RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12383
         (152 letters)



>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein
          PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 106

 Score = 23.2 bits (49), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 1  MLCVWYYYMAKITDLLDTVFFILRKKFKQAS 31
          +  VW Y  A  T+++D     LR+K +   
Sbjct: 58 LELVWGYDFAADTNVVDVFIGYLRRKLEAGG 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.146    0.487 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 618,913
Number of extensions: 26288
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.0 bits)