Query psy12380
Match_columns 342
No_of_seqs 183 out of 1795
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1315|consensus 100.0 1E-60 2.3E-65 443.4 16.7 267 42-321 12-281 (307)
2 KOG1314|consensus 100.0 9.9E-49 2.2E-53 358.4 11.1 259 37-334 9-295 (414)
3 KOG1311|consensus 100.0 4.8E-43 1E-47 331.0 21.1 177 141-319 106-291 (299)
4 PF01529 zf-DHHC: DHHC palmito 100.0 5.1E-40 1.1E-44 286.4 11.2 171 88-271 1-173 (174)
5 COG5273 Uncharacterized protei 100.0 3E-39 6.5E-44 303.9 16.9 224 75-319 57-301 (309)
6 KOG1313|consensus 100.0 1.9E-39 4.1E-44 289.0 12.3 174 148-321 102-305 (309)
7 KOG1312|consensus 100.0 2E-29 4.3E-34 226.1 9.1 171 75-271 99-290 (341)
8 KOG0509|consensus 100.0 3.3E-29 7.1E-34 246.5 10.5 220 43-296 341-583 (600)
9 PF01529 zf-DHHC: DHHC palmito 93.7 0.64 1.4E-05 39.9 9.7 56 144-210 58-113 (174)
10 COG5273 Uncharacterized protei 89.7 11 0.00023 36.0 13.7 34 158-191 105-138 (309)
11 KOG1311|consensus 86.6 2.4 5.2E-05 40.0 7.3 42 161-202 112-164 (299)
12 PRK04136 rpl40e 50S ribosomal 85.2 0.47 1E-05 31.9 1.2 24 147-170 13-36 (48)
13 PF13240 zinc_ribbon_2: zinc-r 84.9 0.51 1.1E-05 26.8 1.1 21 150-170 1-21 (23)
14 KOG1315|consensus 84.3 6.2 0.00013 37.5 8.7 163 145-320 120-289 (307)
15 PF13248 zf-ribbon_3: zinc-rib 77.9 1.2 2.7E-05 25.9 1.0 22 149-170 3-24 (26)
16 PTZ00303 phosphatidylinositol 75.4 1.4 3.1E-05 46.2 1.4 23 148-170 460-489 (1374)
17 PF01020 Ribosomal_L40e: Ribos 72.6 2.4 5.1E-05 29.1 1.5 25 147-171 16-42 (52)
18 KOG0509|consensus 68.8 2.3 4.9E-05 43.6 1.1 58 147-205 324-381 (600)
19 PF12773 DZR: Double zinc ribb 66.0 5.3 0.00011 26.8 2.2 35 147-181 11-48 (50)
20 COG1552 RPL40A Ribosomal prote 64.0 1.3 2.9E-05 29.8 -1.1 23 148-170 14-36 (50)
21 PF01363 FYVE: FYVE zinc finge 62.5 2.7 5.9E-05 30.3 0.2 26 147-172 8-35 (69)
22 smart00064 FYVE Protein presen 58.0 7.2 0.00016 27.9 1.8 25 148-172 10-36 (68)
23 PF10571 UPF0547: Uncharacteri 57.5 6 0.00013 23.1 1.0 22 149-170 1-22 (26)
24 KOG1842|consensus 55.3 3.2 7E-05 40.9 -0.6 28 144-171 176-205 (505)
25 PF12773 DZR: Double zinc ribb 53.4 9.4 0.0002 25.5 1.7 24 146-169 27-50 (50)
26 PF07010 Endomucin: Endomucin; 50.5 24 0.00052 31.9 4.1 29 77-105 197-225 (259)
27 PF06906 DUF1272: Protein of u 50.4 6.6 0.00014 27.4 0.5 36 150-188 7-50 (57)
28 PF14015 DUF4231: Protein of u 50.2 70 0.0015 24.9 6.6 26 259-284 78-103 (112)
29 PF00641 zf-RanBP: Zn-finger i 39.7 13 0.00028 22.2 0.5 22 149-170 5-26 (30)
30 cd00065 FYVE FYVE domain; Zinc 39.3 20 0.00043 24.4 1.6 23 149-171 3-27 (57)
31 PF07282 OrfB_Zn_ribbon: Putat 36.4 22 0.00048 25.4 1.5 31 141-171 21-55 (69)
32 PF00751 DM: DM DNA binding do 33.7 16 0.00035 24.6 0.3 23 161-183 1-28 (47)
33 KOG3183|consensus 33.5 20 0.00043 32.6 1.0 21 163-183 24-49 (250)
34 KOG1729|consensus 32.0 11 0.00024 35.5 -1.0 30 144-173 164-196 (288)
35 PF02150 RNA_POL_M_15KD: RNA p 30.1 18 0.00038 22.7 0.1 7 149-155 2-8 (35)
36 PF09889 DUF2116: Uncharacteri 29.4 68 0.0015 22.7 2.9 22 149-170 4-26 (59)
37 smart00661 RPOL9 RNA polymeras 28.9 25 0.00055 23.5 0.7 9 150-158 2-10 (52)
38 PF07649 C1_3: C1-like domain; 28.8 18 0.00038 21.6 -0.1 21 150-170 2-23 (30)
39 PRK13743 conjugal transfer pro 28.1 3.4E+02 0.0074 22.4 7.1 24 189-212 36-59 (141)
40 PF09788 Tmemb_55A: Transmembr 27.3 2.8E+02 0.0061 25.6 7.2 8 148-155 157-164 (256)
41 PRK00432 30S ribosomal protein 26.6 35 0.00076 23.2 1.0 23 148-170 20-45 (50)
42 PLN00186 ribosomal protein S26 26.0 27 0.00059 27.8 0.4 15 161-175 19-33 (109)
43 PF08600 Rsm1: Rsm1-like; Int 26.0 34 0.00073 26.3 1.0 12 175-186 54-65 (91)
44 COG2093 DNA-directed RNA polym 25.8 36 0.00079 24.3 1.0 22 149-170 5-26 (64)
45 PRK03681 hypA hydrogenase nick 25.8 37 0.00079 27.3 1.2 25 146-170 68-95 (114)
46 PF03107 C1_2: C1 domain; Int 25.6 40 0.00086 20.1 1.1 20 150-169 2-22 (30)
47 PRK09335 30S ribosomal protein 24.2 30 0.00065 26.9 0.4 20 161-180 19-38 (95)
48 PHA02942 putative transposase; 23.5 49 0.0011 32.5 1.8 31 140-170 317-350 (383)
49 PTZ00172 40S ribosomal protein 22.9 32 0.0007 27.3 0.3 15 161-175 19-33 (108)
50 PRK14559 putative protein seri 22.5 53 0.0012 34.6 1.9 30 149-180 16-45 (645)
51 PF07754 DUF1610: Domain of un 21.5 59 0.0013 18.6 1.2 19 151-169 1-23 (24)
52 PF00130 C1_1: Phorbol esters/ 21.4 71 0.0015 21.3 1.8 34 146-179 9-50 (53)
53 COG4640 Predicted membrane pro 20.9 47 0.001 32.6 1.1 25 149-173 2-26 (465)
54 PHA02680 ORF090 IMV phosphoryl 20.0 4.1E+02 0.0089 20.4 6.8 25 247-271 59-83 (91)
No 1
>KOG1315|consensus
Probab=100.00 E-value=1e-60 Score=443.39 Aligned_cols=267 Identities=41% Similarity=0.827 Sum_probs=230.6
Q ss_pred cchhhHHHHHHhhhheeeeEeeeccccccCccc--hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhhhh
Q psy12380 42 RSIPLLTAVLVICYSYCCYIFLYCDKSLNEQEP--LTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMNKIWEA 119 (342)
Q Consensus 42 ~~~pv~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~sy~~~~~tdPG~~p~~~~~~~~~~~~~~~~ 119 (342)
+|+|++++.+++.|++|++++.+|........+ ..+++++.++++.+|+|++++++|||.+|..+.++.++.+.. ++
T Consensus 12 r~~~~~~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~-~~ 90 (307)
T KOG1315|consen 12 RWIPVLIILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSL-EN 90 (307)
T ss_pred cchhheeeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccc-cc
Confidence 399999999999999999999999877666433 678889999999999999999999999999999888766544 22
Q ss_pred ccchhhhhhhhhccccCCCceeecCCCceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHH
