Query psy12383
Match_columns 152
No_of_seqs 144 out of 913
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:46:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 34.6 63 0.0021 18.1 4.1 28 115-142 9-36 (37)
2 2wb6_A AFV1-102; archaeal viru 10.8 1.3E+02 0.0043 20.7 1.8 15 12-26 40-54 (130)
3 1m5a_B Insulin B chain; alpha 9.2 1.7E+02 0.0058 15.7 1.6 14 13-26 9-22 (30)
4 3vw7_A Proteinase-activated re 8.5 1.6E+02 0.0056 23.3 2.0 16 59-74 435-450 (484)
5 4dkl_A MU-type opioid receptor 7.8 2.2E+02 0.0076 22.2 2.5 15 60-74 427-441 (464)
6 2ks9_A Substance-P receptor; w 7.0 2.6E+02 0.0089 21.1 2.5 15 60-74 293-307 (364)
7 3eml_A Human adenosine A2A rec 6.7 2.6E+02 0.009 22.0 2.5 16 59-74 437-452 (488)
8 3bso_A RNA dependent RNA polym 6.6 4E+02 0.014 22.6 3.7 30 52-82 298-327 (510)
9 1xr7_A Genome polyprotein; RNA 6.3 3E+02 0.01 23.0 2.8 22 52-74 285-306 (460)
10 4eiy_A Adenosine receptor A2A/ 6.2 2.9E+02 0.01 21.4 2.5 16 59-74 396-411 (447)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=34.55 E-value=63 Score=18.13 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12383 115 PCGYPLWPCAIIVPQYIFMLALFYDFYR 142 (152)
Q Consensus 115 ~C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 142 (152)
+.+.++..++++........+||.+++.
T Consensus 9 ~VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 9 PVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 3456678889999999999999999875
No 2
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=10.76 E-value=1.3e+02 Score=20.68 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHhcC
Q psy12383 12 ITDLLDTVFFILRKK 26 (152)
Q Consensus 12 ~~El~DTvf~VLrKk 26 (152)
..|++|..|+|..|-
T Consensus 40 msefldsmflviekl 54 (130)
T 2wb6_A 40 MSEFLDSMFLVIEKL 54 (130)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999999874
No 3
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=9.25 E-value=1.7e+02 Score=15.66 Aligned_cols=14 Identities=7% Similarity=0.581 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHhcC
Q psy12383 13 TDLLDTVFFILRKK 26 (152)
Q Consensus 13 ~El~DTvf~VLrKk 26 (152)
-|++|+..+|-.-|
T Consensus 9 s~LVdaL~~vCgdR 22 (30)
T 1m5a_B 9 SHLVEALYLVCGER 22 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccC
Confidence 37999999998765
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=8.46 E-value=1.6e+02 Score=23.32 Aligned_cols=16 Identities=13% Similarity=0.615 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHH
Q psy12383 59 SLGAVNSFVHAIMYTY 74 (152)
Q Consensus 59 ~~~~~N~~VH~iMY~Y 74 (152)
+.+.+|+.++|+.|++
T Consensus 435 ~L~~~ns~iNPiIY~~ 450 (484)
T 3vw7_A 435 CVSSISCCIDPLIYYY 450 (484)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHH
Confidence 3566999999999986
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=7.75 E-value=2.2e+02 Score=22.23 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHH
Q psy12383 60 LGAVNSFVHAIMYTY 74 (152)
Q Consensus 60 ~~~~N~~VH~iMY~Y 74 (152)
.+.+|+.++|+.|.+
T Consensus 427 L~~~ns~~NPiIY~~ 441 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAF 441 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHH
Confidence 678899999999987
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=6.97 E-value=2.6e+02 Score=21.10 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHH
Q psy12383 60 LGAVNSFVHAIMYTY 74 (152)
Q Consensus 60 ~~~~N~~VH~iMY~Y 74 (152)
.+.+|+.+||+.|.+
T Consensus 293 l~~~ns~~NPiiY~~ 307 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCC 307 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466799999999976
No 7
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=6.74 E-value=2.6e+02 Score=21.95 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHH
Q psy12383 59 SLGAVNSFVHAIMYTY 74 (152)
Q Consensus 59 ~~~~~N~~VH~iMY~Y 74 (152)
+.+.+|+.++|+.|.+
T Consensus 437 ~l~~~ns~~NPiIY~~ 452 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAY 452 (488)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhh
Confidence 4678999999999986
No 8
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=6.61 E-value=4e+02 Score=22.57 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred ccCccchhhhhhhHHHHHHHHHHHHHHhhCC
Q psy12383 52 VPGGHAVSLGAVNSFVHAIMYTYYLLSALDK 82 (152)
Q Consensus 52 ~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~ 82 (152)
.|+|+. ..+..|+++|.+.-.|=+....|.
T Consensus 298 ~PSG~p-~Tsi~NSi~N~i~~~~a~~~~~~~ 327 (510)
T 3bso_A 298 LPSGVP-CTSQWNSIAHWLLTLCALSEVTNL 327 (510)
T ss_dssp CCTTST-THHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCC-eeeccchHHHHHHHHHHHHHhcCC
Confidence 467766 479999999998765533333454
No 9
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=6.32 E-value=3e+02 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.3
Q ss_pred ccCccchhhhhhhHHHHHHHHHH
Q psy12383 52 VPGGHAVSLGAVNSFVHAIMYTY 74 (152)
Q Consensus 52 ~~~~~~~~~~~~N~~VH~iMY~Y 74 (152)
.|+|+. ..+..|+.+|.++-.|
T Consensus 285 ~PSG~p-~Tsi~NSl~n~i~~~~ 306 (460)
T 1xr7_A 285 VPSGCS-GTSIFNSMINNIIIRT 306 (460)
T ss_dssp CCTTST-THHHHHHHHHHHHHHH
T ss_pred ccCCCC-ccccchhHHHHHHHHH
Confidence 467766 4799999999987654
No 10
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=6.22 E-value=2.9e+02 Score=21.40 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHH
Q psy12383 59 SLGAVNSFVHAIMYTY 74 (152)
Q Consensus 59 ~~~~~N~~VH~iMY~Y 74 (152)
+.+.+|+.++|+.|.+
T Consensus 396 ~l~~~ns~~NPiIY~~ 411 (447)
T 4eiy_A 396 VLSHTNSVVNPFIYAY 411 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhHh
Confidence 4677899999999986
Done!