BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12378
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IS7|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Dichlorophenylacetic Acid
Length = 315
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 120 PLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVGTVVDRNR 179
PL P++ W K DPS + RI +I D+ T V RF + RN
Sbjct: 211 PLGSPDRPWAKPEDPSLL----EDPRIKAIAAKH-DKTTAQVLIRFPM--------QRNL 257
Query: 180 AI---CVQPFLMAEGYVIFDIKIG 200
+ V P +AE + +FD ++
Sbjct: 258 VVIPKSVTPERIAENFKVFDFELS 281
>pdb|1XGD|A Chain A, Apo R268a Human Aldose Reductase
Length = 315
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 120 PLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVGTVVDRNR 179
PL P++ W K DPS + RI +I ++ T V RF + RN
Sbjct: 211 PLGSPDRPWAKPEDPSLL----EDPRIKAIAAKH-NKTTAQVLIRFPM--------QRNL 257
Query: 180 AI---CVQPFLMAEGYVIFDIKIG 200
+ V P +AE + +FD ++
Sbjct: 258 VVIPKSVTPEAIAENFKVFDFELS 281
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 161 VYFRFDIVDVVGTVVDRNR---AICVQPFLMAEGYVI-----------FDIKIGEGQYNW 206
+Y RF +++ + R R + FLMA G ++ D K+ EG + +
Sbjct: 54 LYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVY 113
Query: 207 KGKYFVETPATATERI 222
KG + P+T TE +
Sbjct: 114 KGGKIYKVPSTETEAL 129
>pdb|1AH0|A Chain A, Pig Aldose Reductase Complexed With Sorbinil
Length = 316
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 120 PLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVGTVVDRNR 179
PL P++ W K DPS + RI +I ++ T V RF + RN
Sbjct: 212 PLGSPDRPWAKPEDPSLL----EDPRIKAI-AAKYNKTTAQVLIRFPM--------QRNL 258
Query: 180 AI---CVQPFLMAEGYVIFDIKIGEGQYN 205
+ V P +AE + +FD ++ N
Sbjct: 259 IVIPKSVTPERIAENFQVFDFELSPEDMN 287
>pdb|1DLA|A Chain A, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|B Chain B, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|C Chain C, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|D Chain D, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
Length = 314
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 120 PLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVGTVVDRNR 179
PL P++ W K DPS + RI +I ++ T V RF + RN
Sbjct: 210 PLGSPDRPWAKPEDPSLL----EDPRIKAI-AAKYNKTTAQVLIRFPM--------QRNL 256
Query: 180 AI---CVQPFLMAEGYVIFDIKIGEGQYN 205
+ V P +AE + +FD ++ N
Sbjct: 257 IVIPKSVTPERIAENFQVFDFELSPEDMN 285
>pdb|1EKO|A Chain A, Pig Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1AH3|A Chain A, Aldose Reductase Complexed With Tolrestat Inhibitor
pdb|1AH4|A Chain A, Pig Aldose Reductase, Holo Form
Length = 315
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 120 PLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVGTVVDRNR 179
PL P++ W K DPS + RI +I ++ T V RF + RN
Sbjct: 211 PLGSPDRPWAKPEDPSLL----EDPRIKAI-AAKYNKTTAQVLIRFPM--------QRNL 257
Query: 180 AI---CVQPFLMAEGYVIFDIKIGEGQYN 205
+ V P +AE + +FD ++ N
Sbjct: 258 IVIPKSVTPERIAENFQVFDFELSPEDMN 286
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 161 VYFRFDIVDVVGTVVDRNR---AICVQPFLMAEGYVI-----------FDIKIGEGQYNW 206
+Y RF +++ + R R + FLMA G ++ D K+ EG + +
Sbjct: 52 LYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVY 111
Query: 207 KGKYFVETPATATERI 222
KG + P+T TE +
Sbjct: 112 KGGKIYKVPSTETEAL 127
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 161 VYFRFDIVDVVGTVVDRNR---AICVQPFLMAEGYVI-----------FDIKIGEGQYNW 206
+Y RF +++ + R R + FLMA G ++ D K+ EG + +
Sbjct: 54 LYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVY 113
Query: 207 KGKYFVETPATATERI 222
KG + P+T TE +
Sbjct: 114 KGGKIYKVPSTETEAL 129
>pdb|2ZOM|A Chain A, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|B Chain B, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|C Chain C, Crystal Structure Of Cuta1 From Oryza Sativa
Length = 113
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 14 EGQYNWKGKYFVVPQQGLGIFTSETFLDTKTENQNKAHE 52
E Y W+GK ++ L I T E+ LD TE+ HE
Sbjct: 46 ESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHE 84
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3PAJ|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 320
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 219 TERIYFETDAVHERYPEEIKITWDKYNLTSNLNTPVSISLKE 260
TE +YF+++A+ E + + ++ + K L +++ V +LKE
Sbjct: 15 TENLYFQSNAMKETHNSQDRLAYLKQQLPADITRSVIDTLKE 56
>pdb|1ZMO|A Chain A, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|B Chain B, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|C Chain C, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|D Chain D, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|E Chain E, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|F Chain F, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|G Chain G, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|H Chain H, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
Length = 244
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 102 VSRHGYLEFSDPPDHFTYPLSFPNKDWPKKNDPSF 136
+SR G L ++ P+ F P FP DW +N+P
Sbjct: 165 LSRDGILLYAIGPNFFNNPTYFPTSDW--ENNPEL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,148,747
Number of Sequences: 62578
Number of extensions: 431570
Number of successful extensions: 1675
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)