RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12377
         (194 letters)



>d1y12a1 b.157.1.1 (A:2-162) Hemolysin-corregulated protein 1, Hcp1
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 161

 Score = 28.2 bits (63), Expect = 0.41
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 89  FNYAEIQWTSHTEAGGDTTGGEGGVPAYVGFNAGNGTRS 127
            N+A++Q   +        G + G P   G+N     ++
Sbjct: 126 LNFAQVQVD-YQPQ--KADGAKDGGPVKYGWNIRQNVQA 161


>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 142

 Score = 25.5 bits (56), Expect = 2.8
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 19  RIKVGDMFINYISQCPCTLE--QALADKGRFLPDYDCDIDLNPNCFYNKGARHCTNTFQL 76
            + V D+F+ YI +   TLE  QA + +   +    C +  +       G   CT +  L
Sbjct: 67  LVHVNDLFLQYIQKNTITLEVHQAYSTEYETIA--ACQLKFHE-ILEKSGRIFCTAS--L 121

Query: 77  VLATDEVYSYAIFNY 91
           +    ++ ++    Y
Sbjct: 122 IGTKGDIPNFGTVEY 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,491
Number of extensions: 37364
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)