Q psy12380 120 DENCEKIDAILVPKARRLPIYTYTTGGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLA 199 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~ 199 (342)
+... +++.+...++.++..|+|.||+.+||+|||||++|+|||+||||||||+|||||.+|||+|++|++
T Consensus 91 ~~~~----------~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~ 160 (307)
T KOG1315|consen 91 GSDN----------ERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLF 160 (307)
T ss_pred cCcc----------cccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHH
Confidence 1111 134455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhcCcccC-CC
Q psy12380 200 YGAIYCVIMLSILPIELYKYWWQDKVLDEALLYHYTILSISAVIFFAILIALFSYHIYLVLNNRTTLEAFRAPLFSY-GQ 278 (342)
Q Consensus 200 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ll~~h~~li~~n~Tt~E~~~~~~~~~-~~ 278 (342)
|+.+++++.+++.+..+...+.....+.....+++++++++++.|++.++.|+++|++||++|+||+|.++.+.++. +.
T Consensus 161 y~~l~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~ 240 (307)
T KOG1315|consen 161 YTNLYSIYVLVTTLIGFTKYFQGGAGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLH 240 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccccccccc
Confidence 99999999999988888877741233333456677788888999999999999999999999999999998876653 46
Q ss_pred CCCCCCHhHHHHHhhhcCCCccceeeccccCCCCcceecCCCc
Q psy12380 279 DKNGFSLGKRNNFLQVFGDKKWKWFFPVFSSLGCGWSFDFPKK 321 (342)
Q Consensus 279 ~~npyd~G~~~N~~~vfG~~~~~Wl~P~~~~~gdG~~f~~~~~ 321 (342)
.++.|++ ..|++|+||+++..|++|+.++.+||.+++.+..
T Consensus 241 ~~~~~~~--~~n~~~vfg~~~~~wl~P~~~s~~~~~~~~~~~~ 281 (307)
T KOG1315|consen 241 NKNGFNL--YVNFREVFGSNLLYWLLPIDSSWGDGVSFPLRGD 281 (307)
T ss_pred ccCCcce--eecHHHHhCCCceEEeccccCccccCcccccccc
Confidence 7788888 8999999999999999999999999999999865
No 2
>KOG1314|consensus
Probab=100.00 E-value=9.9e-49 Score=358.38 Aligned_cols=259 Identities=23% Similarity=0.401 Sum_probs=188.6
Q ss_pred ccccccchhhHHHHHHh-hhheeeeEeeeccccccCccc-hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhhh
Q psy12380 37 SYELIRSIPLLTAVLVI-CYSYCCYIFLYCDKSLNEQEP-LTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMN 114 (342)
Q Consensus 37 ~~~~~~~~pv~~~~~~i-~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~sy~~~~~tdPG~~p~~~~~~~~~~~ 114 (342)
..+.++|.|++.+.++. +.++..|....++.+..+... ...+.+-+...|.++||+.|++++||++|.+|.|+...++
T Consensus 9 ~rr~~hwGpi~alsiit~i~~~~~~~n~lww~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~ 88 (414)
T KOG1314|consen 9 FRRFLHWGPITALSIITIITSTTGYMNSLWWFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDE 88 (414)
T ss_pred hhheeccccHHHHHHHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH
Confidence 46788998887665543 333334443455555555443 6667777788899999999999999999999988665433
Q ss_pred hhhhhccchhhhhhhhhccccCCCceeecCCCceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHH
Q psy12380 115 KIWEADENCEKIDAILVPKARRLPIYTYTTGGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFY 194 (342)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F 194 (342)
.+ ..||.+|+.+|+||||||+.|||||.||||||||+|||||..||.+|
T Consensus 89 ~~-------------------------------lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F 137 (414)
T KOG1314|consen 89 MF-------------------------------LQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYF 137 (414)
T ss_pred HH-------------------------------HHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHH
Confidence 32 37999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhH----hhhhhhcc----ccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12380 195 ILFLAYGAIYCVIMLSILPI----ELYKYWWQ----DKVLDE----ALLYHYTILSISAVIFFAILIALFSYHIYLVLNN 262 (342)
Q Consensus 195 ~lfl~~~~i~~~~~~~~~~~----~~~~~~~~----~~~~~~----~~~~~~i~~~~~~~~~~~~~~~ll~~h~~li~~n 262 (342)
+.||++..++|+-..+..+. .++..|.. ..++.. ...+..++.+.+++...+.++.|++.|+..|++|
T Consensus 138 ~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~n 217 (414)
T KOG1314|consen 138 LRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNN 217 (414)
T ss_pred HHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999977654433222 23334421 122211 1222233444555566677889999999999999
Q ss_pred ccchhhhhcCc--------ccC--CCCCCCCCHhHHHHHhhhcCCCccceeeccccCCCCcceecCCCcccH----HHhh
Q psy12380 263 RTTLEAFRAPL--------FSY--GQDKNGFSLGKRNNFLQVFGDKKWKWFFPVFSSLGCGWSFDFPKKNDI----EAKL 328 (342)
Q Consensus 263 ~Tt~E~~~~~~--------~~~--~~~~npyd~G~~~N~~~vfG~~~~~Wl~P~~~~~gdG~~f~~~~~~~~----~~~~ 328 (342)
+|.||.+-.++ .++ +....|||+|++.|+++||-.+ ..+.|||+.||..+..+. .++|
T Consensus 218 rt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~--------~~~~gdg~~wPv~~gc~qytlt~eql 289 (414)
T KOG1314|consen 218 RTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQN--------KKEEGDGIEWPVVEGCVQYTLTIEQL 289 (414)
T ss_pred CcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhc--------cccCCCCccccccCcccccceeHHHH
Confidence 99999764211 112 4567899999888999999655 236799999999976432 4566
Q ss_pred cccCCC
Q psy12380 329 KQEEDV 334 (342)
Q Consensus 329 ~~~~~~ 334 (342)
.|++|+
T Consensus 290 ~qk~~k 295 (414)
T KOG1314|consen 290 TQKLDK 295 (414)
T ss_pred HHHHHh
Confidence 666654
No 3
>KOG1311|consensus
Probab=100.00 E-value=4.8e-43 Score=330.99 Aligned_cols=177 Identities=32% Similarity=0.631 Sum_probs=140.7
Q ss_pred eecCCCceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q psy12380 141 TYTTGGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYW 220 (342)
Q Consensus 141 ~~~~~~~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~~~~ 220 (342)
+.+...+++||.+|+.+||+|||||+.||+||+||||||||+|||||++|||+|++|+++.++.+++.++.....+....
