RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12380
(342 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 123 bits (311), Expect = 2e-34
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 24/186 (12%)
Query: 88 VWSYYKTTTTPPPPIPPDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGY 147
+WSY+KT T P +P + E++E E+ +
Sbjct: 1 LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDEL------------------- 41
Query: 148 IRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVI 207
++C C IIKP R+HHCRVC +C+L+ DHHCPWL+NC+ N+K+++LFL Y +Y ++
Sbjct: 42 -KFCSTCNIIKPPRSHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLIL 100
Query: 208 MLSILPI---ELYKYWWQDKVLDEALLYHYTILSISAVIFFAILIALFSYHIYLVLNNRT 264
+L + L + L +L +L +S F L L +H+YL+L N T
Sbjct: 101 LLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSL-FFLLFLSFLLFFHLYLILKNIT 159
Query: 265 TLEAFR 270
T E +
Sbjct: 160 TYEYIK 165
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 125 bits (315), Expect = 2e-33
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 44 IPLLTAVLVICYSYCCYIFLYCDKSLNEQEPLTFFLLHYILFLFVWSYYKTTTTPPPPIP 103
I L ++ Y+ + SL + F IL L +SY + P +
Sbjct: 32 IGLFLLSRIVVYTLLVIVKSL---SLVVLFIILF---IVILVLASFSYLLLLVSDPGYLG 85
Query: 104 PDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGYIRYCQECAIIKPDRTH 163
+ LS + + G +C C I KP R+H
Sbjct: 86 ENITLS--GYRETIS-------------------RLLDDGKFGTENFCSTCNIYKPPRSH 124
Query: 164 HCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQD 223
HC +C +C+LK DHHCPW++NC+ F NY+F+ FL Y + +++L + +
Sbjct: 125 HCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIR 184
Query: 224 KVLDEALLYHYTILSISAVIFFAILIALFSYHIYLVLNNRTTLEAF 269
A+ + S+ V+FF I L + IYL+LNN TT+E
Sbjct: 185 HDTSLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFI 230
>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 33.4 bits (77), Expect = 0.15
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 146 GYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCP-WL 182
GY+ YC +C + C C K P WL
Sbjct: 242 GYVYYCPKCLYREEVEGLPPEECPVCGGKFGTAGPLWL 279
>gnl|CDD|184967 PRK15005, PRK15005, universal stress protein F; Provisional.
Length = 144
Score = 30.5 bits (69), Expect = 0.53
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 304 FPVFSSLGCGWSFDFPKKNDI--EAKLKQEE-----DVPTDNTET 341
P ++SLG +S + P +D+ EAK + EE +PTD
Sbjct: 44 LPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHV 88
>gnl|CDD|226812 COG4377, COG4377, Predicted membrane protein [Function unknown].
Length = 258
Score = 31.4 bits (71), Expect = 0.59
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 198 LAYGAIYCVIMLSILPIELYKYWWQDKVLDEALLYHYTILSISAVIFFA-ILIALFSYHI 256
+ AI I L PI WW + L +L + AV FF I H+
Sbjct: 7 MTIHAIITAIALLAFPIGSI--WWAKRKYQINL----AVLGLGAVAFFVFSQILEKLVHV 60
Query: 257 YLVLNNRTTLEAFRAPL 273
Y++ N +T PL
Sbjct: 61 YILQKNGSTALLQDHPL 77
>gnl|CDD|234967 PRK01642, cls, cardiolipin synthetase; Reviewed.
Length = 483
Score = 30.1 bits (69), Expect = 1.7
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 234 YTILSISAVIFFAILIALFSYHIYLVLNNRT 264
YT+LS ++ + +LIA + I ++ RT
Sbjct: 2 YTVLSWLGILLYWLLIAGVTLRI--LMKRRT 30
>gnl|CDD|145259 pfam01982, CTP-dep_RFKase, Domain of unknown function DUF120. This
domain is a CTP-dependent riboflavin kinase (RFK), found
in archaea, that catalyzes the phosphorylation of
riboflavin to form flavin mononucleotide in riboflavin
biosynthesis EC:2.7.1.26. Its structure resembles a RIFT
barrel, structurally similar to but topologically
distinct from bacterial and eukaryotic examples. The
N-terminal is a winged helix-turn-helix DNA-binding
domain, and the C-terminal half is most similar in
sequence to a group of cradle-loop barrels.
Archaeoglobus fulgidus ribovlavin kinase has this domain
attached to pfam00325.
Length = 121
Score = 28.7 bits (65), Expect = 2.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 153 ECAIIKPDRTHH 164
AI+ P+RTHH
Sbjct: 81 PGAIVFPERTHH 92
>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P).
Length = 167
Score = 28.8 bits (64), Expect = 3.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 96 TTPPPPIPPDFFLSAATMNKIWEADENCEKI 126
T PPPP+ N+ +A C KI
Sbjct: 33 TLPPPPVQSH--------NRPAKATAYCRKI 55
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finger is named
after four proteins that it has been found in: Fab1,
YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been
shown to bind two Zn++ ions. The FYVE finger has eight
potential zinc coordinating cysteine positions. Many
members of this family also include two histidines in a
motif R+HHC+XCG, where + represents a charged residue
and X any residue. We have included members which do not
conserve these histidine residues but are clearly
related.
