BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12378
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein CG31004 OS=Drosophila
melanogaster GN=CG31004 PE=1 SV=1
Length = 1431
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 58 WFFDRGGDDNEGDYQKDIHNSSPQIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHF 117
W+FD+ GDYQ DIH S Q+HKN NFQLPF+GFRFNYTR+S +GYLEFSDPP++
Sbjct: 168 WYFDKDMYGGRGDYQFDIHASMTQLHKNLNFQLPFYGFRFNYTRLSLNGYLEFSDPPEYL 227
Query: 118 TYPLSFPNKDWPKKNDPSFIGIFYSKCRIGSIRTTDIDQRTPGVYFRFDIVDVVG 172
TYPL FP KDWP K DPSF+GIF+SKCR+G I +DIDQRTPGVYFR + D++G
Sbjct: 228 TYPLVFPIKDWPAKRDPSFMGIFFSKCRVGRIYPSDIDQRTPGVYFRVE-RDLMG 281
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 74/98 (75%)
Query: 161 VYFRFDIVDVVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQYNWKGKYFVETPATATE 220
V FD V+GT VDRNR ICVQP+L AEGY+ F I +G ++ W+GKYFVETPA ATE
Sbjct: 470 VTCHFDTESVLGTYVDRNRVICVQPYLKAEGYIRFQISVGTQRFKWRGKYFVETPAAATE 529
Query: 221 RIYFETDAVHERYPEEIKITWDKYNLTSNLNTPVSISL 258
+I+F TD VH++ P EI+ITW++YNLTSN N V ISL
Sbjct: 530 KIFFTTDDVHKKNPAEIRITWNQYNLTSNANANVMISL 567
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 AEGYVIFDIKIGEGQYNWKGKYFV 25
AEGY+ F I +G ++ W+GKYFV
Sbjct: 498 AEGYIRFQISVGTQRFKWRGKYFV 521
>sp|P34501|YMS5_CAEEL Uncharacterized protein K03H1.5 OS=Caenorhabditis elegans
GN=K03H1.5 PE=1 SV=2
Length = 1385
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 81 QIHKNFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKDWPKKNDPSFIGIF 140
+ N F PFFGFRFNYT V G L F PP P +FPN WPK+ D SF+ F
Sbjct: 139 ETQTNLGFDCPFFGFRFNYTMVYPMGMLSFGLPP-FSAPPWTFPNPAWPKQRDHSFVAAF 197
Query: 141 YSKCRIGSIRTTDIDQRTPGVYFR 164
Y+ I T I V+FR
Sbjct: 198 YADAMFQWIGNTKISN----VFFR 217
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 161 VYFRFDIVDVVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQ-YNWKGKYFV----ETP 215
V F+ T + R RA C+ P G V + GQ + + GK++V P
Sbjct: 492 VKVNFENWQTSCTRLSRVRARCIMPMFHKIGLVPIRMSRDGGQSFPFFGKFYVVNSERAP 551
Query: 216 ATAT--ERIYFETDAVHERYPEEIKITWDKYNLTSNLNTPVSISL 258
A+ + + + +T+ +E Y +E+ + W NLT N V ISL
Sbjct: 552 ASVSLKDSVDNKTNRWYEPYAQELALGWQAMNLTWNTGARVDISL 596
>sp|Q21874|YF1M_CAEEL Uncharacterized protein R09E10.5 OS=Caenorhabditis elegans
GN=R09E10.5 PE=1 SV=1
Length = 1459
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 91 PFFGFRFNYTRVSRHGYLEFSDPPDHF-TYPLSFPNKDWPKKNDPSFIGIFYSKCRIGSI 149
P++G +NYT +S +GYL F+ D T + DWP++ DP+ I + K ++
Sbjct: 118 PYYGGLYNYTTISVNGYLGFATVLDQGPTINVGPETTDWPRQEDPAMIAPYLCKQQVPQ- 176
Query: 150 RTTDIDQRTPGVYFRF 165
R GVY+R
Sbjct: 177 --QGNPARRAGVYYRL 190
>sp|Q20762|YAO6_CAEEL Uncharacterized protein F54D1.6 OS=Caenorhabditis elegans
GN=F54D1.6 PE=1 SV=4
Length = 1423
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 85 NFNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHF-TYPLSFPNKDWPKKNDPSFIGIFYSK 143
+ + PF+G +NY+ +S +GY+ F+ D T + DWP+ DP+ I + K
Sbjct: 81 DLHMYFPFYGGLYNYSTLSVNGYIGFATVLDQGPTLNVGPDMTDWPRHEDPAMIAPYLCK 140
Query: 144 CRI 146
+I
Sbjct: 141 QQI 143
>sp|Q9DBX3|SUSD2_MOUSE Sushi domain-containing protein 2 OS=Mus musculus GN=Susd2 PE=1
SV=1
Length = 820
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 158 TPGVYFRF-DIVDVVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQ-YNWKGKYFVETP 215
T GV RF + + +G V D + C+ P L GY+ F I + G+ + G + P
Sbjct: 87 TDGVICRFKESIQTLGYVDDFYQVHCISPLLYESGYIPFTISMDNGRSFPHAGTWLAAHP 146
Query: 216 ATATERIYFE-TDAVHERY------PEEIKITWDKYNLTSNLNTP-VSISL 258
+E + + H +Y + +TWD TS L TP V+I L
Sbjct: 147 YKVSESEKSQLVNETHWQYYGTSDTRGNLNLTWD----TSALPTPAVTIEL 193
>sp|Q49WX5|SYI_STAS1 Isoleucine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=ileS
PE=3 SV=1
Length = 916
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 139 IFYSKCRIGSIRTTDI---DQRTPGVYFRFDIVDVVGTVVDRNRAI--CVQPFLMAEGYV 193
+++S S+ +I D+R+P +Y FD++D G V D + I P+ +
Sbjct: 183 VYWSPSSESSLAEAEIEYQDKRSPSIYVAFDVIDGKGIVDDDAQFIIWTTTPWTLPSNVA 242
Query: 194 I-FDIKIGEGQYNWKGKYFV 212
I + GQYN GK ++
Sbjct: 243 ITVHPDLTYGQYNVNGKKYI 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,745,383
Number of Sequences: 539616
Number of extensions: 5112690
Number of successful extensions: 7975
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7967
Number of HSP's gapped (non-prelim): 9
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)