Query psy12383
Match_columns 152
No_of_seqs 144 out of 913
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:46:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 9.3E-54 2E-58 352.1 9.0 150 2-151 111-264 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 5.1E-53 1.1E-57 344.0 10.0 147 3-152 93-249 (250)
3 PTZ00251 fatty acid elongase; 100.0 6.6E-51 1.4E-55 336.0 7.5 147 2-152 113-269 (272)
4 KOG3072|consensus 100.0 1.8E-42 3.8E-47 284.4 5.1 143 2-148 120-268 (282)
5 COG4858 Uncharacterized membra 41.5 1E+02 0.0022 24.9 6.0 18 74-91 146-164 (226)
6 PRK00753 psbL photosystem II r 28.1 1E+02 0.0022 18.3 3.0 27 116-142 12-38 (39)
7 CHL00038 psbL photosystem II p 25.7 1.4E+02 0.0031 17.6 3.3 27 116-142 11-37 (38)
8 PF02419 PsbL: PsbL protein; 15.8 1.9E+02 0.0041 17.0 2.4 26 117-142 11-36 (37)
9 KOG2285|consensus 15.5 59 0.0013 29.9 0.4 19 29-47 563-581 (777)
10 PF12643 MazG-like: MazG-like 14.3 2.2E+02 0.0048 20.0 3.0 25 60-84 35-59 (98)
No 1
>KOG3071|consensus
Probab=100.00 E-value=9.3e-54 Score=352.06 Aligned_cols=150 Identities=41% Similarity=0.646 Sum_probs=141.6
Q ss_pred eeeehhhhHhHhhHHHHHHHHHhcCCCceeEeeeecccchheeeeeeeeeccCccchhhhhhhHHHHHHHHHHHHHHhhC
Q psy12383 2 LCVWYYYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSLGAVNSFVHAIMYTYYLLSALD 81 (152)
Q Consensus 2 ~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g 81 (152)
+++|+||+||+.|++||+|+|||||+||+||||+|||++|+..+|.++++.+||+.++.+.+|++||++||+||++||+|
T Consensus 111 ~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G 190 (274)
T KOG3071|consen 111 FWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFG 190 (274)
T ss_pred HHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccch-hhHhhhhhhhhhhhhhhhhhhhhcc-ccc-CCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q psy12383 82 KKFTE-AKWKRYITQLQMVQFVCLIVHFSLP-FLF-PCGYPLW-PCAIIVPQYIFMLALFYDFYRKAYGNKPKQ 151 (152)
Q Consensus 82 ~~~~~-~~~k~~iT~~QivQF~~~~~~~~~~-~~~-~C~~~~~-~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~k~ 151 (152)
||+++ +|||+++|.+|++||++..+|..+. ++. ||+.|.+ +.+.+.++.++++.||.|||+|+|.|++|+
T Consensus 191 ~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~ 264 (274)
T KOG3071|consen 191 PRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKK 264 (274)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99998 9999999999999999999999888 554 8999998 777889999999999999999999996553
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.1e-53 Score=343.99 Aligned_cols=147 Identities=48% Similarity=0.852 Sum_probs=136.0
Q ss_pred eeehhhhHhHhhHHHHHHHHHhcCCCceeEeeeecccchheeeeeeeeeccCccchhhhhhhHHHHHHHHHHHHHHhhCC
Q psy12383 3 CVWYYYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSLGAVNSFVHAIMYTYYLLSALDK 82 (152)
Q Consensus 3 ~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~ 82 (152)
|.|+|++||++|++||+|+||||| |+||||||||+++++.+|.++++.++|+.++++.+|++||++||+||+++|+|.
