RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12380
(342 letters)
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk
{Methanococcus jannaschii [TaxId: 2190]}
Length = 131
Score = 32.7 bits (75), Expect = 0.019
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 112 TMNKIWEADENCEKIDAILVP----------KARRLPIYTYTTGGYIRYCQECAIIKPDR 161
T+N + + + K I + LPI I + AI+ P +
Sbjct: 42 TLNLKLDREFDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGNKKI----DGAIVVPKK 97
Query: 162 THH 164
T+H
Sbjct: 98 TYH 100
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 131
Score = 29.2 bits (66), Expect = 0.29
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 153 ECAIIKPDRTHH 164
C +I P+RT +
Sbjct: 90 PCFVIMPERTVY 101
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4
(Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Length = 199
Score = 29.0 bits (64), Expect = 0.69
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 89 WSYYKTTTTPPPPIPPDFFLSAATMNKIWEADENCEKIDAILVPKARRLPIYTYTTGGYI 148
Y T I P F+ + E + V + P + Y
Sbjct: 91 VMRYTTAGQLLNIISPREFVDFSY----TVGYEEGLLSCGVSVEWSETRPEFVRG---YN 143
Query: 149 RYCQECAIIKPDRTHHCRV 167
C + D +
Sbjct: 144 HPCGWFCVPLKDSPSQSLL 162
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma)
subunit {Escherichia coli [TaxId: 562]}
Length = 216
Score = 27.7 bits (61), Expect = 1.7
Identities = 8/86 (9%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 183 HNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQDKVLDEALLYHYTILSISAV 242
H Y + + + + +L + + +++ ++ + + Y I + + +
Sbjct: 100 HKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI 159
Query: 243 IFFAILIALFSYHIYLVLNNRTTLEA 268
I ++ H+Y+ + +++
Sbjct: 160 ILIHAIL----IHMYMAFWVKGSIKG 181
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 56
Score = 25.4 bits (56), Expect = 1.8
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 150 YCQECAII---KPDRTHHCRVCGQCI---LKMDHHC 179
+C+ C I + HC C C+ L+ H C
Sbjct: 19 HCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 26.2 bits (57), Expect = 1.8
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 151 CQECAII--KPDRTHHCRVCGQCILKMDHHC 179
C CA+ + + C+ CG+ + C
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRA---FCNGC 39
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 26.7 bits (58), Expect = 3.6
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 129 ILVPKARRLPI-YTYTTGGY-IRYCQECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCM 186
+ +P R+ + G+ + A+ P+R + V +
Sbjct: 36 MKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLK 95
Query: 187 SFSNY 191
Sbjct: 96 LPVII 100
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.2 bits (52), Expect = 5.1
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 161 RTHHCRVCGQCI 172
R C C +
Sbjct: 15 RKQTCLDCKKNF 26
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 25.7 bits (56), Expect = 5.3
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 153 ECAIIKPDRTHHCRVCGQCILKMDHHCPWLHNCMSFSNYKFYILFLAYGAIYCVIMLSIL 212
II P RT + ++ P + F + + +S+L
Sbjct: 42 TGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL 101
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 26.1 bits (56), Expect = 6.7
Identities = 20/268 (7%), Positives = 51/268 (19%), Gaps = 23/268 (8%)
Query: 1 MGTTKRYKIGTYVNDNILVHPCRYPGIPSTLFISSHSYELIRSIPLLTAVLVICYSYCCY 60
+ T Y + P + + S T +++
Sbjct: 53 LALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKK 112
Query: 61 IFLYCDKSLNEQEPLTFFLLHYILFLFVWSYYKTTTTPPPPIPPDFFLSAATMNKIWEAD 120
E+E L V T I +KI
Sbjct: 113 RNHRTIGITIEEESRLAKESDLPLVFPVREEAIVMTKSFSMI---LLSLMFLADKIAGNS 169
Query: 121 ENCEKIDAILVPKARRLPIYTYTTGGYIRYCQECAIIKPDRTHHCRVCGQCILKMDHHCP 180
P+ + + + + ++M
Sbjct: 170 TERFSELVGYSPEFFDISWKVIEKIDLKEHDHFVFLGMSEFFGVSLESALKCIEMSLTFS 229
Query: 181 WLHNCMSFSNYKFYILFLAYGAIYCVIMLSILPIELYKYWWQDKVLDEALLYHYTILSIS 240
++ + + + + L + + ++ E T+L +
Sbjct: 230 EAYSTLEYRHGPKAL--------VKKGTLVFMQKVSGMDEQEKRLRKELESLGATVLEVG 281
Query: 241 ------------AVIFFAILIALFSYHI 256
+ + + Y
Sbjct: 282 EGGDIPVSNDWKSAFLRTVPAQILGYQK 309
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.143 0.479
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,841
Number of extensions: 69407
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 39
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)