Query psy12384
Match_columns 356
No_of_seqs 228 out of 1725
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:47:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 6.8 5.2E+02 0.018 16.3 4.1 27 316-342 10-36 (37)
2 1m5a_B Insulin B chain; alpha 4.5 3.5E+02 0.012 16.4 1.4 13 15-27 10-22 (30)
3 2wb6_A AFV1-102; archaeal viru 3.3 4.3E+02 0.015 20.4 1.3 15 13-27 40-54 (130)
4 1z2t_A Anchor peptide Ser65-Le 3.0 1.9E+02 0.0065 16.5 -0.7 9 341-349 10-18 (26)
5 1d4b_A CIDE B, human cell deat 2.4 2.3E+02 0.0077 23.0 -1.2 11 216-226 96-106 (122)
6 3vw7_A Proteinase-activated re 2.4 7.4E+02 0.025 22.8 2.2 17 257-273 434-450 (484)
7 3dwl_F Actin-related protein 2 2.3 5.8E+02 0.02 21.6 1.1 22 20-41 100-124 (168)
8 2lor_A Transmembrane protein 1 3.4 3.8E+02 0.013 21.1 0.0 29 159-192 46-74 (108)
9 4dkl_A MU-type opioid receptor 2.2 9.3E+02 0.032 21.8 2.6 17 258-274 426-442 (464)
10 1k8k_F P20, ARP2/3 complex 20 2.2 5.7E+02 0.019 21.7 0.9 21 20-40 100-123 (168)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.84 E-value=5.2e+02 Score=16.29 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy12384 316 CKQNRILTYYMCFNVTAFLLLFLNFYR 342 (356)
Q Consensus 316 C~~~~~~~~~~~~~~~s~l~LF~~Fy~ 342 (356)
-+.++...+.+.......-+||.++|-
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhcc
Confidence 345577778888888889999999874
No 2
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=4.45 E-value=3.5e+02 Score=16.43 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.9
Q ss_pred hhHhHHhhhhhcC
Q psy12384 15 ELLDTVFFVLRKK 27 (356)
Q Consensus 15 el~DTvf~vLrkk 27 (356)
|++|+..+|-.-|
T Consensus 10 ~LVdaL~~vCgdR 22 (30)
T 1m5a_B 10 HLVEALYLVCGER 22 (30)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHhccC
Confidence 7899999998765
No 3
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=3.33 E-value=4.3e+02 Score=20.37 Aligned_cols=15 Identities=40% Similarity=0.771 Sum_probs=12.6
Q ss_pred HhhhHhHHhhhhhcC
Q psy12384 13 VVELLDTVFFVLRKK 27 (356)
Q Consensus 13 ~~el~DTvf~vLrkk 27 (356)
.-|++|..|+|..|-
T Consensus 40 msefldsmflviekl 54 (130)
T 2wb6_A 40 MSEFLDSMFLVIEKL 54 (130)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 358999999999874
No 4
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=3.02 E-value=1.9e+02 Score=16.51 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=4.4
Q ss_pred HHHhcccCC
Q psy12384 341 YRKAYIHNN 349 (356)
Q Consensus 341 y~~~Y~~~~ 349 (356)
|+|.|.+|-
T Consensus 10 fvkryvrkm 18 (26)
T 1z2t_A 10 FVKRYVRKM 18 (26)
T ss_dssp HHHHHTHHH
T ss_pred eHHHHHHHH
Confidence 345555443
No 5
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=2.43 E-value=2.3e+02 Score=22.97 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=7.7
Q ss_pred hhhhhhhhcCC
Q psy12384 216 DTVFFVLRKKN 226 (356)
Q Consensus 216 DTvf~VLrkk~ 226 (356)
||.|++|++.+
T Consensus 96 nT~lmvL~~gq 106 (122)
T 1d4b_A 96 DTCLMVLQSGQ 106 (122)
T ss_dssp CCCCCEECSSC
T ss_pred CCEEEEecCCC
Confidence 67777777654
No 6
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=2.38 E-value=7.4e+02 Score=22.76 Aligned_cols=17 Identities=12% Similarity=0.655 Sum_probs=14.3
Q ss_pred hhHHhhhhhHHHHHHHH
Q psy12384 257 LFIGFMNSAVHVMMYFY 273 (356)
Q Consensus 257 ~~~~~~Ns~VH~iMY~Y 273 (356)
.+.+.+|+.++|+.|++
T Consensus 434 ~~L~~~ns~iNPiIY~~ 450 (484)
T 3vw7_A 434 VCVSSISCCIDPLIYYY 450 (484)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHH
Confidence 34677999999999986
No 7
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=2.34 E-value=5.8e+02 Score=21.60 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=16.4
Q ss_pred HhhhhhcCCCc---eeEeeecccch
Q psy12384 20 VFFVLRKKNNQ---ITALHVYHHSI 41 (356)
Q Consensus 20 vf~vLrkk~~~---~~fLH~yHH~~ 41 (356)
-|.|||+||-+ +|||=.-.|.-
T Consensus 100 ~f~ILRrkPv~GYDISFLItn~H~e 124 (168)
T 3dwl_F 100 SFFILRRKPVQGYDISFLITNYHTE 124 (168)
T ss_dssp TSTTBCSSCCTTCSEEEEEETTHHH
T ss_pred ceEEeeeCCcCCcceeeeehHHHHH
Confidence 48899999854 67877766653
No 8
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=3.36 E-value=3.8e+02 Score=21.07 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=20.8
Q ss_pred hcCccccccCCCCcchhhhhhHHHHHHHHHHHHH
Q psy12384 159 KLGPQWMENRKPIDLKYVLILYNAIQVVYSIGLC 192 (356)
Q Consensus 159 ~~g~~~Mk~r~p~~Lk~~~~~~N~~l~~~s~~~~ 192 (356)
+.+++..++|=|+.++ ||++++++.+.++
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~~sva 74 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVAGSVV 74 (108)
Confidence 3578888888898887 6777776555444
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=2.23 E-value=9.3e+02 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=14.3
Q ss_pred hHHhhhhhHHHHHHHHH
Q psy12384 258 FIGFMNSAVHVMMYFYY 274 (356)
Q Consensus 258 ~~~~~Ns~VH~iMY~YY 274 (356)
+.+.+|+.++|+.|++.
T Consensus 426 ~L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 426 ALGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHh
Confidence 36679999999999873
No 10
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=2.22 E-value=5.7e+02 Score=21.68 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=16.0
Q ss_pred HhhhhhcCCCc---eeEeeecccc
Q psy12384 20 VFFVLRKKNNQ---ITALHVYHHS 40 (356)
Q Consensus 20 vf~vLrkk~~~---~~fLH~yHH~ 40 (356)
-|.|||+||-+ +|||=.-+|.
T Consensus 100 ~f~ILRrkPv~GYDISFLItn~h~ 123 (168)
T 1k8k_F 100 NFFILRRKPVEGYDISFLITNFHT 123 (168)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHH
T ss_pred ceEEeeeCCcCCccchhhhhhhhH
Confidence 48899999854 6787777775
Done!