Query psy12380
Match_columns 342
No_of_seqs 183 out of 1795
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:40:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 82.1 0.78 2.7E-05 31.0 2.3 29 146-174 17-45 (56)
2 3j21_g 50S ribosomal protein L 82.1 0.85 2.9E-05 30.3 2.4 28 147-174 13-40 (51)
3 1x4u_A Zinc finger, FYVE domai 70.0 1.9 6.5E-05 31.6 1.7 26 146-171 12-39 (84)
4 1joc_A EEA1, early endosomal a 68.2 1.9 6.5E-05 34.2 1.5 27 145-171 66-94 (125)
5 1z2q_A LM5-1; membrane protein 67.8 2.3 7.7E-05 31.2 1.8 27 145-171 18-46 (84)
6 2yw8_A RUN and FYVE domain-con 66.4 2.4 8.2E-05 30.9 1.6 28 145-172 16-45 (82)
7 1wfk_A Zinc finger, FYVE domai 63.0 2.8 9.5E-05 31.1 1.4 24 147-170 8-33 (88)
8 1vfy_A Phosphatidylinositol-3- 61.7 2.6 9E-05 29.9 1.1 23 149-171 12-36 (73)
9 1dvp_A HRS, hepatocyte growth 57.2 3.5 0.00012 35.8 1.3 25 148-172 161-187 (220)
10 3t7l_A Zinc finger FYVE domain 55.0 4.6 0.00016 30.0 1.4 25 147-171 19-45 (90)
11 2dkt_A Ring finger and CHY zin 52.6 3.7 0.00013 33.3 0.6 44 143-186 78-125 (143)
12 2cr8_A MDM4 protein; ZF-ranbp 51.9 6.2 0.00021 26.0 1.5 23 148-170 11-33 (53)
13 1y02_A CARP2, FYVE-ring finger 51.8 3.6 0.00012 32.4 0.4 23 148-170 19-43 (120)
14 2c6a_A Ubiquitin-protein ligas 50.4 7.1 0.00024 25.2 1.5 23 148-170 13-35 (46)
15 3zyq_A Hepatocyte growth facto 48.0 5.6 0.00019 34.7 1.1 23 149-171 165-189 (226)
16 3u5e_m 60S ribosomal protein L 46.2 8.6 0.00029 30.2 1.8 25 147-171 92-118 (128)
17 2vrw_B P95VAV, VAV1, proto-onc 32.0 13 0.00045 34.9 1.0 31 144-174 353-386 (406)
18 3j20_Y 30S ribosomal protein S 31.2 16 0.00053 23.9 0.9 23 147-169 18-44 (50)
19 3mpx_A FYVE, rhogef and PH dom 30.2 11 0.00037 35.8 0.0 26 146-171 373-400 (434)
20 1wff_A Riken cDNA 2810002D23 p 25.7 47 0.0016 24.3 2.8 40 147-187 24-69 (85)
21 2dkt_A Ring finger and CHY zin 25.0 12 0.00042 30.2 -0.6 35 146-180 96-136 (143)
22 2jrp_A Putative cytoplasmic pr 22.5 19 0.00065 26.2 0.1 22 148-170 18-39 (81)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=82.10 E-value=0.78 Score=30.99 Aligned_cols=29 Identities=28% Similarity=0.697 Sum_probs=24.6
Q ss_pred CceeeccccccccCCCCcCCcccCccccC
Q psy12380 146 GYIRYCQECAIIKPDRTHHCRVCGQCILK 174 (342)
Q Consensus 146 ~~~~~C~~C~~~kP~RshHC~~C~~CVl~ 174 (342)
.....|.+|...-|+|+..|+.||..-||
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 34689999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.09 E-value=0.85 Score=30.35 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=24.2
Q ss_pred ceeeccccccccCCCCcCCcccCccccC
Q psy12380 147 YIRYCQECAIIKPDRTHHCRVCGQCILK 174 (342)
Q Consensus 147 ~~~~C~~C~~~kP~RshHC~~C~~CVl~ 174 (342)
....|..|...-|+++..|+.||.--++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4689999999999999999999876544
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.97 E-value=1.9 Score=31.60 Aligned_cols=26 Identities=19% Similarity=0.602 Sum_probs=19.2
Q ss_pred Cceeeccccccc--cCCCCcCCcccCcc
Q psy12380 146 GYIRYCQECAII--KPDRTHHCRVCGQC 171 (342)
Q Consensus 146 ~~~~~C~~C~~~--kP~RshHC~~C~~C 171 (342)
.....|..|+.. --.|-|||+.||+-
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcE
Confidence 345788888742 45789999999873
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.22 E-value=1.9 Score=34.21 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=20.1
Q ss_pred CCceeeccccccc--cCCCCcCCcccCcc
Q psy12380 145 GGYIRYCQECAII--KPDRTHHCRVCGQC 171 (342)
Q Consensus 145 ~~~~~~C~~C~~~--kP~RshHC~~C~~C 171 (342)
+.....|..|... --.|-|||+.||+-
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeE
Confidence 3456789999743 35689999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.80 E-value=2.3 Score=31.18 Aligned_cols=27 Identities=33% Similarity=0.768 Sum_probs=19.6
Q ss_pred CCceeeccccccc--cCCCCcCCcccCcc
Q psy12380 145 GGYIRYCQECAII--KPDRTHHCRVCGQC 171 (342)
