Query psy12378
Match_columns 260
No_of_seqs 33 out of 35
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 17:36:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxk_A Camta1, calmodulin bind 22.4 92 0.0031 23.4 3.9 33 170-203 47-79 (95)
2 3n1f_C Cell adhesion molecule- 18.0 1E+02 0.0034 21.8 3.1 26 214-244 3-28 (102)
3 3muj_A Transcription factor CO 17.6 1.3E+02 0.0043 25.1 4.0 44 168-211 36-87 (138)
4 3lti_A DNA-directed RNA polyme 15.9 33 0.0011 31.5 0.1 25 168-192 44-68 (296)
5 1u3e_M HNH homing endonuclease 15.7 55 0.0019 26.3 1.4 75 169-245 16-96 (174)
6 3gbl_A BETA2-microglobulin; im 14.5 69 0.0024 23.1 1.6 18 228-245 26-43 (97)
7 1lk2_B Beta-2-microglobulin; c 13.5 63 0.0021 23.3 1.1 18 228-245 26-43 (99)
8 1k5n_B Beta-2-microglobulin, l 13.4 64 0.0022 23.3 1.1 18 228-245 27-44 (100)
9 2xfd_A VCBM60; sugar binding p 13.0 60 0.002 26.3 0.9 16 98-113 96-111 (112)
10 3lqc_A DNA repair protein XRCC 12.4 84 0.0029 27.4 1.7 31 168-198 118-152 (189)
No 1
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=22.41 E-value=92 Score=23.45 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeeeeeeeccceeecceeeeeeeEEEEEEecCcc
Q psy12378 170 VVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQ 203 (260)
Q Consensus 170 v~g~~vd~nRA~CiqPf~~~~Gyv~f~isidg~~ 203 (260)
+-..+++..--+|+.|- +..|-|.|.|.+|+..
T Consensus 47 vpa~~~s~~vl~C~tPp-~~~G~v~~~v~~d~~~ 79 (95)
T 2cxk_A 47 VPASLIQPGVLRCYCPA-HDTGLVTLQVAFNNQI 79 (95)
T ss_dssp EECEEEETTEEEEECCC-CCSEEEEEEEEETTEE
T ss_pred EeEEEeECCEEEEEecC-CCCceEeEEEEECCee
Confidence 34445666667999999 7999999999999763
No 2
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=17.98 E-value=1e+02 Score=21.78 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=17.2
Q ss_pred CcccceeeEEeeccccccCCccceeEEeecc
Q psy12378 214 TPATATERIYFETDAVHERYPEEIKITWDKY 244 (260)
Q Consensus 214 tPatA~e~I~f~dd~~he~~P~EI~ItW~~~ 244 (260)
.|..|++.+.... .++..|.++|++-
T Consensus 3 ~P~~~P~~~~~~~-----~s~tsi~v~W~~p 28 (102)
T 3n1f_C 3 TPITGPHIAYTEA-----VSDTQIMLKWTYI 28 (102)
T ss_dssp -CCSCCEEEEEEE-----CSSSCEEEEEECC
T ss_pred CCCCCCceeEEEE-----cCCCEEEEEeECC
Confidence 4777887776643 4567778888654
No 3
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=17.60 E-value=1.3e+02 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=32.7
Q ss_pred eeeeeee------eeeccceeecceeeeeeeEEEEEEecCcc--cceeeEEE
Q psy12378 168 VDVVGTV------VDRNRAICVQPFLMAEGYVIFDIKIGEGQ--YNWKGKYF 211 (260)
Q Consensus 168 ~~v~g~~------vd~nRA~CiqPf~~~~Gyv~f~isidg~~--y~WkGkyy 211 (260)
|.+||.- +..-.-+|..|--+.-|.|.+.++..++. -++-|+|-
T Consensus 36 qV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf~~g~p~~F~ 87 (138)
T 3muj_A 36 QVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFV 87 (138)
T ss_dssp EEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEECTTSCEEEE
T ss_pred EEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCcccccCCCceEE
Confidence 6677643 33345599999999999999999998773 36667775
No 4
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=15.86 E-value=33 Score=31.49 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=19.9
Q ss_pred eeeeeeeeeeccceeecceeeeeee
Q psy12378 168 VDVVGTVVDRNRAICVQPFLMAEGY 192 (260)
Q Consensus 168 ~~v~g~~vd~nRA~CiqPf~~~~Gy 192 (260)
..++...|||.|-.-+.-+|.|-||
T Consensus 44 ~d~~~vrIdr~rK~p~t~lLrAlG~ 68 (296)
T 3lti_A 44 KDNLFVRIDRRRKLPATIILRALNY 68 (296)
T ss_dssp TSCEEEEETTCCCEETHHHHHHTTC
T ss_pred CCeEEEEEcCcccchHHHHHHHcCC
Confidence 4556667899888888888999885
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=15.66 E-value=55 Score=26.28 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=49.4
Q ss_pred eeeeeeeeeccceeecceeeeeeeEEEEEEecCcccceee------EEEEeCcccceeeEEeeccccccCCccceeEEee
Q psy12378 169 DVVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQYNWKG------KYFVETPATATERIYFETDAVHERYPEEIKITWD 242 (260)
Q Consensus 169 ~v~g~~vd~nRA~CiqPf~~~~Gyv~f~isidg~~y~WkG------kyyVetPatA~e~I~f~dd~~he~~P~EI~ItW~ 242 (260)
|-.|+|.+..+..-+.|.+...||..+.|..+|.. .|.. ..|+.+|. .-..|...|.+=..-+++||+.-=.
