RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12383
(152 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 147 bits (373), Expect = 3e-45
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Query: 2 LCVWYY-YMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSL 60
+ WY+ +++K +LLDTVF +LRKK +Q SFLHVYHH M++ +G +Y PGGH +
Sbjct: 87 VGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFI 146
Query: 61 GAVNSFVHAIMYTYYLLSALDKKFTEAKWKRYITQLQMVQFVCLIVHFSLPFLF----PC 116
+NSFVH IMY YY L+AL + WK+YITQLQ++QFV + H C
Sbjct: 147 ALLNSFVHVIMYFYYFLAALGARGLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGC 206
Query: 117 GYPLWPCAII-VPQYIFMLALFYDFYRKAYGNKPK 150
G P + + Y+ L LF +FY K+Y K
Sbjct: 207 GGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKK 241
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 47.2 bits (112), Expect = 6e-07
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 7 YYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHA-VSLGAVNS 65
+ ++K+ + DT F I+ K + FL +HH + + + Y G + A+N
Sbjct: 118 FSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMS--YQQGSSIWICAAAMNY 173
Query: 66 FVHAIMYTYYLLSALDKKFTEAKWKRYITQLQMVQFV 102
FVH+IMY Y+ LS K + YIT LQ+ Q V
Sbjct: 174 FVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMV 210
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 28.9 bits (65), Expect = 1.0
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 98 MVQFVCLIVH---FSLPFLFPCGYPLWPCAIIVPQYIFMLALFYDF 140
M Q + L+ H LP PC+ I+ LF D
Sbjct: 205 MAQLLNLVSHYLSIRLPA-----EITLPCSDYPQPTIYSPPLFIDR 245
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 27.9 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 19/39 (48%)
Query: 44 TGLIGTR-------------YVPGGH------AVSLGAV 63
TGL+GTR YV GG AV+LG V
Sbjct: 126 TGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLV 164
>gnl|CDD|224020 COG1095, RPB7, DNA-directed RNA polymerase, subunit E'
[Transcription].
Length = 183
Score = 26.5 bits (59), Expect = 5.9
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 40 GMIITGLIGTRYVPGGHAVSLGAVNSFVHA--IMYTYYLLSALDKKFTEAKWKRYITQLQ 97
G ++ G + V G V +G ++ VH IM Y +K + KR +
Sbjct: 82 GEVVEGEV-VEVVEFGAFVRIGPLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGD 140
Query: 98 MVQFVCLIVHFSLP 111
V+ IV SL
Sbjct: 141 KVRA--RIVGVSLK 152
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional.
Length = 321
Score = 26.2 bits (58), Expect = 7.6
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 8 YMAKITDLLDTVFFILRKKFKQASFLHVYHHTGM 41
Y+ + +L D V F + K Q L + H +
Sbjct: 23 YLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVI 56
>gnl|CDD|185280 PRK15382, PRK15382, non-LEE encoded effector protein NleB;
Provisional.
Length = 326
Score = 26.0 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 35 VYHHTGMIITGLIGTRYVPGGHAV 58
+Y MIIT +G Y P G AV
Sbjct: 215 IYLDADMIITDKLGVLYAPDGIAV 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.146 0.487
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,992,011
Number of extensions: 716318
Number of successful extensions: 1208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 22
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.8 bits)