T Consensus 106 ~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~ 185 (299)
T KOG1311|consen 106 VNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRA 185 (299)
T ss_pred cCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566789999999999999999999999999999999999999999999999999999999999998888777655432
Q ss_pred ccc--cc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhcCcccCCCCCCCCCHhHHHHHhhhc
Q psy12380 221 WQD--KV---LDEALLYHYTILSISAVIFFAILIALFSYHIYLVLNNRTTLEAFRAPLFSYGQDKNGFSLGKRNNFLQVF 295 (342)
Q Consensus 221 ~~~--~~---~~~~~~~~~i~~~~~~~~~~~~~~~ll~~h~~li~~n~Tt~E~~~~~~~~~~~~~npyd~G~~~N~~~vf 295 (342)
... .. .........+++.++++++.++++.|+.+|++++.+|+||+|.+++ .+.....++||.|.++|++++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~~~~~~~~~~~~g~~~n~~~~~ 263 (299)
T KOG1311|consen 186 DNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--LDFVSRSNPYDLGLLKNLQEVF 263 (299)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--cccccccCCCchhHHHHHHHHh
Confidence 211 11 1112233344555677788888889999999999999999999886 2222235999999999999999
Q ss_pred CCCc-cceeeccccC---CCCcceecCC
Q psy12380 296 GDKK-WKWFFPVFSS---LGCGWSFDFP 319 (342)
Q Consensus 296 G~~~-~~Wl~P~~~~---~gdG~~f~~~ 319 (342)
|.+. ..|+.|...+ +.||..++..
T Consensus 264 ~~~~~~~~~~p~~~~~~~p~~~~~~~~~ 291 (299)
T KOG1311|consen 264 GGPLPLSWLSPFARSGPLPHDGEGGPPT 291 (299)
T ss_pred CCCCCcccccccccCCCCCCCCCCCCcc
Confidence 9865 4599998753 4666666554
No 4
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=5.1e-40 Score=286.44 Aligned_cols=171 Identities=32% Similarity=0.668 Sum_probs=126.0
Q ss_pred HHHHHHhhccCCCCCCCCCCCChhhhhhhhhhccchhhhhhhhhccccCCCceeecCCCceeeccccccccCCCCcCCcc
Q psy12380 88 VWSYYKTTTTPPPPIPPDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGYIRYCQECAIIKPDRTHHCRV 167 (342)
Q Consensus 88 ~~sy~~~~~tdPG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~RshHC~~ 167 (342)
+++|++++++|||++|+....+.+..+. .+.... .+......+..++.++|.+|+.+||+|||||+.
T Consensus 1 ~~~~~~~~~~dPG~~~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~ 67 (174)
T PF01529_consen 1 IWSYFLTIFIDPGYVPRSNPDEDQRQEE----KEEEQN---------QSIDSPEDDENGELKYCSTCKIIKPPRSHHCRV 67 (174)
T ss_pred CEEehhhheECCcccCCccccccccccc----cccccc---------hhhhhhccccCCCCEECcccCCcCCCcceeccc
Confidence 3679999999999999751111111100 000000 000111244667889999999999999999999
Q ss_pred cCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccccccchh--hhHHHHHHHHHHHHHH
Q psy12380 168 CGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQDKVLDEA--LLYHYTILSISAVIFF 245 (342)
Q Consensus 168 C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 245 (342)
||+||+||||||||+|||||.+|||+|++|+++..+++++.+...+..+............. .....+++++++++++
T Consensus 68 C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (174)
T PF01529_consen 68 CNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIFSNFSSIFLLIISIFFF 147 (174)
T ss_pred cccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887777766544311111111 1111256667778888
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhc
Q psy12380 246 AILIALFSYHIYLVLNNRTTLEAFRA 271 (342)
Q Consensus 246 ~~~~~ll~~h~~li~~n~Tt~E~~~~ 271 (342)
++++.++++|++++++|+||+|.+++
T Consensus 148 ~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 148 IFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 99999999999999999999999875
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=3e-39 Score=303.91 Aligned_cols=224 Identities=29% Similarity=0.547 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhhhhccchhhhhhhhhccccCCCceeecCCCceeecccc
Q psy12380 75 LTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGYIRYCQEC 154 (342)
Q Consensus 75 ~~~i~~~~l~~~~~~sy~~~~~tdPG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C 154 (342)
...+.+.+...+...+|++.+++|||+++++......++ ..+ +....+..+..++|.+|
T Consensus 57 ~~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~C~~C 115 (309)
T COG5273 57 LFIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRE-----------TIS----------RLLDDGKFGTENFCSTC 115 (309)
T ss_pred hhhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhh-----------hhh----------hhhhcCccccceecccc
Confidence 455667778889999999999999999986422111110 000 01234567788999999
Q ss_pred ccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccccccchhhhHHH
Q psy12380 155 AIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQDKVLDEALLYHY 234 (342)
Q Consensus 155 ~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
+.+||+|||||+.||+||+||||||||+|||||.+|||+|++|+++....+...+.....++...+...+.+.....+.+
T Consensus 116 ~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 195 (309)
T COG5273 116 NIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLI 195 (309)
T ss_pred ccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887777776655542332222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhcCcccC---------------------CCCCCCCCHhHHHHHhh
Q psy12380 235 TILSISAVIFFAILIALFSYHIYLVLNNRTTLEAFRAPLFSY---------------------GQDKNGFSLGKRNNFLQ 293 (342)
Q Consensus 235 i~~~~~~~~~~~~~~~ll~~h~~li~~n~Tt~E~~~~~~~~~---------------------~~~~npyd~G~~~N~~~ 293 (342)
.....++..+++.+..+++++.+++..|+|++|..+..+... .+...|++.|.-+|+..
T Consensus 196 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 275 (309)
T COG5273 196 FGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLST 275 (309)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCcccccee
Confidence 122345566677888999999999999999999765322111 12235778888888888
Q ss_pred hcCCCccceeeccccCCCCcceecCC
Q psy12380 294 VFGDKKWKWFFPVFSSLGCGWSFDFP 319 (342)
Q Consensus 294 vfG~~~~~Wl~P~~~~~gdG~~f~~~ 319 (342)
++|.+...|..|....-..+.+|+.+
T Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
T COG5273 276 IKGSNALYWLTPLHTNYCNSYDFSLR 301 (309)
T ss_pred ecCCCceeeccccccCCCCccCcccc
Confidence 88888888888854444566666666
No 6
>KOG1313|consensus
Probab=100.00 E-value=1.9e-39 Score=289.03 Aligned_cols=174 Identities=23% Similarity=0.404 Sum_probs=134.1
Q ss_pred eeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhhhhh---cc-c
Q psy12380 148 IRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYW---WQ-D 223 (342)
Q Consensus 148 ~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~~~~---~~-~ 223 (342)
..+|.+|+.+||||+|||+.||+||+||||||||+|||||..|||||++|++|+++++.++.+.......... .. .