Q Consensus 145 ~~~~~~C~~C~~~--kP~RshHC~~C~~C 171 (342)
+.....|..|+.. --.|-|||+.||+-
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcE
Confidence 3455789999742 34689999999874
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=66.42 E-value=2.4 Score=30.90 Aligned_cols=28 Identities=32% Similarity=0.769 Sum_probs=19.9
Q ss_pred CCceeecccccc--ccCCCCcCCcccCccc
Q psy12380 145 GGYIRYCQECAI--IKPDRTHHCRVCGQCI 172 (342)
Q Consensus 145 ~~~~~~C~~C~~--~kP~RshHC~~C~~CV 172 (342)
+.....|..|+. ---.|-|||+.||+-+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEE
Confidence 344578999974 2346899999998743
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.96 E-value=2.8 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=18.3
Q ss_pred ceeeccccccc--cCCCCcCCcccCc
Q psy12380 147 YIRYCQECAII--KPDRTHHCRVCGQ 170 (342)
Q Consensus 147 ~~~~C~~C~~~--kP~RshHC~~C~~ 170 (342)
....|..|+.. --.|-|||+.||+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCC
Confidence 45689999742 3468899999987
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.73 E-value=2.6 Score=29.93 Aligned_cols=23 Identities=39% Similarity=0.878 Sum_probs=17.1
Q ss_pred eeccccccc--cCCCCcCCcccCcc
Q psy12380 149 RYCQECAII--KPDRTHHCRVCGQC 171 (342)
Q Consensus 149 ~~C~~C~~~--kP~RshHC~~C~~C 171 (342)
..|..|+.. .-.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 468888742 34688999999874
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.19 E-value=3.5 Score=35.78 Aligned_cols=25 Identities=44% Similarity=1.000 Sum_probs=18.3
Q ss_pred eeeccccccc--cCCCCcCCcccCccc
Q psy12380 148 IRYCQECAII--KPDRTHHCRVCGQCI 172 (342)
Q Consensus 148 ~~~C~~C~~~--kP~RshHC~~C~~CV 172 (342)
...|..|+.. ---|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3689999732 346899999998743
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.04 E-value=4.6 Score=29.95 Aligned_cols=25 Identities=36% Similarity=0.921 Sum_probs=18.0
Q ss_pred ceeecccccc--ccCCCCcCCcccCcc
Q psy12380 147 YIRYCQECAI--IKPDRTHHCRVCGQC 171 (342)
Q Consensus 147 ~~~~C~~C~~--~kP~RshHC~~C~~C 171 (342)
....|..|+. ---.|-|||+.||+-
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCE
Confidence 3467988974 224588999999873
No 11
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=52.65 E-value=3.7 Score=33.30 Aligned_cols=44 Identities=30% Similarity=0.616 Sum_probs=28.5
Q ss_pred cCCCceeeccccccccCCC-CcCCcccCccccC---cCccCccccccc
Q psy12380 143 TTGGYIRYCQECAIIKPDR-THHCRVCGQCILK---MDHHCPWLHNCM 186 (342)
Q Consensus 143 ~~~~~~~~C~~C~~~kP~R-shHC~~C~~CVl~---~DHHCpWi~nCI 186 (342)
+......||.+|+.+.++| .+||..||.|... -=-||.==|.|+
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 3445567999999886543 5788888888664 223555555554
No 12
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=51.86 E-value=6.2 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=18.7
Q ss_pred eeeccccccccCCCCcCCcccCc
Q psy12380 148 IRYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~~kP~RshHC~~C~~ 170 (342)
.-.|.+|+..-||-..||..|-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCC
T ss_pred eeecccccccCCCccchhHHHHH
Confidence 46799999888998888887754
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.81 E-value=3.6 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=17.0
Q ss_pred eeecccccc--ccCCCCcCCcccCc
Q psy12380 148 IRYCQECAI--IKPDRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~--~kP~RshHC~~C~~ 170 (342)
...|..|+. .-..|-|||+.||+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred cCcccCcCCccccccccccCCCCCC
Confidence 357888874 23568999999987
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=50.37 E-value=7.1 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=19.1
Q ss_pred eeeccccccccCCCCcCCcccCc
Q psy12380 148 IRYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~~kP~RshHC~~C~~ 170 (342)
.-.|.+|+..-||-..||..|-.