T Consensus 16 s~~Grv~~~~~~~~l~~~~~~~GY~~v~~~~~g~~-~~~~vHrlVa~~f~~~~~-~~~~v~H~dg~k~nn~~~NL~~~t~ 93 (174)
T 1u3e_M 16 SNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKG-KTFQVHRLVAIHFCEGYE-EGLVVDHKDGNKDNNLSTNLRWVTQ 93 (174)
T ss_dssp ETTSCEEESSSCSEECCBCCSSCCCEEEEEETTEE-EEEEHHHHHHHHHCTTCC-TTCEEEETTSCTTCCCGGGEEEECH
T ss_pred cCCceEEEcCCCeEEccccCCCCcEEEEEEeCCcE-EEEEeHHHHHHHhcCCCC-CCCEEEcCCCCCCCCCHHHcEECCH
Confidence 56788888777666788888999999999876531 1110 01233442 2357888887777778888876544
Q ss_pred ccc
Q psy12378 243 KYN 245 (260)
Q Consensus 243 ~~N 245 (260)
+.|
T Consensus 94 ~eN 96 (174)
T 1u3e_M 94 KIN 96 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 6
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0
Probab=14.54 E-value=69 Score=23.10 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=14.6
Q ss_pred ccccCCccceeEEeeccc
Q psy12378 228 AVHERYPEEIKITWDKYN 245 (260)
Q Consensus 228 ~~he~~P~EI~ItW~~~N 245 (260)
.+...+|++|.|+|-+-.
T Consensus 26 ~~~gFyP~~i~v~W~~~g 43 (97)
T 3gbl_A 26 YVSGFHPPDISIELLKNG 43 (97)
T ss_dssp EEECCBSSCEEEEEEETT
T ss_pred EEcceeCCccEEEEEECC
Confidence 457789999999998743
No 7
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Probab=13.55 E-value=63 Score=23.35 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=14.2
Q ss_pred ccccCCccceeEEeeccc
Q psy12378 228 AVHERYPEEIKITWDKYN 245 (260)
Q Consensus 228 ~~he~~P~EI~ItW~~~N 245 (260)
.+...+|++|.|+|-+-.
T Consensus 26 ~~~gfyP~~i~v~W~k~g 43 (99)
T 1lk2_B 26 YVTQFHPPHIEIQMLKNG 43 (99)
T ss_dssp EEEEEBSSCCEEEEEETT
T ss_pred EEEEEECCCcEEEEEECC
Confidence 356789999999997643
No 8
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...
Probab=13.36 E-value=64 Score=23.34 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.3
Q ss_pred ccccCCccceeEEeeccc
Q psy12378 228 AVHERYPEEIKITWDKYN 245 (260)
Q Consensus 228 ~~he~~P~EI~ItW~~~N 245 (260)
.+...+|++|.|+|.+-.
T Consensus 27 ~~~gFyP~~i~v~W~k~g 44 (100)
T 1k5n_B 27 YVSGFHPSDIEVDLLKNG 44 (100)
T ss_dssp EEEEEBSSCCEEEEEETT
T ss_pred EEEeeECCceEEEEEECC
Confidence 356779999999997643
No 9
>2xfd_A VCBM60; sugar binding protein; HET: CBI; 1.19A {Escherichia coli} PDB: 2xfe_A* 2xhh_A 2xhj_A
Probab=13.03 E-value=60 Score=26.33 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.6
Q ss_pred eeEEEeeceeeeccCC
Q psy12378 98 NYTRVSRHGYLEFSDP 113 (260)
Q Consensus 98 NYT~lS~NGYl~Fsd~ 113 (260)
.=.+|+-||||+|+.+
T Consensus 96 ~sE~lhcnG~i~fG~~ 111 (112)
T 2xfd_A 96 NSEWLHCNGYISFGNV 111 (112)
T ss_dssp SCSEECSSEEEEEEEC
T ss_pred cceEEEeceEecccCC
Confidence 5568999999999875
No 10
>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
Probab=12.41 E-value=84 Score=27.41 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=23.0
Q ss_pred eeeeeeeeeeccceeecceeee----eeeEEEEEE
Q psy12378 168 VDVVGTVVDRNRAICVQPFLMA----EGYVIFDIK 198 (260)
Q Consensus 168 ~~v~g~~vd~nRA~CiqPf~~~----~Gyv~f~is 198 (260)
+++...--||+|-+|-|||-+. .-+|+|.-+
T Consensus 118 ~~~~~~kWDrvkivCsQPfnk~~~yGLsFv~~~s~ 152 (189)
T 3lqc_A 118 RAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSP 152 (189)
T ss_dssp HHHHTSCEEEEEEEEECTTCTTSCCEEEEEEEECC
T ss_pred hhhhhhcceeEEEEEeCCCccccccceEEEEEecC
Confidence 5555667899999999999544 556776654
Done!