Length = 68
Score = 27.0 bits (60), Expect = 3.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 161 RTHHCRVCGQCI 172
R HHCR CG+
Sbjct: 24 RRHHCRNCGKVF 35
>gnl|CDD|227529 COG5202, COG5202, Predicted membrane protein [Function unknown].
Length = 512
Score = 29.2 bits (65), Expect = 3.7
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 172 ILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIE-LYKYWWQDKVLDEAL 230
ILK + HN S S ILF +G + V IL L+ Y L
Sbjct: 38 ILKRNPTRIRTHNLFSIS----LILFYLFGVRHLVSGAYILASISLFTYL---------L 84
Query: 231 LYHYTILSISAVIFFAILIALFSYHIYLVLNNRT 264
Y Y + V+F IL +H + R
Sbjct: 85 RYFYRSAYMPTVLFIVILGHYKIFHAAQLFEERI 118
>gnl|CDD|217740 pfam03803, Scramblase, Scramblase. Scramblase is palmitoylated and
contains a potential protein kinase C phosphorylation
site. Scramblase exhibits Ca2+-activated phospholipid
scrambling activity in vitro. There are also possible
SH3 and WW binding motifs. Scramblase is involved in the
redistribution of phospholipids after cell activation or
injury.
Length = 223
Score = 28.5 bits (64), Expect = 4.6
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 9/38 (23%)
Query: 285 LGKRNNFLQVFGDKKWKWFFPVFSSLGCGWSFDFPKKN 322
N L +FG CG +DFP K
Sbjct: 137 DADGNQVLLIFGP---------CCKCSCGGDWDFPVKT 165
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.0 bits (65), Expect = 5.1
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 207 IMLSILPIELYKYWWQDK--VLDEAL---LYHYTILSISAVIFFAILIALFSYHIYLVLN 261
I+L+ + + Y W+Q VL ++ ++ Y S A +FF IL+ ++ Y
Sbjct: 141 ILLNYILKKFYGDWYQSVAIVLIGSVASWIFGYLGFS-FASLFFIILVTMYVYRT----C 195
Query: 262 NRTTLEAFRAPLFSYGQDKNGFSLGKRNNFLQVFGDKKWKWFFPVFSSL 310
+ R + ++ + + +L F K W P S
Sbjct: 196 IKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFLQKFWPIIEPSISQQ 244
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins
to membrane lipids via interaction with
phosphatidylinositol-3-phosphate, PI3P; present in Fab1,
YOTB, Vac1, and EEA1;.
Length = 57
Score = 25.9 bits (57), Expect = 7.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 161 RTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYG 201
R HHCR CG+ C S+ + + + G
Sbjct: 17 RRHHCRNCGRIF------------CSKCSSNRIPLPSMGGG 45
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.0 bits (62), Expect = 7.7
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 151 CQECAIIKPD----RTHHCRVCGQCILKM 175
C+EC I+ D T VC C M
Sbjct: 119 CKECLQIELDDELEDTFGISVCRSCRHSM 147
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 27.9 bits (63), Expect = 8.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 317 DFPKKNDIEAKLKQEEDVPT 336
D P+ IE +L+ ++P
Sbjct: 151 DAPRCFAIEERLRYRMNIPV 170
>gnl|CDD|176972 CHL00031, psbT, photosystem II protein T.
Length = 33
Score = 25.0 bits (55), Expect = 8.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 228 EALLYHYTILSISAVIFFAI 247
EAL+Y + ++S +IFFAI
Sbjct: 2 EALVYTFLLVSTLGIIFFAI 21
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1.
The FYVE zinc finger is named after four proteins where
it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1.
The FYVE finger has been shown to bind two Zn2+ ions.
The FYVE finger has eight potential zinc coordinating
cysteine positions. The FYVE finger is structurally
related to the PHD finger and the RING finger. Many
members of this family also include two histidines in a
motif R+HHC+XCG, where + represents a charged residue
and X any residue. The FYVE finger functions in the
membrane recruitment of cytosolic proteins by binding to
phosphatidylinositol 3-phosphate (PI3P), which is
prominent on endosomes. The R+HHC+XCG motif is critical
for PI3P binding.
Length = 68
Score = 25.9 bits (57), Expect = 9.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 160 DRTHHCRVCGQ 170
R HHCR CG+
Sbjct: 24 KRRHHCRNCGR 34
>gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and
Integrins.
Length = 47
Score = 25.2 bits (55), Expect = 9.8
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 168 CGQCILKMDHHCPW---LHNCMSFS 189
C +C+L D +C W C S
Sbjct: 8 CSECLLARDPYCAWCSSQGRCTSGE 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.479
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,861,855
Number of extensions: 1733482
Number of successful extensions: 3065
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3042
Number of HSP's successfully gapped: 100
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)