RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12383
         (152 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.14
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 32/117 (27%)

Query: 1   MLCVWYYYMAKITDLLDTVFFILRKKFKQASFLHVYHHTGMIITGLI-GTR-YVPGGHAV 58
           ML +      ++ D ++               + +          L+ G +  V  G   
Sbjct: 338 MLSISNLTQEQVQDYVNKT----NSHLPAGKQVEI---------SLVNGAKNLVVSGPPQ 384

Query: 59  SLGAVNSFVHAIMYTYYLLSALDK---KFTEAKWKRYITQLQMVQFVCLIVHFSLPF 112
           SL  +N  +          S LD+    F+E K K         +F  L V  + PF
Sbjct: 385 SLYGLNLTLRKAKAP----SGLDQSRIPFSERKLKFS------NRF--LPV--ASPF 427


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.59
 Identities = 24/170 (14%), Positives = 47/170 (27%), Gaps = 51/170 (30%)

Query: 16  LDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSLGAVNSFVHAIMY--- 72
           + +++  L+ K +    LH       I+      +       +       F   I +   
Sbjct: 428 IPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 73  ------TYYLLSA--LDKKFTEAK-----------------------WKRYITQ--LQMV 99
                    L     LD +F E K                       +K YI     +  
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 100 QFVCLIVHFSLPFLFPCGYPLW--PCAIIVPQYIFML---ALFYDFYRKA 144
           + V  I+     FL      L       ++ +   M    A+F + +++ 
Sbjct: 543 RLVNAILD----FLPKIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQV 587


>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
           sandwich, unknown function; 2.50A {Streptococcus mutans}
          Length = 311

 Score = 27.5 bits (62), Expect = 1.8
 Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 4/31 (12%)

Query: 39  TGMIITGLIGTRYVPGGHAVSLGAVNSFVHA 69
            GMI  G +   +       +      F+H+
Sbjct: 254 AGMI-AGFVAQFHTDRFEVAAAAV---FLHS 280


>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport,
           membrane, chloride, receptor, ION pump, transport,
           sensory transduction; HET: BOG PLM RET; 1.7A
           {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
          Length = 274

 Score = 25.4 bits (55), Expect = 9.3
 Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 7/124 (5%)

Query: 15  LLDTVFFILRKKFKQASFLHVYHHTGMIITGLIGTRYVPGGHAVSLGAVNSFVHAIMYTY 74
           ++     +L      + F  +    GM +TGL                  S    ++   
Sbjct: 118 MILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLS 177

Query: 75  YLLSALDKKFTEAKWKRYITQLQMVQFVCLIVHFSLPFLFPCGYPLWPCAIIVPQYIFML 134
            L++      + A        L+++  V           +P  + +    + + Q +   
Sbjct: 178 ALVTDWAASASSAGTAEIFDTLRVLVVVLW-------LGYPIVWAVGVEGLALVQSVGAT 230

Query: 135 ALFY 138
           +  Y
Sbjct: 231 SWAY 234


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.146    0.487 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,454,701
Number of extensions: 132205
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 9
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.7 bits)