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 4799999999999999999999999999999999999999999999999999999999998777554332211 10 0
Q ss_pred cccc----------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhcCcc----cCCCCCCCC
Q psy12380 224 KVLD----------------EALLYHYTILSISAVIFFAILIALFSYHIYLVLNNRTTLEAFRAPLF----SYGQDKNGF 283 (342)
Q Consensus 224 ~~~~----------------~~~~~~~i~~~~~~~~~~~~~~~ll~~h~~li~~n~Tt~E~~~~~~~----~~~~~~npy 283 (342)
...+ ....-.++.+.++++.+.++++.+..||.++|.+|.|++|.....+. .....+||+
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~~ 261 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNPT 261 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCCc
Confidence 0000 01112234466777778888999999999999999999998654322 223458999
Q ss_pred CHhHHHHHhhhcCC--Cccc---eeeccccCC-CCcceecCCCc
Q psy12380 284 SLGKRNNFLQVFGD--KKWK---WFFPVFSSL-GCGWSFDFPKK 321 (342)
Q Consensus 284 d~G~~~N~~~vfG~--~~~~---Wl~P~~~~~-gdG~~f~~~~~ 321 (342)
+.|..+||+.++|- .+-. -++|....+ +.|.++++++.
T Consensus 262 n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~~~~~~~~~da 305 (309)
T KOG1313|consen 262 NFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVKYGDSKEKSDA 305 (309)
T ss_pred ccchHHHHHHhhccccCCceeEEEeccccccccccCCcccccch
Confidence 99999999999984 2223 478887655 78889987754
No 7
>KOG1312|consensus
Probab=99.96 E-value=2e-29 Score=226.07 Aligned_cols=171 Identities=23% Similarity=0.471 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhhhhccchhhhhhhhhccccCCCceeecCCCceeecccc
Q psy12380 75 LTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGYIRYCQEC 154 (342)
Q Consensus 75 ~~~i~~~~l~~~~~~sy~~~~~tdPG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C 154 (342)
.+.+....++++-.+++..++.+|||.+.+. .+..+ +...+ +....-.+...|++|
T Consensus 99 ~~~il~~l~vivp~i~f~ltc~snpg~i~k~------n~s~~-------------~~~yp-----YDy~if~k~~kCSTC 154 (341)
T KOG1312|consen 99 HYLILPYLLVIVPLIFFTLTCGSNPGIITKA------NESLF-------------LHVYP-----YDYVIFPKNVKCSTC 154 (341)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCccchh------hhccc-------------eeccC-----ccceeecCCCccccc
Confidence 3444445566677888999999999998752 11000 00000 001112334789999
Q ss_pred ccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccc--------
Q psy12380 155 AIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQDKVL-------- 226 (342)
Q Consensus 155 ~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------- 226 (342)
+..||+||+|||.|||||.|+||||.|+|||||.+|.|||++||++....+.+.++........... +..
T Consensus 155 ki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~s--dl~q~v~ilt~ 232 (341)
T KOG1312|consen 155 KIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMS--DLYQEVYILTL 232 (341)
T ss_pred cCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhcc--ccchheeeeee
Confidence 9999999999999999999999999999999999999999999999877777665543322111100 100
Q ss_pred ------chhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCccchhhhhc
Q psy12380 227 ------DEALLYHYTILSISAVI-------FFAILIALFSYHIYLVLNNRTTLEAFRA 271 (342)
Q Consensus 227 ------~~~~~~~~i~~~~~~~~-------~~~~~~~ll~~h~~li~~n~Tt~E~~~~ 271 (342)
+....+..+++.+.-.+ ...++++.+.+-.|+...|+||.|+.++
T Consensus 233 ~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~ 290 (341)
T KOG1312|consen 233 GHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRG 290 (341)
T ss_pred eecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhcc
Confidence 00011111111111111 0123566677778889999999998764
No 8
>KOG0509|consensus
Probab=99.96 E-value=3.3e-29 Score=246.45 Aligned_cols=220 Identities=19% Similarity=0.285 Sum_probs=136.6
Q ss_pred chhhHHHHHHhhhheeeeEeeeccccccCccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhhhhhhhhccc
Q psy12380 43 SIPLLTAVLVICYSYCCYIFLYCDKSLNEQEPLTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMNKIWEADEN 122 (342)
Q Consensus 43 ~~pv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~sy~~~~~tdPG~~p~~~~~~~~~~~~~~~~~~~ 122 (342)
.+|..+..+...|.++.++....+. ... .....+.+..+..++++.+...+|||.+|..-. ...
T Consensus 341 ~~~~~~~~~~~fw~~~~w~~~i~~~-~~~---~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~---~~~--------- 404 (600)
T KOG0509|consen 341 PLLSGFFLSTLFWFYYFWFSKITPY-TLF---DFHYCFIISVLAYFITFGLFLRSDPGFIPTSTE---VGR--------- 404 (600)
T ss_pred hhHHHHHHHHHHHHHHhhheeccch-hhh---hhHHHHHHHHHHHHHHHHHHhccCCCCCCCchh---hHH---------
Confidence 3455555555566666665522111 111 112222233344455677777799999996311 111
Q ss_pred hhhhhhhhhccccCCCceeecCCCce-eeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHH
Q psy12380 123 CEKIDAILVPKARRLPIYTYTTGGYI-RYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYG 201 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~ 201 (342)
+..+ ++.. .+..... ++|.+|-..||.||+||+.|||||.||||||||++||||.+|||+|+.|++..