T Consensus 93 ~~~~fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~ 170 (250)
T PF01151_consen 93 WYWLFYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSALGI 170 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578899999999999999999999 799999999999999999999998889999999999999999999999999997
Q ss_pred c-cchhhHhhhhhhhhhhhhhhhhhhhhccccc------CC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q psy12383 83 K-FTEAKWKRYITQLQMVQFVCLIVHFSLPFLF------PC---GYPLWPCAIIVPQYIFMLALFYDFYRKAYGNKPKQT 152 (152)
Q Consensus 83 ~-~~~~~~k~~iT~~QivQF~~~~~~~~~~~~~------~C---~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~k~~ 152 (152)
| .+ +||||+||.+||+||++++++..+.... +| ++|......+.++++++++||.|||+|+|.+||||+
T Consensus 171 ~~~~-~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k 249 (250)
T PF01151_consen 171 RKVP-RWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKKKKKK 249 (250)
T ss_pred ccch-hHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 6 44 5999999999999999999988777654 89 556899999999999999999999999999987764
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=6.6e-51 Score=336.00 Aligned_cols=147 Identities=27% Similarity=0.386 Sum_probs=127.4
Q ss_pred eeeehhhhHhHhhHHHHHHHHHhcCCCceeEeeeecccchheeeeeeeeeccCccchh-hhhhhHHHHHHHHHHHHHHhh
Q psy12383 2 LCVWYYYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVS-LGAVNSFVHAIMYTYYLLSAL 80 (152)
Q Consensus 2 ~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~-~~~~N~~VH~iMY~YY~l~a~ 80 (152)
.|+|+|++||++|++||+|+||||| |+||||||||++|++.+|.++. ++++..+ ++.+|++||++||+||+++|+
T Consensus 113 ~~~~~f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~lsa~ 188 (272)
T PTZ00251 113 VAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFALSEA 188 (272)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999 7999999999999999999763 4444433 599999999999999999999
Q ss_pred CCccchhhHhhhhhhhhhhhhhhhhhhhhcccc--------cCCCCCh-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q psy12383 81 DKKFTEAKWKRYITQLQMVQFVCLIVHFSLPFL--------FPCGYPL-WPCAIIVPQYIFMLALFYDFYRKAYGNKPKQ 151 (152)
Q Consensus 81 g~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~--------~~C~~~~-~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~k~ 151 (152)
|+|.+..||||+||.+||+||++++++..+.+. .+|+.+. .....+.++++++++||.|||+|+|++|||+
T Consensus 189 g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~ 268 (272)
T PTZ00251 189 GFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKA 268 (272)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 997321369999999999999999988776643 3699877 6777778899999999999999999998776
Q ss_pred C
Q psy12383 152 T 152 (152)
Q Consensus 152 ~ 152 (152)
.
T Consensus 269 ~ 269 (272)
T PTZ00251 269 K 269 (272)
T ss_pred C
Confidence 3
No 4
>KOG3072|consensus
Probab=100.00 E-value=1.8e-42 Score=284.36 Aligned_cols=143 Identities=29% Similarity=0.414 Sum_probs=128.0
Q ss_pred eeeehhhhHhHhhHHHHHHHHHhcCCCceeEeeeecccchheeeeeeeeeccCccchhhhhhhHHHHHHHHHHHHHHhhC
Q psy12383 2 LCVWYYYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSLGAVNSFVHAIMYTYYLLSALD 81 (152)
Q Consensus 2 ~~~~~f~lsK~~El~DTvf~VLrKk~~qlsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g 81 (152)
.|+|+|.+||..|++||+|+|||||| ++|||||||+.++++.|.++....+ ...+++.+|.+||++||+||+++|+|
T Consensus 120 fW~~~fvlSK~~ElgDT~FiVLRKrP--liFlHWYHHi~~~iy~~~~y~~~~a-~~rw~i~mNy~vHa~MY~YY~lrsl~ 196 (282)
T KOG3072|consen 120 FWSWLFVLSKAPELGDTIFIVLRKRP--LIFLHWYHHILVLIYAWHSYIEKVA-WGRWFIWMNYLVHAFMYSYYALRSLG 196 (282)
T ss_pred HHHHHHHHHhhhhhhceeEEEeccCc--cEEEechhhheeeeeeeeecccCCc-CceEEEEEehhHHHHHHHHHHHHHcC
