RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12378
         (260 letters)



>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 347

 Score = 28.0 bits (60), Expect = 1.1
 Identities = 20/150 (13%), Positives = 34/150 (22%), Gaps = 10/150 (6%)

Query: 86  FNFQLPFFGFRFNYTRVSRHGYLEFSDPPDHFTYPLSFPNKDWPKKNDPSFIGIFYSKCR 145
                  FG    +    R            +        K    +   + +        
Sbjct: 181 PLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP 240

Query: 146 IGSIRTTDIDQRTPGVYFRFDIVDV-VGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQY 204
            G    T          +  D V V     V ++  I  +P L          +      
Sbjct: 241 GGVTVKT-----EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGV 294

Query: 205 NWKGKYFVETPATATERIYFETDAVHERYP 234
           N   +Y  +       R+YF  +   E Y 
Sbjct: 295 N---RYEYDQLRAPVGRVYFTGEHTSEHYN 321


>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1,
           ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 51

 Score = 24.5 bits (54), Expect = 2.7
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 147 GSIRTTDIDQRTPGVYFRFD--IVDVVGTVVDRNRAICVQPF 186
           G + +T+      G Y         ++G        + V P 
Sbjct: 7   GDLLSTNPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPL 48


>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.2 bits (55), Expect = 3.3
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 8/41 (19%)

Query: 169 DVVGTVVDRNRAICVQPFLMAEGYVIFDIKIGEGQYNWKGK 209
           D V  + +     C   F +         ++ +G+Y    K
Sbjct: 6   DAVKRISEDPPCKCPTKFCV--------ERLSQGRYRVGEK 38


>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma
           constant domain 1, CH1-gamma {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 24.7 bits (54), Expect = 3.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 229 VHERYPEEIKITWDKYNLTSNLNT 252
           V   +PE + +TW+  +L+S ++T
Sbjct: 29  VKGYFPEPVTVTWNSGSLSSGVHT 52


>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 186 FLMAEGYVIFDIKIGEGQY 204
           FL  +  +I DI++G G +
Sbjct: 4   FLKRDNLLIADIELGCGNF 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,091,184
Number of extensions: 54056
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 17
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)