T Consensus 405 -~tIs----~l~d------~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l 473 (600)
T KOG0509|consen 405 -ETIS----QLID------FGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTL 473 (600)
T ss_pred -HHHH----Hhhc------cccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHH
Confidence 1111 1111 1222233 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhhhhhccccccchhhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhcCcc
Q psy12380 202 AIYCVIMLSILPIELYKYWWQDKVLDEALLYHYTILSISAVIFF-----------------AILIALFSYHIYLVLNNRT 264 (342)
Q Consensus 202 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~ll~~h~~li~~n~T 264 (342)
...+.+.+....+++...-. .. .....++..+-.+.. ...+..-..|...++.+.|
T Consensus 474 ~~~~~~~l~~~~~y~~~~~~------~~-~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~t 546 (600)
T KOG0509|consen 474 LTVIVFYLYLCLYYIMNLEN------AS-TIYVGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLT 546 (600)
T ss_pred HHHHHHHHHHHHHHHhhcch------hH-HHHHHHHHHHHHHhCCccceeeeeeccccccccccccccccccceeeeccc
Confidence 88888877776666532111 10 111111111111100 0011222344456899999
Q ss_pred chhhhhcCccc-----CCCCCCCCCHhHHHHHhhhcC
Q psy12380 265 TLEAFRAPLFS-----YGQDKNGFSLGKRNNFLQVFG 296 (342)
Q Consensus 265 t~E~~~~~~~~-----~~~~~npyd~G~~~N~~~vfG 296 (342)
|+|.++.++.+ .++..+|++.|+.+|+.+++=
T Consensus 547 t~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~df~~ 583 (600)
T KOG0509|consen 547 TNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLVDFFL 583 (600)
T ss_pred HHHHHHHHHhhccccccCcCCCCCCchhhhcchheee
Confidence 99998765443 345678999999999999884
No 9
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=93.71 E-value=0.64 Score=39.86 Aligned_cols=56 Identities=23% Similarity=0.500 Sum_probs=41.0
Q ss_pred CCCceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHH
Q psy12380 144 TGGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLS 210 (342)
Q Consensus 144 ~~~~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~ 210 (342)
...+.++|..|+.--..+-|||..-|.||-+..|. .+=.|+++..-..+..++...
T Consensus 58 kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~-----------~F~~fl~~~~~~~~~~~~~~~ 113 (174)
T PF01529_consen 58 KPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHR-----------YFLLFLLYLCLYCLYFFILSL 113 (174)
T ss_pred CCCcceeccccccccccccccchhhccccccccHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999987763 344676666554444444333
No 10
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=89.70 E-value=11 Score=36.04 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=22.7
Q ss_pred cCCCCcCCcccCccccCcCccCccccccccccch
Q psy12380 158 KPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNY 191 (342)
Q Consensus 158 kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~ 191 (342)
+=.+.+.|++|+.=...+-|||.-=|.||-..=|
T Consensus 105 ~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DH 138 (309)
T COG5273 105 KFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDH 138 (309)
T ss_pred ccccceeccccccccCCCCccchhhcchhhccCc
Confidence 3445666777777777777777777777755443
No 11
>KOG1311|consensus
Probab=86.64 E-value=2.4 Score=40.02 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=35.2
Q ss_pred CCcCCcccCccccCcCccCccccccccccch-----------HHHHHHHHHHH
Q psy12380 161 RTHHCRVCGQCILKMDHHCPWLHNCMSFSNY-----------KFYILFLAYGA 202 (342)
Q Consensus 161 RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~-----------k~F~lfl~~~~ 202 (342)
+.++|..|+.-+..+-|||..=|+||-..=| |-+-.|+.+++
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 4899999999999999999999999976544 56777886665
No 12
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=85.16 E-value=0.47 Score=31.89 Aligned_cols=24 Identities=33% Similarity=0.793 Sum_probs=21.7
Q ss_pred ceeeccccccccCCCCcCCcccCc
Q psy12380 147 YIRYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 147 ~~~~C~~C~~~kP~RshHC~~C~~ 170 (342)
....|.+|...-|+|+..|+.||.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 357999999999999999999986
No 13
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=84.86 E-value=0.51 Score=26.80 Aligned_cols=21 Identities=33% Similarity=0.918 Sum_probs=18.2
Q ss_pred eccccccccCCCCcCCcccCc
Q psy12380 150 YCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 150 ~C~~C~~~kP~RshHC~~C~~ 170 (342)
+|+.|...-++.+..|..||.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 688999888999999999875
No 14
>KOG1315|consensus
Probab=84.28 E-value=6.2 Score=37.50 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHHHHHHHHhhHhhh-hhhccc
Q psy12380 145 GGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELY-KYWWQD 223 (342)
Q Consensus 145 ~~~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~~~~~~~~~~~~~-~~~~~~ 223 (342)
.++...|+.|+.=--..-|||..=|.||.-.++ +=.-.|+.+.+..+++........+.... ......
T Consensus 120 PdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~Ny-----------KfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~~~~ 188 (307)
T KOG1315|consen 120 PDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNY-----------KFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGAGPS 188 (307)
T ss_pred CCccccchhhhhhhhccccCCcceeceecccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 346679999987778889999999999987654 44556666665444333322222221111 101111
Q ss_pred cccchhhhHHHHH--HHHHHHH-HHHHHHHHHHH-HHHHHhcCccchhhhhcCcccCC-CCCCCCCHhHHHHHhhhcCCC
Q psy12380 224 KVLDEALLYHYTI--LSISAVI-FFAILIALFSY-HIYLVLNNRTTLEAFRAPLFSYG-QDKNGFSLGKRNNFLQVFGDK 298 (342)
Q Consensus 224 ~~~~~~~~~~~i~--~~~~~~~-~~~~~~~ll~~-h~~li~~n~Tt~E~~~~~~~~~~-~~~npyd~G~~~N~~~vfG~~ 298 (342)
........+..++ .+.+++. +..+-..|..- .+-+=..+..+.-.... ..++ ....+|+.+.-.|+...+++.
T Consensus 189 ~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~--~~~~~~~~~n~~~vfg~~~~~wl~P~ 266 (307)
T KOG1315|consen 189 SLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLH--NKNGFNLYVNFREVFGSNLLYWLLPI 266 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccccccccc--ccCCcceeecHHHHhCCCceEEeccc
Confidence 1111111111111 1111111 11111222211 11111222222211111 1111 114578888888899999887
Q ss_pred ccceeeccccC-CCCcceecCCC
Q psy12380 299 KWKWFFPVFSS-LGCGWSFDFPK 320 (342)
Q Consensus 299 ~~~Wl~P~~~~-~gdG~~f~~~~ 320 (342)
..-|--+...+ .+||.++..+.