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCC
T ss_pred eEecccccccCCCccchhhHHHh
Confidence 46799999999999999887743
No 15
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.03 E-value=5.6 Score=34.74 Aligned_cols=23 Identities=43% Similarity=1.078 Sum_probs=16.8
Q ss_pred eecccccc-c-cCCCCcCCcccCcc
Q psy12380 149 RYCQECAI-I-KPDRTHHCRVCGQC 171 (342)
Q Consensus 149 ~~C~~C~~-~-kP~RshHC~~C~~C 171 (342)
..|..|+. . ---|-|||+.||+.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCE
Confidence 57999973 2 23478999999874
No 16
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=46.17 E-value=8.6 Score=30.17 Aligned_cols=25 Identities=32% Similarity=0.778 Sum_probs=21.8
Q ss_pred ceeeccccccccCCCCcCCc--ccCcc
Q psy12380 147 YIRYCQECAIIKPDRTHHCR--VCGQC 171 (342)
Q Consensus 147 ~~~~C~~C~~~kP~RshHC~--~C~~C 171 (342)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45899999999999999999 48764
No 17
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=31.97 E-value=13 Score=34.93 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCceeecccccccc---CCCCcCCcccCccccC
Q psy12380 144 TGGYIRYCQECAIIK---PDRTHHCRVCGQCILK 174 (342)
Q Consensus 144 ~~~~~~~C~~C~~~k---P~RshHC~~C~~CVl~ 174 (342)
....+.+|..|+..- -.|-|||+.||..|-+
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 456789999998543 4688999988764433
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.18 E-value=16 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.693 Sum_probs=13.7
Q ss_pred ceeecccccc--cc-C-CCCcCCcccC
Q psy12380 147 YIRYCQECAI--IK-P-DRTHHCRVCG 169 (342)
Q Consensus 147 ~~~~C~~C~~--~k-P-~RshHC~~C~ 169 (342)
..++|+.|.. .. + ...++|..|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 3589999975 11 1 2245676665
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.22 E-value=11 Score=35.80 Aligned_cols=26 Identities=31% Similarity=0.738 Sum_probs=0.0
Q ss_pred Cceeeccccccc--cCCCCcCCcccCcc
Q psy12380 146 GYIRYCQECAII--KPDRTHHCRVCGQC 171 (342)
Q Consensus 146 ~~~~~C~~C~~~--kP~RshHC~~C~~C 171 (342)
.....|..|... --.|-|||+.||+.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ----------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 345779888742 23478999999873
No 20
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.74 E-value=47 Score=24.28 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=25.9
Q ss_pred ceeeccccccccCC-CCcCCcccCc--cc---cCcCccCcccccccc
Q psy12380 147 YIRYCQECAIIKPD-RTHHCRVCGQ--CI---LKMDHHCPWLHNCMS 187 (342)
Q Consensus 147 ~~~~C~~C~~~kP~-RshHC~~C~~--CV---l~~DHHCpWi~nCIG 187 (342)
....|..|+..--. -..+|+ |+. |- +--||.|++--.=.|
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 35789999865554 467886 654 43 345999987554433
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=24.95 E-value=12 Score=30.24 Aligned_cols=35 Identities=26% Similarity=0.607 Sum_probs=23.6
Q ss_pred Cceeecccccc---ccCCCCcCCcccCcccc--CcC-ccCc
Q psy12380 146 GYIRYCQECAI---IKPDRTHHCRVCGQCIL--KMD-HHCP 180 (342)
Q Consensus 146 ~~~~~C~~C~~---~kP~RshHC~~C~~CVl--~~D-HHCp 180 (342)
...-.|..|.+ -+..--.||..||.|+. ..| |.|.
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 34456666653 34566899999999954 344 7774
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.53 E-value=19 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=15.5
Q ss_pred eeeccccccccCCCCcCCcccCc
Q psy12380 148 IRYCQECAIIKPDRTHHCRVCGQ 170 (342)
Q Consensus 148 ~~~C~~C~~~kP~RshHC~~C~~ 170 (342)
...|..|+..-++.+ .|..|++
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 456777777666666 7777765
Done!