: 22 VGDMFINYISQCPCTLEQALADKGRFLPDYDCDI-------DLNPNCFYNKGARHCTNTF 74
VGD I + ++ L + D + +I P+ Y +
Sbjct: 184 VGD-LIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDY---LLSIPISC 238
Query: 75 ------QLVLATDEVYSYAIFNYAEIQWTSHTEA----GGDTTGGEGGVPAYV------- 117
QL Y + A++ + E G T +G V A
Sbjct: 239 PLIGVIQLA-------HYVVT--AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 118 -GF--NAGN--------GTRSYEYYPYSQR--STIRDLVGRGWANGFP 152
F + G R YE YP + S + D + G P
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVP 335
Score = 26.2 bits (57), Expect = 9.1
Identities = 36/168 (21%), Positives = 51/168 (30%), Gaps = 55/168 (32%)
Query: 33 CPCTLEQA--------LADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQLVLATDEVY 84
P L+Q+ L RFLP + P F H LV A+D +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLP-----VAS-P--F------HSH---LLVPASDLIN 440
Query: 85 SYAIFNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRSYEYYPYSQRSTIRDLVG 144
+ N + + + + +P Y F+ + R S I D +
Sbjct: 441 KDLVKN--NVSFNAK----------DIQIPVYDTFDGSD-LRVLS---GSISERIVDCII 484
Query: 145 RG---W--ANGFPGRHIFRIDENIMLGTCNKDVASGWLPKIHRRFGGR 187
R W F HI +D G ASG HR G
Sbjct: 485 RLPVKWETTTQFKATHI--LD----FGP---GGASGLGVLTHRNKDGT 523
>1y12_A Hypothetical protein PA0085; hemolysin-corregulation, structural
PSI, protein structure initiative, midwest center for
struc genomics; 1.95A {Pseudomonas aeruginosa PAO1}
SCOP: b.157.1.1
Length = 165
Score = 29.5 bits (66), Expect = 0.47
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 89 FNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRS 127
N+A++Q + G + G P G+N ++
Sbjct: 130 LNFAQVQVD-YQPQ--KADGAKDGGPVKYGWNIRQNVQA 165
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda}
Length = 163
Score = 29.5 bits (66), Expect = 0.48
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 89 FNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFN 120
F Y E+ W + D G GG G++
Sbjct: 128 FAYKEVTWE-YVPQ--DQNGKAGGKIGPEGWS 156
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 27.8 bits (62), Expect = 2.4
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 24/72 (33%)
Query: 13 SSTMLPRIKVGDMFINYISQCPCTLEQA-------------LADKGRFLPDYDCDI---- 55
T+L ++ + ++ A L KG LP D D+
Sbjct: 307 FETLLETVQ------VLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMT 360
Query: 56 -DLNPNCFYNKG 66
+L Y +G
Sbjct: 361 PELRIEQVYARG 372
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A
{Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Length = 583
Score = 27.5 bits (60), Expect = 3.4
Identities = 8/40 (20%), Positives = 10/40 (25%), Gaps = 5/40 (12%)
Query: 104 GDTTGGEGGVPAYVGFNAGNGTRSYE-----YYPYSQRST 138
G T G GG V F G ++
Sbjct: 486 GTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFI 525
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family
protein, structural genomics; HET: MSE; 1.45A
{Rhodospirillum rubrum atcc 11170}
Length = 164
Score = 26.5 bits (58), Expect = 3.9
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 2/19 (10%)
Query: 32 QCPCTLEQALADKGRFLPD 50
Q P + L + F D
Sbjct: 138 QAPLPADHFLDED--FDYD 154
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 26.6 bits (59), Expect = 5.4
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 40 ALADKGRF---LPDYDCDIDLNPNCFYNKGARHCT--------NTFQLVLATDEVYSYAI 88
ADK + L + D + +N G + F + D+ + A
Sbjct: 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74
Query: 89 FN 90
F
Sbjct: 75 FQ 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.451
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,159,877
Number of extensions: 186713
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 10
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)