T Consensus 267 ~~s~~~~~~~~~~~~~~~~~~~~ 289 (307)
T KOG1315|consen 267 DSSWGDGVSFPLRGDGLDFRTAS 289 (307)
T ss_pred cCccccCccccccccCCcccccc
Confidence 66676666443 47888877663
No 15
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=77.94 E-value=1.2 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.723 Sum_probs=19.0
Q ss_pred eeccccccccCCCCcCCcccCc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~ 170 (342)
++|+.|...-++.++.|..||.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 6899999888899999999875
No 16
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=75.36 E-value=1.4 Score=46.19 Aligned_cols=23 Identities=39% Similarity=0.856 Sum_probs=18.5
Q ss_pred eeeccccccccC-------CCCcCCcccCc
Q psy12380 148 IRYCQECAIIKP-------DRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~~kP-------~RshHC~~C~~ 170 (342)
...|..|+..-. -|-|||+.||+
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCcc
Confidence 367999986664 39999999987
No 17
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=72.64 E-value=2.4 Score=29.06 Aligned_cols=25 Identities=32% Similarity=0.772 Sum_probs=17.2
Q ss_pred ceeeccccccccCCCCcCCcc--cCcc
Q psy12380 147 YIRYCQECAIIKPDRTHHCRV--CGQC 171 (342)
Q Consensus 147 ~~~~C~~C~~~kP~RshHC~~--C~~C 171 (342)
....|.+|...-|+|+-.|+. ||.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 458999999999999999998 8765
No 18
>KOG0509|consensus
Probab=68.81 E-value=2.3 Score=43.63 Aligned_cols=58 Identities=5% Similarity=-0.138 Sum_probs=48.8
Q ss_pred ceeeccccccccCCCCcCCcccCccccCcCccCccccccccccchHHHHHHHHHHHHHH
Q psy12380 147 YIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYC 205 (342)
Q Consensus 147 ~~~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCpWi~nCIG~~N~k~F~lfl~~~~i~~ 205 (342)
....|.+|....+.+..++..+-.++..+++||+|+. +|+.+|-..|....+..++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~ 381 (600)
T KOG0509|consen 324 LTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAY 381 (600)
T ss_pred hheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999 999999887665554444333
No 19
>PF12773 DZR: Double zinc ribbon
Probab=66.04 E-value=5.3 Score=26.79 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=24.6
Q ss_pred ceeeccccccccC---CCCcCCcccCccccCcCccCcc
Q psy12380 147 YIRYCQECAIIKP---DRTHHCRVCGQCILKMDHHCPW 181 (342)
Q Consensus 147 ~~~~C~~C~~~kP---~RshHC~~C~~CVl~~DHHCpW 181 (342)
..++|..|...-+ .....|..|+.=+...+.+|+.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 3578888876555 4466788888877777777763
No 20
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=63.96 E-value=1.3 Score=29.81 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=20.8
Q ss_pred eeeccccccccCCCCcCCcccCc
Q psy12380 148 IRYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~~kP~RshHC~~C~~ 170 (342)
...|..|...-|+|+--|+.|+.
T Consensus 14 kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 14 KKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred HHHHHHhcCCCCcchhHHhhccC
Confidence 47899999999999999999864
No 21
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=62.46 E-value=2.7 Score=30.28 Aligned_cols=26 Identities=35% Similarity=0.741 Sum_probs=13.2
Q ss_pred ceeecccccc--ccCCCCcCCcccCccc
Q psy12380 147 YIRYCQECAI--IKPDRTHHCRVCGQCI 172 (342)
Q Consensus 147 ~~~~C~~C~~--~kP~RshHC~~C~~CV 172 (342)
....|..|+. .--.|-|||+.||+.|
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 4578888863 2347899999999854
No 22
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.45 E-value=6 Score=23.13 Aligned_cols=22 Identities=32% Similarity=0.889 Sum_probs=17.8
Q ss_pred eeccccccccCCCCcCCcccCc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~ 170 (342)
+.|+.|...-|.-+.-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3688888888888888888874
No 24
>KOG1842|consensus
Probab=55.27 E-value=3.2 Score=40.91 Aligned_cols=28 Identities=39% Similarity=0.971 Sum_probs=21.8
Q ss_pred CCCceeecccccc--ccCCCCcCCcccCcc
Q psy12380 144 TGGYIRYCQECAI--IKPDRTHHCRVCGQC 171 (342)
Q Consensus 144 ~~~~~~~C~~C~~--~kP~RshHC~~C~~C 171 (342)
.+..+.+|+.|.. ----|-|||+.||+-
T Consensus 176 DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~V 205 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTRRRHHCRLCGRV 205 (505)
T ss_pred CCCcccccccccchhhhHHHhhhhhhcchH
Confidence 4456799999973 346689999999984
No 25
>PF12773 DZR: Double zinc ribbon
Probab=53.38 E-value=9.4 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=21.3
Q ss_pred CceeeccccccccCCCCcCCcccC
Q psy12380 146 GYIRYCQECAIIKPDRTHHCRVCG 169 (342)
Q Consensus 146 ~~~~~C~~C~~~kP~RshHC~~C~ 169 (342)
....+|.+|....++.+..|..||
T Consensus 27 ~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 27 QSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCCcCCcCCCcCCcCccCccc
Confidence 446899999999999999999986
No 26
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=50.53 E-value=24 Score=31.85 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy12380 77 FFLLHYILFLFVWSYYKTTTTPPPPIPPD 105 (342)
Q Consensus 77 ~i~~~~l~~~~~~sy~~~~~tdPG~~p~~ 105 (342)
+++..++.++++..|..+..+|||.+-.+
T Consensus 197 liVitl~vf~LvgLyr~C~k~dPg~p~~g 225 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCWKTDPGTPENG 225 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccC
Confidence 34445566666777778888999987654
No 27
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.40 E-value=6.6 Score=27.39 Aligned_cols=36 Identities=31% Similarity=0.770 Sum_probs=26.8
Q ss_pred eccccccccCCC-------CcCCcccCccccCc-CccCccccccccc
Q psy12380 150 YCQECAIIKPDR-------THHCRVCGQCILKM-DHHCPWLHNCMSF 188 (342)
Q Consensus 150 ~C~~C~~~kP~R-------shHC~~C~~CVl~~-DHHCpWi~nCIG~ 188 (342)
-|..|+.--|+- |+-|..|..|+..+ +++|| ||-|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 355665555544 47789999999999 99998 77664
No 28
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=50.18 E-value=70 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=17.3
Q ss_pred HhcCccchhhhhcCcccCCCCCCCCC
Q psy12380 259 VLNNRTTLEAFRAPLFSYGQDKNGFS 284 (342)
Q Consensus 259 i~~n~Tt~E~~~~~~~~~~~~~npyd 284 (342)
-.++++|-|.++..+++......||+
T Consensus 78 W~~~r~tae~lk~e~~~~~~~~~~Y~ 103 (112)
T PF14015_consen 78 WIRYRATAESLKREKWLYLAGAGPYK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 36788999998876655444445554
No 29
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=39.66 E-value=13 Score=22.17 Aligned_cols=22 Identities=27% Similarity=0.893 Sum_probs=15.1
Q ss_pred eeccccccccCCCCcCCcccCc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~ 170 (342)
-.|..|...-++++-+|..|+.
T Consensus 5 W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 5 WKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EEETTTTEEEESSSSB-TTT--
T ss_pred ccCCCCcCCchHHhhhhhCcCC
Confidence 4688888888888888888763
No 30
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.26 E-value=20 Score=24.45 Aligned_cols=23 Identities=39% Similarity=0.921 Sum_probs=15.4
Q ss_pred eecccccc--ccCCCCcCCcccCcc
Q psy12380 149 RYCQECAI--IKPDRTHHCRVCGQC 171 (342)
Q Consensus 149 ~~C~~C~~--~kP~RshHC~~C~~C 171 (342)
+-|..|+. -.-.|.|||+.||+-
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~ 27 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRI 27 (57)
T ss_pred CcCcccCccccCCccccccCcCcCC
Confidence 35666652 235688999999874
No 31
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.37 E-value=22 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=21.9
Q ss_pred eecCCCceeecccccccc----CCCCcCCcccCcc
Q psy12380 141 TYTTGGYIRYCQECAIIK----PDRTHHCRVCGQC 171 (342)
Q Consensus 141 ~~~~~~~~~~C~~C~~~k----P~RshHC~~C~~C 171 (342)
..+.....+.|+.|.... ..|.++|..||.-
T Consensus 21 ~v~~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 21 EVDEAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred EECCCCCccCccCcccccccccccceEEcCCCCCE
Confidence 344555778999997544 4577888888764
No 32
>PF00751 DM: DM DNA binding domain; InterPro: IPR001275 This domain was first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in proteins from Caenorhabditis elegans []. In D. melanogaster the doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides []. These proteins are believed to function as transcription factors on downstream sex-determination genes, especially on neuroblast differentiation and yolk protein genes transcription [, ]. The DM domain binds DNA as a dimer, allowing the recognition of pseudopalindromic sequences [, , ]. The NMR analysis of the DSX DM domain [] revealed a novel zinc module containing 'intertwined' CCHC and HCCC zinc-binding sites. The recognition of the DNA requires the carboxy-terminal basic tail which contacts the minor groove of the target sequence.; GO: 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007548 sex differentiation, 0005634 nucleus; PDB: 1LPV_A.
