Query psy12383
Match_columns 152
No_of_seqs 144 out of 913
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 17:47:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 34.7 29 0.0021 18.1 4.1 27 116-142 10-36 (37)
2 d1vf5c3 f.23.23.1 (C:250-286) 22.0 17 0.0012 19.2 1.2 13 15-27 17-29 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 14.1 26 0.0019 19.2 0.8 13 15-27 16-28 (45)
4 d2v5pc1 g.1.1.1 (C:6-63) Insul 6.4 98 0.0071 17.6 1.3 14 13-26 6-19 (58)
5 d1khva_ e.8.1.4 (A:) Viral RNA 6.4 1.9E+02 0.013 22.5 3.6 25 52-77 302-326 (497)
6 d1wqji1 g.1.1.1 (I:2-63) Insul 6.3 99 0.0072 17.8 1.3 14 13-26 7-20 (62)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 6.2 1.2E+02 0.0084 21.0 1.9 15 60-74 294-308 (348)
8 d1xr5a_ e.8.1.4 (A:) Viral RNA 5.6 2.2E+02 0.016 21.8 3.5 28 52-80 285-312 (460)
9 d1ra6a_ e.8.1.4 (A:) Viral RNA 5.5 2.3E+02 0.017 21.7 3.6 27 52-79 286-312 (461)
10 d1tuba2 d.79.2.1 (A:246-440) T 5.3 91 0.0066 21.2 0.8 8 31-38 158-165 (195)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.68 E-value=29 Score=18.07 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy12383 116 CGYPLWPCAIIVPQYIFMLALFYDFYR 142 (152)
Q Consensus 116 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 142 (152)
.+.++..++++.......-+||+++|.
T Consensus 10 veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 455678888999889999999999875
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.02 E-value=17 Score=19.21 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCC
Q psy12383 15 LLDTVFFILRKKF 27 (152)
Q Consensus 15 l~DTvf~VLrKk~ 27 (152)
++--+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 4556789999984
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.10 E-value=26 Score=19.18 Aligned_cols=13 Identities=46% Similarity=0.743 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCC
Q psy12383 15 LLDTVFFILRKKF 27 (152)
Q Consensus 15 l~DTvf~VLrKk~ 27 (152)
.+--+++||+||+
T Consensus 16 ~laQi~LVLKKKQ 28 (45)
T d1q90a3 16 LLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566799999985
No 4
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.44 E-value=98 Score=17.60 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHhcC
Q psy12383 13 TDLLDTVFFILRKK 26 (152)
Q Consensus 13 ~El~DTvf~VLrKk 26 (152)
-||+||.-+|-.-+
T Consensus 6 s~LVdaL~~VCg~r 19 (58)
T d2v5pc1 6 GELVDTLQFVCGDR 19 (58)
T ss_dssp HHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 38999999998655
No 5
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=6.42 E-value=1.9e+02 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=18.1
Q ss_pred ccCccchhhhhhhHHHHHHHHHHHHH
Q psy12383 52 VPGGHAVSLGAVNSFVHAIMYTYYLL 77 (152)
Q Consensus 52 ~~~~~~~~~~~~N~~VH~iMY~YY~l 77 (152)
.|+|+. .-+++||++|.+|..|=..
T Consensus 302 ~PSG~p-~Tsi~NSi~N~i~i~~a~~ 326 (497)
T d1khva_ 302 LPSGMP-FTSVINSICHWLLWSAAVY 326 (497)
T ss_dssp CCTTST-THHHHHHHHHHHHHHHHHH
T ss_pred CCCCCc-eeehhhhHHHHHHHHHHHH
Confidence 356666 4799999999987665333
No 6
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.32 E-value=99 Score=17.76 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhcC
Q psy12383 13 TDLLDTVFFILRKK 26 (152)
Q Consensus 13 ~El~DTvf~VLrKk 26 (152)
-||+||.-+|-.-+
T Consensus 7 s~LvdaL~~VCG~r 20 (62)
T d1wqji1 7 AELVDALQFVCGDR 20 (62)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccC
Confidence 38999999998655
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.15 E-value=1.2e+02 Score=21.03 Aligned_cols=15 Identities=7% Similarity=0.383 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHH
Q psy12383 60 LGAVNSFVHAIMYTY 74 (152)
Q Consensus 60 ~~~~N~~VH~iMY~Y 74 (152)
.+.+|+.++|+.|.+
T Consensus 294 l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 294 FAKTSAVYNPVIYIM 308 (348)
T ss_dssp HGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 567999999999976
No 8
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=5.58 E-value=2.2e+02 Score=21.75 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=20.4
Q ss_pred ccCccchhhhhhhHHHHHHHHHHHHHHhh
Q psy12383 52 VPGGHAVSLGAVNSFVHAIMYTYYLLSAL 80 (152)
Q Consensus 52 ~~~~~~~~~~~~N~~VH~iMY~YY~l~a~ 80 (152)
.|+|+. ..+.+||.+|.++..|=.+.+.
T Consensus 285 lPSG~p-~Tsi~NSi~N~i~i~~a~~~~~ 312 (460)
T d1xr5a_ 285 MPSGCS-GTSIFNSMINNIIIRTLILDAY 312 (460)
T ss_dssp CCTTSS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCC-eeeehhhHHHHHHHHHHHHHHc
Confidence 356655 4799999999998777555543
No 9
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=5.54 E-value=2.3e+02 Score=21.66 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=18.6
Q ss_pred ccCccchhhhhhhHHHHHHHHHHHHHHh
Q psy12383 52 VPGGHAVSLGAVNSFVHAIMYTYYLLSA 79 (152)
Q Consensus 52 ~~~~~~~~~~~~N~~VH~iMY~YY~l~a 79 (152)
.|+|+. ..+.+||++|.++..|=.+..
T Consensus 286 lPSG~~-~T~iiNSi~N~i~i~~a~~~~ 312 (461)
T d1ra6a_ 286 MPSGCS-GTSIFNSMINNLIIRTLLLKT 312 (461)
T ss_dssp CCTBST-THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-eeEeehhHHHHHHHHHHHHHh
Confidence 456665 489999999998755433333
No 10
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.27 E-value=91 Score=21.18 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=6.4
Q ss_pred eEeeeecc
Q psy12383 31 SFLHVYHH 38 (152)
Q Consensus 31 sfLHvyHH 38 (152)
.|||||=.
T Consensus 158 Aflh~Y~~ 165 (195)
T d1tuba2 158 AFVHWYVG 165 (195)
T ss_dssp CCTTTGGG
T ss_pred hHHHHhcc
Confidence 79999943
Done!