Confidence 48899999999999999999999986 9999999999999999999885544 45569999999999999999999999
Q ss_pred CccchhhHhhhhhhhhhhhhhhhhhhhhccc---c-c--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy12383 82 KKFTEAKWKRYITQLQMVQFVCLIVHFSLPF---L-F--PCGYPLWPCAIIVPQYIFMLALFYDFYRKAYGNK 148 (152)
Q Consensus 82 ~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~---~-~--~C~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~ 148 (152)
.|+|| +..+.||.+||+||+++........ . . +|+.+.....++..++++|++||+|||.++|+++
T Consensus 197 ir~Pk-~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~ 268 (282)
T KOG3072|consen 197 IRLPK-SVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKK 268 (282)
T ss_pred CCCCh-HHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99996 8899999999999999876433222 1 2 3999999999999999999999999999999996
No 5
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=41.50 E-value=1e+02 Score=24.90 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=9.2
Q ss_pred HHHHHhhCCccch-hhHhh
Q psy12383 74 YYLLSALDKKFTE-AKWKR 91 (152)
Q Consensus 74 YY~l~a~g~~~~~-~~~k~ 91 (152)
||+-+-.|.+.++ .+||-
T Consensus 146 ~y~yr~~ad~sqr~~~~K~ 164 (226)
T COG4858 146 YYAYRMRADNSQRPGTWKY 164 (226)
T ss_pred HHHHHhhcccccCCchHHH
Confidence 4444555555554 45663
No 6
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=28.06 E-value=1e+02 Score=18.30 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12383 116 CGYPLWPCAIIVPQYIFMLALFYDFYR 142 (152)
Q Consensus 116 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 142 (152)
.+.++..++++........+||.++|.
T Consensus 12 VELNRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 12 VELNRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred ceechhhHHHHHHHHHHHHHHHHhhcc
Confidence 445677888899889999999998874
No 7
>CHL00038 psbL photosystem II protein L
Probab=25.70 E-value=1.4e+02 Score=17.59 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12383 116 CGYPLWPCAIIVPQYIFMLALFYDFYR 142 (152)
Q Consensus 116 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 142 (152)
.+.++..++++........+||.+++.
T Consensus 11 VELNRTSLy~GLLlifvl~vlfssyff 37 (38)
T CHL00038 11 VELNRTSLYWGLLLIFVLAVLFSNYFF 37 (38)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 445577788888888899999998874
No 8
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=15.77 E-value=1.9e+02 Score=16.99 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12383 117 GYPLWPCAIIVPQYIFMLALFYDFYR 142 (152)
Q Consensus 117 ~~~~~~~~~~~~~~~s~l~LF~~Fy~ 142 (152)
+.++.-.+++.......-+||.+++.
T Consensus 11 ELNRTSLY~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 11 ELNRTSLYWGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp E--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhHHHHHHHHHHHHHHhhhhhc
Confidence 34456678888888888999998875
No 9
>KOG2285|consensus
Probab=15.49 E-value=59 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=15.0
Q ss_pred ceeEeeeecccchheeeee
Q psy12383 29 QASFLHVYHHTGMIITGLI 47 (152)
Q Consensus 29 qlsfLHvyHH~~~~~~~w~ 47 (152)
.-.-||||||.+.-.+++.
T Consensus 563 sgrkl~w~h~msNG~itf~ 581 (777)
T KOG2285|consen 563 SGRKLQWYHHMSNGTITFV 581 (777)
T ss_pred CccchhhhhhccCCeeEee
Confidence 4567999999998777654
No 10
>PF12643 MazG-like: MazG-like family
Probab=14.26 E-value=2.2e+02 Score=20.03 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhCCcc
Q psy12383 60 LGAVNSFVHAIMYTYYLLSALDKKF 84 (152)
Q Consensus 60 ~~~~N~~VH~iMY~YY~l~a~g~~~ 84 (152)
-.+.+.+..+++|+|-+...+|..+
T Consensus 35 e~i~deLAdvii~~ylLa~rLGid~ 59 (98)
T PF12643_consen 35 EAIKDELADVIIYCYLLADRLGIDF 59 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 5789999999999999999999984
Done!