Probab=33.70 E-value=16 Score=24.58 Aligned_cols=23 Identities=30% Similarity=0.743 Sum_probs=9.2
Q ss_pred CCcCCccc---CccccCcCc--cCcccc
Q psy12380 161 RTHHCRVC---GQCILKMDH--HCPWLH 183 (342)
Q Consensus 161 RshHC~~C---~~CVl~~DH--HCpWi~ 183 (342)
|+.+|..| |.-+...+| .|||-+
T Consensus 1 R~p~C~RCrnHG~~~~lKgHk~~C~~~~ 28 (47)
T PF00751_consen 1 RSPTCARCRNHGVIVPLKGHKRYCPFRD 28 (47)
T ss_dssp --SS-HHHHTTT---TTTT-GGG-TTTT
T ss_pred CCCcCcchhcCCcccchhhhccccCcCC
Confidence 34455555 445666677 688864
No 33
>KOG3183|consensus
Probab=33.55 E-value=20 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=14.5
Q ss_pred cCCcccCc-----cccCcCccCcccc
Q psy12380 163 HHCRVCGQ-----CILKMDHHCPWLH 183 (342)
Q Consensus 163 hHC~~C~~-----CVl~~DHHCpWi~ 183 (342)
.||..|+. =..+.+|||||..
T Consensus 24 f~Cd~C~~~FC~eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 24 FKCDGCSGIFCLEHRSYESHHCPKGL 49 (250)
T ss_pred eeeCCccchhhhccchHhhcCCCccc
Confidence 44555543 4788999999875
No 34
>KOG1729|consensus
Probab=31.97 E-value=11 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.712 Sum_probs=20.2
Q ss_pred CCCceeeccccccc---cCCCCcCCcccCcccc
Q psy12380 144 TGGYIRYCQECAII---KPDRTHHCRVCGQCIL 173 (342)
Q Consensus 144 ~~~~~~~C~~C~~~---kP~RshHC~~C~~CVl 173 (342)
.+.....|..|... --.|-|||+.||.-|=
T Consensus 164 PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC 196 (288)
T KOG1729|consen 164 PDSEATECMVCGCTEFTLSERRHHCRNCGDIVC 196 (288)
T ss_pred CcccceecccCCCccccHHHHHHHHHhcchHhh
Confidence 44566788888752 2467888888887443
No 35
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=30.14 E-value=18 Score=22.66 Aligned_cols=7 Identities=57% Similarity=1.744 Sum_probs=4.3
Q ss_pred eeccccc
Q psy12380 149 RYCQECA 155 (342)
Q Consensus 149 ~~C~~C~ 155 (342)
++|++|+
T Consensus 2 ~FCp~C~ 8 (35)
T PF02150_consen 2 RFCPECG 8 (35)
T ss_dssp -BETTTT
T ss_pred eeCCCCC
Confidence 5777775
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.37 E-value=68 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=16.1
Q ss_pred eeccccccccCCCCcCCc-ccCc
Q psy12380 149 RYCQECAIIKPDRTHHCR-VCGQ 170 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~-~C~~ 170 (342)
+.|..|...-|+--..|| .|+.
T Consensus 4 kHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CcCCcCCCcCCcchhhhCHHHHH
Confidence 678888877777777775 6654
No 37
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.91 E-value=25 Score=23.48 Aligned_cols=9 Identities=22% Similarity=1.006 Sum_probs=5.2
Q ss_pred ecccccccc
Q psy12380 150 YCQECAIIK 158 (342)
Q Consensus 150 ~C~~C~~~k 158 (342)
+|+.|+...
T Consensus 2 FCp~Cg~~l 10 (52)
T smart00661 2 FCPKCGNML 10 (52)
T ss_pred CCCCCCCcc
Confidence 666665433
No 38
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.77 E-value=18 Score=21.55 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=8.2
Q ss_pred eccccccccCC-CCcCCcccCc
Q psy12380 150 YCQECAIIKPD-RTHHCRVCGQ 170 (342)
Q Consensus 150 ~C~~C~~~kP~-RshHC~~C~~ 170 (342)
.|..|+..... ..++|..|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 46677765555 6788888763
No 39
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=28.07 E-value=3.4e+02 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q psy12380 189 SNYKFYILFLAYGAIYCVIMLSIL 212 (342)
Q Consensus 189 ~N~k~F~lfl~~~~i~~~~~~~~~ 212 (342)
.--+||-+|+.+++.+.+..+++-
T Consensus 36 ~~~~Y~~LfiVFl~AG~vLw~vM~ 59 (141)
T PRK13743 36 VSDIYFDLFIVFLTAGIVLWVIMH 59 (141)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345899999988888777665543
No 40
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.26 E-value=2.8e+02 Score=25.65 Aligned_cols=8 Identities=25% Similarity=0.766 Sum_probs=4.6
Q ss_pred eeeccccc
Q psy12380 148 IRYCQECA 155 (342)
Q Consensus 148 ~~~C~~C~ 155 (342)
.-.|..|+
T Consensus 157 rv~CghC~ 164 (256)
T PF09788_consen 157 RVICGHCS 164 (256)
T ss_pred eEECCCCC
Confidence 34566665
No 41
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=26.57 E-value=35 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.764 Sum_probs=14.6
Q ss_pred eeecccccc-ccC--CCCcCCcccCc
Q psy12380 148 IRYCQECAI-IKP--DRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~-~kP--~RshHC~~C~~ 170 (342)
.++|+.|.. ..- ...++|..|+.
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCC
Confidence 469999976 222 23567777763
No 42
>PLN00186 ribosomal protein S26; Provisional
Probab=26.02 E-value=27 Score=27.79 Aligned_cols=15 Identities=33% Similarity=0.935 Sum_probs=12.2
Q ss_pred CCcCCcccCccccCc
Q psy12380 161 RTHHCRVCGQCILKM 175 (342)
Q Consensus 161 RshHC~~C~~CVl~~ 175 (342)
+.-||..|++||.+=
T Consensus 19 ~~V~C~nCgr~vPKD 33 (109)
T PLN00186 19 KRIRCSNCGKCVPKD 33 (109)
T ss_pred cceeeCCCccccccc
Confidence 355799999999974
No 43
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=25.97 E-value=34 Score=26.34 Aligned_cols=12 Identities=25% Similarity=0.874 Sum_probs=9.0
Q ss_pred cCccCccccccc
Q psy12380 175 MDHHCPWLHNCM 186 (342)
Q Consensus 175 ~DHHCpWi~nCI 186 (342)
+-.||||++.-.
T Consensus 54 Hr~~CPwv~~~~ 65 (91)
T PF08600_consen 54 HREYCPWVNPST 65 (91)
T ss_pred ccccCCccCCcc
Confidence 336899999764
No 44
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=25.82 E-value=36 Score=24.32 Aligned_cols=22 Identities=36% Similarity=1.044 Sum_probs=19.9
Q ss_pred eeccccccccCCCCcCCcccCc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~ 170 (342)
+-|..|+..-|+-+.-|..|+.
T Consensus 5 kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 5 KACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred HHHhhccccCCCCCccCCCCCC
Confidence 6799999999999999999986
No 45
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.82 E-value=37 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=18.8
Q ss_pred CceeeccccccccCCCCcC---CcccCc
Q psy12380 146 GYIRYCQECAIIKPDRTHH---CRVCGQ 170 (342)
Q Consensus 146 ~~~~~C~~C~~~kP~RshH---C~~C~~ 170 (342)
...-+|..|+..-|...++ |..||.
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred CcEEEcccCCCeeecCCccCCcCcCcCC
Confidence 3568999999877776555 888874
No 46
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=25.64 E-value=40 Score=20.10 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=12.8
Q ss_pred eccccccccCCC-CcCCcccC
Q psy12380 150 YCQECAIIKPDR-THHCRVCG 169 (342)
Q Consensus 150 ~C~~C~~~kP~R-shHC~~C~ 169 (342)
.|..|...-... .+||+.|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~ 22 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC 22 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC
Confidence 366666555555 77887776
No 47
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=24.19 E-value=30 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.9
Q ss_pred CCcCCcccCccccCcCccCc
Q psy12380 161 RTHHCRVCGQCILKMDHHCP 180 (342)
Q Consensus 161 RshHC~~C~~CVl~~DHHCp 180 (342)
+.-+|..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIkr 38 (95)
T PRK09335 19 GYVQCDNCGRRVPRDKAVCV 38 (95)
T ss_pred ccEEeCCCCCcCcCCceEEE
Confidence 34579999999998655543
No 48
>PHA02942 putative transposase; Provisional
Probab=23.49 E-value=49 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=21.4
Q ss_pred eeecCCCceeeccccccccC---CCCcCCcccCc
Q psy12380 140 YTYTTGGYIRYCQECAIIKP---DRTHHCRVCGQ 170 (342)
Q Consensus 140 ~~~~~~~~~~~C~~C~~~kP---~RshHC~~C~~ 170 (342)
...+.......|+.|....+ .|.+.|..||.
T Consensus 317 v~V~p~yTSq~Cs~CG~~~~~l~~r~f~C~~CG~ 350 (383)
T PHA02942 317 EFVNPSYSSVSCPKCGHKMVEIAHRYFHCPSCGY 350 (383)
T ss_pred EEECCCCCCccCCCCCCccCcCCCCEEECCCCCC
Confidence 33455557788999986544 37788888775
No 49
>PTZ00172 40S ribosomal protein S26; Provisional
Probab=22.85 E-value=32 Score=27.34 Aligned_cols=15 Identities=33% Similarity=0.946 Sum_probs=12.1
Q ss_pred CCcCCcccCccccCc
Q psy12380 161 RTHHCRVCGQCILKM 175 (342)
Q Consensus 161 RshHC~~C~~CVl~~ 175 (342)
+.-||..|++||.+=
T Consensus 19 ~~V~C~nCgr~vPKD 33 (108)
T PTZ00172 19 KPVRCSNCGRCVPKD 33 (108)
T ss_pred ccEEeCCcccccccc
Confidence 345799999999984
No 50
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.51 E-value=53 Score=34.63 Aligned_cols=30 Identities=33% Similarity=0.881 Sum_probs=13.1
Q ss_pred eeccccccccCCCCcCCcccCccccCcCccCc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQCILKMDHHCP 180 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~CVl~~DHHCp 180 (342)
+||.+|...-+ ...|..||.=+..=..+|+
T Consensus 16 kFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~ 45 (645)
T PRK14559 16 RFCQKCGTSLT--HKPCPQCGTEVPVDEAHCP 45 (645)
T ss_pred ccccccCCCCC--CCcCCCCCCCCCccccccc
Confidence 45555543222 1344444444444444443
No 51
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.52 E-value=59 Score=18.64 Aligned_cols=19 Identities=32% Similarity=0.809 Sum_probs=10.2
Q ss_pred ccccccccCCCC----cCCcccC
Q psy12380 151 CQECAIIKPDRT----HHCRVCG 169 (342)
Q Consensus 151 C~~C~~~kP~Rs----hHC~~C~ 169 (342)
|.+|+..-.+|- +.|..||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 555655444443 4566665
No 52
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=21.45 E-value=71 Score=21.31 Aligned_cols=34 Identities=26% Similarity=0.706 Sum_probs=22.5
Q ss_pred Cceeecccccccc---CCCCcCCcccCc-----cccCcCccC
Q psy12380 146 GYIRYCQECAIIK---PDRTHHCRVCGQ-----CILKMDHHC 179 (342)
Q Consensus 146 ~~~~~C~~C~~~k---P~RshHC~~C~~-----CVl~~DHHC 179 (342)
..+.+|..|+..- .....+|+.|+. |..+.+.-|
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C 50 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSC 50 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCC
Confidence 4568999998666 566888999975 555554444
No 53
>COG4640 Predicted membrane protein [Function unknown]
Probab=20.92 E-value=47 Score=32.57 Aligned_cols=25 Identities=24% Similarity=0.796 Sum_probs=21.1
Q ss_pred eeccccccccCCCCcCCcccCcccc
Q psy12380 149 RYCQECAIIKPDRTHHCRVCGQCIL 173 (342)
Q Consensus 149 ~~C~~C~~~kP~RshHC~~C~~CVl 173 (342)
++|++|...+-.-+..|..||.=+-
T Consensus 2 ~fC~kcG~qk~Ed~~qC~qCG~~~t 26 (465)
T COG4640 2 KFCPKCGSQKAEDDVQCTQCGHKFT 26 (465)
T ss_pred CcccccccccccccccccccCCcCC
Confidence 6899999999999999999987443
No 54
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.01 E-value=4.1e+02 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhc
Q psy12380 247 ILIALFSYHIYLVLNNRTTLEAFRA 271 (342)
Q Consensus 247 ~~~~ll~~h~~li~~n~Tt~E~~~~ 271 (342)
.+.+++++..|--+++.++.|+++.
T Consensus 59 l~lGilifs~y~~C~~~~~~~r~n~ 83 (91)
T PHA02680 59 LLLGLFVFSMYRKCSGSMPYERLNN 83 (91)
T ss_pred HHHHHHHHHHhcccCCCceeecccC
Confidence 3445677777777778777777653
Done!